List of usage examples for org.apache.commons.io FileUtils writeLines
public static void writeLines(File file, Collection lines) throws IOException
toString() value of each item in a collection to the specified File line by line. From source file:cz.cas.lib.proarc.common.process.GenericExternalProcessTest.java
/** onExit is an experimental feature .*/ @Test/*from ww w . j a v a 2s . co m*/ public void testIMConvertOnExit() throws Exception { String imageMagicExec = "/usr/bin/convert"; Assume.assumeTrue(new File(imageMagicExec).exists()); File confFile = temp.newFile("props.cfg"); File root = temp.getRoot(); URL pdfaResource = TiffImporterTest.class.getResource("pdfa_test.pdf"); File pdfa = new File(root, "pdfa_test.pdf"); FileUtils.copyURLToFile(pdfaResource, pdfa); FileUtils.writeLines(confFile, Arrays.asList("input.file.name=RESOLVED", "exec=" + imageMagicExec, "arg=-thumbnail", "arg=120x128", "arg=$${input.file}[0]", "arg=-flatten", "arg=$${input.folder}/$${input.file.name}.jpg", "result.file=$${input.folder}/$${input.file.name}.jpg", "onExits=0", "onExit.0.param.output.file=$${input.folder}/$${input.file.name}.jpg", "id=test")); PropertiesConfiguration conf = new PropertiesConfiguration(confFile); GenericExternalProcess gep = new GenericExternalProcess(conf); gep.addInputFile(pdfa); gep.run(); // System.out.printf("#exit: %s, out: %s\nresults: %s\n", // gep.getExitCode(), gep.getFullOutput(), gep.getResultParameters()); assertEquals("exit code", 0, gep.getExitCode()); File output = gep.getOutputFile(); assertNotNull(output); assertTrue(output.toString(), output.exists()); assertTrue("Not JPEG", InputUtils.isJpeg(output)); }
From source file:jp.igapyon.selecrawler.SeleCrawlerWebContentNewUrlFinder.java
public void process(final SeleCrawlerSettings settings) throws IOException { this.settings = settings; System.err.println("[jp.igapyon.selecrawler] Find new url from fetched contents."); final List<String> urlList = new ArrayList<String>(); processGatherUrl(urlList);/*from w ww. j av a2s .c o m*/ Collections.sort(urlList); // remove duplicated urls for (int index = 1; index < urlList.size(); index++) { if (urlList.get(index - 1).equals(urlList.get(index))) { urlList.remove(index--); } } // remove if already registered. { final List<String> registeredList = FileUtils.readLines(new File(settings.getPathUrllisttTxt()), "UTF-8"); final Map<String, String> registeredMap = new HashMap<String, String>(); for (String urlRegistered : registeredList) { registeredMap.put(urlRegistered, urlRegistered); } for (int index = 0; index < urlList.size(); index++) { if (registeredMap.get(urlList.get(index)) != null) { // remove registered url. urlList.remove(index--); } } } // remove it if it is marked as exclude for (int index = 0; index < urlList.size(); index++) { final String url = urlList.get(index); final List<String> excludeRegexList = FileUtils .readLines(new File(settings.getPathUrllistExcludeRegexTxt()), "UTF-8"); for (String regex : excludeRegexList) { final Pattern pat = Pattern.compile(regex); final Matcher mat = pat.matcher(url); if (mat.find()) { // remove registered url. urlList.remove(index--); } } } final File newurlcandidate = new File(new File(settings.getPathTargetDir()), SeleCrawlerConstants.EXT_SC_NEWURLCANDIDATE); System.err.println( "[selecrawler] create/update new url candidate file: " + newurlcandidate.getCanonicalPath()); FileUtils.writeLines(newurlcandidate, urlList); }
From source file:edu.ku.brc.specify.dbsupport.cleanuptools.FirstLastVerifier.java
/** * @param args/*w ww. j a va 2 s . com*/ */ public static void main(String[] args) { if (true) { testLastNames(); return; } FirstLastVerifier flv = new FirstLastVerifier(); System.out.println(flv.isFirstName("Bill")); System.out.println(flv.isLastName("Bill")); System.out.println(flv.isFirstName("Johnson")); System.out.println(flv.isLastName("Johnson")); try { if (false) { for (String nm : new String[] { "firstnames", "lastnames" }) { File file = new File("/Users/rods/Downloads/" + nm + ".txt"); try { PrintWriter pw = new PrintWriter("/Users/rods/Downloads/" + nm + ".list"); for (String line : (List<String>) FileUtils.readLines(file)) { String[] toks = StringUtils.split(line, '\t'); if (toks != null && toks.length > 0) pw.println(toks[0]); } pw.close(); } catch (Exception e) { e.printStackTrace(); } } } Vector<String> lnames = new Vector<String>(); File file = XMLHelper.getConfigDir("lastnames.list"); if (false) { for (String name : (List<String>) FileUtils.readLines(file)) { if (flv.isFirstName(name)) { System.out.println(name + " is first."); } else { lnames.add(name); } } Collections.sort(lnames); FileUtils.writeLines(file, lnames); } lnames.clear(); file = XMLHelper.getConfigDir("firstnames.list"); for (String name : (List<String>) FileUtils.readLines(file)) { if (flv.isLastName(name)) { System.out.println(name + " is first."); } else { lnames.add(name); } } Collections.sort(lnames); //FileUtils.writeLines(file, lnames); } catch (Exception ex) { ex.printStackTrace(); } }
From source file:edu.ku.brc.util.HelpIndexer.java
/** * //w ww.j av a 2s .c o m */ @SuppressWarnings("unchecked") public void indexIt() { if (!jhm.exists()) { System.out.println("jhm file not found."); return; } if (!topDir.isDirectory()) { System.out.println("directory does not exist."); return; } try { mapLines = FileUtils.readLines(jhm); } catch (IOException ex) { edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount(); edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(HelpIndexer.class, ex); System.out.println("Error reading map file: " + ex.getMessage()); return; } Vector<String> lines = new Vector<String>(); String[] ext = { "html" }; Iterator<File> helpFiles = FileUtils.iterateFiles(topDir, ext, true); while (helpFiles.hasNext()) { File file = helpFiles.next(); System.out.println("Processing " + file.getName()); processFile(file, lines); } System.out.println(); System.out.println("all done."); File outFile = new File(outFileName); try { //add lines to top of file lines.insertElementAt("<?xml version='1.0' encoding='ISO-8859-1' ?>", 0); lines.insertElementAt("<!DOCTYPE index", 1); lines.insertElementAt(" PUBLIC \"-//Sun Microsystems Inc.//DTD JavaHelp Index Version 1.0//EN\"", 2); lines.insertElementAt(" \"http://java.sun.com/products/javahelp/index_1_0.dtd\">", 3); lines.insertElementAt("<index version=\"1.0\">", 4); lines.insertElementAt(" ", 5); //and bottom... lines.add(" "); lines.add("</index>"); FileUtils.writeLines(outFile, lines); } catch (IOException ex) { edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount(); edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(HelpIndexer.class, ex); System.out.println("error writing output file: " + ex.getMessage()); } }
From source file:com.github.aliakhtar.annoTest.util.Compiler.java
protected File writeSourceFile(SourceFile sourceFile) throws IOException { File file = new File(sourceDir, sourceFile.getFileName()); FileUtils.writeLines(file, sourceFile.getContent()); return file;// w ww .j a va 2s. co m }
From source file:io.seqware.pipeline.whitestar.WhiteStarTest.java
protected static Path createSettingsFile(String engine, String metadataMethod) throws IOException { // override seqware settings file List<String> whiteStarProperties = new ArrayList<>(); whiteStarProperties.add("SW_METADATA_METHOD=" + metadataMethod); whiteStarProperties.add("SW_REST_USER=admin@admin.com"); whiteStarProperties.add("SW_REST_PASS=admin"); whiteStarProperties.add("SW_ADMIN_REST_URL=fubar"); whiteStarProperties.add("SW_DEFAULT_WORKFLOW_ENGINE=" + engine); whiteStarProperties.add("OOZIE_WORK_DIR=/tmp"); // use this if running locally via mvn tomcat7:run // whiteStarProperties.add("SW_REST_URL=http://localhost:8889/seqware-webservice"); // use this in our regression testing framework whiteStarProperties.add("SW_REST_URL=http://master:8080/SeqWareWebService"); Path createTempFile = Files.createTempFile("whitestar", "properties"); FileUtils.writeLines(createTempFile.toFile(), whiteStarProperties); return createTempFile; }
From source file:com.thesmartweb.swebrank.Sensebot.java
/** * Method to get the top sensebot concepts recognized for given links * @param links the links to search for//w w w.java 2 s . c o m * @param directory the directory to save the results to * @param SensebotConcepts the amount of concepts to search for * @param config_path the path to find sensebot's username * @return a list with all the top sensebot concepts recognized for the given links */ public List<String> compute(String[] links, String directory, int SensebotConcepts, String config_path) { List<String> wordList = new ArrayList<>(); try { URL diff_url = null; String stringtosplit = ""; String username = GetUserName(config_path); for (String link : links) { if (!(link == null)) { diff_url = new URL("http://api.sensebot.net/svc/extconcone.asmx/ExtractConcepts?userName=" + username + "&numConcepts=" + SensebotConcepts + "&artClass=&artLength=0&Lang=English&allURLs=" + link); stringtosplit = connect(diff_url); if (!(stringtosplit == null) && (!(stringtosplit.equalsIgnoreCase("")))) { stringtosplit = stringtosplit.replaceAll("[\\W&&[^\\s]]", ""); if (!(stringtosplit == null) && (!(stringtosplit.equalsIgnoreCase("")))) { String[] tokenizedTerms = stringtosplit.split("\\W+"); //to get individual terms for (String tokenizedTerm : tokenizedTerms) { if (!(tokenizedTerm == null) && (!(tokenizedTerm.equalsIgnoreCase("")))) { wordList.add(tokenizedTerm); } } } } } } File file_words = new File(directory + "words.txt"); FileUtils.writeLines(file_words, wordList); return wordList; } catch (MalformedURLException ex) { Logger.getLogger(Diffbot.class.getName()).log(Level.SEVERE, null, ex); return wordList; } catch (IOException ex) { Logger.getLogger(Diffbot.class.getName()).log(Level.SEVERE, null, ex); return wordList; } }
From source file:com.mythesis.profileanalysis.WordVectorFinder.java
/** * a method that cleans the word vector of a certain sub-domain * @param directory the directory where im gonna save the results * @param profile the profile i want to get the wordvector * @param master the general domain/*from w ww . j av a2 s. c o m*/ */ public void cleanWordVector(String directory, String profile, String master) { List<String> masterVector = new ArrayList<>(); List<String> wordVector = new ArrayList<>(); File wordsFile; try { wordsFile = new File(directory + "\\wordVector" + master + ".txt"); masterVector = FileUtils.readLines(wordsFile); // get the word vector of the general domain wordsFile = new File(directory + "\\wordVector" + profile + ".txt"); wordVector = FileUtils.readLines(wordsFile); // get the word vector of the sub-domain } catch (IOException ex) { Logger.getLogger(WordVectorFinder.class.getName()).log(Level.SEVERE, null, ex); } for (String s : masterVector) { if (wordVector.contains(s)) wordVector.remove(s); // remove any word that occurs in general domain's word vector } // save the new word vector File wordVectorPath = new File(directory + "\\wordVectorCleaned" + profile + ".txt"); try { FileUtils.writeLines(wordVectorPath, wordVector); } catch (IOException ex) { Logger.getLogger(WordVectorFinder.class.getName()).log(Level.SEVERE, null, ex); } }
From source file:de.unisb.cs.st.javalanche.mutation.analyze.MutationResultAnalyzer.java
public String analyze(Iterable<Mutation> mutations, HtmlReport report) { int touched = 0; int notTouched = 0; List<Mutation> killedList = new ArrayList<Mutation>(); List<Mutation> survivedList = new ArrayList<Mutation>(); List<Mutation> survivedTouchedList = new ArrayList<Mutation>(); List<Long> notCovered = new ArrayList<Long>(); int covered = 0; for (Mutation mutation : mutations) { if (mutation == null) { throw new RuntimeException("Null fetched from db"); }//from ww w .ja v a2 s . c om MutationTestResult mutationResult = mutation.getMutationResult(); boolean mutationTouched = mutationResult != null && mutationResult.isTouched(); if (mutation.isDetected()) { killedList.add(mutation); } else { survivedList.add(mutation); if (mutationTouched) { survivedTouchedList.add(mutation); } } if (mutationTouched) { touched++; } else { notTouched++; } boolean isCovered = MutationCoverageFile.isCovered(mutation.getId()); boolean isDerived = mutation.getBaseMutationId() != null; String info = mutation.getMutationType() + " Derived " + isDerived + " " + mutation.toShortString() + " " + mutation.getAddInfo() + " " + mutation.getOperatorAddInfo(); if (isCovered != mutationTouched) { String message; if (isCovered) { message = "Mutation is considered to be covered by tests, but was actually not executed during mutation testing."; } else { message = "Mutation was not considered to be covered by tests, but was actually executed during mutation testing."; } logger.warn(message + " " + info); notCovered.add(mutation.getId()); } if (isCovered) { covered++; } } int killed = killedList.size(); int survived = survivedList.size(); int total = survived + killed; assert (survived + killed) == (notTouched + touched); StringBuilder sb = new StringBuilder(); Set<Long> killedIds = new TreeSet<Long>(); Set<Long> survivedIds = new TreeSet<Long>(); for (Mutation mutation : killedList) { killedIds.add(mutation.getId()); } for (Mutation mutation : survivedTouchedList) { survivedIds.add(mutation.getId()); } try { FileUtils.writeLines(new File(ConfigurationLocator.getJavalancheConfiguration().getOutputDir() + "/not-covered-during-mutation-testing-id.txt"), notCovered); } catch (IOException e) { throw new RuntimeException(e); } if (WRITE_FILES) { XmlIo.toXML(killedList, "killed-mutations.xml"); XmlIo.toXML(survivedList, "survived-mutations.xml"); XmlIo.toXML(killedIds, "killed-ids.xml"); XmlIo.toXML(survivedIds, "survived-ids.xml"); } sb.append(formatLine("Total mutations: ", total)); sb.append(formatLine("Covered mutations (in scan step): ", covered, AnalyzeUtil.formatPercent(covered, total))); sb.append(formatLine("Covered mutations (actually executed during mutation testing): ", touched, AnalyzeUtil.formatPercent(touched, total))); sb.append(formatLine("Not covered mutations: ", notTouched, AnalyzeUtil.formatPercent(notTouched, total))); sb.append(formatLine("Killed mutations: ", killed, AnalyzeUtil.formatPercent(killed, total))); sb.append(formatLine("Surviving mutations: ", survived, AnalyzeUtil.formatPercent(survived, total))); // sb.append("IDs:\n"); // for (Long survivedId : survivedIds) { // sb.append(survivedId).append(", "); // } sb.append(formatLine("Mutation score: ", AnalyzeUtil.formatPercent(killed, total))); sb.append(formatLine("Mutation score for mutations that were covered: ", AnalyzeUtil.formatPercent(killed, touched))); if (notCovered.size() > 0) { sb.append(formatLine("Mutations that where expected to be covered but actually not covered: ", notCovered.size(), notCovered.toString())); } return sb.toString(); }
From source file:io.github.bunnyblue.droidfix.classcomputer.proguard.MappingMapper.java
public void writeNewClassCache(ArrayList<ClassObject> cacheClasses) { Collections.sort(cacheClasses); ArrayList<String> md5s = new ArrayList<String>(); for (ClassObject classObject : cacheClasses) { StringBuffer stringBuffer = new StringBuffer(); stringBuffer.append(classObject.getClassName()); stringBuffer.append(" "); stringBuffer.append(classObject.getMd5()); md5s.add(stringBuffer.toString()); }//from w ww .j a va 2s . co m try { FileUtils.writeLines(new File(Configure.getInstance().getPatchClassMD5()), md5s); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } }