Example usage for org.apache.commons.io FilenameUtils removeExtension

Introduction

In this page you can find the example usage for org.apache.commons.io FilenameUtils removeExtension.

Prototype

public static String removeExtension(String filename) 

Source Link

Document

Removes the extension from a filename.

Usage

From source file:com.liferay.sync.engine.util.FileUtil.java

public static boolean isValidFileName(String fileName) {
    if (StringUtils.isBlank(fileName)) {
        return false;
    }/*ww  w .ja va  2 s.c om*/

    for (String blacklistChar : PropsValues.SYNC_FILE_BLACKLIST_CHARS) {
        if (fileName.contains(blacklistChar)) {
            return false;
        }
    }

    for (String blacklistLastChar : PropsValues.SYNC_FILE_BLACKLIST_CHARS_LAST) {

        if (blacklistLastChar.startsWith("\\u")) {
            blacklistLastChar = StringEscapeUtils.unescapeJava(blacklistLastChar);
        }

        if (fileName.endsWith(blacklistLastChar)) {
            return false;
        }
    }

    String nameWithoutExtension = FilenameUtils.removeExtension(fileName);

    for (String blacklistName : PropsValues.SYNC_FILE_BLACKLIST_NAMES) {
        if (nameWithoutExtension.equalsIgnoreCase(blacklistName)) {
            return false;
        }
    }

    return true;
}

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From source file:com.textocat.textokit.corpus.statistics.dao.corpus.XmiFileTreeCorpusDAO.java

private URI getDocumentURI(File xmiFile) throws URISyntaxException {
    return new URI(FilenameUtils.removeExtension(xmiFile.getName()));
}

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From source file:com.alibaba.otter.shared.common.utils.extension.classpath.FileSystemClassScanner.java

private Class<?> scanInJar(String jarFileName, String className) {
    ZipFile zipfile = null;//from  w ww.  java  2s  .  c  o m

    try {
        zipfile = new ZipFile(jarFileName);
        Enumeration<?> zipenum = zipfile.entries();
        ZipEntry entry = null;
        String tempClassName = null;

        while (zipenum.hasMoreElements()) {
            entry = (ZipEntry) zipenum.nextElement();
            tempClassName = entry.getName();

            if (tempClassName.endsWith(".class")) {
                tempClassName = StringUtils.replace(FilenameUtils.removeExtension(tempClassName), "/", ".");
                if (tempClassName.equals(className)) {
                    try {
                        return fileClassLoader.loadClass(className);
                    } catch (Exception ex) {
                        logger.warn("WARN ## load this class has an error,the fileName is = " + className, ex);
                    }
                }
            }
        }
    } catch (IOException ex) {
        logger.error(ex.getMessage(), ex);
    } finally {
        if (zipfile != null) {
            try {
                zipfile.close();
            } catch (IOException ex) {
                logger.warn(ex.getMessage(), ex);
            }
        }
    }
    return null;
}

---

From source file:ca.on.oicr.pde.workflows.GATK3Workflow.java

@Override
public Map<String, SqwFile> setupFiles() {

    List<String> inputFilesList = Arrays.asList(StringUtils.split(getProperty("input_files"), ","));
    Set<String> inputFilesSet = new HashSet<>(inputFilesList);

    if (inputFilesList.size() != inputFilesSet.size()) {
        throw new RuntimeException("Duplicate files detected in input_files");
    }/* w  w w. j a  va2 s. co m*/

    if ((inputFilesSet.size() % 2) != 0) {
        throw new RuntimeException("Each bam should have a corresponding index");
    }

    Map<String, String> bams = new HashMap<>();
    Map<String, String> bais = new HashMap<>();
    for (String f : inputFilesSet) {
        String fileExtension = FilenameUtils.getExtension(f);
        String fileKey = FilenameUtils.removeExtension(f);
        if (null != fileExtension) {
            switch (fileExtension) {
            case "bam":
                bams.put(fileKey, f);
                break;
            case "bai":
                bais.put(fileKey, f);
                break;
            default:
                throw new RuntimeException("Unsupported input file type");
            }
        }
    }

    int id = 0;
    for (Entry<String, String> e : bams.entrySet()) {
        String key = e.getKey();
        String bamFilePath = e.getValue();

        String baiFilePath = bais.get(key);
        if (baiFilePath == null) {
            throw new RuntimeException("Missing index for " + FilenameUtils.getName(bamFilePath));
        }

        SqwFile bam = this.createFile("file_in_" + id++);
        bam.setSourcePath(bamFilePath);
        bam.setType("application/bam");
        bam.setIsInput(true);

        SqwFile bai = this.createFile("file_in_" + id++);
        bai.setSourcePath(baiFilePath);
        bai.setType("application/bam-index");
        bai.setIsInput(true);

        //FIXME: this seems to work for now, it would be better to be able to set the provisionedPath as
        //bai.getProvisionedPath != bai.getOutputPath ...
        //at least with seqware 1.1.0, setting output path changes where the output file will be stored,
        //but the commonly used get provisioned path will return the incorrect path to the file
        bai.setOutputPath(FilenameUtils.getPath(bam.getProvisionedPath()));

        inputBamFiles.add(bam.getProvisionedPath());
    }

    return this.getFiles();
}

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From source file:de.bund.bfr.knime.gis.GisUtils.java

public static CoordinateReferenceSystem getCoordinateSystem(String shpFile)
        throws InvalidPathException, MalformedURLException, IOException, FactoryException, NoSuchFileException {
    try (Stream<String> stream = Files
            .lines(KnimeUtils.getFile(FilenameUtils.removeExtension(shpFile) + ".prj").toPath())) {
        return CRS.parseWKT(stream.collect(Collectors.joining()));
    }//from ww  w.  j  a va  2s. c om
}

---

From source file:com.googlesource.gerrit.plugins.rabbitmq.config.PluginProperties.java

@Override
public String getName() {
    if (propertiesFile != null) {
        Path path = propertiesFile.getFileName();
        if (path != null) {
            return FilenameUtils.removeExtension(path.toString());
        }/*w  w w  . j  a va  2s .  c  o  m*/
    }
    return null;
}

---

From source file:de.unidue.ltl.integration.mekaMultiLabel.MultiLabelOutcomeAnnotator.java

public Set<String> getTextClassificationOutcomes(JCas jcas) throws CollectionException {
    Set<String> outcomes = new HashSet<String>();

    DocumentMetaData dmd = DocumentMetaData.get(jcas);
    String titleWithoutExtension = FilenameUtils.removeExtension(dmd.getDocumentTitle());

    if (!goldLabelMap.containsKey(titleWithoutExtension)) {
        throw new CollectionException(new Throwable("No gold label for document: " + dmd.getDocumentTitle()));
    }//from  w  ww.j  a v a 2 s . c om

    for (String label : goldLabelMap.get(titleWithoutExtension)) {
        outcomes.add(label);
    }
    return outcomes;
}

---

From source file:com.nuvolect.securesuite.webserver.connector.CmdDuplicate.java

@Override
public InputStream go(@NonNull Map<String, String> params) {

    String url = params.get("url");
    String suffix = "~";

    /**/*from www .  ja  v a 2  s.c  o  m*/
     * Params only has the first element of the targets[] array.
     * This is fine if there is only one target but an issue for multiple file operations.
     * Manually parse the query parameter strings to get all targets.
     */
    String[] qps = params.get("queryParameterStrings").split("&");

    JsonArray added = new JsonArray();
    boolean hasFailed = false;
    for (String candidate : qps) {
        if (!candidate.contains("targets")) {
            continue;
        }

        String[] parts = candidate.split("=");

        OmniFile fromFile = new OmniFile(parts[1]);
        String toPath = fromFile.getPath();
        OmniFile toFile = null;
        for (int dupCount = 0; dupCount < 10; dupCount++) { // add no more than 10 tilda
            toFile = new OmniFile(fromFile.getVolumeId(), toPath);

            if (!toFile.exists()) {
                break;
            }

            String extension = FilenameUtils.getExtension(toPath);// add ~ to filename, keep extension
            if (!extension.isEmpty()) {
                extension = "." + extension;
            }
            toPath = FilenameUtils.removeExtension(toPath) + suffix;
            toPath = toPath + extension;
        }
        LogUtil.log(LogUtil.LogType.CMD_DUPLICATE, "file path: " + fromFile.getPath());
        LogUtil.log(LogUtil.LogType.CMD_DUPLICATE, "file exists: " + fromFile.exists());

        boolean success;
        if (fromFile.isDirectory()) {
            success = OmniFiles.copyDirectory(fromFile, toFile);
        } else {
            success = OmniFiles.copyFile(fromFile, toFile);
        }
        /**
         * If there's just only one fail, set this to include warning
         */
        hasFailed = hasFailed || !success;

        /**
         * Duplicate files have a new name, so update the modification time to present
         */
        toFile.setLastModified(System.currentTimeMillis() / 1000);

        if (success) {
            added.add(FileObj.makeObj(toFile, url));// note: full depth of directory not added
        } else {
            LogUtil.log(LogUtil.LogType.CMD_DUPLICATE, "Duplicate failed: " + toFile.getPath());
        }
    }

    JsonObject wrapper = new JsonObject();
    if (hasFailed) {
        JsonArray warning = new JsonArray();
        warning.add("errPerm");
        wrapper.add("warning", warning);
    } else {
        wrapper.add("added", added);
    }

    if (DEBUG) {
        LogUtil.log(LogUtil.LogType.CMD_DUPLICATE, "json result: " + wrapper.toString());
    }

    return getInputStream(wrapper);
}

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From source file:de.nbi.ontology.test.OntologyIndexTest.java

/**
 * Test, if isPrefix(*) works./*w  w  w.  j  a  va2  s  .c  om*/
 * 
 * @param inFile
 *            an ontology
 * @throws IOException
 */
@SuppressWarnings("unchecked")
@Test(dataProviderClass = TestFileProvider.class, dataProvider = "prefixTestFiles", groups = { "functest" })
public void isPrefix(File inFile) throws IOException {
    log.info("Processing " + inFile.getName());
    String basename = FilenameUtils.removeExtension(inFile.getAbsolutePath());
    File txtFile = new File(basename + ".txt");

    index.reset();
    index.load(new FileInputStream(inFile));

    List<String> prefixes = FileUtils.readLines(txtFile);
    for (String p : prefixes) {
        log.trace("** checking " + p);
        Assert.assertTrue(index.isPrefix(p));
        Assert.assertTrue(index.isPrefix(Arrays.asList(StringUtils.split(p))));
    }
}

---

From source file:ch.cern.dss.teamcity.agent.util.ArchiveExtractor.java

/**
 * @param archivePath/*from   ww  w . jav  a 2  s.  c  o m*/
 * @return
 * @throws IOException
 * @throws InterruptedException
 */
public String rpm2cpio(String archivePath) throws IOException, InterruptedException {
    Loggers.AGENT.debug("Converting to cpio: " + archivePath);
    String cpioPath = FilenameUtils.removeExtension(archivePath) + ".cpio";
    String[] rpm2cpioCommand = { "/bin/sh", "-c", "/usr/bin/rpm2cpio " + archivePath + " > " + cpioPath };
    SystemCommandResult result = IOUtil.runSystemCommand(rpm2cpioCommand);
    Loggers.AGENT.debug("rpm2cpio returned with code " + result.getReturnCode());
    return cpioPath;
}

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