List of usage examples for org.apache.commons.beanutils PropertyUtils setSimpleProperty
public static void setSimpleProperty(Object bean, String name, Object value) throws IllegalAccessException, InvocationTargetException, NoSuchMethodException
Set the value of the specified simple property of the specified bean, with no type conversions.
For more details see PropertyUtilsBean.
From source file:org.bitsofinfo.util.address.usps.ais.store.hbase.HBaseStore.java
@Override public USPSRecord getByIdentifier(String identifier) throws StoreException { Class<? extends USPSRecord> clazz = null; try {// www . jav a 2s. c o m clazz = uspsIdGenerator.getRecordType(identifier); } catch (Exception e) { throw new StoreException("Error translating identifier into a target table type: " + identifier, e); } HTable table = getTable(clazz); if (table == null) { throw new StoreException("No target table exists for searching by identifier of " + identifier, null); } // lets create a get for the KV lookup Get g = new Get(Bytes.toBytes(identifier)); Result result = null; try { // exec the get result = table.get(g); } catch (Exception e) { throw new StoreException("There was an unexpected error fetching by identifier: " + identifier, e); } // not found?? if (result == null) { return null; } // create a dummy record USPSRecord record = null; try { record = clazz.newInstance(); } catch (Exception e) { throw new StoreException("Error constructing target object for class: " + clazz.getName(), e); } // get all columns Field[] columns = getFields(clazz); // family as bytes byte[] datacols = Bytes.toBytes(DATA_COL_FAMILY); // map to the properties for (Field column : columns) { byte[] bc = Bytes.toBytes(column.getName()); byte[] colVal = result.getValue(datacols, bc); if (colVal != null) { try { Object trueValue; // convert the copyright into the object if (column.getType() == Copyright.class) { record.setCopyright(getCopyright(new String(colVal))); } else { trueValue = ConvertUtils.convert(new String(colVal), column.getType()); PropertyUtils.setSimpleProperty(record, column.getName(), trueValue); } } catch (Exception e) { throw new StoreException("Error setting property for column: " + column.getName() + " with value " + new String(colVal), e); } } } try { table.close(); } catch (Exception e) { throw new StoreException( "Error closing table, when reading by identifier from target table: " + identifier, e); } return record; }
From source file:org.carewebframework.ui.zk.ZKUtil.java
/** * Recurses over all children of specified component that implement the Disable interface or a * "disabled" property and enables or disables them. * //from w w w. j ava2s .c o m * @param parent Parent whose children's disable status is to be modified. * @param disable The disable status for the children. */ public static void disableChildren(Component parent, boolean disable) { List<Component> children = parent.getChildren(); for (int i = children.size() - 1; i >= 0; i--) { Component comp = children.get(i); if (comp instanceof Disable) { ((Disable) comp).setDisabled(disable); } else { try { PropertyUtils.setSimpleProperty(comp, "disabled", disable); } catch (Exception e) { } } disableChildren(comp, disable); } }
From source file:org.couch4j.http.DatabaseImpl.java
public DatabaseImpl(CouchDbClient couchDb, HttpConnectionManager ht, String databaseName) { this.couchDb = couchDb; this.client = ht; this.name = databaseName; this.urlResolver = new UrlBuilder(couchDb, databaseName); changesService = new DatabaseChangeNotificationService(ht.getHttpClient(), urlResolver, this); // Check if the database exists, create if not try {//from w w w .j a va2 s .c om if (logger.isDebugEnabled()) { logger.debug("Check for database named {}", databaseName); } ht.jsonGet(urlResolver.baseUrl()); } catch (DocumentNotFoundException dnfe) { if (logger.isDebugEnabled()) { logger.debug("Database not found. Create new database '{}'", databaseName); } ht.jsonPut(urlResolver.baseUrl()); } config = new JsonConfig(); config.setPropertySetStrategy(new PropertySetStrategy() { @Override public void setProperty(Object bean, String key, Object value) throws JSONException { try { Field field = bean.getClass().getField(key); if (field != null) field.set(bean, value); } catch (Exception e) { try { PropertyUtils.setSimpleProperty(bean, key, value); } catch (Exception ex) { // Ignore - We simply ignore attributes in the // CouchDB document that are not available in the // class. } } } }); this.asyncDatabase = new AsyncDatabaseImpl(this); }
From source file:org.dcm4che3.conf.api.generic.ReflectiveConfig.java
/** * Walk through the <b>from</b> object and for each field annotated with * /*from w w w . ja va 2 s . c o m*/ * @ConfigField, copy the value by using getter/setter to the <b>to</b> * object. * * @param from * @param to */ public static <T> void reconfigure(T from, T to) { // look through all fields of the config class, not including // superclass fields for (Field field : from.getClass().getDeclaredFields()) { // if field is not annotated, skip it ConfigField fieldAnno = (ConfigField) field.getAnnotation(ConfigField.class); if (fieldAnno == null) continue; try { PropertyUtils.setSimpleProperty(to, field.getName(), PropertyUtils.getSimpleProperty(from, field.getName())); } catch (Exception e) { throw new RuntimeException("Unable to reconfigure a device!", e); } } }
From source file:org.dcm4che3.conf.core.adapters.ExtensionTypeAdaptor.java
@Override public Map<Class<?>, Object> fromConfigNode(Map<String, Object> configNode, AnnotatedConfigurableProperty property, BeanVitalizer vitalizer, Object parent) throws ConfigurationException { // figure out base extension class Class<Object> extensionBaseClass = null; try {//w w w. ja v a 2 s .com extensionBaseClass = (Class<Object>) property.getTypeForGenericsParameter(1); } catch (ClassCastException e) { throw new ConfigurationException( "Incorrectly annotated extensions field, parameter 1 must be an extension class", e); } Map<Class<?>, Object> extensionsMap = new HashMap<Class<?>, Object>(); for (Map.Entry<String, Object> entry : configNode.entrySet()) { try { // figure out current extension class List<Class<?>> extensionClasses = vitalizer.getContext(ConfigurationManager.class) .getExtensionClassesByBaseClass(extensionBaseClass); Class<?> extensionClass = Extensions.getExtensionClassBySimpleName(entry.getKey(), extensionClasses); // create empty extension bean Object extension = vitalizer.newInstance(extensionClass); // set parent so this field is accessible for use in extension bean's setters SetParentIntoField setParentIntoField = extensionBaseClass.getAnnotation(SetParentIntoField.class); if (setParentIntoField != null) try { PropertyUtils.setSimpleProperty(extension, setParentIntoField.value(), parent); } catch (Exception e) { throw new ConfigurationException( "Could not 'inject' parent object into field specified by 'SetParentIntoField' annotation. Field '" + setParentIntoField.value() + "'", e); } // proceed with deserialization new ReflectiveAdapter(extension).fromConfigNode((Map<String, Object>) entry.getValue(), new AnnotatedConfigurableProperty(extensionClass), vitalizer, parent); extensionsMap.put(extensionClass, extension); } catch (ClassNotFoundException e) { // noop log.debug("Extension class {} not found", entry.getKey()); } } return extensionsMap; }
From source file:org.dcm4che3.conf.core.adapters.ReflectiveAdapter.java
@Override public T fromConfigNode(Map<String, Object> configNode, AnnotatedConfigurableProperty property, BeanVitalizer vitalizer, Object parent) throws ConfigurationException { if (configNode == null) return null; Class<T> clazz = (Class<T>) property.getType(); if (!Map.class.isAssignableFrom(configNode.getClass())) throw new ConfigurationException( "Provided configuration node is not a map (type " + clazz.getName() + ")"); T confObj;/* w w w . j a va 2s . c o m*/ // create instance or use provided when it was created for us if (providedConfObj != null) confObj = providedConfObj; else confObj = getRelevantConfigurableInstance(configNode, vitalizer, clazz); // iterate and populate annotated fields for (AnnotatedConfigurableProperty fieldProperty : ConfigIterators.getAllConfigurableFields(clazz)) try { Object fieldValue = DefaultConfigTypeAdapters.delegateGetChildFromConfigNode(configNode, fieldProperty, vitalizer, confObj); PropertyUtils.setSimpleProperty(confObj, fieldProperty.getName(), fieldValue); } catch (Exception e) { throw new ConfigurationException( "Error while reading configuration property '" + fieldProperty.getAnnotatedName() + "' (field " + fieldProperty.getName() + ") in class " + clazz.getSimpleName(), e); } // iterate over setters for (ConfigIterators.AnnotatedSetter setter : ConfigIterators.getAllConfigurableSetters(clazz)) { try { // populate parameters for the setter Object[] args = new Object[setter.getParameters().size()]; int i = 0; for (AnnotatedConfigurableProperty paramProperty : setter.getParameters()) args[i++] = DefaultConfigTypeAdapters.delegateGetChildFromConfigNode(configNode, paramProperty, vitalizer, confObj); // invoke setter setter.getMethod().invoke(confObj, args); } catch (Exception e) { throw new ConfigurationException("Error while trying to initialize the object with method '" + setter.getMethod().getName() + "'", e); } } return confObj; }
From source file:org.dcm4che3.conf.core.api.internal.ConfigReflection.java
public static void setProperty(Object object, String propertyName, Object value) throws ReflectionAccessException { try {/* w w w . ja v a 2s .c o m*/ PropertyUtils.setSimpleProperty(object, propertyName, value); } catch (IllegalAccessException e) { throw new ReflectionAccessException( "Could not set property " + propertyName + " in class " + object.getClass().toString(), e); } catch (InvocationTargetException e) { throw new ReflectionAccessException( "Could not set property " + propertyName + " in class " + object.getClass().toString(), e); } catch (NoSuchMethodException e) { throw new ReflectionAccessException( "Could not set property " + propertyName + " in class " + object.getClass().toString(), e); } }
From source file:org.dcm4che3.conf.core.util.ConfigIterators.java
public static void reconfigure(Object source, Object target, Class configurableClass) { for (AnnotatedConfigurableProperty property : getAllConfigurableFields(configurableClass)) { try {//from w w w . j a va 2 s .com PropertyUtils.setSimpleProperty(target, property.getName(), PropertyUtils.getSimpleProperty(source, property.getName())); } catch (Exception e) { throw new RuntimeException("Unable to reconfigure instance of class " + property.getRawClass(), e); } } }
From source file:org.dllearner.scripts.NestedCrossValidation.java
private void validate(File confFile, int outerFolds, int innerFolds, String parameter, double startValue, double endValue, double stepsize, boolean verbose) throws IOException, ComponentInitException { CLI start = new CLI(confFile); start.init();/*from w w w . j a va 2 s.com*/ AbstractLearningProblem lp = start.getLearningProblem(); if (!(lp instanceof PosNegLP)) { System.out.println("Positive only learning not supported yet."); System.exit(0); } // get examples and shuffle them LinkedList<Individual> posExamples = new LinkedList<Individual>(((PosNegLP) lp).getPositiveExamples()); Collections.shuffle(posExamples, new Random(1)); LinkedList<Individual> negExamples = new LinkedList<Individual>(((PosNegLP) lp).getNegativeExamples()); Collections.shuffle(negExamples, new Random(2)); AbstractReasonerComponent rc = start.getReasonerComponent(); rc.init(); String baseURI = rc.getBaseURI(); List<TrainTestList> posLists = getFolds(posExamples, outerFolds); List<TrainTestList> negLists = getFolds(negExamples, outerFolds); // overall statistics Stat accOverall = new Stat(); Stat fOverall = new Stat(); Stat recallOverall = new Stat(); Stat precisionOverall = new Stat(); for (int currOuterFold = 0; currOuterFold < outerFolds; currOuterFold++) { logger.info("Outer fold " + currOuterFold); TrainTestList posList = posLists.get(currOuterFold); TrainTestList negList = negLists.get(currOuterFold); // measure relevant criterion (accuracy, F-measure) over different parameter values Map<Double, Stat> paraStats = new HashMap<Double, Stat>(); for (double currParaValue = startValue; currParaValue <= endValue; currParaValue += stepsize) { logger.info(" Parameter value " + currParaValue + ":"); // split train folds again (computation of inner folds for each parameter // value is redundant, but not a big problem) List<Individual> trainPosList = posList.getTrainList(); List<TrainTestList> innerPosLists = getFolds(trainPosList, innerFolds); List<Individual> trainNegList = negList.getTrainList(); List<TrainTestList> innerNegLists = getFolds(trainNegList, innerFolds); // measure relevant criterion for parameter (by default accuracy, // can also be F measure) Stat paraCriterionStat = new Stat(); for (int currInnerFold = 0; currInnerFold < innerFolds; currInnerFold++) { logger.info(" Inner fold " + currInnerFold + ":"); // get positive & negative examples for training run Set<Individual> posEx = new TreeSet<Individual>( innerPosLists.get(currInnerFold).getTrainList()); Set<Individual> negEx = new TreeSet<Individual>( innerNegLists.get(currInnerFold).getTrainList()); // read conf file and exchange options for pos/neg examples // and parameter to optimise start = new CLI(confFile); start.init(); AbstractLearningProblem lpIn = start.getLearningProblem(); ((PosNegLP) lpIn).setPositiveExamples(posEx); ((PosNegLP) lpIn).setNegativeExamples(negEx); AbstractCELA laIn = start.getLearningAlgorithm(); try { PropertyUtils.setSimpleProperty(laIn, parameter, currParaValue); } catch (IllegalAccessException | InvocationTargetException | NoSuchMethodException e) { e.printStackTrace(); } lpIn.init(); laIn.init(); laIn.start(); // evaluate learned expression Description concept = laIn.getCurrentlyBestDescription(); TreeSet<Individual> posTest = new TreeSet<Individual>( innerPosLists.get(currInnerFold).getTestList()); TreeSet<Individual> negTest = new TreeSet<Individual>( innerNegLists.get(currInnerFold).getTestList()); // true positive Set<Individual> posCorrect = rc.hasType(concept, posTest); // false negative Set<Individual> posError = Helper.difference(posTest, posCorrect); // false positive Set<Individual> negError = rc.hasType(concept, negTest); // true negative Set<Individual> negCorrect = Helper.difference(negTest, negError); // double posErrorRate = 100*(posError.size()/posTest.size()); // double negErrorRate = 100*(negError.size()/posTest.size()); double accuracy = 100 * ((double) (posCorrect.size() + negCorrect.size()) / (posTest.size() + negTest.size())); double precision = 100 * (double) posCorrect.size() / (posCorrect.size() + negError.size()) == 0 ? 0 : (posCorrect.size() + negError.size()); double recall = 100 * (double) posCorrect.size() / (posCorrect.size() + posError.size()) == 0 ? 0 : (posCorrect.size() + posError.size()); double fmeasure = 2 * (precision * recall) / (precision + recall) == 0 ? 0 : (precision + recall); paraCriterionStat.addNumber(accuracy); logger.info(" hypothesis: " + concept.toManchesterSyntaxString(baseURI, null)); logger.info(" accuracy: " + df.format(accuracy) + "%"); logger.info(" precision: " + df.format(precision) + "%"); logger.info(" recall: " + df.format(recall) + "%"); logger.info(" F measure: " + df.format(fmeasure) + "%"); if (verbose) { logger.info(" false positives (neg. examples classified as pos.): " + formatIndividualSet(posError, baseURI)); logger.info(" false negatives (pos. examples classified as neg.): " + formatIndividualSet(negError, baseURI)); } } paraStats.put(currParaValue, paraCriterionStat); Stat globalParaStat = globalParaStats.get(currParaValue); if (globalParaStat == null) { globalParaStat = new Stat(); globalParaStats.put(currParaValue, globalParaStat); } globalParaStat.add(paraCriterionStat); } // decide for the best parameter logger.info(" Summary over parameter values:"); double bestPara = startValue; double bestValue = Double.NEGATIVE_INFINITY; for (Entry<Double, Stat> entry : paraStats.entrySet()) { double para = entry.getKey(); Stat stat = entry.getValue(); logger.info(" value " + para + ": " + stat.prettyPrint("%")); if (stat.getMean() > bestValue) { bestPara = para; bestValue = stat.getMean(); } } logger.info(" selected " + bestPara + " as best parameter value (criterion value " + df.format(bestValue) + "%)"); logger.info(" Learn on Outer fold:"); // start a learning process with this parameter and evaluate it on the outer fold start = new CLI(confFile); start.init(); AbstractLearningProblem lpOut = start.getLearningProblem(); ((PosNegLP) lpOut) .setPositiveExamples(new TreeSet<Individual>(posLists.get(currOuterFold).getTrainList())); ((PosNegLP) lpOut) .setNegativeExamples(new TreeSet<Individual>(negLists.get(currOuterFold).getTrainList())); AbstractCELA laOut = start.getLearningAlgorithm(); try { PropertyUtils.setSimpleProperty(laOut, parameter, bestPara); } catch (IllegalAccessException | InvocationTargetException | NoSuchMethodException e) { e.printStackTrace(); } lpOut.init(); laOut.init(); laOut.start(); // evaluate learned expression Description concept = laOut.getCurrentlyBestDescription(); TreeSet<Individual> posTest = new TreeSet<Individual>(posLists.get(currOuterFold).getTestList()); TreeSet<Individual> negTest = new TreeSet<Individual>(negLists.get(currOuterFold).getTestList()); AbstractReasonerComponent rs = start.getReasonerComponent(); // true positive Set<Individual> posCorrect = rs.hasType(concept, posTest); // false negative Set<Individual> posError = Helper.difference(posTest, posCorrect); // false positive Set<Individual> negError = rs.hasType(concept, negTest); // true negative Set<Individual> negCorrect = Helper.difference(negTest, negError); double accuracy = 100 * ((double) (posCorrect.size() + negCorrect.size()) / (posTest.size() + negTest.size())); double precision = 100 * (double) posCorrect.size() / (posCorrect.size() + negError.size()); double recall = 100 * (double) posCorrect.size() / (posCorrect.size() + posError.size()); double fmeasure = 2 * (precision * recall) / (precision + recall); logger.info(" hypothesis: " + concept.toManchesterSyntaxString(baseURI, null)); logger.info(" accuracy: " + df.format(accuracy) + "%"); logger.info(" precision: " + df.format(precision) + "%"); logger.info(" recall: " + df.format(recall) + "%"); logger.info(" F measure: " + df.format(fmeasure) + "%"); if (verbose) { logger.info(" false positives (neg. examples classified as pos.): " + formatIndividualSet(posError, baseURI)); logger.info(" false negatives (pos. examples classified as neg.): " + formatIndividualSet(negError, baseURI)); } // update overall statistics accOverall.addNumber(accuracy); fOverall.addNumber(fmeasure); recallOverall.addNumber(recall); precisionOverall.addNumber(precision); // free memory rs.releaseKB(); } globalAcc.add(accOverall); globalF.add(fOverall); globalPrecision.add(precisionOverall); globalRecall.add(recallOverall); // overall statistics logger.info("*******************"); logger.info("* Overall Results *"); logger.info("*******************"); logger.info("accuracy: " + accOverall.prettyPrint("%")); logger.info("F measure: " + fOverall.prettyPrint("%")); logger.info("precision: " + precisionOverall.prettyPrint("%")); logger.info("recall: " + recallOverall.prettyPrint("%")); }
From source file:org.intermine.dwr.AjaxServices.java
/** * Update with the value given in input the field of the previous template * saved into the session//from w w w. j a v a 2 s . com * @param field the field to update * @param value the value */ public void updateTemplate(String field, String value) { HttpSession session = WebContextFactory.get().getSession(); boolean isNewTemplate = (session.getAttribute(Constants.NEW_TEMPLATE) != null) ? true : false; TemplateQuery templateQuery = (TemplateQuery) SessionMethods.getQuery(session); if (!isNewTemplate && session.getAttribute(Constants.PREV_TEMPLATE_NAME) == null) { session.setAttribute(Constants.PREV_TEMPLATE_NAME, templateQuery.getName()); } try { PropertyUtils.setSimpleProperty(templateQuery, field, value); } catch (Exception ex) { ex.printStackTrace(); } }