Example usage for javax.xml.parsers DocumentBuilderFactory setNamespaceAware

List of usage examples for javax.xml.parsers DocumentBuilderFactory setNamespaceAware

  1. HOME
  2. Java
  3. javax
  4. javax.xml.parsers.*
  5. DocumentBuilderFactory
  6. setNamespaceAware

Introduction

In this page you can find the example usage for javax.xml.parsers DocumentBuilderFactory setNamespaceAware.

Prototype


public void setNamespaceAware(boolean awareness)

Source Link

Document

Specifies that the parser produced by this code will provide support for XML namespaces.

Usage

From source file:com.occamlab.te.parsers.ImageParser.java

public static void main(String[] args) throws Exception {
    if (args.length < 2) {
        System.err.println("Parameters: xml_url image_url");
        return;//from www  .j  a  va 2 s  .com
    }

    java.net.URL xml_url;
    try {
        xml_url = new java.net.URL(args[0]);
    } catch (Exception e) {
        jlogger.log(Level.INFO, "Error building xmlurl, will prefix file://", e);

        xml_url = new java.net.URL("file://" + args[0]);
    }

    java.net.URL image_url;
    try {
        image_url = new java.net.URL(args[1]);
    } catch (Exception e) {
        jlogger.log(Level.INFO, "Error building xmlurl, will prefix file://", e);

        image_url = new java.net.URL("file://" + args[1]);
    }

    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    DocumentBuilder db = dbf.newDocumentBuilder();
    Document doc = db.parse(xml_url.openStream());
    // Element instruction = (Element)
    // doc.getElementsByTagNameNS("http://www.occamlab.com/te/parsers",
    // "ImageParser").item(0);
    Element instruction = (Element) doc.getDocumentElement();

    PrintWriter logger = new PrintWriter(System.out);
    InputStream image_is = image_url.openConnection().getInputStream();

    Document result = parse(image_is, instruction, logger);
    logger.flush();

    if (result != null) {
        TransformerFactory tf = TransformerFactory.newInstance();
        try {
            tf.setAttribute("http://saxon.sf.net/feature/strip-whitespace", "all");
        } catch (IllegalArgumentException e) {
            jlogger.log(Level.INFO, "setAttribute(\"http://saxon.sf.net/feature/strip-whitespace\", \"all\");",
                    e);

        }
        Transformer t = tf.newTransformer();
        t.setOutputProperty(OutputKeys.INDENT, "yes");
        t.transform(new DOMSource(result), new StreamResult(System.out));
    }

    System.exit(0);
}

From source file:InlineSchemaValidator.java

/** Main program entry point. */
public static void main(String[] argv) {

    // is there anything to do?
    if (argv.length == 0) {
        printUsage();/*from  w w w. j  ava  2 s.c  om*/
        System.exit(1);
    }

    // variables
    Vector schemas = null;
    Vector instances = null;
    HashMap prefixMappings = null;
    HashMap uriMappings = null;
    String docURI = argv[argv.length - 1];
    String schemaLanguage = DEFAULT_SCHEMA_LANGUAGE;
    int repetition = DEFAULT_REPETITION;
    boolean schemaFullChecking = DEFAULT_SCHEMA_FULL_CHECKING;
    boolean honourAllSchemaLocations = DEFAULT_HONOUR_ALL_SCHEMA_LOCATIONS;
    boolean validateAnnotations = DEFAULT_VALIDATE_ANNOTATIONS;
    boolean generateSyntheticAnnotations = DEFAULT_GENERATE_SYNTHETIC_ANNOTATIONS;
    boolean memoryUsage = DEFAULT_MEMORY_USAGE;

    // process arguments
    for (int i = 0; i < argv.length - 1; ++i) {
        String arg = argv[i];
        if (arg.startsWith("-")) {
            String option = arg.substring(1);
            if (option.equals("l")) {
                // get schema language name
                if (++i == argv.length) {
                    System.err.println("error: Missing argument to -l option.");
                } else {
                    schemaLanguage = argv[i];
                }
                continue;
            }
            if (option.equals("x")) {
                if (++i == argv.length) {
                    System.err.println("error: Missing argument to -x option.");
                    continue;
                }
                String number = argv[i];
                try {
                    int value = Integer.parseInt(number);
                    if (value < 1) {
                        System.err.println("error: Repetition must be at least 1.");
                        continue;
                    }
                    repetition = value;
                } catch (NumberFormatException e) {
                    System.err.println("error: invalid number (" + number + ").");
                }
                continue;
            }
            if (arg.equals("-a")) {
                // process -a: xpath expressions for schemas
                if (schemas == null) {
                    schemas = new Vector();
                }
                while (i + 1 < argv.length - 1 && !(arg = argv[i + 1]).startsWith("-")) {
                    schemas.add(arg);
                    ++i;
                }
                continue;
            }
            if (arg.equals("-i")) {
                // process -i: xpath expressions for instance documents
                if (instances == null) {
                    instances = new Vector();
                }
                while (i + 1 < argv.length - 1 && !(arg = argv[i + 1]).startsWith("-")) {
                    instances.add(arg);
                    ++i;
                }
                continue;
            }
            if (arg.equals("-nm")) {
                String prefix;
                String uri;
                while (i + 2 < argv.length - 1 && !(prefix = argv[i + 1]).startsWith("-")
                        && !(uri = argv[i + 2]).startsWith("-")) {
                    if (prefixMappings == null) {
                        prefixMappings = new HashMap();
                        uriMappings = new HashMap();
                    }
                    prefixMappings.put(prefix, uri);
                    HashSet prefixes = (HashSet) uriMappings.get(uri);
                    if (prefixes == null) {
                        prefixes = new HashSet();
                        uriMappings.put(uri, prefixes);
                    }
                    prefixes.add(prefix);
                    i += 2;
                }
                continue;
            }
            if (option.equalsIgnoreCase("f")) {
                schemaFullChecking = option.equals("f");
                continue;
            }
            if (option.equalsIgnoreCase("hs")) {
                honourAllSchemaLocations = option.equals("hs");
                continue;
            }
            if (option.equalsIgnoreCase("va")) {
                validateAnnotations = option.equals("va");
                continue;
            }
            if (option.equalsIgnoreCase("ga")) {
                generateSyntheticAnnotations = option.equals("ga");
                continue;
            }
            if (option.equalsIgnoreCase("m")) {
                memoryUsage = option.equals("m");
                continue;
            }
            if (option.equals("h")) {
                printUsage();
                continue;
            }
            System.err.println("error: unknown option (" + option + ").");
            continue;
        }
    }

    try {
        // Create new instance of inline schema validator.
        InlineSchemaValidator inlineSchemaValidator = new InlineSchemaValidator(prefixMappings, uriMappings);

        // Parse document containing schemas and validation roots
        DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
        dbf.setNamespaceAware(true);
        DocumentBuilder db = dbf.newDocumentBuilder();
        db.setErrorHandler(inlineSchemaValidator);
        Document doc = db.parse(docURI);

        // Create XPath factory for selecting schema and validation roots
        XPathFactory xpf = XPathFactory.newInstance();
        XPath xpath = xpf.newXPath();
        xpath.setNamespaceContext(inlineSchemaValidator);

        // Select schema roots from the DOM
        NodeList[] schemaNodes = new NodeList[schemas != null ? schemas.size() : 0];
        for (int i = 0; i < schemaNodes.length; ++i) {
            XPathExpression xpathSchema = xpath.compile((String) schemas.elementAt(i));
            schemaNodes[i] = (NodeList) xpathSchema.evaluate(doc, XPathConstants.NODESET);
        }

        // Select validation roots from the DOM
        NodeList[] instanceNodes = new NodeList[instances != null ? instances.size() : 0];
        for (int i = 0; i < instanceNodes.length; ++i) {
            XPathExpression xpathInstance = xpath.compile((String) instances.elementAt(i));
            instanceNodes[i] = (NodeList) xpathInstance.evaluate(doc, XPathConstants.NODESET);
        }

        // Create SchemaFactory and configure
        SchemaFactory factory = SchemaFactory.newInstance(schemaLanguage);
        factory.setErrorHandler(inlineSchemaValidator);

        try {
            factory.setFeature(SCHEMA_FULL_CHECKING_FEATURE_ID, schemaFullChecking);
        } catch (SAXNotRecognizedException e) {
            System.err.println("warning: SchemaFactory does not recognize feature ("
                    + SCHEMA_FULL_CHECKING_FEATURE_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println("warning: SchemaFactory does not support feature ("
                    + SCHEMA_FULL_CHECKING_FEATURE_ID + ")");
        }
        try {
            factory.setFeature(HONOUR_ALL_SCHEMA_LOCATIONS_ID, honourAllSchemaLocations);
        } catch (SAXNotRecognizedException e) {
            System.err.println("warning: SchemaFactory does not recognize feature ("
                    + HONOUR_ALL_SCHEMA_LOCATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println(
                    "warning: SchemaFactory does not support feature (" + HONOUR_ALL_SCHEMA_LOCATIONS_ID + ")");
        }
        try {
            factory.setFeature(VALIDATE_ANNOTATIONS_ID, validateAnnotations);
        } catch (SAXNotRecognizedException e) {
            System.err.println(
                    "warning: SchemaFactory does not recognize feature (" + VALIDATE_ANNOTATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println(
                    "warning: SchemaFactory does not support feature (" + VALIDATE_ANNOTATIONS_ID + ")");
        }
        try {
            factory.setFeature(GENERATE_SYNTHETIC_ANNOTATIONS_ID, generateSyntheticAnnotations);
        } catch (SAXNotRecognizedException e) {
            System.err.println("warning: SchemaFactory does not recognize feature ("
                    + GENERATE_SYNTHETIC_ANNOTATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println("warning: SchemaFactory does not support feature ("
                    + GENERATE_SYNTHETIC_ANNOTATIONS_ID + ")");
        }

        // Build Schema from sources
        Schema schema;
        {
            DOMSource[] sources;
            int size = 0;
            for (int i = 0; i < schemaNodes.length; ++i) {
                size += schemaNodes[i].getLength();
            }
            sources = new DOMSource[size];
            if (size == 0) {
                schema = factory.newSchema();
            } else {
                int count = 0;
                for (int i = 0; i < schemaNodes.length; ++i) {
                    NodeList nodeList = schemaNodes[i];
                    int nodeListLength = nodeList.getLength();
                    for (int j = 0; j < nodeListLength; ++j) {
                        sources[count++] = new DOMSource(nodeList.item(j));
                    }
                }
                schema = factory.newSchema(sources);
            }
        }

        // Setup validator and input source.
        Validator validator = schema.newValidator();
        validator.setErrorHandler(inlineSchemaValidator);

        try {
            validator.setFeature(SCHEMA_FULL_CHECKING_FEATURE_ID, schemaFullChecking);
        } catch (SAXNotRecognizedException e) {
            System.err.println(
                    "warning: Validator does not recognize feature (" + SCHEMA_FULL_CHECKING_FEATURE_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println(
                    "warning: Validator does not support feature (" + SCHEMA_FULL_CHECKING_FEATURE_ID + ")");
        }
        try {
            validator.setFeature(HONOUR_ALL_SCHEMA_LOCATIONS_ID, honourAllSchemaLocations);
        } catch (SAXNotRecognizedException e) {
            System.err.println(
                    "warning: Validator does not recognize feature (" + HONOUR_ALL_SCHEMA_LOCATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println(
                    "warning: Validator does not support feature (" + HONOUR_ALL_SCHEMA_LOCATIONS_ID + ")");
        }
        try {
            validator.setFeature(VALIDATE_ANNOTATIONS_ID, validateAnnotations);
        } catch (SAXNotRecognizedException e) {
            System.err
                    .println("warning: Validator does not recognize feature (" + VALIDATE_ANNOTATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println("warning: Validator does not support feature (" + VALIDATE_ANNOTATIONS_ID + ")");
        }
        try {
            validator.setFeature(GENERATE_SYNTHETIC_ANNOTATIONS_ID, generateSyntheticAnnotations);
        } catch (SAXNotRecognizedException e) {
            System.err.println("warning: Validator does not recognize feature ("
                    + GENERATE_SYNTHETIC_ANNOTATIONS_ID + ")");
        } catch (SAXNotSupportedException e) {
            System.err.println(
                    "warning: Validator does not support feature (" + GENERATE_SYNTHETIC_ANNOTATIONS_ID + ")");
        }

        // Validate instance documents
        for (int i = 0; i < instanceNodes.length; ++i) {
            NodeList nodeList = instanceNodes[i];
            int nodeListLength = nodeList.getLength();
            for (int j = 0; j < nodeListLength; ++j) {
                DOMSource source = new DOMSource(nodeList.item(j));
                source.setSystemId(docURI);
                inlineSchemaValidator.validate(validator, source, docURI, repetition, memoryUsage);
            }
        }
    } catch (SAXParseException e) {
        // ignore
    } catch (Exception e) {
        System.err.println("error: Parse error occurred - " + e.getMessage());
        if (e instanceof SAXException) {
            Exception nested = ((SAXException) e).getException();
            if (nested != null) {
                e = nested;
            }
        }
        e.printStackTrace(System.err);
    }
}

From source file:Gen.java

public static void main(String[] args) throws Exception {

    try {/*from ww w. ja v a  2  s.  c  o m*/

        File[] files = null;
        if (System.getProperty("dir") != null && !System.getProperty("dir").equals("")) {
            files = new File(System.getProperty("dir")).listFiles(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toUpperCase().endsWith(".XML");
                };
            });
        } else {
            String fileName = System.getProperty("file") != null && !System.getProperty("file").equals("")
                    ? System.getProperty("file")
                    : "rjmap.xml";
            files = new File[] { new File(fileName) };
        }

        log.info("files : " + Arrays.toString(files));

        if (files == null || files.length == 0) {
            log.info("no files to parse");
            System.exit(0);
        }

        boolean formatsource = true;
        if (System.getProperty("formatsource") != null && !System.getProperty("formatsource").equals("")
                && System.getProperty("formatsource").equalsIgnoreCase("false")) {
            formatsource = false;
        }

        GEN_ROOT = System.getProperty("outputdir");

        if (GEN_ROOT == null || GEN_ROOT.equals("")) {
            GEN_ROOT = new File(files[0].getAbsolutePath()).getParent() + FILE_SEPARATOR + "distrib";
        }

        GEN_ROOT = new File(GEN_ROOT).getAbsolutePath().replace('\\', '/');
        if (GEN_ROOT.endsWith("/"))
            GEN_ROOT = GEN_ROOT.substring(0, GEN_ROOT.length() - 1);

        System.out.println("GEN ROOT:" + GEN_ROOT);

        MAPPING_JAR_NAME = System.getProperty("mappingjar") != null
                && !System.getProperty("mappingjar").equals("") ? System.getProperty("mappingjar")
                        : "mapping.jar";
        if (!MAPPING_JAR_NAME.endsWith(".jar"))
            MAPPING_JAR_NAME += ".jar";

        GEN_ROOT_SRC = GEN_ROOT + FILE_SEPARATOR + "src";
        GEN_ROOT_LIB = GEN_ROOT + FILE_SEPARATOR + "";

        DocumentBuilderFactory domFactory = DocumentBuilderFactory.newInstance();
        domFactory.setNamespaceAware(true);
        domFactory.setValidating(false);
        DocumentBuilder documentBuilder = domFactory.newDocumentBuilder();

        for (int f = 0; f < files.length; ++f) {
            log.info("parsing file : " + files[f]);
            Document document = documentBuilder.parse(files[f]);

            Vector<Node> initNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "initScript",
                    initNodes);
            for (int i = 0; i < initNodes.size(); ++i) {
                NamedNodeMap attrs = initNodes.elementAt(i).getAttributes();
                boolean embed = attrs.getNamedItem("embed") != null
                        && attrs.getNamedItem("embed").getNodeValue().equalsIgnoreCase("true");
                StringBuffer vbuffer = new StringBuffer();
                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue());
                    vbuffer.append('\n');
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    vbuffer.append(Utils.getFileAsStringBuffer(fname));
                }
                initScriptBuffer.append(vbuffer);
                if (embed)
                    embedScriptBuffer.append(vbuffer);
            }

            Vector<Node> packageInitNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "scripts"), "packageScript",
                    packageInitNodes);
            for (int i = 0; i < packageInitNodes.size(); ++i) {
                NamedNodeMap attrs = packageInitNodes.elementAt(i).getAttributes();
                String packageName = attrs.getNamedItem("package").getNodeValue();

                if (packageName.equals(""))
                    packageName = "rGlobalEnv";

                if (!packageName.endsWith("Function"))
                    packageName += "Function";
                if (packageEmbedScriptHashMap.get(packageName) == null) {
                    packageEmbedScriptHashMap.put(packageName, new StringBuffer());
                }
                StringBuffer vbuffer = packageEmbedScriptHashMap.get(packageName);

                // if (!packageName.equals("rGlobalEnvFunction")) {
                // vbuffer.append("library("+packageName.substring(0,packageName.lastIndexOf("Function"))+")\n");
                // }

                if (attrs.getNamedItem("inline") != null) {
                    vbuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                    initScriptBuffer.append(attrs.getNamedItem("inline").getNodeValue() + "\n");
                } else {
                    String fname = attrs.getNamedItem("name").getNodeValue();
                    if (!fname.startsWith("\\") && !fname.startsWith("/") && fname.toCharArray()[1] != ':') {
                        String path = files[f].getAbsolutePath();
                        path = path.substring(0, path.lastIndexOf(FILE_SEPARATOR));
                        fname = new File(path + FILE_SEPARATOR + fname).getCanonicalPath();
                    }
                    StringBuffer fileBuffer = Utils.getFileAsStringBuffer(fname);
                    vbuffer.append(fileBuffer);
                    initScriptBuffer.append(fileBuffer);
                }
            }

            Vector<Node> functionsNodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "functions"), "function",
                    functionsNodes);
            for (int i = 0; i < functionsNodes.size(); ++i) {
                NamedNodeMap attrs = functionsNodes.elementAt(i).getAttributes();
                String functionName = attrs.getNamedItem("name").getNodeValue();

                boolean forWeb = attrs.getNamedItem("forWeb") != null
                        && attrs.getNamedItem("forWeb").getNodeValue().equalsIgnoreCase("true");

                String signature = (attrs.getNamedItem("signature") == null ? ""
                        : attrs.getNamedItem("signature").getNodeValue() + ",");
                String renameTo = (attrs.getNamedItem("renameTo") == null ? null
                        : attrs.getNamedItem("renameTo").getNodeValue());

                HashMap<String, FAttributes> sigMap = Globals._functionsToPublish.get(functionName);

                if (sigMap == null) {
                    sigMap = new HashMap<String, FAttributes>();
                    Globals._functionsToPublish.put(functionName, sigMap);

                    if (attrs.getNamedItem("returnType") == null) {
                        _functionsVector.add(new String[] { functionName });
                    } else {
                        _functionsVector.add(
                                new String[] { functionName, attrs.getNamedItem("returnType").getNodeValue() });
                    }

                }

                sigMap.put(signature, new FAttributes(renameTo, forWeb));

                if (forWeb)
                    _webPublishingEnabled = true;

            }

            if (System.getProperty("targetjdk") != null && !System.getProperty("targetjdk").equals("")
                    && System.getProperty("targetjdk").compareTo("1.5") < 0) {
                if (_webPublishingEnabled || (System.getProperty("ws.r.api") != null
                        && System.getProperty("ws.r.api").equalsIgnoreCase("true"))) {
                    log.info("be careful, web publishing disabled beacuse target JDK<1.5");
                }
                _webPublishingEnabled = false;
            } else {

                if (System.getProperty("ws.r.api") == null || System.getProperty("ws.r.api").equals("")
                        || !System.getProperty("ws.r.api").equalsIgnoreCase("false")) {
                    _webPublishingEnabled = true;
                }

                if (_webPublishingEnabled && System.getProperty("java.version").compareTo("1.5") < 0) {
                    log.info("be careful, web publishing disabled beacuse a JDK<1.5 is in use");
                    _webPublishingEnabled = false;
                }
            }

            Vector<Node> s4Nodes = new Vector<Node>();
            Utils.catchNodes(Utils.catchNode(document.getDocumentElement(), "s4classes"), "class", s4Nodes);

            if (s4Nodes.size() > 0) {
                String formalArgs = "";
                String signature = "";
                for (int i = 0; i < s4Nodes.size(); ++i) {
                    NamedNodeMap attrs = s4Nodes.elementAt(i).getAttributes();
                    String s4Name = attrs.getNamedItem("name").getNodeValue();
                    formalArgs += "p" + i + (i == s4Nodes.size() - 1 ? "" : ",");
                    signature += "'" + s4Name + "'" + (i == s4Nodes.size() - 1 ? "" : ",");
                }
                String genBeansScriptlet = "setGeneric('" + PUBLISH_S4_HEADER + "', function(" + formalArgs
                        + ") standardGeneric('" + PUBLISH_S4_HEADER + "'));" + "setMethod('" + PUBLISH_S4_HEADER
                        + "', signature(" + signature + ") , function(" + formalArgs + ") {   })";
                initScriptBuffer.append(genBeansScriptlet);
                _functionsVector.add(new String[] { PUBLISH_S4_HEADER, "numeric" });
            }

        }

        if (!new File(GEN_ROOT_LIB).exists())
            regenerateDir(GEN_ROOT_LIB);
        else {
            clean(GEN_ROOT_LIB, true);
        }

        for (int i = 0; i < rwebservicesScripts.length; ++i)
            DirectJNI.getInstance().getRServices().sourceFromResource(rwebservicesScripts[i]);

        String lastStatus = DirectJNI.getInstance().runR(new ExecutionUnit() {
            public void run(Rengine e) {
                DirectJNI.getInstance().toggleMarker();
                DirectJNI.getInstance().sourceFromBuffer(initScriptBuffer.toString());
                log.info(" init  script status : " + DirectJNI.getInstance().cutStatusSinceMarker());

                for (int i = 0; i < _functionsVector.size(); ++i) {

                    String[] functionPair = _functionsVector.elementAt(i);
                    log.info("dealing with : " + functionPair[0]);

                    regenerateDir(GEN_ROOT_SRC);

                    String createMapStr = "createMap(";
                    boolean isGeneric = e.rniGetBoolArrayI(
                            e.rniEval(e.rniParse("isGeneric(\"" + functionPair[0] + "\")", 1), 0))[0] == 1;

                    log.info("is Generic : " + isGeneric);
                    if (isGeneric) {
                        createMapStr += functionPair[0];
                    } else {
                        createMapStr += "\"" + functionPair[0] + "\"";
                    }
                    createMapStr += ", outputDirectory=\"" + GEN_ROOT_SRC
                            .substring(0, GEN_ROOT_SRC.length() - "/src".length()).replace('\\', '/') + "\"";
                    createMapStr += ", typeMode=\"robject\"";
                    createMapStr += (functionPair.length == 1 || functionPair[1] == null
                            || functionPair[1].trim().equals("") ? ""
                                    : ", S4DefaultTypedSig=TypedSignature(returnType=\"" + functionPair[1]
                                            + "\")");
                    createMapStr += ")";

                    log.info("------------------------------------------");
                    log.info("-- createMapStr=" + createMapStr);
                    DirectJNI.getInstance().toggleMarker();
                    e.rniEval(e.rniParse(createMapStr, 1), 0);
                    String createMapStatus = DirectJNI.getInstance().cutStatusSinceMarker();
                    log.info(" createMap status : " + createMapStatus);
                    log.info("------------------------------------------");

                    deleteDir(GEN_ROOT_SRC + "/org/kchine/r/rserviceJms");
                    compile(GEN_ROOT_SRC);
                    jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", null);

                    URL url = null;
                    try {
                        url = new URL(
                                "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar")
                                        .replace('\\', '/') + "!/");
                    } catch (Exception ex) {
                        ex.printStackTrace();
                    }
                    DirectJNI.generateMaps(url, true);
                }

            }
        });

        log.info(lastStatus);

        log.info(DirectJNI._rPackageInterfacesHash);
        regenerateDir(GEN_ROOT_SRC);
        for (int i = 0; i < _functionsVector.size(); ++i) {
            unjar(GEN_ROOT_LIB + FILE_SEPARATOR + TEMP_JARS_PREFIX + i + ".jar", GEN_ROOT_SRC);
        }

        regenerateRPackageClass(true);

        generateS4BeanRef();

        if (formatsource)
            applyJalopy(GEN_ROOT_SRC);

        compile(GEN_ROOT_SRC);

        for (String k : DirectJNI._rPackageInterfacesHash.keySet()) {
            Rmic rmicTask = new Rmic();
            rmicTask.setProject(_project);
            rmicTask.setTaskName("rmic_packages");
            rmicTask.setClasspath(new Path(_project, GEN_ROOT_SRC));
            rmicTask.setBase(new File(GEN_ROOT_SRC));
            rmicTask.setClassname(k + "ImplRemote");
            rmicTask.init();
            rmicTask.execute();
        }

        // DirectJNI._rPackageInterfacesHash=new HashMap<String,
        // Vector<Class<?>>>();
        // DirectJNI._rPackageInterfacesHash.put("org.bioconductor.packages.rGlobalEnv.rGlobalEnvFunction",new
        // Vector<Class<?>>());

        if (_webPublishingEnabled) {

            jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar", null);
            URL url = new URL(
                    "jar:file:" + (GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").replace('\\', '/') + "!/");
            ClassLoader cl = new URLClassLoader(new URL[] { url }, Globals.class.getClassLoader());

            for (String className : DirectJNI._rPackageInterfacesHash.keySet()) {
                if (cl.loadClass(className + "Web").getDeclaredMethods().length == 0)
                    continue;
                log.info("######## " + className);

                WsGen wsgenTask = new WsGen();
                wsgenTask.setProject(_project);
                wsgenTask.setTaskName("wsgen");

                FileSet rjb_fileSet = new FileSet();
                rjb_fileSet.setProject(_project);
                rjb_fileSet.setDir(new File("."));
                rjb_fileSet.setIncludes("RJB.jar");

                DirSet src_dirSet = new DirSet();
                src_dirSet.setDir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                Path classPath = new Path(_project);
                classPath.addFileset(rjb_fileSet);
                classPath.addDirset(src_dirSet);
                wsgenTask.setClasspath(classPath);
                wsgenTask.setKeep(true);
                wsgenTask.setDestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setResourcedestdir(new File(GEN_ROOT_LIB + FILE_SEPARATOR + "src/"));
                wsgenTask.setSei(className + "Web");

                wsgenTask.init();
                wsgenTask.execute();
            }

            new File(GEN_ROOT_LIB + FILE_SEPARATOR + "__temp.jar").delete();

        }

        embedRScripts();

        HashMap<String, String> marker = new HashMap<String, String>();
        marker.put("RJBMAPPINGJAR", "TRUE");

        Properties props = new Properties();
        props.put("PACKAGE_NAMES", PoolUtils.objectToHex(DirectJNI._packageNames));
        props.put("S4BEANS_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMapping));
        props.put("S4BEANS_REVERT_MAP", PoolUtils.objectToHex(DirectJNI._s4BeansMappingRevert));
        props.put("FACTORIES_MAPPING", PoolUtils.objectToHex(DirectJNI._factoriesMapping));
        props.put("S4BEANS_HASH", PoolUtils.objectToHex(DirectJNI._s4BeansHash));
        props.put("R_PACKAGE_INTERFACES_HASH", PoolUtils.objectToHex(DirectJNI._rPackageInterfacesHash));
        props.put("ABSTRACT_FACTORIES", PoolUtils.objectToHex(DirectJNI._abstractFactories));
        new File(GEN_ROOT_SRC + "/" + "maps").mkdirs();
        FileOutputStream fos = new FileOutputStream(GEN_ROOT_SRC + "/" + "maps/rjbmaps.xml");
        props.storeToXML(fos, null);
        fos.close();

        jar(GEN_ROOT_SRC, GEN_ROOT_LIB + FILE_SEPARATOR + MAPPING_JAR_NAME, marker);

        if (_webPublishingEnabled)
            genWeb();

        DirectJNI._mappingClassLoader = null;

    } finally {

        System.exit(0);

    }
}

From source file:Main.java

private static Document loadTestDocument(String url) throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setNamespaceAware(true);
    return factory.newDocumentBuilder().parse(new URL(url).openStream());
}

From source file:Main.java

public static Document generateDocument() throws ParserConfigurationException {
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    return dbf.newDocumentBuilder().newDocument();
}

From source file:Main.java

public static DocumentBuilder newBuilder() throws Exception {
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    dbf.setNamespaceAware(true);
    dbf.setIgnoringElementContentWhitespace(true);
    return dbf.newDocumentBuilder();
}

From source file:Main.java

public static DocumentBuilderFactory getDefaultFactory() {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setNamespaceAware(true);
    return factory;
}

From source file:Main.java

private static DocumentBuilder newDocumentBuilder() throws ParserConfigurationException {
    DocumentBuilderFactory domFactory = DocumentBuilderFactory.newInstance();
    domFactory.setNamespaceAware(false);
    return domFactory.newDocumentBuilder();
}

From source file:Main.java

public static org.w3c.dom.Document readXML(String xmlString) throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setNamespaceAware(true);
    DocumentBuilder builder = factory.newDocumentBuilder();
    return builder.parse(new ByteArrayInputStream(xmlString.getBytes()));
}

From source file:Main.java

public static Document parseToDom(String content) throws Exception {
    DocumentBuilderFactory factory = DocumentBuilderFactory.newInstance();
    factory.setNamespaceAware(false);
    DocumentBuilder builder = factory.newDocumentBuilder();
    return builder.parse(new ByteArrayInputStream(content.getBytes()));
}