Example usage for javax.xml.bind Marshaller marshal

List of usage examples for javax.xml.bind Marshaller marshal

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Introduction

In this page you can find the example usage for javax.xml.bind Marshaller marshal.

Prototype

public void marshal(Object jaxbElement, javax.xml.stream.XMLEventWriter writer) throws JAXBException;

Source Link

Document

Marshal the content tree rooted at jaxbElement into a javax.xml.stream.XMLEventWriter .

Usage

From source file:edu.duke.cabig.c3pr.webservice.integration.SubjectRegistryWebServicePerformanceTest.java

private void importStudySubjects(int sbegin, int send, int pbegin, int pend, String batch) throws Exception {
    SubjectRegistry service = getService();

    // successful creation
    final ImportStudySubjectRegistryRequest request = new ImportStudySubjectRegistryRequest();
    request.setStudySubjects(new DSETStudySubject());
    //String batch = "";
    for (int start = sbegin; start < send; start++) {
        int study = start;
        //batch += "-"+(400-20*(study-500));
        for (int subject = pbegin; subject < pend; subject++) {
            StudySubject studySubject = createStudySubjectForImport();
            //Override some values
            ((Person) studySubject.getEntity()).setRaceCode(iso.DSETCD(iso.CD(RACE_WHITE)));
            ((Person) studySubject.getEntity()).setTelecomAddress(iso.BAGTEL(iso.TEL(TEST_EMAIL_ADDR_ISO)));
            ((Person) studySubject.getEntity()).getBiologicEntityIdentifier().get(0).getIdentifier()
                    .setExtension(subject + "");

            studySubject.getSubjectIdentifier().get(0).getIdentifier()
                    .setExtension(RandomStringUtils.randomAlphanumeric(6) + "--" + batch);
            studySubject.getSubjectIdentifier().get(0).setPrimaryIndicator(iso.BL(true));

            studySubject.getStudySubjectProtocolVersion().getStudySiteProtocolVersion()
                    .getStudyProtocolVersion().getStudyProtocolDocument().getDocument().getDocumentIdentifier()
                    .get(0).getIdentifier().setExtension(study + "");

            //add 1st consent
            studySubject.getStudySubjectProtocolVersion().getStudySubjectConsentVersion().clear();
            StudySubjectConsentVersion studySubjectConsentVersion = new StudySubjectConsentVersion();
            studySubjectConsentVersion.setConsentDeliveryDate(iso.TSDateTime(TEST_CONSENT_DELIVERY_DATE1));
            studySubjectConsentVersion.setInformedConsentDate(iso.TSDateTime(TEST_CONSENT_SIGNED_DATE1));
            studySubjectConsentVersion.setConsentingMethod(iso.CD(TEST_CONSENTING_METHOD1));
            studySubjectConsentVersion.setConsentPresenter(iso.ST(TEST_CONSENT_PRESENTER1));
            studySubjectConsentVersion.setConsent(new DocumentVersion());
            studySubjectConsentVersion.getConsent().setOfficialTitle(iso.ST(TEST_CONSENT_NAME1));
            studySubjectConsentVersion.getConsent().setVersionNumberText(iso.ST(TEST_CONSENT_VERSION1));
            PerformedStudySubjectMilestone subjectAnswer = new PerformedStudySubjectMilestone();
            subjectAnswer.setMissedIndicator(iso.BL(TEST_CONSENT_ANS11));
            subjectAnswer.setConsentQuestion(new DocumentVersion());
            subjectAnswer.getConsentQuestion().setOfficialTitle(iso.ST(TEST_CONSENT_QUES11));
            studySubjectConsentVersion.getSubjectConsentAnswer().add(subjectAnswer);
            studySubject.getStudySubjectProtocolVersion().getStudySubjectConsentVersion()
                    .add(studySubjectConsentVersion);

            request.getStudySubjects().getItem().add(studySubject);
        }/*  w  w  w.j  a v a2 s . c  o m*/
    }

    JAXBContext context = JAXBContext.newInstance("edu.duke.cabig.c3pr.webservice.subjectregistry");
    Marshaller marshaller = context.createMarshaller();
    marshaller.marshal(request, System.out);
    System.out.flush();
    DSETStudySubject createdStudySubjects = service.importSubjectRegistry(request).getStudySubjects();
    assertNotNull(createdStudySubjects);
    //      assertEquals(scount*pcount, createdStudySubjects.getItem().size());
}

From source file:com.hp.octane.integrations.uft.items.UftTestDiscoveryResult.java

public void writeToFile(File fileToWriteTo) throws JAXBException {

    JAXBContext jaxbContext = JAXBContext.newInstance(UftTestDiscoveryResult.class);
    Marshaller jaxbMarshaller = jaxbContext.createMarshaller();

    jaxbMarshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
    jaxbMarshaller.marshal(this, fileToWriteTo);
}

From source file:it.geosolutions.geobatch.unredd.script.util.GeoStoreUtil.java

/**
 * Delete a resource./*  w w w .  j  a  v  a2s.c  om*/
 * Delete the resource identified by id.
 *
 * @param id
 */
@Override
public void delete(long id) throws GeoStoreException {

    try {
        RESTResource resource = new RESTResource();
        resource.setId(id);

        // this part creates the file to feed the GeoStoreAction
        File inputFile = File.createTempFile("Delete", ".xml", tempDir);
        Marshaller m = JAXBMarshallerBuilder.getJAXBMarshaller(resource.getClass());
        m.marshal(resource, inputFile);

        GeostoreActionConfiguration geoStoreCfg = createConfiguration();
        geoStoreCfg.setShortResource(true);
        geoStoreCfg.setOperation(GeostoreOperation.Operation.DELETE);

        GeostoreAction action = new GeostoreAction(geoStoreCfg);
        action.setTempDir(tempDir);

        SingleFileActionExecutor.execute(action, inputFile);
    } catch (Exception ex) {
        throw new GeoStoreException("Error while deleting resource " + id, ex);
    }
}

From source file:com.retroduction.carma.eventlisteners.ReportEventListener.java

public void destroy() {

    this.log.info("Finishing XML report");

    this.runProcessingEnd = System.currentTimeMillis();

    new StatisticalReportAnalyzer().enhanceReport(this.run);

    try {/*from w w w.j  a  v  a  2s  .c o  m*/
        if (this.writeTimingInfo) {
            ProcessingInfo info = this.createTimingInformation(this.runProcessingStart, this.runProcessingEnd);
            this.run.setProcessingInfo(info);
        }
    } catch (DatatypeConfigurationException e) {
        e.printStackTrace();
    }

    try {
        JAXBContext context = JAXBContext.newInstance(MutationRun.class);
        Marshaller marshaller = context.createMarshaller();
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        marshaller.marshal(this.run, new FileOutputStream(new File(this.outputFile)));
    } catch (JAXBException e) {
        e.printStackTrace();
    } catch (FileNotFoundException e) {
        e.printStackTrace();
    }

}

From source file:it.geosolutions.geobatch.unredd.script.util.GeoStoreUtil.java

/**
 * Generic search in GeoStoreUtil.//from ww  w .  j ava 2  s  .  c  om
 *
 * @param filter the filter to apply for searching
 * @param getShortResource true if a list of resource is required, false if a RESTResource list is sufficient
 *
 * @return always a not null list
 */
//    @Override
protected List search(SearchFilter filter, boolean getShortResource, String fileNameHint)
        throws GeoStoreException {
    File tmpFile = null;

    try {
        tmpFile = File.createTempFile(fileNameHint, ".xml", tempDir);

        Marshaller m = JAXBMarshallerBuilder.getJAXBMarshaller(filter.getClass());
        m.marshal(filter, tmpFile);

        GeostoreActionConfiguration geoStoreCfg = createConfiguration();
        geoStoreCfg.setShortResource(getShortResource);
        geoStoreCfg.setOperation(GeostoreOperation.Operation.SEARCH);

        GeostoreAction action = new GeostoreAction(geoStoreCfg);
        action.setTempDir(tempDir);

        SingleFileActionExecutor.execute(action, tmpFile);

        List ret = getShortResource ? action.getShortResourceList() : action.getResourceList();
        return ret == null ? Collections.EMPTY_LIST : ret;

    } catch (Exception e) {
        throw new GeoStoreException("Error while searching in GeoStore", e);
    } finally {
        FileUtils.deleteQuietly(tmpFile); // we're putting the temp file in a working dir, so this delete is probably useless
    }
}

From source file:it.geosolutions.geobatch.unredd.script.util.GeoStoreUtil.java

@Override
public void updateData(long id, String data) throws GeoStoreException {
    if (LOGGER.isDebugEnabled()) {
        LOGGER.debug("Updating data for resource " + id);
    }/*  www  . j  av a 2s . c o  m*/

    // this part creates the file to feed the GeoStoreAction
    File tmpFile = null;
    try {
        RESTResource resource = new RESTResource(); // this is just a packaging for id+data
        resource.setId(id);
        resource.setData(data);
        tmpFile = File.createTempFile("UpdateData", ".xml", tempDir);
        Marshaller m = JAXBMarshallerBuilder.getJAXBMarshaller(resource.getClass());
        m.marshal(resource, tmpFile);

        GeostoreActionConfiguration geoStoreCfg = createConfiguration();
        geoStoreCfg.setShortResource(true);
        geoStoreCfg.setOperation(GeostoreOperation.Operation.UPDATEDATA);

        GeostoreAction action = new GeostoreAction(geoStoreCfg);
        action.setTempDir(tempDir);

        SingleFileActionExecutor.execute(action, tmpFile);
    } catch (Exception ex) {
        throw new GeoStoreException("Exception while updating data", ex);
    } finally {
        FileUtils.deleteQuietly(tmpFile); // we're putting the temp file in a working dir, so this delete is probably useless
    }
}

From source file:it.geosolutions.geobatch.unredd.script.util.GeoStoreUtil.java

/**
 * generic insert into geostore/*  ww  w .  ja v  a2  s  .  c om*/
 *
 * @param resource the resource to insert
 * @throws GeoStoreException 
 */
@Override
public Long insert(RESTResource resource) throws GeoStoreException {
    if (LOGGER.isDebugEnabled()) {
        LOGGER.debug("Creating " + resource.getCategory().getName() + " --> " + resource.getName());
    }

    String hintName = resource.getCategory().getName() + "_" + resource.getName();
    // this part creates the file to feed the GeoStoreAction
    File tmpFile = null;
    try {
        tmpFile = File.createTempFile("Insert_" + hintName, ".xml", tempDir);
        Marshaller m = JAXBMarshallerBuilder.getJAXBMarshaller(resource.getClass());
        m.marshal(resource, tmpFile);

        GeostoreActionConfiguration geoStoreCfg = createConfiguration();
        geoStoreCfg.setShortResource(true);
        geoStoreCfg.setOperation(GeostoreOperation.Operation.INSERT);

        GeostoreAction action = new GeostoreAction(geoStoreCfg);
        action.setTempDir(tempDir);

        SingleFileActionExecutor.execute(action, tmpFile);
        return null; // no id here
    } catch (Exception e) {
        LOGGER.error("Error while inserting in GeoStore: " + resource);
        throw new GeoStoreException("Error while inserting in GeoStore", e);
    } finally {
        FileUtils.deleteQuietly(tmpFile); // we're putting the temp file in a working dir, so this delete is probably useless
    }
}

From source file:org.geosdi.geoplatform.connector.CatalogContextTest.java

@Test
public void testJAXBContext() throws JAXBException {
    Assert.assertNotNull(cswContext);/* www  .  ja  v  a  2s  .  com*/

    Unmarshaller m = cswContext.acquireUnmarshaller();

    try {

        if (entity != null) {
            InputStream content = entity.getContent();

            CapabilitiesType cap = ((JAXBElement<CapabilitiesType>) m.unmarshal(content)).getValue();

            logger.info("CSW GET_CAPABILITIES VERSION @@@@@@@@@@@@@@@@@@@@@@@ " + cap.getVersion());

            logger.info("CSW SERVICE IDENTIFICATION @@@@@@@@@@ " + cap.getServiceIdentification());

            String cswFile = "target/csw.xml";

            Marshaller ma = cswContext.acquireMarshaller();

            FileOutputStream fos = null;

            try {
                fos = new FileOutputStream(cswFile);
                ma.marshal(cap, fos);
            } finally {
                if (fos != null) {
                    fos.close();
                }
            }

        }
    } catch (IOException ex) {
        logger.error("@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@ " + ex.getMessage());
    }
}

From source file:org.axiom_tools.codecs.ModelCodec.java

/**
 * Converts a model to XML./*from  w ww .  jav a  2  s  . co  m*/
 * @return model XML, or empty
 */
public String toXML() {
    try {
        ByteArrayOutputStream stream = new ByteArrayOutputStream();
        Marshaller m = buildJAXBContext().createMarshaller();
        m.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
        m.setProperty(Marshaller.JAXB_FRAGMENT, Boolean.TRUE);
        m.marshal(this.entity, stream);
        return stream.toString(XML_ENCODING).trim();
    } catch (Exception e) {
        Log.error(e.getMessage(), e);
        return Empty;
    }
}

From source file:org.usd.edu.btl.cli.ConvertBets.java

public void toGalaxy(String input, String output) {
    InputStream infile = null;//from www.  j  a v  a 2  s .c o  m
    Tool myTool = null;
    try {
        JAXBContext jaxbContext = JAXBContext.newInstance(Tool.class);
        Unmarshaller unmarshaller = jaxbContext.createUnmarshaller(); //Unmarshalling  Convert XML content into a Java Object.
        infile = new FileInputStream("./test_inputs/test_galaxy.xml");
        Tool test_tool = (Tool) unmarshaller.unmarshal(infile);
        myTool = test_tool;
        //System.out.println(test_tool.toString()); //print the test_tool 

    } catch (FileNotFoundException e) {
        System.err.println(e.getMessage());
    } catch (JAXBException e) {
        System.err.println(e.getMessage());
    } finally {
        try {
            if (infile != null) {
                infile.close();
            }
        } catch (IOException e) {
            System.err.println("You're rubbish, you can't even close a file");
            System.err.println(e.getMessage());
        }
    }

    //JAXB-Marshall Java back to XML
    try {
        JAXBContext jaxbContext = JAXBContext.newInstance(Tool.class);
        Marshaller marshaller = jaxbContext.createMarshaller(); //Marshalling  Convert a Java object into a XML file.
        marshaller.marshal(myTool, System.out); //print XML out
    } catch (JAXBException e) {
        System.err.println("JAXB dun goofed");
        System.err.println(e.getMessage());
    }
    // RUN GALAXY TO BETS CONVERSION
    BETSV1 betsOutput = GalaxyConverter.toBETS(myTool);
    try {
        System.err.println("************************************************\n"
                + "*********PRINTING OUT CONVERSION************\n" + "----------Galaxy --> Bets--------------\n"
                + "************************************************\n");
        //print objects as Json using jackson
        System.err.println("=== BLD TO BETS JSON === \n");
        System.out.println(betsOutput);
    } catch (Exception e) {
        System.err.println(e.getMessage());
    }
}