List of usage examples for javax.xml.bind JAXBIntrospector getElementName
public abstract QName getElementName(Object jaxbElement);
Get xml element qname for jaxbElement.
From source file:Main.java
public static void main(String[] args) throws Exception { Object value = "Hello World"; JAXBContext jc = JAXBContext.newInstance(String.class, Bar.class); JAXBIntrospector introspector = jc.createJAXBIntrospector(); Marshaller marshaller = jc.createMarshaller(); if (null == introspector.getElementName(value)) { JAXBElement jaxbElement = new JAXBElement(new QName("ROOT"), Object.class, value); marshaller.marshal(jaxbElement, System.out); } else {/*from ww w . j a v a 2 s . c o m*/ marshaller.marshal(value, System.out); } }
From source file:example.Main.java
public static void main(String[] args) throws Exception { Class[] classes = new Class[3]; classes[0] = A.class; classes[1] = B.class; classes[2] = C.class; JAXBContext jc = JAXBContext.newInstance(classes); JAXBIntrospector ji = jc.createJAXBIntrospector(); Map<QName, Class> classByQName = new HashMap<QName, Class>(classes.length); for (Class clazz : classes) { QName qName = ji.getElementName(clazz.newInstance()); if (null != qName) { classByQName.put(qName, clazz); }/*from w w w . j av a 2 s. c o m*/ } QName qName = new QName("http://www.example.com", "EH"); System.out.println(classByQName.get(qName)); }
From source file:com.autentia.xml.namespace.QNameBuilder.java
private QName discoverQNameFromJaxb(Class<?> classType) { QName qName = null;/* w w w. j av a 2 s. com*/ try { final JAXBIntrospector jaxbIntrospector = JAXBContext.newInstance(classType).createJAXBIntrospector(); qName = jaxbIntrospector.getElementName(classType.getConstructor().newInstance()); } catch (Exception e) { // Add e to the logger message because JAXB Exceptions has a lot of information in the toString(). // and some loggers implementations just print the getMessage(); logger.warn("Cannot discover QName from JAXB annotations for class: " + classType.getName() + ". Preparing generic QName." + e, e); } if (qName == null) { // Could be null if getElementName returned null, or a exception was thrown. return EMPTY_Q_NAME; } return qName; }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getDrugMetaData(final Patient patient, final BiospecimenMetaData patientMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws ProcessorException, UUIDException { if (patient.getDrugs() != null) { List<Drug> drugs = patient.getDrugs().getDrug(); if (drugs != null) { // Get drug meta-data for the patient for (final Drug drug : drugs) { BiospecimenMetaData drugMetaData = BiospecimenMetaData.newInstance(patientMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(drug.getBcrDrugUuid()); drugMetaData.setBarcode(drug.getBcrDrugBarcode().getValue()); setUUID(drugMetaData, uuid, archive); drugMetaData.setUuidType(jaxbIntrospector.getElementName(drug).getLocalPart()); biospecimenMetaDataByUUIDORBarcode.put( (uuid == null || uuid.isEmpty()) ? drugMetaData.getBarcode() : drugMetaData.getUuid(), drugMetaData);// w w w .j a va 2s.c om } } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getSampleMetaData(final Patient patient, final BiospecimenMetaData patientMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws UUIDException, ProcessorException { if (patient.getSamples() != null) { List<Sample> samples = patient.getSamples().getSample(); if (samples != null) { // Get sample meta-data for the patient for (final Sample sample : samples) { BiospecimenMetaData sampleMetaData = BiospecimenMetaData.newInstance(patientMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(sample.getBcrSampleUuid()); sampleMetaData.setBarcode(sample.getBcrSampleBarcode().getValue()); setUUID(sampleMetaData, uuid, archive); sampleMetaData.setUuidType(jaxbIntrospector.getElementName(sample).getLocalPart()); sampleMetaData.setSampleType(sample.getSampleTypeId().getValue()); sampleMetaData.setVialId(sample.getVialNumber().getValue()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? sampleMetaData.getBarcode() : sampleMetaData.getUuid(), sampleMetaData); getPortionMetaData(sample, sampleMetaData, biospecimenMetaDataByUUIDORBarcode, jaxbIntrospector, archive);/*from w w w . j ava 2 s.c o m*/ logger.debug("Portion metadata done"); getShipmentPortionMetaData(sample, sampleMetaData, biospecimenMetaDataByUUIDORBarcode, jaxbIntrospector, archive); logger.debug("Shipment Portion metadata done"); } } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getPortionMetaData(final Sample sample, final BiospecimenMetaData sampleMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws UUIDException, ProcessorException { if (sample.getPortions() != null) { List<Portion> portions = sample.getPortions().getPortion(); if (portions != null) { // Get portion meta-data for the sample for (final Portion portion : portions) { BiospecimenMetaData portionMetaData = BiospecimenMetaData.newInstance(sampleMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(portion.getBcrPortionUuid()); portionMetaData.setBarcode(portion.getBcrPortionBarcode().getValue()); setUUID(portionMetaData, uuid, archive); portionMetaData.setUuidType(jaxbIntrospector.getElementName(portion).getLocalPart()); portionMetaData.setPortionId(portion.getPortionNumber().getValue()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? portionMetaData.getBarcode() : portionMetaData.getUuid(), portionMetaData); getAnalyteMetaData(portion, portionMetaData, biospecimenMetaDataByUUIDORBarcode, jaxbIntrospector, archive); logger.debug("Analyte metadata done"); getSlideMetaData(portion, portionMetaData, biospecimenMetaDataByUUIDORBarcode, jaxbIntrospector, archive);/* ww w .j a v a 2s .c o m*/ logger.debug("Slide metadata done"); } } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getAliquotMetaData(final Analyte analyte, final BiospecimenMetaData analyteMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws ProcessorException, UUIDException { if (analyte.getAliquots() != null) { List<Aliquot> aliquots = analyte.getAliquots().getAliquot(); if (aliquots != null) { // Get aliquot meta-data for the analyte for (final Aliquot aliquot : aliquots) { BiospecimenMetaData aliquotMetaData = BiospecimenMetaData.newInstance(analyteMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(aliquot.getBcrAliquotUuid()); aliquotMetaData.setBarcode(aliquot.getBcrAliquotBarcode().getValue()); setUUID(aliquotMetaData, uuid, archive); aliquotMetaData.setUuidType(jaxbIntrospector.getElementName(aliquot).getLocalPart()); aliquotMetaData.setPlateId(aliquot.getPlateId().getValue()); aliquotMetaData.setReceivingCenter(aliquot.getCenterId().getValue()); aliquotMetaData.setCenterCode(aliquot.getCenterId().getValue()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? aliquotMetaData.getBarcode() : aliquotMetaData.getUuid(), aliquotMetaData); }//from ww w . j av a 2 s. co m } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getSurgeryMetaData(final Patient patient, final BiospecimenMetaData patientMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws ProcessorException, UUIDException { if (patient.getSurgeries() != null) { List<Surgery> surgeries = patient.getSurgeries().getSurgery(); if (surgeries != null) { // Get surgery meta-data for the patient for (final Surgery surgery : surgeries) { BiospecimenMetaData surgeryMetaData = BiospecimenMetaData.newInstance(patientMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(surgery.getBcrSurgeryUuid()); surgeryMetaData.setBarcode(surgery.getBcrSurgeryBarcode().getValue()); setUUID(surgeryMetaData, uuid, archive); surgeryMetaData.setUuidType(jaxbIntrospector.getElementName(surgery).getLocalPart()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? surgeryMetaData.getBarcode() : surgeryMetaData.getUuid(), surgeryMetaData); }//from www. j ava 2 s . c o m } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getAnalyteMetaData(final Portion portion, final BiospecimenMetaData portionMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws ProcessorException, UUIDException { if (portion.getAnalytes() != null) { List<Analyte> analytes = portion.getAnalytes().getAnalyte(); if (analytes != null) { // Get portion meta-data for the sample for (final Analyte analyte : analytes) { BiospecimenMetaData analyteMetaData = BiospecimenMetaData.newInstance(portionMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(analyte.getBcrAnalyteUuid()); analyteMetaData.setBarcode(analyte.getBcrAnalyteBarcode().getValue()); setUUID(analyteMetaData, uuid, archive); analyteMetaData.setUuidType(jaxbIntrospector.getElementName(analyte).getLocalPart()); analyteMetaData.setAnalyteType(analyte.getAnalyteTypeId().getValue()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? analyteMetaData.getBarcode() : analyteMetaData.getUuid(), analyteMetaData); getAliquotMetaData(analyte, analyteMetaData, biospecimenMetaDataByUUIDORBarcode, jaxbIntrospector, archive); logger.debug("Aliquot metadata done"); logger.info("BiospecimenMetaDataProcessor: Processed analyte with UUID " + analyteMetaData.getUuid() + " and parent " + analyteMetaData.getParentUUID()); }/*from w w w.j av a 2 s. c o m*/ } } }
From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.action.BiospecimenMetaDataProcessor.java
private void getRadiationMetaData(final Patient patient, final BiospecimenMetaData patientMetaData, final Map<String, BiospecimenMetaData> biospecimenMetaDataByUUIDORBarcode, final JAXBIntrospector jaxbIntrospector, final Archive archive) throws ProcessorException, UUIDException { if (patient.getRadiations() != null) { List<Radiation> radiations = patient.getRadiations().getRadiation(); if (radiations != null) { // Get radiation meta-data for the patient for (final Radiation radiation : radiations) { BiospecimenMetaData radiationMetaData = BiospecimenMetaData.newInstance(patientMetaData); final String uuid = JAXBUtil.getJAXBObjectValue(radiation.getBcrRadiationUuid()); radiationMetaData.setBarcode(radiation.getBcrRadiationBarcode().getValue()); setUUID(radiationMetaData, uuid, archive); radiationMetaData.setUuidType(jaxbIntrospector.getElementName(radiation).getLocalPart()); biospecimenMetaDataByUUIDORBarcode .put((uuid == null || uuid.isEmpty()) ? radiationMetaData.getBarcode() : radiationMetaData.getUuid(), radiationMetaData); }/*from w w w.j a va 2 s. c o m*/ } } }