Example usage for javax.xml.bind JAXBContext createMarshaller

Introduction

In this page you can find the example usage for javax.xml.bind JAXBContext createMarshaller.

Prototype

public abstract Marshaller createMarshaller() throws JAXBException;

Source Link

Document

Create a Marshaller object that can be used to convert a java content tree into XML data.

Usage

From source file:com.github.lindenb.jvarkit.tools.blast.BlastFilterJS.java

@Override
protected Collection<Throwable> call(String inputName) throws Exception {

    final CompiledScript compiledScript;
    Unmarshaller unmarshaller;//w  ww. j a  v a2 s .  com
    Marshaller marshaller;
    try {
        compiledScript = super.compileJavascript();

        JAXBContext jc = JAXBContext.newInstance("gov.nih.nlm.ncbi.blast");

        unmarshaller = jc.createUnmarshaller();
        marshaller = jc.createMarshaller();

        XMLInputFactory xmlInputFactory = XMLInputFactory.newFactory();
        xmlInputFactory.setProperty(XMLInputFactory.IS_NAMESPACE_AWARE, Boolean.TRUE);
        xmlInputFactory.setProperty(XMLInputFactory.IS_COALESCING, Boolean.TRUE);
        xmlInputFactory.setProperty(XMLInputFactory.IS_REPLACING_ENTITY_REFERENCES, Boolean.TRUE);
        xmlInputFactory.setProperty(XMLInputFactory.IS_SUPPORTING_EXTERNAL_ENTITIES, Boolean.FALSE);
        marshaller.setProperty(Marshaller.JAXB_FRAGMENT, true);
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);

        PrintWriter pw = openFileOrStdoutAsPrintWriter();
        XMLOutputFactory xof = XMLOutputFactory.newFactory();
        xof.setProperty(XMLOutputFactory.IS_REPAIRING_NAMESPACES, Boolean.FALSE);
        XMLEventWriter w = xof.createXMLEventWriter(pw);

        StreamSource src = null;
        if (inputName == null) {
            LOG.info("Reading stdin");
            src = new StreamSource(stdin());
        } else {
            LOG.info("Reading file " + inputName);
            src = new StreamSource(new File(inputName));
        }

        XMLEventReader r = xmlInputFactory.createXMLEventReader(src);

        XMLEventFactory eventFactory = XMLEventFactory.newFactory();

        SimpleBindings bindings = new SimpleBindings();
        while (r.hasNext()) {
            XMLEvent evt = r.peek();
            switch (evt.getEventType()) {
            case XMLEvent.START_ELEMENT: {
                StartElement sE = evt.asStartElement();
                Hit hit = null;
                JAXBElement<Hit> jaxbElement = null;
                if (sE.getName().getLocalPart().equals("Hit")) {
                    jaxbElement = unmarshaller.unmarshal(r, Hit.class);
                    hit = jaxbElement.getValue();
                } else {
                    w.add(r.nextEvent());
                    break;
                }

                if (hit != null) {

                    bindings.put("hit", hit);

                    boolean accept = super.evalJavaScriptBoolean(compiledScript, bindings);

                    if (accept) {
                        marshaller.marshal(jaxbElement, w);
                        w.add(eventFactory.createCharacters("\n"));
                    }
                }

                break;
            }
            case XMLEvent.SPACE:
                break;
            default: {
                w.add(r.nextEvent());
                break;
            }
            }
            r.close();
        }
        w.flush();
        w.close();
        pw.flush();
        pw.close();
        return RETURN_OK;
    } catch (Exception err) {
        return wrapException(err);
    } finally {

    }
}

---

From source file:tools.xor.logic.DefaultStoredProcedure.java

private void outputSP(AggregateView view) throws JAXBException, UnsupportedEncodingException {
    javax.xml.bind.JAXBContext jaxbCtx = javax.xml.bind.JAXBContext.newInstance(AggregateView.class);
    javax.xml.bind.Marshaller marshaller = jaxbCtx.createMarshaller();
    marshaller.setProperty(javax.xml.bind.Marshaller.JAXB_ENCODING, "UTF-8"); //NOI18N
    marshaller.setProperty(javax.xml.bind.Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
    marshaller.marshal(view, System.out);

    ByteArrayOutputStream bOut = new ByteArrayOutputStream();
    marshaller.marshal(view, bOut);//from   w  ww.  j  a  v  a  2 s .c o  m
    bOut.toString("UTF-8");
}

---

From source file:vitro.vgw.communication.idas.IdasProxyImpl.java

private Object sendRequest(Object request) throws VitroGatewayException {

    Object result = null;/*from   w w w. jav  a 2  s.  c  om*/

    InputStream instream = null;

    try {
        HttpPost httpPost = new HttpPost(endPoint);

        JAXBContext jaxbContext = Utils.getJAXBContext();

        Marshaller mar = jaxbContext.createMarshaller();
        mar.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, Boolean.TRUE);
        ByteArrayOutputStream baos = new ByteArrayOutputStream();

        mar.marshal(request, baos);

        String requestXML = baos.toString(HTTP.UTF_8);

        StringEntity entityPar = new StringEntity(requestXML, "application/xml", HTTP.UTF_8);

        httpPost.setEntity(entityPar);

        HttpResponse response = httpclient.execute(httpPost);
        HttpEntity entity = response.getEntity();
        if (entity != null) {

            instream = entity.getContent();

            Unmarshaller unmarshaller = Utils.getJAXBContext().createUnmarshaller();
            Object idasResponse = unmarshaller.unmarshal(instream);

            if (idasResponse instanceof ExceptionReport) {
                throw Utils.parseException((ExceptionReport) idasResponse);
            }

            result = idasResponse;

        } else {
            throw new VitroGatewayException("Server response does not contain any body");
        }
    } catch (VitroGatewayException e) {
        throw e;
    } catch (Exception e) {
        throw new VitroGatewayException(e);
    } finally {
        if (instream != null) {
            try {
                instream.close();
            } catch (IOException e) {
                logger.error("Error while closing server response stream", e);
            }
        }
    }

    return result;

}

---

From source file:com.hp.octane.integrations.uft.items.UftTestDiscoveryResult.java

public void writeToFile(File fileToWriteTo) throws JAXBException {

    JAXBContext jaxbContext = JAXBContext.newInstance(UftTestDiscoveryResult.class);
    Marshaller jaxbMarshaller = jaxbContext.createMarshaller();

    jaxbMarshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
    jaxbMarshaller.marshal(this, fileToWriteTo);
}

---

From source file:com.github.thesmartenergy.cnr.SmartChargingProvider.java

private SOAPMessage createSoapMessage(GetChargingPlans value) throws PEPException {
    try {//from   w  w w.  java  2s.  com
        JAXBContext jaxbContext = JAXBContext.newInstance(GetChargingPlans.class);
        Document document = DocumentBuilderFactory.newInstance().newDocumentBuilder().newDocument();
        jaxbContext.createMarshaller().marshal(value, document);

        SOAPMessage soapMessage = MessageFactory.newInstance().createMessage();
        soapMessage.getSOAPBody().addDocument(document);
        Name headername = soapMessage.getSOAPPart().getEnvelope().createName("Action", "",
                "http://schemas.microsoft.com/ws/2005/05/addressing/none/");
        SOAPHeaderElement soapAction = soapMessage.getSOAPHeader().addHeaderElement(headername);
        soapAction.setMustUnderstand(true);
        soapAction.setTextContent("http://tempuri.org/ISmartCharging/GetChargingPlans");
        return soapMessage;
    } catch (DOMException | JAXBException | ParserConfigurationException | SOAPException ex) {
        throw new PEPException(ex);
    }
}

---

From source file:com.fusesource.example.camel.ingest.FileIngestorRouteBuilderTest.java

protected void createAndMoveFile(AggregateRecordType agt) throws Exception {
    File testFile = new File("./target/test.xml");

    if (testFile.exists()) {
        testFile.delete();/* ww  w.  jav  a 2s. c o m*/
    }

    ObjectFactory objFact = new ObjectFactory();
    JAXBContext context = JAXBContext.newInstance(ObjectFactory.class);
    Marshaller m = context.createMarshaller();
    m.marshal(objFact.createAggregateRecord(agt), testFile);
    // not really atomic, but it works for tests
    FileUtils.moveFile(testFile, new File(pollingFolder, "test.xml"));
}

---

From source file:com.provenance.cloudprovenance.sconverter.PolicyResponseConverter.java

public String marhsallObject(PolicyResponse pResponse) {

    JAXBContext jaxbContext;
    StringWriter sw = new StringWriter();

    try {//from ww  w.  j  a v a 2 s  .  c  o  m
        jaxbContext = JAXBContext.newInstance(instanceDir);
        Marshaller marshaller = jaxbContext.createMarshaller();
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        marshaller.setProperty(Marshaller.JAXB_FRAGMENT, Boolean.TRUE);

        marshaller.setProperty("com.sun.xml.bind.namespacePrefixMapper", cProvPrefixMapper);

        JAXBElement<PolicyResponse> el = pFactory.createPolicyResponse(pResponse);

        marshaller.marshal(el, sw);

        logger.info("Sucessfully marshalled the policy objects: " + el.getName());

    } catch (JAXBException e) {
        e.printStackTrace();
    }

    return sw.toString();
}

---

From source file:com.sharksharding.util.xml.CreateCoreXml.java

public CreateCoreXml() {
    try {/*w w  w  .  ja v  a2 s . c  om*/
        JAXBContext jAXBContext = JAXBContext.newInstance(Beans.class);
        marshaller = jAXBContext.createMarshaller();
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
    } catch (Exception e) {
        e.printStackTrace();
    }
}

---

From source file:gov.nih.nci.cabig.caaers.web.study.ExportStudyController.java

@Override
protected ModelAndView handle(HttpServletRequest request, HttpServletResponse response, Object o,
        BindException e) throws Exception {

    Integer studyID = Integer.valueOf(request.getParameter("id"));
    Study study = studyDao.getById(studyID);
    studyDao.initialize(study);//from  w  w  w .  j  a  v  a2 s  .  co m

    // START study export pre-population
    study.setCoordinatingCenter(new CoordinatingCenter());
    study.getCoordinatingCenter().setStudyCoordinatingCenter(study.getStudyCoordinatingCenter());

    study.setFundingSponsor(new FundingSponsor());
    study.getFundingSponsor().setStudyFundingSponsor(study.getStudyFundingSponsors().get(0));

    for (OrganizationAssignedIdentifier id : study.getOrganizationAssignedIdentifiers()) {
        if (id.getOrganization().equals(study.getFundingSponsor().getStudyFundingSponsor().getOrganization())) {
            study.getFundingSponsor().setOrganizationAssignedIdentifier(id);
            study.getFundingSponsor().getOrganizationAssignedIdentifier().setPrimaryIndicator(true);
            break;
        }
    }
    for (OrganizationAssignedIdentifier id : study.getOrganizationAssignedIdentifiers()) {
        if (id.getOrganization()
                .equals(study.getCoordinatingCenter().getStudyCoordinatingCenter().getOrganization())) {
            study.getCoordinatingCenter().setOrganizationAssignedIdentifier(id);
            study.getCoordinatingCenter().getOrganizationAssignedIdentifier().setPrimaryIndicator(false);
            break;
        }
    }
    // END study export pre-population

    gov.nih.nci.cabig.caaers.integration.schema.study.Studies studies = converter
            .convertStudyDomainToStudyDto(study);

    //Marshall the Data Transfer Object according to Study.xsd schema,
    //and download it to the client machine.
    try {
        String tempDir = System.getProperty("java.io.tmpdir");
        String fileName = "ExportedStudy_" + study.getPrimaryIdentifierValue();
        fileName = RuleUtil.getStringWithoutSpaces(fileName);

        StringWriter sw = new StringWriter();
        JAXBContext jaxbContext = JAXBContext.newInstance("gov.nih.nci.cabig.caaers.integration.schema.study");

        Marshaller marshaller = jaxbContext.createMarshaller();
        marshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
        marshaller.marshal(studies, sw);
        BufferedWriter out = new BufferedWriter(new FileWriter(tempDir + fileName + ".xml"));
        out.write(sw.toString());
        out.flush();
        out.close();

        response.setContentType("application/xml");
        response.setHeader("Content-Disposition", "attachment; filename=" + fileName + ".xml");
        response.setHeader("Content-length", String.valueOf(sw.toString().length()));
        response.setHeader("Pragma", "private");
        response.setHeader("Cache-control", "private, must-revalidate");

        OutputStream outputStream = response.getOutputStream();
        File file = new File(tempDir + fileName + ".xml");
        FileInputStream fileIn = new FileInputStream(file);
        byte[] buffer = new byte[2048];
        int bytesRead = fileIn.read(buffer);
        while (bytesRead >= 0) {
            if (bytesRead > 0)
                outputStream.write(buffer, 0, bytesRead);
            bytesRead = fileIn.read(buffer);
        }
        outputStream.flush();
        outputStream.close();
        fileIn.close();

    } catch (Exception ex) {
        log.error(ex);
        ex.printStackTrace();
    }
    return null;
}

---

From source file:de.intevation.test.irixservice.UploadReportTest.java

@Test(expected = UploadReportException.class)
public void testInvalidDokpool() throws UploadReportException, JAXBException {
    ReportType report = getReportFromFile(VALID_REPORT);
    DokpoolMeta meta = new DokpoolMeta();
    meta.setDokpoolContentType("Invalid doc");
    DOMResult res = new DOMResult();
    Element ele = null;/*from w w  w.j a  v a  2s .c  o  m*/
    JAXBContext jaxbContext = JAXBContext.newInstance(DokpoolMeta.class);
    Marshaller jaxbMarshaller = jaxbContext.createMarshaller();
    jaxbMarshaller.setProperty(Marshaller.JAXB_FORMATTED_OUTPUT, true);
    jaxbMarshaller.setProperty(Marshaller.JAXB_ENCODING, "UTF-8");
    jaxbMarshaller.marshal(meta, res);
    ele = ((Document) res.getNode()).getDocumentElement();

    report.getAnnexes().getAnnotation().get(0).getAny().add(ele);
    testObj.uploadReport(report);
}

---

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