List of usage examples for javax.swing JPopupMenu getFontMetrics
public FontMetrics getFontMetrics(Font font)
FontMetrics for the specified Font. From source file:base.BasePlayer.AddGenome.java
public void actionPerformed(ActionEvent event) { if (event.getSource() == download) { if (!downloading) { downloading = true;//from w w w . j a v a 2 s .com downloadGenome(genometable.getValueAt(genometable.getSelectedRow(), 0).toString()); downloading = false; } } else if (event.getSource() == getLinks) { URL[] urls = AddGenome.genomeHash .get(genometable.getValueAt(genometable.getSelectedRow(), 0).toString()); JPopupMenu menu = new JPopupMenu(); JTextArea area = new JTextArea(); JScrollPane menuscroll = new JScrollPane(); area.setFont(Main.menuFont); menu.add(menuscroll); menu.setPreferredSize(new Dimension( menu.getFontMetrics(Main.menuFont).stringWidth(urls[0].toString()) + Main.defaultFontSize * 10, (int) menu.getFontMetrics(Main.menuFont).getHeight() * 4)); //area.setMaximumSize(new Dimension(300, 600)); area.setLineWrap(true); area.setWrapStyleWord(true); for (int i = 0; i < urls.length; i++) { area.append(urls[i].toString() + "\n"); } area.setCaretPosition(0); area.revalidate(); menuscroll.getViewport().add(area); menu.pack(); menu.show(this, 0, 0); } else if (event.getSource() == checkEnsembl) { if (ensemblfetch) { menu.show(AddGenome.treescroll, 0, 0); } else { EnsemblFetch fetcher = new EnsemblFetch(); fetcher.execute(); } } else if (event.getSource() == checkUpdates) { URL testfile = null; try { // kattoo onko paivityksia annotaatioon String ref = selectedNode.toString(); if (AddGenome.genomeHash.get(ref) != null) { ArrayList<String> testfiles = new ArrayList<String>(); if (Main.drawCanvas != null) { for (int i = 0; i < Main.genomehash.get(ref).size(); i++) { testfiles.add(Main.genomehash.get(ref).get(i).getName().replace(".bed.gz", "")); } } testfile = AddGenome.genomeHash.get(ref)[1]; String result = Main.checkFile(testfile, testfiles); if (result.length() == 0) { Main.showError("You have newest annotation file.", "Note"); } else { int n = JOptionPane.showConfirmDialog(Main.drawCanvas, "New annotation file found: " + result + "\nDownload it now?", "Note", JOptionPane.YES_NO_OPTION); if (n == JOptionPane.YES_OPTION) { URL fileurl = new URL(testfile.getProtocol() + "://" + testfile.getHost() + testfile.getPath().substring(0, testfile.getPath().lastIndexOf("/") + 1) + result); OutputRunner runner = new OutputRunner(fileurl, ref); runner.downloadAnnotation = true; runner.execute(); } } } else { Main.showError("This genome is not from Ensembl list, could not check for updates.", "Note", AddGenome.genometable); } } catch (Exception e) { Main.showError("Cannot connect to " + testfile.getHost() + ".\nTry again later.", "Error"); e.printStackTrace(); } } else if (event.getSource() == remove) { if (!selectedNode.isLeaf()) { String removeref = selectedNode.toString(); // Boolean same = false; try { if (Main.drawCanvas != null) { if (removeref.equals(Main.refDropdown.getSelectedItem().toString())) { Main.referenceFile.close(); // same = true; if (ChromDraw.exonReader != null) { ChromDraw.exonReader.close(); } } } if (Main.genomehash.containsKey(removeref)) { for (int i = Main.genomehash.get(removeref).size() - 1; i >= 0; i--) { Main.genomehash.get(removeref).remove(i); } Main.genomehash.remove(removeref); } if (Main.drawCanvas != null) { Main.refModel.removeElement(removeref); Main.refDropdown.removeItem(removeref); Main.refDropdown.revalidate(); } for (int i = 0; i < Main.genome.getItemCount(); i++) { if (Main.genome.getItem(i).getName() != null) { if (Main.genome.getItem(i).getName().equals(removeref)) { Main.genome.remove(Main.genome.getItem(i)); break; } } } FileUtils.deleteDirectory(new File(Main.genomeDir.getCanonicalPath() + "/" + removeref)); checkGenomes(); Main.setAnnotationDrop(""); if (Main.genomehash.size() == 0) { Main.refDropdown.setSelectedIndex(0); Main.setChromDrop("-1"); } } catch (Exception e) { e.printStackTrace(); try { Main.showError("Could not delete genome folder.\nYou can do it manually by deleting folder " + Main.genomeDir.getCanonicalPath() + "/" + removeref, "Note"); } catch (IOException e1) { e1.printStackTrace(); } } } else { try { if (Main.drawCanvas != null) { if (ChromDraw.exonReader != null) { ChromDraw.exonReader.close(); } } Main.removeAnnotationFile(selectedNode.getParent().toString(), selectedNode.toString()); FileUtils.deleteDirectory(new File(Main.genomeDir.getCanonicalPath() + "/" + selectedNode.getParent().toString() + "/annotation/" + selectedNode.toString())); // root.remove(selectedNode.getParent().getIndex(selectedNode)); // root.remove // checkGenomes(); } catch (Exception e) { e.printStackTrace(); try { Main.showError("Could not delete genome folder.\nYou can do it manually by deleting folder " + Main.genomeDir.getCanonicalPath() + "/" + selectedNode.getParent().toString() + "/annotation/" + selectedNode.toString(), "Note"); } catch (IOException e1) { e1.printStackTrace(); } } treemodel.removeNodeFromParent(selectedNode); } } else if (event.getSource() == add) { if (genomeFile == null) { if (new File(genomeFileText.getText()).exists()) { genomeFile = new File(genomeFileText.getText()); } else { genomeFileText.setText("Select reference genome fasta-file."); genomeFileText.setForeground(Color.red); return; } } /*if(genomeName.getText().contains("Give name") || genomeName.getText().length() == 0) { genomeName.setText("Give name of the genome"); genomeName.setForeground(Color.red); genomeName.revalidate(); } else if(!annotation && new File(Main.userDir +"/genomes/"+genomeName.getText().trim().replace("\\s+", "_")).exists()) { genomeName.setText("This genome exists already."); genomeName.setForeground(Color.red); genomeName.revalidate(); } else */ if ((genomeFileText.getText().length() == 0 || genomeFileText.getText().startsWith("Select reference"))) { genomeFileText.setText("Select reference genome fasta-file."); genomeFileText.setForeground(Color.red); genomeFileText.revalidate(); } else { OutputRunner runner = new OutputRunner( genomeFile.getName().replace(".fasta", "").replace(".gz", ""), genomeFile, annotationFile); runner.execute(); } } else if (event.getSource() == openRef) { try { JFileChooser chooser = new JFileChooser(Main.downloadDir); chooser.setMultiSelectionEnabled(false); chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setAcceptAllFileFilterUsed(false); MyFilterFasta fastaFilter = new MyFilterFasta(); chooser.addChoosableFileFilter(fastaFilter); chooser.setDialogTitle("Select reference fasta-file"); if (Main.screenSize != null) { chooser.setPreferredSize(new Dimension((int) Main.screenSize.getWidth() / 3, (int) Main.screenSize.getHeight() / 3)); } int returnVal = chooser.showOpenDialog((Component) this.getParent()); if (returnVal == JFileChooser.APPROVE_OPTION) { genomeFile = chooser.getSelectedFile(); Main.downloadDir = genomeFile.getParent(); Main.writeToConfig("DownloadDir=" + genomeFile.getParent()); genomeFileText.setText(genomeFile.getName()); genomeFileText.revalidate(); frame.pack(); } } catch (Exception ex) { ex.printStackTrace(); } } else if (event.getSource() == openAnno) { try { JFileChooser chooser = new JFileChooser(Main.downloadDir); chooser.setMultiSelectionEnabled(false); chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setAcceptAllFileFilterUsed(false); MyFilterGFF gffFilter = new MyFilterGFF(); chooser.addChoosableFileFilter(gffFilter); chooser.setDialogTitle("Select annotation gff3-file"); if (Main.screenSize != null) { chooser.setPreferredSize(new Dimension((int) Main.screenSize.getWidth() / 3, (int) Main.screenSize.getHeight() / 3)); } int returnVal = chooser.showOpenDialog((Component) this.getParent()); if (returnVal == JFileChooser.APPROVE_OPTION) { if (genomeFile == null) { genomeFile = Main.fastahash.get(Main.hoverGenome); } annotationFile = chooser.getSelectedFile(); Main.downloadDir = annotationFile.getParent(); Main.writeToConfig("DownloadDir=" + annotationFile.getParent()); OutputRunner runner = new OutputRunner( genomeFile.getName().replace(".fasta", "").replace(".gz", ""), genomeFile, annotationFile); runner.execute(); } } catch (Exception ex) { ex.printStackTrace(); } } }