Example usage for javax.swing JMenu addSeparator

Introduction

In this page you can find the example usage for javax.swing JMenu addSeparator.

Prototype

public void addSeparator() 

Source Link

Document

Appends a new separator to the end of the menu.

Usage

From source file:no.java.ems.client.swing.EmsClient.java

private JMenuBar createMenuBar() {
    JMenuBar menuBar = new JMenuBar();
    JMenu fileMenu = new JMenu();
    fileMenu.setName("menus.file");
    fileMenu.add(new DelegatingAction("new", tabs));
    fileMenu.addSeparator();
    fileMenu.add(new DelegatingAction("open", tabs));
    fileMenu.addSeparator();/*from   w  ww .j  a va 2s .c  o m*/
    fileMenu.add(new DelegatingAction("refresh", tabs));
    fileMenu.addSeparator();
    fileMenu.add(new CloseTabAction());
    fileMenu.addSeparator();
    fileMenu.add(saveAction);
    fileMenu.addSeparator();
    fileMenu.add(logInAction);
    fileMenu.add(logOutAction);
    if (!SystemUtils.IS_OS_MAC) {
        fileMenu.addSeparator();
        fileMenu.add(exitAction);
    }
    menuBar.add(fileMenu);
    JMenu editMenu = new JMenu();
    editMenu.setName("menus.edit");
    editMenu.add(undoAction);
    editMenu.add(redoAction);
    editMenu.addSeparator();
    editMenu.add(new DelegatingAction("cut", tabs));
    editMenu.add(new DelegatingAction("copy", tabs));
    editMenu.add(new DelegatingAction("paste", tabs));
    editMenu.add(new DelegatingAction("delete", tabs));
    editMenu.addSeparator();
    editMenu.add(new DelegatingAction("addTags", tabs));
    editMenu.add(new DelegatingAction("replaceTags", tabs));
    editMenu.add(new DelegatingAction("addKeywords", tabs));
    editMenu.add(new DelegatingAction("replaceKeywords", tabs));
    menuBar.add(editMenu);
    if (SystemUtils.IS_OS_MAC) {
        for (int index = 0; index < menuBar.getMenuCount(); index++) {
            removeIcons(menuBar.getMenu(index));
        }
    }
    return menuBar;
}

---

From source file:nz.ac.massey.cs.gql4jung.browser.ResultBrowser.java

private void initMenubar() {
    menuBar = new JMenuBar();
    this.setJMenuBar(menuBar);

    JMenu menu = new JMenu("File");
    menu.setMnemonic(KeyEvent.VK_F);
    menu.add(actLoadData);//w  ww .  ja  v  a 2 s  .c o m
    menu.add(actLoadQuery);
    if (this.actLoadBuiltInQueries.size() > 0) {
        JMenu menu2 = new JMenu("Built-in queries");
        for (Action act : actLoadBuiltInQueries) {
            menu2.add(act);
        }
        menu.add(menu2);
    }
    menu.addSeparator();
    menu.add(actExport2CSV);
    menu.addSeparator();
    menu.add(actExit);
    menuBar.add(menu);
    menu = new JMenu("Query");
    menu.setMnemonic(KeyEvent.VK_Q);
    menu.add(actRunQuery);
    menu.add(actCancelQuery);
    menuBar.add(menu);
    menu = new JMenu("Explore");
    menu.setMnemonic(KeyEvent.VK_X);
    menu.add(actPreviousMajorInstance);
    menu.add(actNextMajorInstance);
    menu.addSeparator();
    menu.add(actPreviousMinorInstance);
    menu.add(actNextMinorInstance);
    menuBar.add(menu);

}

---

From source file:org.apache.cayenne.modeler.CayenneModelerFrame.java

protected void initMenus() {
    getContentPane().setLayout(new BorderLayout());

    JMenu fileMenu = new JMenu("File");
    JMenu editMenu = new JMenu("Edit");
    JMenu projectMenu = new JMenu("Project");
    JMenu toolMenu = new JMenu("Tools");
    JMenu helpMenu = new JMenu("Help");

    fileMenu.setMnemonic(KeyEvent.VK_F);
    editMenu.setMnemonic(KeyEvent.VK_E);
    projectMenu.setMnemonic(KeyEvent.VK_P);
    toolMenu.setMnemonic(KeyEvent.VK_T);
    helpMenu.setMnemonic(KeyEvent.VK_H);

    fileMenu.add(getAction(NewProjectAction.class).buildMenu());
    fileMenu.add(getAction(OpenProjectAction.class).buildMenu());
    fileMenu.add(getAction(ProjectAction.class).buildMenu());
    fileMenu.add(getAction(ImportDataMapAction.class).buildMenu());
    fileMenu.addSeparator();
    fileMenu.add(getAction(SaveAction.class).buildMenu());
    fileMenu.add(getAction(SaveAsAction.class).buildMenu());
    fileMenu.add(getAction(RevertAction.class).buildMenu());
    fileMenu.addSeparator();//  w w w.  jav  a2s  .  c o  m

    editMenu.add(getAction(UndoAction.class).buildMenu());
    editMenu.add(getAction(RedoAction.class).buildMenu());
    editMenu.add(getAction(CutAction.class).buildMenu());
    editMenu.add(getAction(CopyAction.class).buildMenu());
    editMenu.add(getAction(PasteAction.class).buildMenu());

    recentFileMenu = new RecentFileMenu("Recent Projects");
    addRecentFileListListener(recentFileMenu);
    fileMenu.add(recentFileMenu);

    fileMenu.addSeparator();
    fileMenu.add(getAction(ExitAction.class).buildMenu());

    projectMenu.add(getAction(ValidateAction.class).buildMenu());
    projectMenu.addSeparator();
    projectMenu.add(getAction(CreateNodeAction.class).buildMenu());
    projectMenu.add(getAction(CreateDataMapAction.class).buildMenu());

    projectMenu.add(getAction(CreateObjEntityAction.class).buildMenu());
    projectMenu.add(getAction(CreateEmbeddableAction.class).buildMenu());
    projectMenu.add(getAction(CreateDbEntityAction.class).buildMenu());

    projectMenu.add(getAction(CreateProcedureAction.class).buildMenu());
    projectMenu.add(getAction(CreateQueryAction.class).buildMenu());

    projectMenu.addSeparator();
    projectMenu.add(getAction(ObjEntitySyncAction.class).buildMenu());
    projectMenu.addSeparator();
    projectMenu.add(getAction(RemoveAction.class).buildMenu());

    toolMenu.add(getAction(ReverseEngineeringAction.class).buildMenu());
    toolMenu.add(getAction(InferRelationshipsAction.class).buildMenu());
    toolMenu.add(getAction(ImportEOModelAction.class).buildMenu());
    toolMenu.addSeparator();
    toolMenu.add(getAction(GenerateCodeAction.class).buildMenu());
    toolMenu.add(getAction(GenerateDBAction.class).buildMenu());
    toolMenu.add(getAction(MigrateAction.class).buildMenu());

    /**
     * Menu for opening Log console
     */
    toolMenu.addSeparator();

    logMenu = getAction(ShowLogConsoleAction.class).buildCheckBoxMenu();

    if (!LogConsole.getInstance().getConsoleProperty(LogConsole.DOCKED_PROPERTY)
            && LogConsole.getInstance().getConsoleProperty(LogConsole.SHOW_CONSOLE_PROPERTY)) {
        LogConsole.getInstance().setConsoleProperty(LogConsole.SHOW_CONSOLE_PROPERTY, false);
    }

    updateLogConsoleMenu();
    toolMenu.add(logMenu);

    toolMenu.addSeparator();
    toolMenu.add(getAction(ConfigurePreferencesAction.class).buildMenu());

    helpMenu.add(getAction(AboutAction.class).buildMenu());
    helpMenu.add(getAction(DocumentationAction.class).buildMenu());

    JMenuBar menuBar = new JMenuBar();

    menuBar.add(fileMenu);
    menuBar.add(editMenu);
    menuBar.add(projectMenu);
    menuBar.add(toolMenu);
    menuBar.add(helpMenu);

    setJMenuBar(menuBar);
}

---

From source file:org.apache.pdfbox.debugger.PDFDebugger.java

private JMenu createFileMenu() {
    JMenuItem openMenuItem = new JMenuItem("Open...");
    openMenuItem.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_O, SHORCUT_KEY_MASK));
    openMenuItem.addActionListener(new ActionListener() {
        @Override/*from  w w  w  .  j  av  a2s .  co m*/
        public void actionPerformed(ActionEvent evt) {
            openMenuItemActionPerformed(evt);
        }
    });

    JMenu fileMenu = new JMenu("File");
    fileMenu.add(openMenuItem);
    fileMenu.setMnemonic('F');

    JMenuItem openUrlMenuItem = new JMenuItem("Open URL...");
    openUrlMenuItem.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_U, SHORCUT_KEY_MASK));
    openUrlMenuItem.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            String urlString = JOptionPane.showInputDialog("Enter an URL");
            if (urlString == null || urlString.isEmpty()) {
                return;
            }
            try {
                readPDFurl(urlString, "");
            } catch (IOException e) {
                throw new RuntimeException(e);
            }
        }
    });
    fileMenu.add(openUrlMenuItem);

    reopenMenuItem = new JMenuItem("Reopen");
    reopenMenuItem.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_R, SHORCUT_KEY_MASK));
    reopenMenuItem.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            try {
                if (currentFilePath.startsWith("http")) {
                    readPDFurl(currentFilePath, "");
                } else {
                    readPDFFile(currentFilePath, "");
                }
            } catch (IOException e) {
                new ErrorDialog(e).setVisible(true);
            }
        }
    });
    reopenMenuItem.setEnabled(false);
    fileMenu.add(reopenMenuItem);

    try {
        recentFiles = new RecentFiles(this.getClass(), 5);
    } catch (Exception e) {
        throw new RuntimeException(e);
    }

    recentFilesMenu = new JMenu("Open Recent");
    recentFilesMenu.setEnabled(false);
    addRecentFileItems();
    fileMenu.add(recentFilesMenu);

    printMenuItem = new JMenuItem("Print");
    printMenuItem.setAccelerator(KeyStroke.getKeyStroke(KeyEvent.VK_P, SHORCUT_KEY_MASK));
    printMenuItem.setEnabled(false);
    printMenuItem.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            printMenuItemActionPerformed(evt);
        }
    });

    if (!IS_MAC_OS) {
        fileMenu.addSeparator();
        fileMenu.add(printMenuItem);
    }

    JMenuItem exitMenuItem = new JMenuItem("Exit");
    exitMenuItem.setAccelerator(KeyStroke.getKeyStroke("alt F4"));
    exitMenuItem.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent evt) {
            exitMenuItemActionPerformed(evt);
        }
    });

    if (!IS_MAC_OS) {
        fileMenu.addSeparator();
        fileMenu.add(exitMenuItem);
    }

    return fileMenu;
}

---

From source file:org.apache.pdfbox.debugger.PDFDebugger.java

private JMenu createEditMenu() {
    JMenu editMenu = new JMenu("Edit");
    editMenu.setMnemonic('E');

    JMenuItem cutMenuItem = new JMenuItem("Cut");
    cutMenuItem.setEnabled(false);/*  ww w.j  a v  a  2 s  . c  o m*/
    editMenu.add(cutMenuItem);

    JMenuItem copyMenuItem = new JMenuItem("Copy");
    copyMenuItem.setEnabled(false);
    editMenu.add(copyMenuItem);

    JMenuItem pasteMenuItem = new JMenuItem("Paste");
    pasteMenuItem.setEnabled(false);
    editMenu.add(pasteMenuItem);

    JMenuItem deleteMenuItem = new JMenuItem("Delete");
    deleteMenuItem.setEnabled(false);
    editMenu.add(deleteMenuItem);
    editMenu.addSeparator();
    editMenu.add(createFindMenu());

    return editMenu;
}

---

From source file:org.apache.pdfbox.debugger.PDFDebugger.java

private JMenu createViewMenu() {
    JMenu viewMenu = new JMenu("View");
    viewMenu.setMnemonic('V');
    if (isPageMode) {
        viewModeItem = new JMenuItem("Show Internal Structure");
    } else {/*from www .  j  ava  2  s. c  om*/
        viewModeItem = new JMenuItem("Show Pages");
    }
    viewModeItem.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            if (isPageMode) {
                viewModeItem.setText("Show Pages");
                isPageMode = false;
            } else {
                viewModeItem.setText("Show Internal Structure");
                isPageMode = true;
            }
            if (document != null) {
                initTree();
            }
        }
    });
    viewMenu.add(viewModeItem);

    ZoomMenu zoomMenu = ZoomMenu.getInstance();
    zoomMenu.setEnableMenu(false);
    viewMenu.add(zoomMenu.getMenu());

    RotationMenu rotationMenu = RotationMenu.getInstance();
    rotationMenu.setEnableMenu(false);
    viewMenu.add(rotationMenu.getMenu());

    viewMenu.addSeparator();

    showTextStripper = new JCheckBoxMenuItem("Show TextStripper TextPositions");
    showTextStripper.setEnabled(false);
    viewMenu.add(showTextStripper);

    showTextStripperBeads = new JCheckBoxMenuItem("Show TextStripper Beads");
    showTextStripperBeads.setEnabled(false);
    viewMenu.add(showTextStripperBeads);

    showFontBBox = new JCheckBoxMenuItem("Show Approximate Text Bounds");
    showFontBBox.setEnabled(false);
    viewMenu.add(showFontBBox);

    showGlyphBounds = new JCheckBoxMenuItem("Show Glyph Bounds");
    showGlyphBounds.setEnabled(false);
    viewMenu.add(showGlyphBounds);

    return viewMenu;
}

---

From source file:org.apache.tika.gui.TikaGUI.java

private void addMenuBar() {
    JMenuBar bar = new JMenuBar();

    JMenu file = new JMenu("File");
    file.setMnemonic(KeyEvent.VK_F);
    addMenuItem(file, "Open...", "openfile", KeyEvent.VK_O);
    addMenuItem(file, "Open URL...", "openurl", KeyEvent.VK_U);
    file.addSeparator();
    addMenuItem(file, "Exit", "exit", KeyEvent.VK_X);
    bar.add(file);//from w  ww  .ja v  a2 s  .c  o m

    JMenu view = new JMenu("View");
    view.setMnemonic(KeyEvent.VK_V);
    addMenuItem(view, "Metadata", "metadata", KeyEvent.VK_M);
    addMenuItem(view, "Formatted text", "html", KeyEvent.VK_F);
    addMenuItem(view, "Plain text", "text", KeyEvent.VK_P);
    addMenuItem(view, "Main content", "main", KeyEvent.VK_C);
    addMenuItem(view, "Structured text", "xhtml", KeyEvent.VK_S);
    addMenuItem(view, "Recursive JSON", "json", KeyEvent.VK_J);
    bar.add(view);

    bar.add(Box.createHorizontalGlue());
    JMenu help = new JMenu("Help");
    help.setMnemonic(KeyEvent.VK_H);
    addMenuItem(help, "About Tika", "about", KeyEvent.VK_A);
    bar.add(help);

    setJMenuBar(bar);
}

---

From source file:org.ayound.js.debug.ui.DebugMainFrame.java

protected JMenuBar createMenuBar() {
    final JMenuBar menuBar = new JMenuBar();

    JMenu fileMenu = new JMenu(Messages.getString("DebugMainFrame.File")); //$NON-NLS-1$
    fileMenu.setMnemonic('f');
    JMenuItem item = null;/*from   w w w.ja v a2s  . c  o  m*/

    item = fileMenu.add(actionOpen);
    fileMenu.add(item);

    item = fileMenu.add(actionClose);
    fileMenu.add(item);

    fileMenu.addSeparator();

    item = fileMenu.add(actionExit);
    item.setMnemonic('x');
    menuBar.add(fileMenu);

    JMenu debugMenu = new JMenu(Messages.getString("DebugMainFrame.Debug")); //$NON-NLS-1$
    debugMenu.setMnemonic('d');

    item = debugMenu.add(actionDebugStart);
    debugMenu.add(item);

    menuBar.add(debugMenu);

    item = debugMenu.add(actionDebugEnd);
    debugMenu.add(item);

    JMenu helpMenu = new JMenu(Messages.getString("DebugMainFrame.Help")); //$NON-NLS-1$
    helpMenu.setMnemonic('d');

    item = helpMenu.add(actionHelp);
    helpMenu.add(item);

    item = helpMenu.add(actionAbout);
    helpMenu.add(item);

    JMenu languageMenu = new JMenu("lauguage");

    item = languageMenu.add(actionLanguageChinese);
    languageMenu.add(item);

    item = languageMenu.add(actionLanguageEnglish);
    languageMenu.add(item);

    menuBar.add(languageMenu);

    menuBar.add(helpMenu);

    return menuBar;
}

---

From source file:org.broad.igv.hic.MainWindow.java

private void addPredefinedLoadItems(JMenu fileMenu) {
    //---- loadGM ----
    JMenuItem loadGM = new JMenuItem("GM cell line (human)");
    loadGM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 100);
                colorRangeSlider.setMaximum(100);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setMajorTickSpacing(10);
                hic.reset();//from ww w.ja v  a2  s. co m
                load("http://www.broadinstitute.org/igvdata/hic/hg18/GM.summary.binned.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    });
    fileMenu.add(loadGM);

    //---- load562 ----
    JMenuItem load562 = new JMenuItem("K562 cell line (human)");
    load562.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 100);
                colorRangeSlider.setMaximum(100);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setMajorTickSpacing(10);
                hic.reset();
                load("http://www.broadinstitute.org/igvdata/hic/hg18/K562.summary.binned.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    });
    fileMenu.add(load562);
    fileMenu.addSeparator();

    //---- loadFeb ----
    JMenuItem loadFeb = new JMenuItem("HiSeq Hi-C Human (02/01/2012)");
    loadFeb.addActionListener(new

    ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 20);
                colorRangeSlider.setMaximum(2000);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setMajorTickSpacing(100);
                colorRangeSlider.setUpperValue(1500);
                hic.reset();
                load("http://iwww.broadinstitute.org/igvdata/hic/HiSeq/120201.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    }

    );
    fileMenu.add(loadFeb);

    //---- loadFeb ----
    JMenuItem loadApr = new JMenuItem("HiSeq Hi-C Human (04/01/2012)");
    loadApr.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 20);
                colorRangeSlider.setMaximum(3000);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setMajorTickSpacing(500);
                colorRangeSlider.setUpperValue(2500);
                hic.reset();
                load("http://iwww.broadinstitute.org/igvdata/hic/files/April_2012/120401.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    }

    );
    fileMenu.add(loadApr);

    fileMenu.addSeparator();

    //---- loadHindIII ----
    JMenuItem loadHindIII = new JMenuItem("MiSeq Hi-C Human (08/01/2011)");
    loadHindIII.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 20);
                colorRangeSlider.setMaximum(50);
                colorRangeSlider.setMajorTickSpacing(10);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setUpperValue(20);
                hic.reset();
                load("http://iwww.broadinstitute.org/igvdata/hic/MiSeq/Hi-C_HindIII_Human_August.hic");

            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    }

    );
    fileMenu.add(loadHindIII);

    //---- loadMar2 ----
    JMenuItem loadMar2 = new JMenuItem("MiSeq Hi-C Human (05/18/2012)");
    loadMar2.addActionListener(new

    ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 1);
                colorRangeSlider.setMaximum(50);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setUpperValue(20);
                colorRangeSlider.setMajorTickSpacing(10);
                hic.reset();
                load("https://iwww.broadinstitute.org/igvdata/hic/MiSeq/Elena_Human_120518.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    }

    );
    fileMenu.add(loadMar2);

    //---- loadCoolAid ----
    JMenuItem loadCoolAid = new JMenuItem("MiSeq COOL-AID Mouse (12/11/2011)");
    loadCoolAid.addActionListener(new

    ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 1);
                colorRangeSlider.setMaximum(5);
                colorRangeSlider.setMinimum(0);
                colorRangeSlider.setUpperValue(1);
                colorRangeSlider.setMajorTickSpacing(1);
                hic.reset();
                load("https://iwww.broadinstitute.org/igvdata/hic/MiSeq/COOL-AID_Elena_Mouse_December11.hic");
            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }

        }
    }

    );
    fileMenu.add(loadCoolAid);
    fileMenu.addSeparator();

    //---- loadDmelDataset ----
    JMenuItem loadDmelDataset = new JMenuItem("Fly");
    loadDmelDataset.addActionListener(new

    ActionListener() {
        public void actionPerformed(ActionEvent e) {
            try {
                heatmapPanel.setObservedRange(0, 20000);
                colorRangeSlider.setMaximum(20000);
                colorRangeSlider.setMinimum(0);
                hic.reset();
                load("http://iwww.broadinstitute.org/igvdata/hic/dmel/selected_formatted.hic");

            } catch (IOException e1) {
                JOptionPane.showMessageDialog(MainWindow.this, "Error loading data: " + e1.getMessage());
            }
        }
    }

    );
    fileMenu.add(loadDmelDataset);
    fileMenu.addSeparator();
}

---

From source file:org.broad.igv.hic.MainWindow.java

private JMenuBar createMenuBar(final JPanel hiCPanel) {

    JMenuBar menuBar = new JMenuBar();

    //======== fileMenu ========
    JMenu fileMenu = new JMenu("File");

    //---- loadMenuItem ----
    JMenuItem loadMenuItem = new JMenuItem();
    loadMenuItem.setText("Load...");
    loadMenuItem.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            loadMenuItemActionPerformed(e);
        }//from  w  w w  . j a v  a  2s .com
    });
    fileMenu.add(loadMenuItem);

    //---- loadFromURL ----
    JMenuItem loadFromURL = new JMenuItem();
    JMenuItem getEigenvector = new JMenuItem();
    final JCheckBoxMenuItem viewDNAseI;

    loadFromURL.setText("Load from URL ...");
    loadFromURL.setName("loadFromURL");
    loadFromURL.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            loadFromURLActionPerformed(e);
        }
    });
    fileMenu.add(loadFromURL);
    fileMenu.addSeparator();

    // Pre-defined datasets.  TODO -- generate from a file
    addPredefinedLoadItems(fileMenu);

    JMenuItem saveToImage = new JMenuItem();
    saveToImage.setText("Save to image");
    saveToImage.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            BufferedImage image = (BufferedImage) createImage(1000, 1000);
            Graphics g = image.createGraphics();
            hiCPanel.paint(g);

            JFileChooser fc = new JFileChooser();
            fc.setSelectedFile(new File("image.png"));
            int actionDialog = fc.showSaveDialog(null);
            if (actionDialog == JFileChooser.APPROVE_OPTION) {
                File file = fc.getSelectedFile();
                if (file.exists()) {
                    actionDialog = JOptionPane.showConfirmDialog(null, "Replace existing file?");
                    if (actionDialog == JOptionPane.NO_OPTION || actionDialog == JOptionPane.CANCEL_OPTION)
                        return;
                }
                try {
                    // default if they give no format or invalid format
                    String fmt = "jpg";
                    int ind = file.getName().indexOf(".");
                    if (ind != -1) {
                        String ext = file.getName().substring(ind + 1);
                        String[] strs = ImageIO.getWriterFormatNames();
                        for (String aStr : strs)
                            if (ext.equals(aStr))
                                fmt = ext;
                    }
                    ImageIO.write(image.getSubimage(0, 0, 600, 600), fmt, file);
                } catch (IOException ie) {
                    System.err.println("Unable to write " + file + ": " + ie);
                }
            }
        }
    });
    fileMenu.add(saveToImage);
    getEigenvector = new JMenuItem("Get principal eigenvector");
    getEigenvector.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            getEigenvectorActionPerformed(e);
        }
    });
    fileMenu.add(getEigenvector);
    //---- exit ----
    JMenuItem exit = new JMenuItem();
    exit.setText("Exit");
    exit.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            exitActionPerformed(e);
        }
    });
    fileMenu.add(exit);

    menuBar.add(fileMenu);

    //======== Tracks menu ========

    JMenu tracksMenu = new JMenu("Tracks");

    viewEigenvector = new JCheckBoxMenuItem("View Eigenvector...");
    viewEigenvector.addItemListener(new ItemListener() {
        public void itemStateChanged(ItemEvent e) {
            if (viewEigenvector.isSelected()) {
                if (eigenvectorTrack == null) {
                    eigenvectorTrack = new EigenvectorTrack("eigen", "Eigenvectors");
                }
                updateEigenvectorTrack();
            } else {
                trackPanel.setEigenvectorTrack(null);
                if (HiCTrackManager.getLoadedTracks().isEmpty()) {
                    trackPanel.setVisible(false);
                }
            }
        }
    });
    viewEigenvector.setEnabled(false);
    tracksMenu.add(viewEigenvector);

    JMenuItem loadItem = new JMenuItem("Load...");
    loadItem.addActionListener(new AbstractAction() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            HiCTrackManager.loadHostedTrack(MainWindow.this);
        }

    });
    tracksMenu.add(loadItem);

    JMenuItem loadFromFileItem = new JMenuItem("Load from file...");
    loadFromFileItem.addActionListener(new AbstractAction() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            HiCTrackManager.loadTrackFromFile(MainWindow.this);
        }

    });
    tracksMenu.add(loadFromFileItem);

    menuBar.add(tracksMenu);

    //======== Extras menu ========
    JMenu extrasMenu = new JMenu("Extras");

    JMenuItem dumpPearsons = new JMenuItem("Dump pearsons matrix ...");
    dumpPearsons.addActionListener(new AbstractAction() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            BasicMatrix pearsons = hic.zd.getPearsons();
            try {
                String chr1 = hic.getChromosomes()[hic.zd.getChr1()].getName();
                String chr2 = hic.getChromosomes()[hic.zd.getChr2()].getName();
                int binSize = hic.zd.getBinSize();
                File initFile = new File("pearsons_" + chr1 + "_" + "_" + chr2 + "_" + binSize + ".bin");
                File f = FileDialogUtils.chooseFile("Save pearsons", null, initFile, FileDialogUtils.SAVE);
                if (f != null) {
                    ScratchPad.dumpPearsonsBinary(pearsons, chr1, chr2, hic.zd.getBinSize(), f);
                }
            } catch (IOException e) {
                e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
            }
        }

    });

    JMenuItem dumpEigenvector = new JMenuItem("Dump eigenvector ...");
    dumpEigenvector.addActionListener(new AbstractAction() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            try {
                ScratchPad.dumpEigenvector(hic);
            } catch (IOException e) {
                e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
            }
        }

    });
    extrasMenu.add(dumpEigenvector);

    JMenuItem readPearsons = new JMenuItem("Read pearsons...");
    readPearsons.addActionListener(new AbstractAction() {
        @Override
        public void actionPerformed(ActionEvent actionEvent) {
            try {
                File f = FileDialogUtils.chooseFile("Pearsons file (Yunfan format)");
                if (f != null) {
                    BasicMatrix bm = ScratchPad.readPearsons(f.getAbsolutePath());

                    hic.zd.setPearsons(bm);
                }
            } catch (IOException e) {
                e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
            }
        }

    });
    extrasMenu.add(readPearsons);

    extrasMenu.add(dumpPearsons);
    menuBar.add(extrasMenu);

    return menuBar;
}

---

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