Example usage for javax.swing JFrame setTitle

List of usage examples for javax.swing JFrame setTitle

Introduction

In this page you can find the example usage for javax.swing JFrame setTitle.

Prototype

public void setTitle(String title) 

Source Link

Document

Sets the title for this frame to the specified string.

Usage

From source file:org.moeaframework.analysis.plot.Plot.java

/**
 * Displays the chart in a standalone window.
 * //from w w w.j  a  va2  s  .  c om
 * @param width the width of the chart
 * @param height the height of the chart
 * @return the window that was created
 */
public JFrame show(int width, int height) {
    JFrame frame = new JFrame();

    frame.getContentPane().setLayout(new BorderLayout());
    frame.getContentPane().add(getChartPanel(), BorderLayout.CENTER);

    frame.setPreferredSize(new Dimension(width, height));
    frame.pack();

    frame.setLocationRelativeTo(null);
    frame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
    frame.setTitle("MOEA Framework Plot");
    frame.setVisible(true);

    return frame;
}

From source file:de.bfs.radon.omsimulation.gui.OMPanelData.java

/**
 * Initialises the interface of the data panel.
 *//*www .  ja  va2s .  c  o m*/
protected void initialize() {
    setLayout(null);

    lblExportChartTo = new JLabel("Export chart to ...");
    lblExportChartTo.setBounds(436, 479, 144, 14);
    lblExportChartTo.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblExportChartTo.setVisible(false);
    add(lblExportChartTo);

    btnCsv = new JButton("CSV");
    btnCsv.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.csv", "csv"));
            fileDialog.showSaveDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String csv;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("csv")) {
                    csv = "";
                } else {
                    csv = ".csv";
                }
                String csvPath = file.getAbsolutePath() + csv;
                OMRoom selectedRoom = (OMRoom) comboBoxRooms.getSelectedItem();
                double[] selectedValues = selectedRoom.getValues();
                File csvFile = new File(csvPath);
                try {
                    FileWriter logWriter = new FileWriter(csvFile);
                    BufferedWriter csvOutput = new BufferedWriter(logWriter);
                    csvOutput.write("\"ID\";\"" + selectedRoom.getId() + "\"");
                    csvOutput.newLine();
                    for (int i = 0; i < selectedValues.length; i++) {
                        csvOutput.write("\"" + i + "\";\"" + (int) selectedValues[i] + "\"");
                        csvOutput.newLine();
                    }
                    JOptionPane.showMessageDialog(null, "CSV saved successfully!\n" + csvPath, "Success",
                            JOptionPane.INFORMATION_MESSAGE);
                    csvOutput.close();
                } catch (IOException ioe) {
                    JOptionPane.showMessageDialog(null,
                            "Failed to write CSV. Please check permissions!\n" + ioe.getMessage(), "Failed",
                            JOptionPane.ERROR_MESSAGE);
                    ioe.printStackTrace();
                }
            } else {
                JOptionPane.showMessageDialog(null, "Failed to write CSV. Please check the file path!",
                        "Failed", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    btnCsv.setBounds(590, 475, 70, 23);
    btnCsv.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnCsv.setVisible(false);
    add(btnCsv);

    btnPdf = new JButton("PDF");
    btnPdf.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.pdf", "pdf"));
            fileDialog.showSaveDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String pdf;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("pdf")) {
                    pdf = "";
                } else {
                    pdf = ".pdf";
                }
                String pdfPath = file.getAbsolutePath() + pdf;
                OMBuilding building = (OMBuilding) comboBoxProjects.getSelectedItem();
                String title = building.getName();
                OMRoom selectedRoom = (OMRoom) comboBoxRooms.getSelectedItem();
                JFreeChart chart = OMCharts.createRoomChart(title, selectedRoom, false);
                int height = (int) PageSize.A4.getWidth();
                int width = (int) PageSize.A4.getHeight();
                try {
                    OMExports.exportPdf(pdfPath, chart, width, height, new DefaultFontMapper(), title);
                    JOptionPane.showMessageDialog(null, "PDF saved successfully!\n" + pdfPath, "Success",
                            JOptionPane.INFORMATION_MESSAGE);
                } catch (IOException ioe) {
                    JOptionPane.showMessageDialog(null,
                            "Failed to write PDF. Please check permissions!\n" + ioe.getMessage(), "Failed",
                            JOptionPane.ERROR_MESSAGE);
                    ioe.printStackTrace();
                }
            } else {
                JOptionPane.showMessageDialog(null, "Failed to write PDF. Please check the file path!",
                        "Failed", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    btnPdf.setBounds(670, 475, 70, 23);
    btnPdf.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnPdf.setVisible(false);
    add(btnPdf);

    lblSelectProject = new JLabel("Select Project");
    lblSelectProject.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblSelectProject.setBounds(10, 65, 132, 14);
    add(lblSelectProject);

    lblSelectRoom = new JLabel("Select Room");
    lblSelectRoom.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblSelectRoom.setBounds(10, 94, 132, 14);
    add(lblSelectRoom);

    panelData = new JPanel();
    panelData.setBounds(10, 118, 730, 347);
    add(panelData);

    btnRefresh = new JButton("Load");
    btnRefresh.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnRefresh.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            if (txtOmbFile.getText() != null && !txtOmbFile.getText().equals("")
                    && !txtOmbFile.getText().equals(" ")) {
                txtOmbFile.setBackground(Color.WHITE);
                String ombPath = txtOmbFile.getText();
                String omb;
                String[] tmpFileName = ombPath.split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("omb")) {
                    omb = "";
                } else {
                    omb = ".omb";
                }
                txtOmbFile.setText(ombPath + omb);
                setOmbFile(ombPath + omb);
                File ombFile = new File(ombPath + omb);
                if (ombFile.exists()) {
                    txtOmbFile.setBackground(Color.WHITE);
                    btnRefresh.setEnabled(false);
                    comboBoxProjects.setEnabled(false);
                    setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR));
                    btnPdf.setVisible(false);
                    btnCsv.setVisible(false);
                    lblExportChartTo.setVisible(false);
                    progressBar.setVisible(true);
                    progressBar.setStringPainted(true);
                    progressBar.setIndeterminate(true);
                    refreshProjectsTask = new RefreshProjects();
                    refreshProjectsTask.execute();
                } else {
                    txtOmbFile.setBackground(new Color(255, 222, 222, 128));
                    JOptionPane.showMessageDialog(null, "OMB-file not found, please check the file path!",
                            "Error", JOptionPane.ERROR_MESSAGE);
                }
            } else {
                txtOmbFile.setBackground(new Color(255, 222, 222, 128));
                JOptionPane.showMessageDialog(null, "Please select an OMB-file!", "Warning",
                        JOptionPane.WARNING_MESSAGE);
            }
        }
    });
    btnRefresh.setBounds(616, 61, 124, 23);
    add(btnRefresh);

    btnMaximize = new JButton("Fullscreen");
    btnMaximize.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnMaximize.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            if (comboBoxRooms.isEnabled()) {
                if (comboBoxRooms.getSelectedItem() != null) {
                    OMBuilding building = (OMBuilding) comboBoxProjects.getSelectedItem();
                    String title = building.getName();
                    OMRoom room = (OMRoom) comboBoxRooms.getSelectedItem();
                    panelRoom = createRoomPanel(title, room, false, false);
                    JFrame chartFrame = new JFrame();
                    JPanel chartPanel = createRoomPanel(title, room, false, true);
                    chartFrame.getContentPane().add(chartPanel);
                    chartFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
                    Dimension dim = Toolkit.getDefaultToolkit().getScreenSize();
                    chartFrame.setBounds(0, 0, (int) dim.getWidth(), (int) dim.getHeight());
                    chartFrame.setTitle("OM Simulation Tool: " + title + ", Room " + room.getId());
                    chartFrame.setResizable(true);
                    chartFrame.setExtendedState(JFrame.MAXIMIZED_BOTH);
                    chartFrame.setVisible(true);
                }
            }
        }
    });
    btnMaximize.setBounds(10, 475, 124, 23);
    btnMaximize.setVisible(false);
    add(btnMaximize);

    comboBoxProjects = new JComboBox<OMBuilding>();
    comboBoxProjects.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    comboBoxProjects.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            boolean b = false;
            Color c = null;
            if (comboBoxProjects.isEnabled()) {
                if (comboBoxProjects.getSelectedItem() != null) {
                    b = true;
                    c = Color.WHITE;
                    OMBuilding building = (OMBuilding) comboBoxProjects.getSelectedItem();
                    comboBoxRooms.removeAllItems();
                    for (int i = 0; i < building.getRooms().length; i++) {
                        comboBoxRooms.addItem(building.getRooms()[i]);
                    }
                    for (int i = 0; i < building.getCellars().length; i++) {
                        comboBoxRooms.addItem(building.getCellars()[i]);
                    }
                    for (int i = 0; i < building.getMiscs().length; i++) {
                        comboBoxRooms.addItem(building.getMiscs()[i]);
                    }
                } else {
                    b = false;
                    c = null;
                }
            } else {
                b = false;
                c = null;
            }
            lblSelectRoom.setEnabled(b);
            panelData.setEnabled(b);
            btnMaximize.setVisible(b);
            comboBoxRooms.setEnabled(b);
            panelData.setBackground(c);
        }
    });
    comboBoxProjects.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            boolean b = false;
            Color c = null;
            if (comboBoxProjects.isEnabled()) {
                if (comboBoxProjects.getSelectedItem() != null) {
                    b = true;
                    c = Color.WHITE;
                    OMBuilding building = (OMBuilding) comboBoxProjects.getSelectedItem();
                    comboBoxRooms.removeAllItems();
                    for (int i = 0; i < building.getRooms().length; i++) {
                        comboBoxRooms.addItem(building.getRooms()[i]);
                    }
                    for (int i = 0; i < building.getCellars().length; i++) {
                        comboBoxRooms.addItem(building.getCellars()[i]);
                    }
                    for (int i = 0; i < building.getMiscs().length; i++) {
                        comboBoxRooms.addItem(building.getMiscs()[i]);
                    }
                } else {
                    b = false;
                    c = null;
                }
            } else {
                b = false;
                c = null;
            }
            lblSelectRoom.setEnabled(b);
            panelData.setEnabled(b);
            btnMaximize.setVisible(b);
            comboBoxRooms.setEnabled(b);
            panelData.setBackground(c);
        }
    });
    comboBoxProjects.setBounds(152, 61, 454, 22);
    add(comboBoxProjects);

    comboBoxRooms = new JComboBox<OMRoom>();
    comboBoxRooms.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    comboBoxRooms.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            if (comboBoxRooms.isEnabled()) {
                if (comboBoxRooms.getSelectedItem() != null) {
                    setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR));
                    remove(panelData);
                    comboBoxRooms.setEnabled(false);
                    refreshChartsTask = new RefreshCharts();
                    refreshChartsTask.execute();
                }
            }
        }
    });
    comboBoxRooms.setBounds(152, 90, 454, 22);
    add(comboBoxRooms);

    progressBar = new JProgressBar();
    progressBar.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    progressBar.setBounds(10, 475, 730, 23);
    progressBar.setVisible(false);
    add(progressBar);

    lblSelectRoom.setEnabled(false);
    panelData.setEnabled(false);
    comboBoxRooms.setEnabled(false);

    lblHelp = new JLabel(
            "Select an OMB-Object file to analyse its data. You can inspect radon concentration for each room.");
    lblHelp.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblHelp.setForeground(Color.GRAY);
    lblHelp.setBounds(10, 10, 730, 14);
    add(lblHelp);

    txtOmbFile = new JTextField();
    txtOmbFile.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    txtOmbFile.addFocusListener(new FocusAdapter() {
        @Override
        public void focusLost(FocusEvent arg0) {
            setOmbFile(txtOmbFile.getText());
        }
    });
    txtOmbFile.setBounds(152, 33, 454, 20);
    add(txtOmbFile);
    txtOmbFile.setColumns(10);

    btnBrowse = new JButton("Browse");
    btnBrowse.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnBrowse.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.omb", "omb"));
            fileDialog.showOpenDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String omb;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("omb")) {
                    omb = "";
                } else {
                    omb = ".omb";
                }
                txtOmbFile.setText(file.getAbsolutePath() + omb);
                setOmbFile(file.getAbsolutePath() + omb);
            }
        }
    });
    btnBrowse.setBounds(616, 32, 124, 23);
    add(btnBrowse);

    lblSelectOmbfile = new JLabel("Select OMB-File");
    lblSelectOmbfile.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblSelectOmbfile.setBounds(10, 36, 132, 14);
    add(lblSelectOmbfile);
}

From source file:gui_pack.MainGui.java

private void runTestsButtonActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_runTestsButtonActionPerformed
    int rangeMin, rangeMax, spacing;
    int passing = 0;

    {//  Beginning of input validation
        String errorTitle, errorMessage;

        //make sure at least one sort algorithm is selected
        if (!(insertionCheckBox.isSelected() || mergeCheckBox.isSelected() || quickCheckBox.isSelected()
                || selectionCheckBox.isSelected())) {
            errorTitle = "Selection Error";
            errorMessage = "At least one sort algorithm (Insertion Sort, "
                    + "Merge Sort, Quick Sort, or Selection Sort) must be selected.";
            JOptionPane.showMessageDialog(null, errorMessage, errorTitle, JOptionPane.WARNING_MESSAGE);
            return;
        }/*from w  w  w .ja  v a2 s  .  c  om*/

        //make sure at least one order is selected
        if (!(ascendingCheckBox.isSelected() || descendingCheckBox.isSelected()
                || randomCheckBox.isSelected())) {
            errorTitle = "Selection Error";
            errorMessage = "At least one order (Ascending Order, Descending Order, or Random Order) "
                    + "must be selected.";
            JOptionPane.showMessageDialog(null, errorMessage, errorTitle, JOptionPane.WARNING_MESSAGE);
            return;
        }

        //make sure all the proper fields contain data
        try {
            rangeMin = Integer.parseInt(rangeMinField.getText());
            rangeMax = Integer.parseInt(rangeMaxField.getText());
            spacing = Integer.parseInt(spacingField.getText());
            //for the multithreaded version of this program "iterations" cannot be a variable
            //this was left in to catch if the iteration field is left blank or has no value
            if (iterationField.isEnabled()) {
                Integer.parseInt(iterationField.getText());
            }
        } catch (NumberFormatException arbitraryName) {
            errorTitle = "Input Error";
            if (iterationField.isEnabled()) {
                errorMessage = "The size, intervals, and iterations fields must contain "
                        + "integer values and only integer values.";
            } else {
                errorMessage = "The size and intervals fields must contain "
                        + "integer values and only integer values.";
            }
            JOptionPane.showMessageDialog(null, errorMessage, errorTitle, JOptionPane.WARNING_MESSAGE);
            return;
        }

        //make sure field data is appropriate
        if (rangeMin > rangeMax) {
            errorTitle = "Range Error";
            errorMessage = "Minimum Size must be less than or equal to Maximum Size.";
            JOptionPane.showMessageDialog(null, errorMessage, errorTitle, JOptionPane.WARNING_MESSAGE);
            return;
        }

        if (spacing < 1 || rangeMin < 1 || rangeMax < 1
                || (iterationField.isEnabled() && Integer.parseInt(iterationField.getText()) < 1)) {
            errorTitle = "Value Error";
            if (iterationField.isEnabled()) {
                errorMessage = "Intervals, sizes, and iterations must be in the positive domain. "
                        + "Spacing, Range(min), Range(max), and Iterations must be greater than or"
                        + " equal to one.";
            } else {
                errorMessage = "Intervals and sizes must be in the positive domain. "
                        + "Spacing, Range(min) and Range(max) be greater than or" + " equal to one.";
            }
            JOptionPane.showMessageDialog(null, errorMessage, errorTitle, JOptionPane.WARNING_MESSAGE);
            return;
        }

        if (!iterationField.isEnabled()) {
            passing = 0;
        }

    } // End of input validation

    //here's where we set up a loading bar in case the tests take a while
    JProgressBar loadBar = new JProgressBar();
    JFrame loadFrame = new JFrame();
    JLabel displayLabel1 = new JLabel();
    loadBar.setIndeterminate(true);
    loadBar.setVisible(true);
    displayLabel1.setText("Running large tests, or many tests, using inefficient algorithms \n"
            + "may take a while. Please be patient.");
    loadFrame.setLayout(new FlowLayout());
    loadFrame.add(loadBar);
    loadFrame.add(displayLabel1);
    loadFrame.setSize(600, 100);
    loadFrame.setTitle("Loading");
    loadFrame.setVisible(true);

    //now we will leave this open until the tests are completed
    //now we can conduct the actual tests
    SwingWorker worker = new SwingWorker<XYSeriesCollection, Void>() {
        XYSeriesCollection results = new XYSeriesCollection();

        @Override
        protected XYSeriesCollection doInBackground() {
            XYSeries insertSeries = new XYSeries("Insertion Sort");
            XYSeries mergeSeries = new XYSeries("Merge Sort");
            XYSeries quickSeries = new XYSeries("Quick Sort");
            XYSeries selectSeries = new XYSeries("Selection Sort");

            final boolean ascending = ascendingCheckBox.isSelected();
            final boolean descending = descendingCheckBox.isSelected();
            final boolean insertion = insertionCheckBox.isSelected();
            final boolean merge = mergeCheckBox.isSelected();
            final boolean quick = quickCheckBox.isSelected();
            final boolean selection = selectionCheckBox.isSelected();

            final int iterations = Integer.parseInt(iterationField.getText());

            ListGenerator generator = new ListGenerator();
            int[] list;
            for (int count = rangeMin; count <= rangeMax; count = count + spacing) {

                if (ascending) {

                    list = generator.ascending(count);
                    if (insertion) {
                        insertSeries.add(count, insertionSort.sort(list));
                    }
                    if (merge) {
                        mergeSeries.add(count, mergeSort.sort(list));
                    }
                    if (quick) {
                        quickSeries.add(count, quickSort.sort(list));
                    }
                    if (selection) {
                        selectSeries.add(count, selectionSort.sort(list));
                    }
                }
                if (descending) {

                    list = generator.descending(count);
                    if (insertion) {
                        insertSeries.add(count, insertionSort.sort(list));
                    }
                    if (merge) {
                        mergeSeries.add(count, mergeSort.sort(list));
                    }
                    if (quick) {
                        quickSeries.add(count, quickSort.sort(list));
                    }
                    if (selection) {
                        selectSeries.add(count, selectionSort.sort(list));
                    }
                }

                for (int iteration = 0; iteration < iterations; iteration++) {
                    list = generator.random(count);

                    if (insertion) {
                        insertSeries.add(count, insertionSort.sort(list));
                    }
                    if (merge) {
                        mergeSeries.add(count, mergeSort.sort(list));
                    }
                    if (quick) {
                        quickSeries.add(count, quickSort.sort(list));
                    }
                    if (selection) {
                        selectSeries.add(count, selectionSort.sort(list));
                    }
                }

            }

            //now we aggregate the results
            if (insertion) {
                results.addSeries(insertSeries);
            }
            if (merge) {
                results.addSeries(mergeSeries);
            }
            if (quick) {
                results.addSeries(quickSeries);
            }
            if (selection) {
                results.addSeries(selectSeries);
            }
            return results;
        }

        @Override
        protected void done() {
            //finally, we display the results
            JFreeChart chart = ChartFactory.createScatterPlot("SortExplorer", // chart title
                    "List Size", // x axis label
                    "Number of Comparisons", // y axis label
                    results, // data  
                    PlotOrientation.VERTICAL, true, // include legend
                    true, // tooltips
                    false // urls
            );
            ChartFrame frame = new ChartFrame("First", chart);
            frame.pack();
            frame.setVisible(true);
            loadFrame.setVisible(false);
        }
    };

    //having set up the multithreading 'worker' we can finally conduct the 
    //test
    worker.execute();

}

From source file:de.bfs.radon.omsimulation.gui.OMPanelTesting.java

/**
 * Initialises the interface of the results panel.
 *//*from  w  ww . j  a v a  2 s . co m*/
protected void initialize() {

    setLayout(null);
    isSimulated = false;

    lblExportChartTo = new JLabel("Export chart to ...");
    lblExportChartTo.setBounds(436, 479, 144, 14);
    lblExportChartTo.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    lblExportChartTo.setVisible(false);
    add(lblExportChartTo);

    btnCsv = new JButton("CSV");
    btnCsv.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.csv", "csv"));
            fileDialog.showSaveDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String csv;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("csv")) {
                    csv = "";
                } else {
                    csv = ".csv";
                }
                String csvPath = file.getAbsolutePath() + csv;
                double[] selectedValues;
                OMRoom[] rooms = new OMRoom[7];
                rooms[0] = (OMRoom) comboBoxRoom1.getSelectedItem();
                rooms[1] = (OMRoom) comboBoxRoom2.getSelectedItem();
                rooms[2] = (OMRoom) comboBoxRoom3.getSelectedItem();
                rooms[3] = (OMRoom) comboBoxRoom4.getSelectedItem();
                rooms[4] = (OMRoom) comboBoxRoom5.getSelectedItem();
                rooms[5] = (OMRoom) comboBoxRoom6.getSelectedItem();
                rooms[6] = (OMRoom) comboBoxRoom7.getSelectedItem();
                int start = sliderStartTime.getValue();
                final int day = 24;
                File csvFile = new File(csvPath);
                try {
                    OMCampaign campaign;
                    if (isResult) {
                        campaign = getResultCampaign();
                    } else {
                        campaign = new OMCampaign(start, rooms, 0);
                    }
                    FileWriter logWriter = new FileWriter(csvFile);
                    BufferedWriter csvOutput = new BufferedWriter(logWriter);
                    csvOutput.write("\"ID\";\"Room\";\"Radon\"");
                    csvOutput.newLine();
                    selectedValues = campaign.getValueChain();
                    int x = 0;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[0].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[1].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[2].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[3].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[4].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[5].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    start = start + day;
                    for (int i = start; i < start + day; i++) {
                        csvOutput.write("\"" + i + "\";\"" + rooms[6].getId() + "\";\""
                                + (int) selectedValues[x] + "\"");
                        csvOutput.newLine();
                        x++;
                    }
                    JOptionPane.showMessageDialog(null, "CSV saved successfully!\n" + csvPath, "Success",
                            JOptionPane.INFORMATION_MESSAGE);
                    csvOutput.close();
                } catch (IOException ioe) {
                    JOptionPane.showMessageDialog(null,
                            "Failed to write CSV. Please check permissions!\n" + ioe.getMessage(), "Failed",
                            JOptionPane.ERROR_MESSAGE);
                    ioe.printStackTrace();
                }
            } else {
                JOptionPane.showMessageDialog(null, "Failed to write CSV. Please check the file path!",
                        "Failed", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    btnCsv.setBounds(590, 475, 70, 23);
    btnCsv.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnCsv.setVisible(false);
    add(btnCsv);

    btnPdf = new JButton("PDF");
    btnPdf.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent e) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.pdf", "pdf"));
            fileDialog.showSaveDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String pdf;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("pdf")) {
                    pdf = "";
                } else {
                    pdf = ".pdf";
                }
                String pdfPath = file.getAbsolutePath() + pdf;
                OMRoom[] rooms = new OMRoom[7];
                rooms[0] = (OMRoom) comboBoxRoom1.getSelectedItem();
                rooms[1] = (OMRoom) comboBoxRoom2.getSelectedItem();
                rooms[2] = (OMRoom) comboBoxRoom3.getSelectedItem();
                rooms[3] = (OMRoom) comboBoxRoom4.getSelectedItem();
                rooms[4] = (OMRoom) comboBoxRoom5.getSelectedItem();
                rooms[5] = (OMRoom) comboBoxRoom6.getSelectedItem();
                rooms[6] = (OMRoom) comboBoxRoom7.getSelectedItem();
                int start = sliderStartTime.getValue();
                OMCampaign campaign;
                try {
                    if (isResult) {
                        campaign = getResultCampaign();
                    } else {
                        campaign = new OMCampaign(start, rooms, 0);
                    }
                    JFreeChart chart = OMCharts.createCampaignChart(campaign, false);
                    String title = "Campaign: " + rooms[0].getId() + rooms[1].getId() + rooms[2].getId()
                            + rooms[3].getId() + rooms[4].getId() + rooms[5].getId() + rooms[6].getId()
                            + ", Start: " + start;
                    int height = (int) PageSize.A4.getWidth();
                    int width = (int) PageSize.A4.getHeight();
                    try {
                        OMExports.exportPdf(pdfPath, chart, width, height, new DefaultFontMapper(), title);
                        JOptionPane.showMessageDialog(null, "PDF saved successfully!\n" + pdfPath, "Success",
                                JOptionPane.INFORMATION_MESSAGE);
                    } catch (IOException ioe) {
                        JOptionPane.showMessageDialog(null,
                                "Failed to write PDF. Please check permissions!\n" + ioe.getMessage(), "Failed",
                                JOptionPane.ERROR_MESSAGE);
                        ioe.printStackTrace();
                    }
                } catch (IOException ioe) {
                    JOptionPane.showMessageDialog(null, "Failed to create chart!\n" + ioe.getMessage(),
                            "Failed", JOptionPane.ERROR_MESSAGE);
                    ioe.printStackTrace();
                }
            } else {
                JOptionPane.showMessageDialog(null, "Failed to write PDF. Please check the file path!",
                        "Failed", JOptionPane.ERROR_MESSAGE);
            }
        }
    });
    btnPdf.setBounds(670, 475, 70, 23);
    btnPdf.setFont(new Font(Font.SANS_SERIF, Font.PLAIN, 11));
    btnPdf.setVisible(false);
    add(btnPdf);

    lblSelectProject = new JLabel("Select Project");
    lblSelectProject.setBounds(10, 65, 132, 14);
    lblSelectProject.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(lblSelectProject);

    lblSelectRooms = new JLabel("Select Rooms");
    lblSelectRooms.setBounds(10, 94, 132, 14);
    lblSelectRooms.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(lblSelectRooms);

    lblStartTime = new JLabel("Start Time");
    lblStartTime.setBounds(10, 123, 132, 14);
    lblStartTime.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(lblStartTime);

    lblWarning = new JLabel("Select 6 rooms and 1 cellar!");
    lblWarning.setForeground(Color.RED);
    lblWarning.setBounds(565, 123, 175, 14);
    lblWarning.setFont(new Font("SansSerif", Font.PLAIN, 11));
    lblWarning.setVisible(false);
    add(lblWarning);

    sliderStartTime = new JSlider();
    sliderStartTime.setMaximum(0);
    sliderStartTime.setBounds(152, 119, 285, 24);
    sliderStartTime.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(sliderStartTime);

    spnrStartTime = new JSpinner();
    spnrStartTime.setModel(new SpinnerNumberModel(0, 0, 0, 1));
    spnrStartTime.setBounds(447, 120, 108, 22);
    spnrStartTime.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(spnrStartTime);

    btnRefresh = new JButton("Load");
    btnRefresh.setBounds(616, 61, 124, 23);
    btnRefresh.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(btnRefresh);

    btnMaximize = new JButton("Fullscreen");
    btnMaximize.setBounds(10, 475, 124, 23);
    btnMaximize.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(btnMaximize);

    panelCampaign = new JPanel();
    panelCampaign.setBounds(10, 150, 730, 315);
    panelCampaign.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(panelCampaign);

    progressBar = new JProgressBar();
    progressBar.setBounds(10, 475, 730, 23);
    progressBar.setFont(new Font("SansSerif", Font.PLAIN, 11));
    progressBar.setVisible(false);
    add(progressBar);

    lblOpenOmbfile = new JLabel("Open OMB-File");
    lblOpenOmbfile.setFont(new Font("SansSerif", Font.PLAIN, 11));
    lblOpenOmbfile.setBounds(10, 36, 132, 14);
    add(lblOpenOmbfile);

    lblHelp = new JLabel("Select an OMB-Object file to manually simulate virtual campaigns.");
    lblHelp.setForeground(Color.GRAY);
    lblHelp.setFont(new Font("SansSerif", Font.PLAIN, 11));
    lblHelp.setBounds(10, 10, 730, 14);
    add(lblHelp);

    txtOmbFile = new JTextField();
    txtOmbFile.setFont(new Font("SansSerif", Font.PLAIN, 11));
    txtOmbFile.setColumns(10);
    txtOmbFile.setBounds(152, 33, 454, 20);
    add(txtOmbFile);

    btnBrowse = new JButton("Browse");
    btnBrowse.setFont(new Font("SansSerif", Font.PLAIN, 11));
    btnBrowse.setBounds(616, 32, 124, 23);
    add(btnBrowse);

    comboBoxRoom1 = new JComboBox<OMRoom>();
    comboBoxRoom1.setBounds(152, 90, 75, 22);
    comboBoxRoom1.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom1);

    comboBoxRoom2 = new JComboBox<OMRoom>();
    comboBoxRoom2.setBounds(237, 90, 75, 22);
    comboBoxRoom2.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom2);

    comboBoxRoom3 = new JComboBox<OMRoom>();
    comboBoxRoom3.setBounds(323, 90, 75, 22);
    comboBoxRoom3.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom3);

    comboBoxRoom4 = new JComboBox<OMRoom>();
    comboBoxRoom4.setBounds(408, 90, 75, 22);
    comboBoxRoom4.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom4);

    comboBoxRoom5 = new JComboBox<OMRoom>();
    comboBoxRoom5.setBounds(494, 90, 75, 22);
    comboBoxRoom5.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom5);

    comboBoxRoom6 = new JComboBox<OMRoom>();
    comboBoxRoom6.setBounds(579, 90, 75, 22);
    comboBoxRoom6.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom6);

    comboBoxRoom7 = new JComboBox<OMRoom>();
    comboBoxRoom7.setBounds(665, 90, 75, 22);
    comboBoxRoom7.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxRoom7);

    comboBoxProjects = new JComboBox<OMBuilding>();
    comboBoxProjects.setBounds(152, 61, 454, 22);
    comboBoxProjects.setFont(new Font("SansSerif", Font.PLAIN, 11));
    add(comboBoxProjects);

    comboBoxRoom1.addActionListener(this);
    comboBoxRoom1.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom2.addActionListener(this);
    comboBoxRoom2.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom3.addActionListener(this);
    comboBoxRoom3.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom4.addActionListener(this);
    comboBoxRoom4.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom5.addActionListener(this);
    comboBoxRoom5.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom6.addActionListener(this);
    comboBoxRoom6.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });
    comboBoxRoom7.addActionListener(this);
    comboBoxRoom7.addPropertyChangeListener(new PropertyChangeListener() {
        public void propertyChange(PropertyChangeEvent evt) {
            validateCampaign();
        }
    });

    sliderStartTime.addChangeListener(new ChangeListener() {
        public void stateChanged(ChangeEvent e) {
            if (comboBoxProjects.isEnabled() || isResult) {
                if (comboBoxProjects.getSelectedItem() != null) {
                    spnrStartTime.setValue((int) sliderStartTime.getValue());
                    updateChart();
                }
            }
        }
    });
    spnrStartTime.addChangeListener(new ChangeListener() {
        public void stateChanged(ChangeEvent arg0) {
            if (comboBoxProjects.isEnabled() || isResult) {
                if (comboBoxProjects.getSelectedItem() != null) {
                    sliderStartTime.setValue((Integer) spnrStartTime.getValue());
                    updateChart();
                }
            }
        }
    });
    btnRefresh.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            if (txtOmbFile.getText() != null && !txtOmbFile.getText().equals("")
                    && !txtOmbFile.getText().equals(" ")) {
                txtOmbFile.setBackground(Color.WHITE);
                String ombPath = txtOmbFile.getText();
                String omb;
                String[] tmpFileName = ombPath.split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("omb")) {
                    omb = "";
                } else {
                    omb = ".omb";
                }
                txtOmbFile.setText(ombPath + omb);
                setOmbFile(ombPath + omb);
                File ombFile = new File(ombPath + omb);
                if (ombFile.exists()) {
                    txtOmbFile.setBackground(Color.WHITE);
                    btnRefresh.setEnabled(false);
                    comboBoxProjects.setEnabled(false);
                    setCursor(Cursor.getPredefinedCursor(Cursor.WAIT_CURSOR));
                    progressBar.setVisible(true);
                    btnPdf.setVisible(false);
                    btnCsv.setVisible(false);
                    btnMaximize.setVisible(false);
                    lblExportChartTo.setVisible(false);
                    progressBar.setIndeterminate(true);
                    progressBar.setStringPainted(true);
                    refreshTask = new Refresh();
                    refreshTask.execute();
                } else {
                    txtOmbFile.setBackground(new Color(255, 222, 222, 128));
                    JOptionPane.showMessageDialog(null, "OMB-file not found, please check the file path!",
                            "Error", JOptionPane.ERROR_MESSAGE);
                }
            } else {
                txtOmbFile.setBackground(new Color(255, 222, 222, 128));
                JOptionPane.showMessageDialog(null, "Please select an OMB-file!", "Warning",
                        JOptionPane.WARNING_MESSAGE);
            }
        }
    });
    btnMaximize.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            try {
                OMRoom[] rooms = new OMRoom[7];
                rooms[0] = (OMRoom) comboBoxRoom1.getSelectedItem();
                rooms[1] = (OMRoom) comboBoxRoom2.getSelectedItem();
                rooms[2] = (OMRoom) comboBoxRoom3.getSelectedItem();
                rooms[3] = (OMRoom) comboBoxRoom4.getSelectedItem();
                rooms[4] = (OMRoom) comboBoxRoom5.getSelectedItem();
                rooms[5] = (OMRoom) comboBoxRoom6.getSelectedItem();
                rooms[6] = (OMRoom) comboBoxRoom7.getSelectedItem();
                int start = sliderStartTime.getValue();
                String title = "Campaign: " + rooms[0].getId() + rooms[1].getId() + rooms[2].getId()
                        + rooms[3].getId() + rooms[4].getId() + rooms[5].getId() + rooms[6].getId()
                        + ", Start: " + start;
                OMCampaign campaign;
                if (isResult) {
                    campaign = getResultCampaign();
                } else {
                    campaign = new OMCampaign(start, rooms, 0);
                }
                JPanel campaignChart = createCampaignPanel(campaign, false, true);
                JFrame chartFrame = new JFrame();
                chartFrame.getContentPane().add(campaignChart);
                chartFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
                Dimension dim = Toolkit.getDefaultToolkit().getScreenSize();
                chartFrame.setBounds(0, 0, (int) dim.getWidth(), (int) dim.getHeight());
                chartFrame.setTitle(title);
                chartFrame.setResizable(true);
                chartFrame.setExtendedState(JFrame.MAXIMIZED_BOTH);
                chartFrame.setVisible(true);
            } catch (IOException ioe) {
                ioe.printStackTrace();
            }
        }
    });
    txtOmbFile.addFocusListener(new FocusAdapter() {
        @Override
        public void focusLost(FocusEvent arg0) {
            setOmbFile(txtOmbFile.getText());
        }
    });
    btnBrowse.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            JFileChooser fileDialog = new JFileChooser();
            fileDialog.setFileFilter(new FileNameExtensionFilter("*.omb", "omb"));
            fileDialog.showOpenDialog(getParent());
            final File file = fileDialog.getSelectedFile();
            if (file != null) {
                String omb;
                String[] tmpFileName = file.getAbsolutePath().split("\\.");
                if (tmpFileName[tmpFileName.length - 1].equals("omb")) {
                    omb = "";
                } else {
                    omb = ".omb";
                }
                txtOmbFile.setText(file.getAbsolutePath() + omb);
                setOmbFile(file.getAbsolutePath() + omb);
            }
        }
    });
}

From source file:ffx.ui.MainPanel.java

/**
 * <p>/*from   w w  w. j  a  v  a  2s.  com*/
 * help</p>
 */
public void help() {
    String helpHS = "ffx/help/jhelpset.hs";
    ClassLoader cl = getClass().getClassLoader();
    HelpSet hs = null;
    try {
        URL hsURL = HelpSet.findHelpSet(cl, helpHS);
        hs = new HelpSet(null, hsURL);
    } catch (Exception e) {
        logger.warning("HelpSet not found: " + e);
        return;
    }
    JHelp jhelp = new JHelp(hs);
    JFrame helpFrame = new JFrame();
    JFrame.setDefaultLookAndFeelDecorated(true);
    helpFrame.add(jhelp);
    helpFrame.setTitle("Force Field X Help");
    helpFrame.setSize(jhelp.getPreferredSize());
    helpFrame.setVisible(true);
    jhelp.setCurrentID("ForceFieldXBook");
    helpFrame.toFront();
}

From source file:edu.ku.brc.ui.UIHelper.java

/**
 * Changes the Window indicator to shoe that it is modified
 * @param comp the Dialog/Frame/*from   w w w .j  a va2s.c o m*/
 * @param isModified whether it is modified
 */
public static void setWindowModified(final Component comp, final boolean isModified) {
    if (comp != null) {
        if (comp instanceof JDialog) {
            //JDialog dlg = (JDialog)comp;
            //if (isMacOS_10_5_X)
            //{
            //    only works on JFrame
            //    dlg.getRootPane().putClientProperty("JComponent.windowModified", isModified ? Boolean.TRUE : Boolean.FALSE);
            //} else
            //{
            // dlg.setTitle(dlg.getTitle() + "*");
            //}

        } else if (comp instanceof JFrame) {
            JFrame dlg = (JFrame) comp;
            if (isMacOS_10_5_X) {
                dlg.getRootPane().putClientProperty("JComponent.windowModified",
                        isModified ? Boolean.TRUE : Boolean.FALSE);

            } else {
                String title;
                if (isModified) {
                    title = dlg.getTitle() + "*";
                } else {
                    title = dlg.getTitle();
                    if (title.endsWith("*")) {
                        title = StringUtils.chomp(title);
                    }
                }
                dlg.setTitle(title);
            }
        }
    }
}

From source file:edu.ku.brc.specify.Specify.java

/**
 * Bring up the PPApp demo by showing the frame (only applicable if coming up
 * as an application, not an applet);/*  w w w.j  a va2 s . c  o m*/
 */
public void showApp() {
    JFrame f = getFrame();
    f.setTitle(getTitle());
    f.getContentPane().add(this, BorderLayout.CENTER);
    f.pack();

    f.addWindowListener(new WindowAdapter() {
        @Override
        public void windowClosing(WindowEvent e) {
            doExit(true);
        }
    });

    UIHelper.centerWindow(f);
    Rectangle r = f.getBounds();
    int x = AppPreferences.getLocalPrefs().getInt("APP.X", r.x);
    int y = AppPreferences.getLocalPrefs().getInt("APP.Y", r.y);
    int w = AppPreferences.getLocalPrefs().getInt("APP.W", r.width);
    int h = AppPreferences.getLocalPrefs().getInt("APP.H", r.height);
    boolean isMacAndMaxed = UIHelper.isMacOS()
            && AppPreferences.getLocalPrefs().getBoolean("APP.MAXIMIZED", true);
    if (isMacAndMaxed) {
        f.setExtendedState(Frame.MAXIMIZED_BOTH);
    } else {
        UIHelper.positionAndFitToScreen(f, x, y, w, h);
    }
    f.setVisible(true);
}

From source file:citation_prediction.CitationCore.java

/**
 * This function will take a list of WSB solutions and graph them. You can add solutions to the graph by saving
 *       the return of the function the first time and passing it back in on the next call as the 'plot'.
 * //from  w  w  w.  j a va  2 s.  c o  m
 * 
 * @param data_in_days The citation data distributed mostly even in days (call fixdata function if data is in years).
 * @param m The average number of new references in each new paper for a journal.
 * @param plot The plot you would like the WSB solution plotted to.
 * @param graphTitle The title to display on the JPanel.
 * @param lineLegend The title of this curve.
 * @param wsbSolutions The list of WSB solutions to graph.
 * @param showGraph Display the graph to the user (generally called once all curves have been added.)
 * @param frame The frame to display the graph in.
 * @return A Panel containing the graph.
 */
public Plot2DPanel graphWSB(double[][] data_in_days, double m, Plot2DPanel plot, String graphTitle,
        String lineLegend, ArrayList<LinkedHashMap<String, Double>> wsbSolutions, boolean showGraph,
        JFrame frame) {

    //source of library: http://code.google.com/p/jmathplot/

    int plotLength = data_in_days.length + (365 * 3);
    double[][] data_in_years = new double[plotLength][2];

    //Translate the data into years instead of days
    for (int i = 0; i < data_in_days.length; i++) {
        data_in_years[i][0] = data_in_days[i][0] / 365;
        data_in_years[i][1] = data_in_days[i][1];
    }

    for (int i = data_in_days.length; i < plotLength; i++) {
        data_in_years[i][0] = data_in_years[i - 1][0] + .025;
        data_in_years[i][1] = data_in_years[data_in_days.length - 1][1];
    }

    if (plot == null) {
        plot = new Plot2DPanel();

        plot.addScatterPlot("Actual Citations", data_in_years); //Plot the data
    }

    //Extract the timevalue column
    RealMatrix mdata = MatrixUtils.createRealMatrix(data_in_years);
    double[] tvalues = mdata.getColumn(0);
    double[] cvalues = new double[plotLength];

    for (LinkedHashMap<String, Double> s : wsbSolutions) {
        //calculate their fitted y values
        for (int i = 0; i < plotLength; i++) {
            cvalues[i] = m * (Math.exp(
                    s.get("lambda") * pnorm((Math.log(365 * tvalues[i]) - s.get("mu")) / s.get("sigma"))) - 1);
        }
        //Calculate the Ultimate Impact
        double c_impact = m * (Math.exp(s.get("lambda")) - 1);
        //plot the fit
        plot.addLinePlot("Ultimate Impact=" + c_impact + " :: " + lineLegend, tvalues, cvalues);
    }

    // put the PlotPanel in a JFrame, as a JPanel
    if (showGraph) {
        plot.setAxisLabel(0, "Time in Years");
        plot.setAxisLabel(1, "Cumulative Citations");

        //Uncomment these if you wish to have fixed axis.
        //plot.setFixedBounds(1, 0, 500);
        //plot.setFixedBounds(0, 0, 60);

        // Add the file Title
        BaseLabel filetitle = new BaseLabel(graphTitle, Color.GRAY, 0.5, 1.1);
        filetitle.setFont(new Font("Courier", Font.BOLD, 13));
        plot.addPlotable(filetitle);

        plot.addLegend("SOUTH");
        //JFrame frame = new JFrame(graphTitle); 
        frame.setTitle(graphTitle);
        frame.setContentPane(plot);
        frame.setBounds(0, 0, 1000, 800);
        frame.setVisible(true);
        frame.repaint();
    }
    return plot;
}

From source file:au.org.ala.delta.intkey.Intkey.java

/**
 * Creates and shows the GUI. Called by the swing application framework
 *///from  www. jav  a2  s  .  c  o m
@Override
protected void startup() {
    final JFrame mainFrame = getMainFrame();
    _defaultGlassPane = mainFrame.getGlassPane();
    mainFrame.setTitle("Intkey");
    mainFrame.setExtendedState(JFrame.MAXIMIZED_BOTH);
    mainFrame.setIconImages(IconHelper.getRedIconList());

    _helpController = new HelpController(HELPSET_PATH);

    _taxonformatter = new ItemFormatter(false, CommentStrippingMode.STRIP_ALL, AngleBracketHandlingMode.REMOVE,
            true, false, true);
    _context = new IntkeyContext(new IntkeyUIInterceptor(this), new DirectivePopulatorInterceptor(this));

    _advancedModeOnlyDynamicButtons = new ArrayList<JButton>();
    _normalModeOnlyDynamicButtons = new ArrayList<JButton>();
    _activeOnlyWhenCharactersUsedButtons = new ArrayList<JButton>();
    _dynamicButtonsFullHelp = new HashMap<JButton, String>();

    ActionMap actionMap = getContext().getActionMap();

    _rootPanel = new JPanel();
    _rootPanel.setAlignmentX(Component.LEFT_ALIGNMENT);
    _rootPanel.setBackground(SystemColor.control);
    _rootPanel.setLayout(new BorderLayout(0, 0));

    _globalOptionBar = new JPanel();
    _globalOptionBar.setBorder(new EmptyBorder(0, 5, 0, 5));
    _rootPanel.add(_globalOptionBar, BorderLayout.NORTH);
    _globalOptionBar.setLayout(new BorderLayout(0, 0));

    _pnlDynamicButtons = new JPanel();
    FlowLayout flowLayout_1 = (FlowLayout) _pnlDynamicButtons.getLayout();
    flowLayout_1.setVgap(0);
    flowLayout_1.setHgap(0);
    _globalOptionBar.add(_pnlDynamicButtons, BorderLayout.WEST);

    _btnContextHelp = new JButton();
    _btnContextHelp.setMinimumSize(new Dimension(30, 30));
    _btnContextHelp.setMaximumSize(new Dimension(30, 30));
    _btnContextHelp.setAction(actionMap.get("btnContextHelp"));
    _btnContextHelp.setPreferredSize(new Dimension(30, 30));
    _btnContextHelp.setMargin(new Insets(2, 5, 2, 5));
    _btnContextHelp.addActionListener(actionMap.get("btnContextHelp"));
    _globalOptionBar.add(_btnContextHelp, BorderLayout.EAST);

    _rootSplitPane = new JSplitPane();
    _rootSplitPane.setDividerSize(3);
    _rootSplitPane.setResizeWeight(0.5);
    _rootSplitPane.setOrientation(JSplitPane.HORIZONTAL_SPLIT);
    _rootSplitPane.setContinuousLayout(true);
    _rootPanel.add(_rootSplitPane);

    _innerSplitPaneLeft = new JSplitPane();
    _innerSplitPaneLeft.setMinimumSize(new Dimension(25, 25));
    _innerSplitPaneLeft.setAlignmentX(Component.CENTER_ALIGNMENT);
    _innerSplitPaneLeft.setDividerSize(3);
    _innerSplitPaneLeft.setResizeWeight(0.5);

    _innerSplitPaneLeft.setContinuousLayout(true);
    _innerSplitPaneLeft.setOrientation(JSplitPane.VERTICAL_SPLIT);
    _rootSplitPane.setLeftComponent(_innerSplitPaneLeft);

    _pnlAvailableCharacters = new JPanel();
    _innerSplitPaneLeft.setLeftComponent(_pnlAvailableCharacters);
    _pnlAvailableCharacters.setLayout(new BorderLayout(0, 0));

    _sclPaneAvailableCharacters = new JScrollPane();
    _pnlAvailableCharacters.add(_sclPaneAvailableCharacters, BorderLayout.CENTER);

    _listAvailableCharacters = new JList();
    // _listAvailableCharacters.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    _listAvailableCharacters.setSelectionMode(ListSelectionModel.MULTIPLE_INTERVAL_SELECTION);
    _listAvailableCharacters.setCellRenderer(_availableCharactersListCellRenderer);
    _listAvailableCharacters.addMouseListener(new MouseInputAdapter() {

        @Override
        public void mouseClicked(MouseEvent e) {
            if (e.getClickCount() >= 2) {
                int selectedIndex = _listAvailableCharacters.getSelectedIndex();
                if (selectedIndex >= 0) {
                    try {
                        Character ch = (Character) _availableCharacterListModel.getElementAt(selectedIndex);
                        executeDirective(new UseDirective(), Integer.toString(ch.getCharacterId()));
                    } catch (Exception ex) {
                        ex.printStackTrace();
                    }
                }
            }
        }
    });

    _sclPaneAvailableCharacters.setViewportView(_listAvailableCharacters);

    _pnlAvailableCharactersHeader = new JPanel();
    _pnlAvailableCharacters.add(_pnlAvailableCharactersHeader, BorderLayout.NORTH);
    _pnlAvailableCharactersHeader.setLayout(new BorderLayout(0, 0));

    _lblNumAvailableCharacters = new JLabel();
    _lblNumAvailableCharacters.setBorder(new EmptyBorder(0, 5, 0, 0));
    _lblNumAvailableCharacters.setFont(new Font("Tahoma", Font.PLAIN, 15));
    _lblNumAvailableCharacters.setText(MessageFormat.format(availableCharactersCaption, 0));
    _pnlAvailableCharactersHeader.add(_lblNumAvailableCharacters, BorderLayout.WEST);

    _pnlAvailableCharactersButtons = new JPanel();
    FlowLayout flowLayout = (FlowLayout) _pnlAvailableCharactersButtons.getLayout();
    flowLayout.setVgap(2);
    flowLayout.setHgap(2);
    _pnlAvailableCharactersHeader.add(_pnlAvailableCharactersButtons, BorderLayout.EAST);

    // All toolbar buttons should be disabled until a dataset is loaded.
    _btnRestart = new JButton();
    _btnRestart.setAction(actionMap.get("btnRestart"));
    _btnRestart.setPreferredSize(new Dimension(30, 30));
    _btnRestart.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnRestart);

    _btnBestOrder = new JButton();
    _btnBestOrder.setAction(actionMap.get("btnBestOrder"));
    _btnBestOrder.setPreferredSize(new Dimension(30, 30));
    _btnBestOrder.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnBestOrder);

    _btnSeparate = new JButton();
    _btnSeparate.setAction(actionMap.get("btnSeparate"));
    _btnSeparate.setVisible(_advancedMode);
    _btnSeparate.setPreferredSize(new Dimension(30, 30));
    _btnSeparate.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnSeparate);

    _btnNaturalOrder = new JButton();
    _btnNaturalOrder.setAction(actionMap.get("btnNaturalOrder"));
    _btnNaturalOrder.setPreferredSize(new Dimension(30, 30));
    _btnNaturalOrder.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnNaturalOrder);

    _btnDiffSpecimenTaxa = new JButton();
    _btnDiffSpecimenTaxa.setAction(actionMap.get("btnDiffSpecimenTaxa"));
    _btnDiffSpecimenTaxa.setEnabled(false);
    _btnDiffSpecimenTaxa.setPreferredSize(new Dimension(30, 30));
    _pnlAvailableCharactersButtons.add(_btnDiffSpecimenTaxa);

    _btnSetTolerance = new JButton();
    _btnSetTolerance.setAction(actionMap.get("btnSetTolerance"));
    _btnSetTolerance.setPreferredSize(new Dimension(30, 30));
    _btnSetTolerance.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnSetTolerance);

    _btnSetMatch = new JButton();
    _btnSetMatch.setAction(actionMap.get("btnSetMatch"));
    _btnSetMatch.setVisible(_advancedMode);
    _btnSetMatch.setPreferredSize(new Dimension(30, 30));
    _btnSetMatch.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnSetMatch);

    _btnSubsetCharacters = new JButton();
    _btnSubsetCharacters.setAction(actionMap.get("btnSubsetCharacters"));
    _btnSubsetCharacters.setPreferredSize(new Dimension(30, 30));
    _btnSubsetCharacters.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnSubsetCharacters);

    _btnFindCharacter = new JButton();
    _btnFindCharacter.setAction(actionMap.get("btnFindCharacter"));
    _btnFindCharacter.setPreferredSize(new Dimension(30, 30));
    _btnFindCharacter.setEnabled(false);
    _pnlAvailableCharactersButtons.add(_btnFindCharacter);

    _pnlAvailableCharactersButtons.setEnabled(false);

    _pnlUsedCharacters = new JPanel();
    _innerSplitPaneLeft.setRightComponent(_pnlUsedCharacters);
    _pnlUsedCharacters.setLayout(new BorderLayout(0, 0));

    _sclPnUsedCharacters = new JScrollPane();
    _pnlUsedCharacters.add(_sclPnUsedCharacters, BorderLayout.CENTER);

    _listUsedCharacters = new JList();
    _listUsedCharacters.setCellRenderer(_usedCharactersListCellRenderer);
    _listUsedCharacters.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
    _listUsedCharacters.addMouseListener(new MouseInputAdapter() {

        @Override
        public void mouseClicked(MouseEvent e) {
            if (e.getClickCount() >= 2) {
                int selectedIndex = _listUsedCharacters.getSelectedIndex();
                if (selectedIndex >= 0) {
                    try {
                        Attribute attr = (Attribute) _usedCharacterListModel.getElementAt(selectedIndex);

                        if (_context.charactersFixed() && _context.getFixedCharactersList()
                                .contains(attr.getCharacter().getCharacterId())) {
                            return;
                        }

                        executeDirective(new ChangeDirective(),
                                Integer.toString(attr.getCharacter().getCharacterId()));
                    } catch (Exception ex) {
                        ex.printStackTrace();
                    }
                }
            }
        }
    });

    _sclPnUsedCharacters.setViewportView(_listUsedCharacters);

    _pnlUsedCharactersHeader = new JPanel();
    _pnlUsedCharacters.add(_pnlUsedCharactersHeader, BorderLayout.NORTH);
    _pnlUsedCharactersHeader.setLayout(new BorderLayout(0, 0));

    _lblNumUsedCharacters = new JLabel();
    _lblNumUsedCharacters.setBorder(new EmptyBorder(7, 5, 7, 0));
    _lblNumUsedCharacters.setFont(new Font("Tahoma", Font.PLAIN, 15));
    _lblNumUsedCharacters.setText(MessageFormat.format(usedCharactersCaption, 0));
    _pnlUsedCharactersHeader.add(_lblNumUsedCharacters, BorderLayout.WEST);

    _innerSplitPaneRight = new JSplitPane();
    _innerSplitPaneRight.setMinimumSize(new Dimension(25, 25));
    _innerSplitPaneRight.setDividerSize(3);
    _innerSplitPaneRight.setResizeWeight(0.5);
    _innerSplitPaneRight.setContinuousLayout(true);
    _innerSplitPaneRight.setOrientation(JSplitPane.VERTICAL_SPLIT);
    _rootSplitPane.setRightComponent(_innerSplitPaneRight);

    _pnlRemainingTaxa = new JPanel();
    _innerSplitPaneRight.setLeftComponent(_pnlRemainingTaxa);
    _pnlRemainingTaxa.setLayout(new BorderLayout(0, 0));

    _sclPnRemainingTaxa = new JScrollPane();
    _pnlRemainingTaxa.add(_sclPnRemainingTaxa, BorderLayout.CENTER);

    _listRemainingTaxa = new JList();

    _listRemainingTaxa.addMouseListener(new MouseInputAdapter() {

        @Override
        public void mouseClicked(MouseEvent e) {
            if (e.getClickCount() >= 2) {
                displayInfoForSelectedTaxa();
            }
        }
    });

    _sclPnRemainingTaxa.setViewportView(_listRemainingTaxa);

    _pnlRemainingTaxaHeader = new JPanel();
    _pnlRemainingTaxa.add(_pnlRemainingTaxaHeader, BorderLayout.NORTH);
    _pnlRemainingTaxaHeader.setLayout(new BorderLayout(0, 0));

    _lblNumRemainingTaxa = new JLabel();
    _lblNumRemainingTaxa.setBorder(new EmptyBorder(0, 5, 0, 0));
    _lblNumRemainingTaxa.setFont(new Font("Tahoma", Font.PLAIN, 15));
    _lblNumRemainingTaxa.setText(MessageFormat.format(remainingTaxaCaption, 0));
    _pnlRemainingTaxaHeader.add(_lblNumRemainingTaxa, BorderLayout.WEST);

    _pnlRemainingTaxaButtons = new JPanel();
    FlowLayout fl_pnlRemainingTaxaButtons = (FlowLayout) _pnlRemainingTaxaButtons.getLayout();
    fl_pnlRemainingTaxaButtons.setVgap(2);
    fl_pnlRemainingTaxaButtons.setHgap(2);
    _pnlRemainingTaxaHeader.add(_pnlRemainingTaxaButtons, BorderLayout.EAST);

    // All toolbar buttons should be disabled until a dataset is loaded.
    _btnTaxonInfo = new JButton();
    _btnTaxonInfo.setAction(actionMap.get("btnTaxonInfo"));
    _btnTaxonInfo.setPreferredSize(new Dimension(30, 30));
    _btnTaxonInfo.setEnabled(false);
    _pnlRemainingTaxaButtons.add(_btnTaxonInfo);

    _btnDiffTaxa = new JButton();
    _btnDiffTaxa.setAction(actionMap.get("btnDiffTaxa"));
    _btnDiffTaxa.setPreferredSize(new Dimension(30, 30));
    _btnDiffTaxa.setEnabled(false);
    _pnlRemainingTaxaButtons.add(_btnDiffTaxa);

    _btnSubsetTaxa = new JButton();
    _btnSubsetTaxa.setAction(actionMap.get("btnSubsetTaxa"));
    _btnSubsetTaxa.setPreferredSize(new Dimension(30, 30));
    _btnSubsetTaxa.setEnabled(false);
    _pnlRemainingTaxaButtons.add(_btnSubsetTaxa);

    _btnFindTaxon = new JButton();
    _btnFindTaxon.setAction(actionMap.get("btnFindTaxon"));
    _btnFindTaxon.setPreferredSize(new Dimension(30, 30));
    _btnFindTaxon.setEnabled(false);
    _pnlRemainingTaxaButtons.add(_btnFindTaxon);

    _pnlEliminatedTaxa = new JPanel();
    _innerSplitPaneRight.setRightComponent(_pnlEliminatedTaxa);
    _pnlEliminatedTaxa.setLayout(new BorderLayout(0, 0));

    _sclPnEliminatedTaxa = new JScrollPane();
    _pnlEliminatedTaxa.add(_sclPnEliminatedTaxa, BorderLayout.CENTER);

    _listEliminatedTaxa = new JList();

    _listEliminatedTaxa.addMouseListener(new MouseInputAdapter() {

        @Override
        public void mouseClicked(MouseEvent e) {
            if (e.getClickCount() >= 2) {
                displayInfoForSelectedTaxa();
            }
        }
    });

    _sclPnEliminatedTaxa.setViewportView(_listEliminatedTaxa);

    _pnlEliminatedTaxaHeader = new JPanel();
    _pnlEliminatedTaxa.add(_pnlEliminatedTaxaHeader, BorderLayout.NORTH);
    _pnlEliminatedTaxaHeader.setLayout(new BorderLayout(0, 0));

    _lblEliminatedTaxa = new JLabel();
    _lblEliminatedTaxa.setBorder(new EmptyBorder(7, 5, 7, 0));
    _lblEliminatedTaxa.setFont(new Font("Tahoma", Font.PLAIN, 15));
    _lblEliminatedTaxa.setText(MessageFormat.format(eliminatedTaxaCaption, 0));
    _pnlEliminatedTaxaHeader.add(_lblEliminatedTaxa, BorderLayout.WEST);

    JMenuBar menuBar = buildMenus(_advancedMode);
    getMainView().setMenuBar(menuBar);

    _txtFldCmdBar = new JTextField();
    _txtFldCmdBar.setCaretColor(Color.WHITE);
    _txtFldCmdBar.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent arg0) {
            String cmdStr = _txtFldCmdBar.getText();

            cmdStr = cmdStr.trim();
            if (_cmdMenus.containsKey(cmdStr)) {
                JMenu cmdMenu = _cmdMenus.get(cmdStr);
                cmdMenu.doClick();
            } else {
                _context.parseAndExecuteDirective(cmdStr);
            }
            _txtFldCmdBar.setText(null);
        }
    });

    _txtFldCmdBar.setFont(new Font("Courier New", Font.BOLD, 13));
    _txtFldCmdBar.setForeground(SystemColor.text);
    _txtFldCmdBar.setBackground(Color.BLACK);
    _txtFldCmdBar.setOpaque(true);
    _txtFldCmdBar.setVisible(_advancedMode);
    _rootPanel.add(_txtFldCmdBar, BorderLayout.SOUTH);
    _txtFldCmdBar.setColumns(10);

    _logDialog = new RtfReportDisplayDialog(getMainFrame(), new SimpleRtfEditorKit(null), null, logDialogTitle);

    // Set context-sensitive help keys for toolbar buttons
    _helpController.setHelpKeyForComponent(_btnRestart, HELP_ID_CHARACTERS_TOOLBAR_RESTART);
    _helpController.setHelpKeyForComponent(_btnBestOrder, HELP_ID_CHARACTERS_TOOLBAR_BEST);
    _helpController.setHelpKeyForComponent(_btnSeparate, HELP_ID_CHARACTERS_TOOLBAR_SEPARATE);
    _helpController.setHelpKeyForComponent(_btnNaturalOrder, HELP_ID_CHARACTERS_TOOLBAR_NATURAL);
    _helpController.setHelpKeyForComponent(_btnDiffSpecimenTaxa,
            HELP_ID_CHARACTERS_TOOLBAR_DIFF_SPECIMEN_REMAINING);
    _helpController.setHelpKeyForComponent(_btnSetTolerance, HELP_ID_CHARACTERS_TOOLBAR_TOLERANCE);
    _helpController.setHelpKeyForComponent(_btnSetMatch, HELP_ID_CHARACTERS_TOOLBAR_SET_MATCH);
    _helpController.setHelpKeyForComponent(_btnSubsetCharacters, HELP_ID_CHARACTERS_TOOLBAR_SUBSET_CHARACTERS);
    _helpController.setHelpKeyForComponent(_btnFindCharacter, HELP_ID_CHARACTERS_TOOLBAR_FIND_CHARACTERS);

    _helpController.setHelpKeyForComponent(_btnTaxonInfo, HELP_ID_TAXA_TOOLBAR_INFO);
    _helpController.setHelpKeyForComponent(_btnDiffTaxa, HELP_ID_TAXA_TOOLBAR_DIFF_TAXA);
    _helpController.setHelpKeyForComponent(_btnSubsetTaxa, HELP_ID_TAXA_TOOLBAR_SUBSET_TAXA);
    _helpController.setHelpKeyForComponent(_btnFindTaxon, HELP_ID_TAXA_TOOLBAR_FIND_TAXA);

    // This mouse listener on the default glasspane is to assist with
    // context senstive help. It intercepts the mouse events,
    // determines what component was being clicked on, then takes the
    // appropriate action to provide help for the component
    _defaultGlassPane.addMouseListener(new MouseAdapter() {

        @Override
        public void mouseClicked(MouseEvent e) {
            // Determine what point has been clicked on
            Point glassPanePoint = e.getPoint();
            Point containerPoint = SwingUtilities.convertPoint(getMainFrame().getGlassPane(), glassPanePoint,
                    getMainFrame().getContentPane());
            Component component = SwingUtilities.getDeepestComponentAt(getMainFrame().getContentPane(),
                    containerPoint.x, containerPoint.y);

            // Get the java help ID for this component. If none has been
            // defined, this will be null
            String helpID = _helpController.getHelpKeyForComponent(component);

            // change the cursor back to the normal one and take down the
            // classpane
            mainFrame.setCursor(Cursor.getDefaultCursor());
            mainFrame.getGlassPane().setVisible(false);

            // If a help ID was found, display the related help page in the
            // help viewer
            if (_helpController.getHelpKeyForComponent(component) != null) {
                _helpController.helpAction().actionPerformed(new ActionEvent(component, 0, null));
                _helpController.displayHelpTopic(mainFrame, helpID);
            } else {
                // If a dynamically-defined toolbar button was clicked, show
                // the help for this button in the ToolbarHelpDialog.
                if (component instanceof JButton) {
                    JButton button = (JButton) component;
                    if (_dynamicButtonsFullHelp.containsKey(button)) {
                        String fullHelpText = _dynamicButtonsFullHelp.get(button);
                        if (fullHelpText == null) {
                            fullHelpText = noHelpAvailableCaption;
                        }
                        RTFBuilder builder = new RTFBuilder();
                        builder.startDocument();
                        builder.appendText(fullHelpText);
                        builder.endDocument();
                        ToolbarHelpDialog dlg = new ToolbarHelpDialog(mainFrame, builder.toString(),
                                button.getIcon());
                        show(dlg);
                    }
                }
            }
        }
    });

    show(_rootPanel);
}

From source file:display.ANNFileFilter.java

License:asdf

Yanng() {
    JPanel toolBars;/*w  w  w  .j av  a 2 s . c o m*/
    JMenuBar menuBar;
    JToolBar utilBar, fileBar;
    JButton toJava, runner, trainer, modify, getTraininger, inputer, newwer, saver, saveAser, loader, helper;
    JMenu file;
    final JMenu util;
    JMenu help;

    ImageIcon IJava, IRun, ITrain, IModify, INew, ISave, ILoad, IGetTrainingSet, IGetInput, ISaveAs;

    //initialize main window
    mainWindow = new JFrame("YANNG - Yet Another Neural Network (simulator) Generator");
    mainWindow.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
    mainWindow.setLayout(new BorderLayout());
    mainWindow.setSize(675, 525);
    mainWindow.setIconImage(new ImageIcon(ClassLoader.getSystemResource("display/icons/logo.png")).getImage());
    loadingImage = new ImageIcon(ClassLoader.getSystemResource("display/icons/loading.gif"));

    path = new Vector<String>();
    net = new Vector<NeuralNetwork>();
    oneNet = new Vector<JPanel>();
    tabPanel = new Vector<JPanel>();
    readOut = new Vector<JTextArea>();
    readOutLocale = new Vector<JScrollPane>();
    loadingBar = new Vector<JLabel>();
    title = new Vector<JLabel>();
    close = new Vector<JButton>();
    netName = new Vector<StringBuffer>();
    netKind = new Vector<StringBuffer>();

    resultsPane = new JTabbedPane();

    mainWindow.add(resultsPane);

    toolBars = new JPanel();
    toolBars.setLayout(new FlowLayout(FlowLayout.LEFT));

    //create utilities toolbar with 3 buttons
    utilBar = new JToolBar("Utilities");
    IRun = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/running.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ITrain = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/training.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IModify = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/modifyNet.png"))
            .getImage().getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetTrainingSet = new ImageIcon(
            new ImageIcon(ClassLoader.getSystemResource("display/icons/trainingSet.png")).getImage()
                    .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetInput = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/input.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    //set the icons/tooltips for the utilitiy bar    
    runner = new JButton(IRun);
    runner.setToolTipText(
            "<html>Run  the  Current  Neural   Network<br>Once Through with the Current Input</html>");

    trainer = new JButton(ITrain);
    trainer.setToolTipText(
            "<html>Train the Network with the Current<br>Configuration  and  Training  Set</html>");

    modify = new JButton(IModify);
    modify.setToolTipText("<html>Modify the Network<br>for Fun and Profit</html>");

    getTraininger = new JButton(IGetTrainingSet);
    getTraininger.setToolTipText("Get Training Set from File");

    inputer = new JButton(IGetInput);
    inputer.setToolTipText("Get Input Set from File");

    utilBar.add(inputer);
    utilBar.add(runner);
    utilBar.add(getTraininger);
    utilBar.add(trainer);
    utilBar.add(modify);

    //create file toolbar
    fileBar = new JToolBar("file");
    ISaveAs = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/saveAs.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    INew = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/new.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ISave = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/save.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ILoad = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/load.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IJava = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/toJava.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));

    newwer = new JButton(INew);
    newwer.setToolTipText("Create New Neural Network");

    saver = new JButton(ISave);
    saver.setToolTipText("Save Current Network Configuration");

    saveAser = new JButton(ISaveAs);
    saveAser.setToolTipText("Save Network As");

    loader = new JButton(ILoad);
    loader.setToolTipText("Load Network Configuration from File");

    toJava = new JButton(IJava);
    toJava.setToolTipText("Export Network to Java Project");

    fileBar.add(newwer);
    fileBar.add(loader);
    fileBar.add(saver);
    fileBar.add(saveAser);
    fileBar.add(toJava);
    toolBars.add(fileBar);
    toolBars.add(utilBar);
    mainWindow.add(toolBars, BorderLayout.NORTH);

    //create a menubar with three menus on it
    menuBar = new JMenuBar();
    file = new JMenu("File");
    util = new JMenu("Utilities");
    help = new JMenu("Help");

    //add menu items for file menu
    load = new JMenuItem("Load Network Configuration");
    newNet = new JMenuItem("New Network");
    saveAs = new JMenuItem("Save Network As");
    save = new JMenuItem("Save Current Configuration");
    exportNet = new JMenuItem("Export Network to Java Project");
    exportOutput = new JMenuItem("Export Output to Text File");
    file.add(load);
    file.add(newNet);
    file.addSeparator();
    file.add(saveAs);
    file.add(save);
    file.addSeparator();
    file.add(exportNet);
    file.add(exportOutput);
    menuBar.add(file);

    //add menu items for utilities menu
    changeConfig = new JMenuItem("Modify Network Settings");
    getInput = new JMenuItem("Get Input From File");
    getTraining = new JMenuItem("Get Training Set From File");
    run = new JMenuItem("Run");
    train = new JMenuItem("Train");
    getColorMap = new JMenuItem("View Color Map");
    getColorMap.setVisible(false);
    util.add(changeConfig);
    util.addSeparator();
    util.add(getInput);
    util.add(getTraining);
    util.addSeparator();
    util.add(run);
    util.add(train);
    menuBar.add(util);

    //add menu items for help menu
    quickStart = new JMenuItem("Quick Start Guide");
    searchHelp = new JMenuItem("Programming with Yanng");
    about = new JMenuItem("License");
    links = new JMenuItem("<html>Links to Resources<br>about Neural Networks</html>");
    help.add(quickStart);
    help.addSeparator();
    help.add(searchHelp);
    help.addSeparator();
    help.add(about);
    help.addSeparator();
    help.add(links);
    menuBar.add(help);

    mainWindow.setJMenuBar(menuBar);

    //opens the quickstart guide
    quickStart.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/quick-start.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/quick-start.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/quick-start.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    links.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(
                        URLDecoder.decode(ClassLoader.getSystemResource("ann/links.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/links.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/links.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //Displays license information
    about.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            JTextArea x = new JTextArea("Copyright [2015] [Sam Findler and Michael Scott]\n" + "\n"
                    + "Licensed under the Apache License, Version 2.0 (the \"License\");\n"
                    + "you may not use this file except in compliance with the License.\n"
                    + "You may obtain a copy of the License at\n" + "\n"
                    + "http://www.apache.org/licenses/LICENSE-2.0\n" + "\n"
                    + "Unless required by applicable law or agreed to in writing, software\n"
                    + "distributed under the License is distributed on an \"AS IS\" BASIS,\n"
                    + "WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n"
                    + "See the License for the specific language governing permissions and\n"
                    + "limitations under the License.");
            JDialog aboutDialog = new JDialog(mainWindow, "License", true);
            aboutDialog.setSize(500, 250);
            aboutDialog.setLayout(new FlowLayout());
            aboutDialog.add(x);
            x.setEditable(false);
            aboutDialog.setVisible(true);
        }
    });

    //opens the more technical user guide
    searchHelp.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/technical-manual.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/technical-manual.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/technical-manual.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });
    //class trains the neural network in the background while the loading bar displays, then prints out the output/connections listings/average error to the readOut pane
    class Trainer extends SwingWorker<NeuralNetwork, Object> {
        protected NeuralNetwork doInBackground() {
            net.get(resultsPane.getSelectedIndex()).trainNet();
            setProgress(1);
            return net.get(resultsPane.getSelectedIndex());
        }

        public void done() {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                    JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                            "Formatting Error", JOptionPane.ERROR_MESSAGE);
                else {
                    printConnections();
                    readOut.get(resultsPane.getSelectedIndex()).append(
                            "Results of Training " + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                    printOutput();
                    readOut.get(resultsPane.getSelectedIndex()).append("Average Error = "
                            + net.get(resultsPane.getSelectedIndex()).getAverageError() + "\n\n");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                printInitMap();
                loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                JOptionPane.showMessageDialog(mainWindow,
                        "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
            }
        }

    }
    //starts the training class when train is pressed in the utilities menu
    train.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            if (resultsPane.getTabCount() != 0) {
                if (net.get(resultsPane.getSelectedIndex()).getTrainingSet() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            }

            else
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });
    //associates the toolbar button with the jump rope guy with the training button on the utilities menu
    trainer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : train.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //runs through one set of inputs and prints the results to the readOut pane  
    run.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputSet() != null) {
                    net.get(resultsPane.getSelectedIndex()).runNet();
                    if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                        JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    else {
                        readOut.get(resultsPane.getSelectedIndex()).append("Results of Running through Network "
                                + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                        printOutput();
                        System.out.println("Results:");
                        for (int i = 0; i < net.get(resultsPane.getSelectedIndex())
                                .getOutputSet().length; i++) {
                            System.out.println("\n   Output of Input Vector " + i + ":");
                            for (int j = 0; j < net.get(resultsPane.getSelectedIndex())
                                    .getOutputSet()[i].length; j++) {
                                System.out.println("      Output Node " + j + " = "
                                        + net.get(resultsPane.getSelectedIndex()).getOutputSet()[i][j]);
                            }
                        }
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                    }
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputValues() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else
                JOptionPane.showMessageDialog(mainWindow, "Can't Run Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });

    runner.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : run.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //the following code is for the getTraining button under utilities
    getTrainingSet = new JFileChooser();
    getTrainingSet.setFileFilter(new TrainingFileFilter());

    getTraining.addActionListener(new ActionListener() {
        //this method/class gets a training set (tsv/csv file) and parse it through the neural network.  Kind of test that the file is formatted correctly, but if the data is wrong, there isn't much it can do.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile()))
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                        else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                            printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    getTraininger.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getTraining.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //this ends the getTraining section of the code   

    getInput.addActionListener(new ActionListener() {
        //this method/class gets an input set (tsv/csv file) and parses it through the neural network.  Somewhat tests that the file is formatted correctly, but cannot give a garuntee.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseInputSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map"))
                                printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                else
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't train nonexistent network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //opens and displays a color map of a SOM
    getColorMap.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                    MapNode[][] map;

                    map = net.get(resultsPane.getSelectedIndex()).getMapArray();

                    int lValue = net.get(resultsPane.getSelectedIndex()).getLatticeValue();

                    int inputDimensions = net.get(resultsPane.getSelectedIndex()).getInputDimensions();

                    int[][] colorValues = new int[(lValue * lValue)][3];

                    double dMax = net.get(resultsPane.getSelectedIndex()).getDataMax();
                    double dMin = net.get(resultsPane.getSelectedIndex()).getDataMin();

                    int count = 0;

                    for (int i = 0; i < lValue; i++) {
                        for (int j = 0; j < lValue; j++) {
                            for (int k = 0; k < 3; k++) {
                                Vector tempVec = map[i][j].getWeights();
                                if (inputDimensions % 3 == 0) {
                                    colorValues[count][k] = Integer.parseInt(String.valueOf((Math.round(255
                                            * (Double.parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                                if (inputDimensions % 3 == 1) {
                                    if (k == 0)
                                        colorValues[count][k] = 0;
                                    if (k == 1) {
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(0))))))));
                                    }
                                    if (k == 2)
                                        colorValues[count][k] = 0;
                                }
                                if (inputDimensions % 3 == 2) {
                                    if (k == 2) {
                                        colorValues[count][k] = 0;
                                    } else
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                            }
                            count++;
                        }
                    }

                    JFrame frame = new JFrame();

                    frame.setTitle("Color Map");
                    frame.setPreferredSize(new Dimension(525, 500));
                    frame.add(new DrawPanel(colorValues, lValue));
                    frame.pack();
                    frame.setVisible(true);
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow,
                            "This Feauture is only available for Self-Organizing Maps", "Not a Som Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Network does not exist", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    inputer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getInput.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    getNet = new JFileChooser();
    getNet.setFileFilter(new ANNFileFilter());

    //saves the net, or opens save as dialog if net is not saved yet
    save.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (!path.get(resultsPane.getSelectedIndex()).equals("")) {
                    net.get(resultsPane.getSelectedIndex())
                            .save(new File(path.get(resultsPane.getSelectedIndex())));
                }

                else {
                    for (ActionListener a : saveAs.getActionListeners()) {
                        a.actionPerformed(ae);
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't save NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saver.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : save.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //opens dialog for saving the net
    saveAs.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result, override;
                String tempName;
                result = getNet.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if ((new File(tempName = getNet.getSelectedFile().getName())).exists()
                            || (new File(tempName + ".ffn")).exists() || (new File(tempName + ".som")).exists()
                            || (new File(tempName + ".hfn")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                tempName + " already exists, do you want to override?", "File Exists",
                                JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                                if (tempName.endsWith(".ffn") || tempName.endsWith(".som")) {
                                    netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".ffn"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".som"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                }
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());

                            } else
                                JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                        JOptionPane.ERROR_MESSAGE);
                        }
                    } else {
                        if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                            if (tempName.endsWith(".ffn") || tempName.endsWith(".som")
                                    || tempName.endsWith(".hfn")) {
                                netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".ffn"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".som"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());
                            }
                        } else
                            JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                    JOptionPane.ERROR_MESSAGE);
                    }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Save", "Existetial Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saveAser.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : saveAs.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //loads a net
    load.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result;
            boolean test = true;
            String tempName;
            result = getNet.showOpenDialog(mainWindow);
            if (result == JFileChooser.APPROVE_OPTION) {
                tempName = getNet.getSelectedFile().getName();
                for (StringBuffer names : netName) {
                    if (names.toString().equals(tempName))
                        test = false;
                }
                if (test != false) {
                    //creates and sets the network configuration
                    if (tempName.endsWith(".ffn")) {
                        net.add(new FullyConnectedFeedForwardNet());
                    }
                    if (tempName.endsWith(".som")) {
                        net.add(new SelfOrganizingMap());
                    }
                    if (net.get(openNets).load(getNet.getSelectedFile()))
                        try {
                            //adds a close button to the top corner of each tab
                            title.add(new JLabel(tempName + " "));
                            close.add(new JButton("X"));
                            close.get(openNets).setActionCommand(tempName);
                            close.get(openNets)
                                    .setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                            close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                            tabPanel.add(new JPanel(new GridBagLayout()));
                            tabPanel.get(openNets).setOpaque(false);
                            GridBagConstraints grid = new GridBagConstraints();
                            grid.fill = GridBagConstraints.HORIZONTAL;
                            grid.gridx = 0;
                            grid.gridy = 0;
                            grid.weightx = 1;
                            tabPanel.get(openNets).add(title.get(openNets), grid);
                            grid.gridx = 1;
                            grid.gridy = 0;
                            grid.weightx = 0;
                            tabPanel.get(openNets).add(close.get(openNets), grid);

                            //adds a loading bar
                            loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                            loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                            loadingBar.get(openNets).setVisible(false);

                            path.add(getNet.getSelectedFile().getPath());

                            netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                            netName.add(new StringBuffer(tempName));
                            oneNet.add(new JPanel());
                            oneNet.get(openNets).setLayout(new GridBagLayout());
                            GridBagConstraints constraints = new GridBagConstraints();
                            constraints.fill = GridBagConstraints.BOTH;

                            //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                            readOut.add(new JTextArea(""));
                            readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                            readOut.get(openNets).setEditable(false);
                            constraints.gridx = 0;
                            constraints.gridy = 0;
                            constraints.weighty = 1.0;
                            constraints.weightx = 1.0;
                            constraints.gridwidth = 2;
                            constraints.ipady = 90;
                            oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                            constraints.fill = GridBagConstraints.HORIZONTAL;
                            constraints.gridx = 0;
                            constraints.gridy = 1;
                            constraints.ipady = 0;
                            constraints.gridwidth = 2;
                            constraints.anchor = GridBagConstraints.PAGE_END;

                            //add everythign to the tabbed pane
                            oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                            resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                            resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                            //display the starting configuration of the network
                            readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                            resultsPane.setSelectedIndex(openNets++);
                            if (tempName.endsWith(".ffn"))
                                printConnections();
                            if (tempName.endsWith(".som")) {
                                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                                printInitMap();
                            }

                            //unfortunately difficult way that I made to add the close button functionality to close a tab
                            //it works, but there has to be a better way to do this
                            close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                                public void actionPerformed(final ActionEvent ae) {
                                    int result;
                                    result = 0;
                                    for (StringBuffer names : netName) {
                                        if (ae.getActionCommand().equals(names.toString())) {
                                            result = JOptionPane.showConfirmDialog(createFFN,
                                                    "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                    "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                            resultsPane.setSelectedIndex(netName.indexOf(names));
                                        }
                                    }
                                    if (result == JOptionPane.OK_OPTION) {
                                        net.remove(resultsPane.getSelectedIndex());
                                        oneNet.remove(resultsPane.getSelectedIndex());
                                        readOutLocale.remove(resultsPane.getSelectedIndex());
                                        readOut.remove(resultsPane.getSelectedIndex());
                                        loadingBar.remove(resultsPane.getSelectedIndex());
                                        tabPanel.remove(resultsPane.getSelectedIndex());
                                        title.remove(resultsPane.getSelectedIndex());
                                        close.remove(resultsPane.getSelectedIndex());
                                        netName.remove(resultsPane.getSelectedIndex());
                                        resultsPane.remove(resultsPane.getSelectedIndex());
                                        openNets--;
                                    }
                                }
                            });
                        } catch (Error e) {
                            JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                    "Formatting Error", JOptionPane.ERROR_MESSAGE);
                        }
                    else {
                        //if file was unable to load, remove the newly created neural network and display an error message
                        net.remove(openNets);
                        JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    }
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow, "File Already Open", "Duality Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //associates the load toolbar button with load from the file menu
    loader.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : load.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    textFileChooser = new JFileChooser();
    textFileChooser.setFileFilter(new TextFileFilter());

    //exports all text from readout to a text file
    exportOutput.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = textFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    if (textFileChooser.getSelectedFile().exists()
                            || (new File(textFileChooser.getSelectedFile().getPath() + ".txt")).exists()) {
                        result = JOptionPane.showConfirmDialog(mainWindow,
                                "The File you have selected already Exists, do you want to Overwrite it?",
                                "File Exits", JOptionPane.YES_NO_OPTION);
                        if (result == JOptionPane.YES_OPTION) {
                            try {
                                if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                    FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                else
                                    FileUtils.writeStringToFile(
                                            new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                            } catch (Exception e) {
                                JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                        JOptionPane.ERROR_MESSAGE);
                            }
                        }
                    } else {
                        try {
                            if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            else
                                FileUtils.writeStringToFile(
                                        new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                        } catch (Exception e) {
                            JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                    JOptionPane.ERROR_MESSAGE);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Export", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    projectFileChooser = new JFileChooser();
    projectFileChooser.setFileFilter(new ProjectFileFilter());

    //exports a neural network to a java/android project
    exportNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result, override, override2;
            String tempName;
            String templateFile;
            String directory;
            String path;
            if (resultsPane.getTabCount() != 0) {
                result = projectFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    path = projectFileChooser.getSelectedFile().getPath();
                    directory = projectFileChooser.getSelectedFile().getPath().substring(0,
                            projectFileChooser.getSelectedFile().getPath().lastIndexOf(File.separator));
                    tempName = projectFileChooser.getSelectedFile().getName();
                    if (projectFileChooser.getSelectedFile().exists()
                            || (new File(directory, tempName + ".java")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                "Java Class File" + tempName + " already exists, do you want to overwrite it?",
                                "File Exists", JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            try {
                                if (!(new File(directory, "ann")).exists())
                                    FileUtils.copyDirectoryToDirectory(
                                            FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                            new File(directory));
                                if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".ffn");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".ffn")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".som");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".som")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                }
                            } catch (IOException io) {
                                System.out.println(io);
                            }

                        }
                    } else {
                        try {
                            if (!(new File(directory, "ann")).exists())
                                FileUtils.copyDirectoryToDirectory(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                        new File(directory));
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".ffn");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory + File.separator
                                        + (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory + File.separator + tempName + ".ffn"))
                                                .exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".som");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory,
                                        (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory, tempName + ".som")).exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            }
                        } catch (IOException io) {
                            System.out.println(io);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Export NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    toJava.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : exportNet.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    //settings menu
    changeConfig.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {

                modifyFFNDialog = new JDialog(mainWindow, "Network Settings", true);
                modifyFFNDialog.setSize(500, 500);
                modifyFFNDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifyFFNDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                learningRateL = new JLabel("Set Learning Rate:");
                modifyFFNDialog.add(learningRateL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                learningRateTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                learningRateTF.setText("");
                modifyFFNDialog.add(learningRateTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                momentumL = new JLabel("Set Momentum:");
                modifyFFNDialog.add(momentumL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                momentumTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                momentumTF.setText("");
                modifyFFNDialog.add(momentumTF, asdf);
                asdf.gridx = 7;
                asdf.gridy = 5;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                /*asdf.gridwidth = 2;
                asdf.gridheight = 1;
                asdf.gridx = 7;
                asdf.gridy = 6;
                setNoise = new JLabel("Use Noise: ");
                modifyFFNDialog.add(setNoise, asdf);
                asdf.gridx = 7;
                asdf.gridy = 7;
                asdf.gridwidth = 1;
                noiseOn = new JRadioButton("yes");
                noiseOff = new JRadioButton("no");
                noiseGroup = new ButtonGroup();
                noiseGroup.add(noiseOn);
                noiseGroup.add(noiseOff);
                modifyFFNDialog.add(noiseOn,asdf);
                asdf.gridx = 8;
                asdf.gridy = 7;
                modifyFFNDialog.add(noiseOff,asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.gridwidth = 2;
                setNoiseRange = new JButton("Set Noise Range");
                modifyFFNDialog.add(setNoiseRange,asdf);
                asdf.gridx = 7;
                asdf.gridy = 9;
                setNoiseTiming = new JButton("Set Noise Timing");
                modifyFFNDialog.add(setNoiseTiming,asdf);*/
                asdf.gridx = 7;
                asdf.gridy = 10;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 11;
                setTrainingStyle = new JLabel("Set Training Style:");
                modifyFFNDialog.add(setTrainingStyle, asdf);
                asdf.gridx = 7;
                asdf.gridy = 12;
                asdf.gridwidth = 1;
                batchOn = new JRadioButton("batch");
                onlineOn = new JRadioButton("online");
                batchGroup = new ButtonGroup();
                batchGroup.add(batchOn);
                batchGroup.add(onlineOn);
                modifyFFNDialog.add(batchOn, asdf);
                asdf.gridx = 8;
                modifyFFNDialog.add(onlineOn, asdf);
                asdf.gridx = 7;
                asdf.gridy = 13;
                asdf.gridwidth = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 14;
                modifyBiases = new JButton("Modify Biases");
                modifyFFNDialog.add(modifyBiases, asdf);
                asdf.gridx = 7;
                asdf.gridy = 15;
                trainingCompletionButton = new JButton("Modify End Condition");
                modifyFFNDialog.add(trainingCompletionButton, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifyFFN = new JButton("OK");
                modifyFFNDialog.add(modifyFFN, asdf);
                asdf.gridx = 7;
                cancelModifyFFN = new JButton("Cancel");
                modifyFFNDialog.add(cancelModifyFFN, asdf);
                settings.setText("");
                settings.append(
                        "\n\n\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                settings.append("\n\nTraining Style: ");
                if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                    settings.append("batch");
                    batchOn.setSelected(true);
                } else {
                    settings.append("online");
                    onlineOn.setSelected(true);
                }
                settings.append("\n\nTraining End Condition: ");
                if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                    settings.append("Iterative");
                    settings.append(
                            "\n\nIterations: " + net.get(resultsPane.getSelectedIndex()).getIterations());
                } else {
                    settings.append("Ideal Error");
                    settings.append(
                            "\n\nIdeal Error: " + net.get(resultsPane.getSelectedIndex()).getIdealError());
                }

                //expiremental feature, needs work on the back end to be properly implemented   
                modifyBiases.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        JButton addBiases, removeBiases;

                        biasesDialog = new JDialog(modifyFFNDialog, "Set Biases");
                        biasesDialog.setSize(200, 46);
                        biasesDialog.setLayout(new GridLayout(2, 1));
                        addBiases = new JButton("Add Bias");
                        removeBiases = new JButton("Remove Bias");

                        biasesDialog.add(addBiases);
                        biasesDialog.add(removeBiases);

                        addBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel, whatBiasValueLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode, whatBiasValue;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                addBiasDialog = new JDialog(modifyFFNDialog, "Add Bias");
                                addBiasDialog.setSize(756, 90);
                                addBiasDialog.setLayout(new GridLayout(4, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will get the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasValueLabel = new JLabel("What Value will the Bias have?");
                                whatBiasValue = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                addBiasDialog.add(howManyBiasLayersLabel);
                                addBiasDialog.add(howManyBiasLayers);
                                addBiasDialog.add(whatBiasNodeLabel);
                                addBiasDialog.add(whatBiasNode);
                                addBiasDialog.add(whatBiasValueLabel);
                                addBiasDialog.add(whatBiasValue);
                                addBiasDialog.add(addBiasOK);
                                addBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")
                                                && !whatBiasValue.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).addBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1,
                                                    Double.parseDouble(whatBiasValue.getText()))) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                addBiasDialog.setVisible(true);
                            }
                        });

                        removeBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                removeBiasDialog = new JDialog(modifyFFNDialog, "Remove Bias");
                                removeBiasDialog.setSize(756, 90);
                                removeBiasDialog.setLayout(new GridLayout(3, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will lose the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                removeBiasDialog.add(howManyBiasLayersLabel);
                                removeBiasDialog.add(howManyBiasLayers);
                                removeBiasDialog.add(whatBiasNodeLabel);
                                removeBiasDialog.add(whatBiasNode);
                                removeBiasDialog.add(addBiasOK);
                                removeBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).removeBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1)) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                removeBiasDialog.setVisible(true);
                            }
                        });

                        biasesDialog.setVisible(true);

                    }
                });

                trainingCompletionButton.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        final JDialog iterationsDialog;
                        JLabel numberOfIterationsLabel;
                        final JFormattedTextField numberOfIterations;
                        JButton iterationsOK, iterationsCancel;
                        iterationsDialog = new JDialog(modifyFFNDialog, "Set Iterations");
                        iterationsDialog.setSize(765, 75);
                        iterationsDialog.setLayout(new GridLayout(2, 2));
                        numberOfIterationsLabel = new JLabel("How Many Iterations do you want to Train?");
                        numberOfIterations = new JFormattedTextField(
                                new NumberFormatter(NumberFormat.getIntegerInstance()));
                        iterationsOK = new JButton("OK");
                        iterationsCancel = new JButton("Cancel");
                        iterationsDialog.add(numberOfIterationsLabel);
                        iterationsDialog.add(numberOfIterations);
                        iterationsDialog.add(iterationsOK);
                        iterationsDialog.add(iterationsCancel);
                        iterationsOK.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                if (!numberOfIterations.getText().equals("")) {
                                    iterationsDialog.setVisible(false);
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .setIterations(Integer.parseInt(numberOfIterations.getText()))) {
                                        settings.setText("");
                                        settings.append("\n\n\n\nLearning Rate: "
                                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                                        settings.append("\n\nMomentum: "
                                                + net.get(resultsPane.getSelectedIndex()).getMomentum());
                                        settings.append("\n\nTraining Style: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                                            settings.append("batch");
                                            batchOn.setSelected(true);
                                        } else {
                                            settings.append("online");
                                            onlineOn.setSelected(true);
                                        }
                                        settings.append("\n\nTraining End Condition: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                                            settings.append("Iterative");
                                            settings.append("\n\nIterations: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                                        } else {
                                            settings.append("Ideal Error");
                                            settings.append("\n\nIdeal Error: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                                        }
                                        modifyFFNDialog.setVisible(true);
                                    } else {
                                        JOptionPane.showMessageDialog(modifyFFNDialog,
                                                "Invalid Number of Iterations", "Math Error",
                                                JOptionPane.ERROR_MESSAGE);
                                    }
                                } else {
                                    JOptionPane.showMessageDialog(iterationsDialog, "Field not filled out",
                                            "Form Error", JOptionPane.ERROR_MESSAGE);
                                }
                            }
                        });
                        iterationsCancel.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                iterationsDialog.setVisible(false);
                            }
                        });
                        iterationsDialog.setVisible(true);
                    }
                });

                modifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (!learningRateTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                            learningRateTF.setText("");
                        }
                        if (!momentumTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                            momentumTF.setText("");
                        }
                        if (batchOn.isSelected()) {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(true);
                        } else {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(false);
                        }

                        modifyFFNDialog.setVisible(false);
                    }
                });

                learningRateTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (learningRateTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");

                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                momentumTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (momentumTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");
                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                cancelModifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifyFFNDialog.setVisible(false);
                    }
                });
                modifyFFNDialog.setVisible(true);
            }
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                modifySOMDialog = new JDialog(mainWindow, "Network Settings", true);
                modifySOMDialog.setSize(500, 400);
                modifySOMDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifySOMDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                mIterationL = new JLabel("Set Number of Iterations:");
                modifySOMDialog.add(mIterationL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mIterationTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
                mIterationTF.setText("");
                modifySOMDialog.add(mIterationTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                mLRL = new JLabel("Set Learning Rate (0-1):");
                modifySOMDialog.add(mLRL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mLRTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mLRTF.setText("");
                modifySOMDialog.add(mLRTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 5;
                mMaxL = new JLabel("Set Data Maximum:");
                modifySOMDialog.add(mMaxL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 6;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMaxTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMaxTF.setText("");
                modifySOMDialog.add(mMaxTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 7;
                mMinL = new JLabel("Set Data Minimum:");
                modifySOMDialog.add(mMinL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMinTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMinTF.setText("");
                modifySOMDialog.add(mMinTF, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifySOM = new JButton("OK");
                modifySOMDialog.add(modifySOM, asdf);
                asdf.gridx = 7;
                cancelModifySOM = new JButton("Cancel");
                modifySOMDialog.add(cancelModifySOM, asdf);
                settings.setText("");
                settings.append("\n\nNumber of Iterations: "
                        + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                settings.append(
                        "\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nData Maximum: " + net.get(resultsPane.getSelectedIndex()).getDataMax());
                settings.append("\n\nData Minimum: " + net.get(resultsPane.getSelectedIndex()).getDataMin());

                mIterationTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (mIterationTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        }
                    }
                });

                mLRTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mLRTF.getText() != "") && ((Double.parseDouble(mLRTF.getText())) <= 1.0)) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(mLRTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mLRTF, "Pick a number from 0 - 1", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                            mLRTF.setText("");
                        }
                    }
                });

                mMaxTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMaxTF.getText() != "") && (((Double.parseDouble(mMaxTF.getText())) > net
                                .get(resultsPane.getSelectedIndex()).getDataMin()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMax(Double.parseDouble(mMaxTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMaxTF, "Max value must be greater than Min value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMaxTF.setText("");
                        }
                    }
                });

                mMinTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMinTF.getText() != "") && ((Double.parseDouble(mMinTF.getText())) < net
                                .get(resultsPane.getSelectedIndex()).getDataMax())) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMin(Double.parseDouble(mMinTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMinTF, "Min value must be less than Max value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMinTF.setText("");
                        }
                    }
                });

                modifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        boolean error = false;
                        if (!("".equals(mIterationTF.getText()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));
                        }
                        if (!("".equals(mLRTF.getText()))) {
                            if ((Double.parseDouble(mLRTF.getText())) > 1.0) {
                                error = true;
                                mLRTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setLearningRate(Double.parseDouble(mLRTF.getText()));
                        }
                        if (!("".equals(mMaxTF.getText()))) {
                            if (((Double.parseDouble(mMaxTF.getText())) < net
                                    .get(resultsPane.getSelectedIndex()).getDataMin())) {
                                error = true;
                                mMaxTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMax(Double.parseDouble(mMaxTF.getText()));
                        }
                        if (!("".equals(mMinTF.getText()))) {
                            if ((Double.parseDouble(mMinTF.getText())) > net.get(resultsPane.getSelectedIndex())
                                    .getDataMax()) {
                                error = true;
                                mMinTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMin(Double.parseDouble(mMinTF.getText()));
                        }

                        if (error == true) {
                            JOptionPane.showMessageDialog(modifySOMDialog,
                                    "One or more fields have incorrect values", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                        } else {
                            modifySOMDialog.setVisible(false);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                            printInitMap();
                        }

                    }
                });

                cancelModifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifySOMDialog.setVisible(false);
                    }
                });

                modifySOMDialog.setVisible(true);
            }
        }

    });

    modify.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : changeConfig.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //The following code is for the newNet button under file:

    //create a dialog to be activated when "New Network" is pressed in the file menu
    newDialog = new JDialog(mainWindow, "New Network", true);
    newDialog.setSize(375, 100);
    newDialog.setLayout(new GridLayout(3, 2)); //going to change the layout to GridBagLayout for better customization

    name = new JLabel("Network Name:");
    newName = new JTextField(10);
    type = new JLabel("Type of Network:");
    netTypes = new String[] { "Feed Forward Network", "Self-Organizing Map" };
    netType = new JComboBox<String>(netTypes);
    netType.setSelectedItem("Feed Forward Network");
    createNewNet = new JButton("create");
    cancelNew = new JButton("cancel");
    newDialog.add(name);
    newDialog.add(newName);
    newDialog.add(type);
    newDialog.add(netType);
    newDialog.add(createNewNet);
    newDialog.add(cancelNew);

    //utilities for a second dialog(Feed Forward Network) in the process of creating a new network   
    number = new JLabel("Enter the number of layers you want for your network:");
    howManyLayers = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFNArchitecture = new JButton("OK");
    cancelFFN = new JButton("Cancel");

    howManyNodes = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFN = new JButton("OK");
    cancelNodes = new JButton("Cancel");

    //Written by Michael Scott
    somLattice = new JLabel("   Lattice number for your Map:");
    somLatticeField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somLatticeField.setFocusLostBehavior(1);
    somMax = new JLabel("   Maximum value of your input (if known):");
    somMaxField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMaxField.setFocusLostBehavior(1);
    somMin = new JLabel("   Minimum value of your input (if known):");
    somMinField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMinField.setFocusLostBehavior(1);
    somDim = new JLabel("   Node Dimensions:");
    somDimField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somDimField.setFocusLostBehavior(1);
    createSOM = new JButton("OK");
    cancelSOM = new JButton("Cancel");

    //displays the newDialog window when newNet is pressed
    newNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            newDialog.setVisible(true);
        }
    });

    newwer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(true);
        }
    });

    //makes hitting enter in the text box do the same thing as clicking "create"
    newName.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createNewNet.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //when create net is pressed, this reads the selections from the newNet dialog and creates the approriate next dialog
    createNewNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int test;
            test = 0;
            for (StringBuffer names : netName) {
                if (names.toString().equals(newName.getText()))
                    test = 1;
            }
            if (test == 0)
                if (!newName.getText().equals("")) {
                    if (netType.getSelectedIndex() == 0) { //if the net selected is Feed Forward, create and display the prompt for a feed forward network
                        newDialog.setVisible(false);
                        fFNDialog = new JDialog(mainWindow, newName.getText(), true);
                        fFNDialog.setSize(919, 65);
                        fFNDialog.setLayout(new GridLayout(2, 2));
                        fFNDialog.add(number);
                        fFNDialog.add(howManyLayers);
                        fFNDialog.add(createFFNArchitecture);
                        fFNDialog.add(cancelFFN);
                        fFNDialog.setVisible(true);
                    }
                    //Written by Michael Scott
                    if (netType.getSelectedIndex() == 1) {
                        newDialog.setVisible(false);
                        sOMDialog = new JDialog(mainWindow, newName.getText(), true);
                        sOMDialog.setSize(500, 180);
                        sOMDialog.setLayout(new GridLayout(5, 2));
                        sOMDialog.add(somLattice);
                        sOMDialog.add(somLatticeField);
                        sOMDialog.add(somDim);
                        sOMDialog.add(somDimField);
                        sOMDialog.add(somMax);
                        sOMDialog.add(somMaxField);
                        sOMDialog.add(somMin);
                        sOMDialog.add(somMinField);
                        sOMDialog.add(createSOM);
                        sOMDialog.add(cancelSOM);
                        sOMDialog.setVisible(true);

                    }
                } else
                    JOptionPane.showMessageDialog(createNewNet, "Network must have a Name",
                            "Namelessness Error", JOptionPane.ERROR_MESSAGE);
            else {
                JOptionPane.showMessageDialog(createNewNet, "Network " + newName.getText() + " already exists",
                        "Existential Naming Error", JOptionPane.ERROR_MESSAGE);
                newName.setText("");
            }
        }

    });
    //beginning of section about creating Feed Forward Networks   
    //cancel clears the name field and hides the newDialog dialog
    cancelNew.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(false);
            newName.setText("");
        }
    });

    //makes hitting enter the same as clicking "ok"
    howManyLayers.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFNArchitecture.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //create a prompt for the first layer to determine how many nodes will go into the first layer
    createFFNArchitecture.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyLayers.getText().equals("")
                    && (layers = Integer.parseInt(howManyLayers.getText())) > 1) {
                nodeConfiguration = new int[layers]; //create an array to hold the node configuration that will be passed to the Net constructor
                layer = 1; //create a variable to hold the current layer the prompt series is on
                numberofNodes = new JLabel("How many nodes do you want in layer " + layer + "?");
                fFNDialog.setVisible(false);
                howManyNodesDialog = new JDialog(mainWindow, newName.getText(), true);
                howManyNodesDialog.setSize(919, 65);
                howManyNodesDialog.setLayout(new GridLayout(2, 2));
                howManyNodesDialog.add(numberofNodes);
                howManyNodesDialog.add(howManyNodes);
                howManyNodesDialog.add(createFFN);
                howManyNodesDialog.add(cancelNodes);
                howManyNodesDialog.setVisible(true);
            } else {
                //if the string is not valid, pop up an error message
                JOptionPane.showMessageDialog(fFNDialog,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 1</html>",
                        "Out of Bounds", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //runs each time ok is pressed, until all the layers have a vaule for the number of nodes in the layer
    createFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyNodes.getText().equals("")
                    && (nodeConfiguration[layer - 1] = Integer.parseInt(howManyNodes.getText())) > 0) {
                if (layer == layers) {
                    try {
                        //adds a close button to the top corner of each tab
                        title.add(new JLabel(newName.getText() + " "));
                        close.add(new JButton("X"));
                        close.get(openNets).setActionCommand(newName.getText());
                        close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                        close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                        tabPanel.add(new JPanel(new GridBagLayout()));
                        tabPanel.get(openNets).setOpaque(false);
                        GridBagConstraints grid = new GridBagConstraints();
                        grid.fill = GridBagConstraints.HORIZONTAL;
                        grid.gridx = 0;
                        grid.gridy = 0;
                        grid.weightx = 1;
                        tabPanel.get(openNets).add(title.get(openNets), grid);
                        grid.gridx = 1;
                        grid.gridy = 0;
                        grid.weightx = 0;
                        tabPanel.get(openNets).add(close.get(openNets), grid);

                        //adds a loading bar
                        loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                        loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                        loadingBar.get(openNets).setVisible(false);
                        //creates and sets the network configuration
                        net.add(new FullyConnectedFeedForwardNet(nodeConfiguration));

                        netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                        netName.add(new StringBuffer(newName.getText()));
                        oneNet.add(new JPanel());
                        oneNet.get(openNets).setLayout(new GridBagLayout());
                        GridBagConstraints constraints = new GridBagConstraints();
                        constraints.fill = GridBagConstraints.BOTH;

                        //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                        readOut.add(new JTextArea(""));
                        readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                        readOut.get(openNets).setEditable(false);
                        constraints.gridx = 0;
                        constraints.gridy = 0;
                        constraints.weighty = 1.0;
                        constraints.weightx = 1.0;
                        constraints.gridwidth = 2;
                        constraints.ipady = 90;
                        oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                        constraints.fill = GridBagConstraints.HORIZONTAL;
                        constraints.gridx = 0;
                        constraints.gridy = 1;
                        constraints.ipady = 0;
                        constraints.gridwidth = 2;
                        constraints.anchor = GridBagConstraints.PAGE_END;

                        //add everythign to the tabbed pane
                        oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                        resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                        resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                        path.add("");

                        //display the starting configuration of the network
                        readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                        resultsPane.setSelectedIndex(openNets++);
                        printConnections();

                        //erases all the text in the setup fields and closes the window
                        howManyNodes.setValue(null);
                        howManyLayers.setText("");
                        newName.setText("");
                        howManyNodesDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createFFN,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (OutOfMemoryError e) {
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                                "Memory Error", JOptionPane.ERROR_MESSAGE);
                    }
                } else {
                    layer++;
                    howManyNodes.setText("");
                    numberofNodes.setText("How many nodes do you want in layer " + layer + "?");
                }

            } else {
                JOptionPane.showMessageDialog(createFFN,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 0", "Out of Bounds",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //makes hitting enter in text box the same as clicking ok
    howManyNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFN.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //cancels the node prompt
    cancelNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            howManyNodes.setText("");
            howManyNodesDialog.setVisible(false);
        }
    });

    //cancel clears both name fields so far filled in the series of dialogs and hides the dialog
    cancelFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            fFNDialog.setVisible(false);
        }
    });
    //end of section about creating FFNs
    //end of section about newNet   

    //Method to create a SOM
    createSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (somLatticeField.getText().equals("") || somDimField.getText().equals("")) {
                JOptionPane.showMessageDialog(createSOM, "<html>Empty Field<br>Please Fill All Fields",
                        "Empty Field", JOptionPane.ERROR_MESSAGE);
            } else {
                if (somMaxField.getText().equals(""))
                    somMaxField.setText("100");
                if (somMinField.getText().equals(""))
                    somMinField.setText("0");
                if (Double.parseDouble(somMaxField.getText().replace(",", "")) < Double
                        .parseDouble(somMinField.getText().replace(",", ""))) {
                    JOptionPane.showMessageDialog(createSOM, "MIN GREATER THAN MAX!!!!", "Stupidity Error",
                            JOptionPane.ERROR_MESSAGE);
                }

                try {
                    //adds a close button to the top corner of each tab
                    title.add(new JLabel(newName.getText() + " "));
                    close.add(new JButton("X"));
                    close.get(openNets).setActionCommand(newName.getText());
                    close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                    close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                    tabPanel.add(new JPanel(new GridBagLayout()));
                    tabPanel.get(openNets).setOpaque(false);
                    GridBagConstraints grid = new GridBagConstraints();
                    grid.fill = GridBagConstraints.HORIZONTAL;
                    grid.gridx = 0;
                    grid.gridy = 0;
                    grid.weightx = 1;
                    tabPanel.get(openNets).add(title.get(openNets), grid);
                    grid.gridx = 1;
                    grid.gridy = 0;
                    grid.weightx = 0;
                    tabPanel.get(openNets).add(close.get(openNets), grid);

                    //adds a loading bar
                    loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                    loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                    loadingBar.get(openNets).setVisible(false);
                    //creates and sets the network configuration
                    net.add(new SelfOrganizingMap());

                    netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                    netName.add(new StringBuffer(newName.getText()));
                    oneNet.add(new JPanel());
                    oneNet.get(openNets).setLayout(new GridBagLayout());
                    GridBagConstraints constraints = new GridBagConstraints();
                    constraints.fill = GridBagConstraints.BOTH;

                    //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                    readOut.add(new JTextArea(""));
                    readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                    readOut.get(openNets).setEditable(false);
                    constraints.gridx = 0;
                    constraints.gridy = 0;
                    constraints.weighty = 1.0;
                    constraints.weightx = 1.0;
                    constraints.gridwidth = 2;
                    constraints.ipady = 90;
                    oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                    constraints.fill = GridBagConstraints.HORIZONTAL;
                    constraints.gridx = 0;
                    constraints.gridy = 1;
                    constraints.ipady = 0;
                    constraints.gridwidth = 2;
                    constraints.anchor = GridBagConstraints.PAGE_END;

                    //add everythign to the tabbed pane
                    oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                    resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                    resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                    path.add("");

                    //display the starting configuration of the network
                    readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                    resultsPane.setSelectedIndex(openNets++);
                    try {
                        net.get(resultsPane.getSelectedIndex())
                                .setLatticeValue(Integer.parseInt(somLatticeField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMax(Double.parseDouble(somMaxField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMin(Double.parseDouble(somMinField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setInputDimensions(Integer.parseInt(somDimField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex()).runNet();
                        readOut.get(resultsPane.getSelectedIndex()).append("Initial Untrained Map:\n");
                        printInitMap();

                        if (!getColorMap.isVisible()) {
                            util.addSeparator();
                            util.add(getColorMap);
                            getColorMap.setVisible(true);
                        }

                        //erases all the text in the setup fields and closes the window
                        newName.setText("");
                        somLatticeField.setText("");
                        somDimField.setText("");
                        somMaxField.setText("");
                        somMinField.setText("");
                        sOMDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createSOM,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (Exception e) {
                        net.remove(resultsPane.getSelectedIndex());
                        oneNet.remove(resultsPane.getSelectedIndex());
                        readOutLocale.remove(resultsPane.getSelectedIndex());
                        readOut.remove(resultsPane.getSelectedIndex());
                        loadingBar.remove(resultsPane.getSelectedIndex());
                        tabPanel.remove(resultsPane.getSelectedIndex());
                        title.remove(resultsPane.getSelectedIndex());
                        close.remove(resultsPane.getSelectedIndex());
                        netName.remove(resultsPane.getSelectedIndex());
                        resultsPane.remove(resultsPane.getSelectedIndex());
                        openNets--;
                        JOptionPane.showMessageDialog(sOMDialog, "Numbers too large to parse", "Parse error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                } catch (OutOfMemoryError e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                            "Memory Error", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    cancelSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            somLatticeField.setText("");
            somMaxField.setText("");
            somMinField.setText("");
            sOMDialog.setVisible(false);
        }
    });

    //end of SOM creation
    mainWindow.setVisible(true);
}