Example usage for javax.swing JFormattedTextField JFormattedTextField

List of usage examples for javax.swing JFormattedTextField JFormattedTextField

Introduction

In this page you can find the example usage for javax.swing JFormattedTextField JFormattedTextField.

Prototype

public JFormattedTextField(AbstractFormatterFactory factory) 

Source Link

Document

Creates a JFormattedTextField with the specified AbstractFormatterFactory.

Usage

From source file:net.jradius.client.gui.JRadiusSimulator.java

/**
 * This method initializes sessionTimeTextField  
 *  // ww w  .ja v  a2 s  .c o  m
 * @return javax.swing.JTextField   
 */
private JFormattedTextField getSessionTimeTextField() {
    if (sessionTimeTextField == null) {
        sessionTimeTextField = new JFormattedTextField(getNumberFormatter());
        sessionTimeTextField.setValue(new Integer(60));
    }
    return sessionTimeTextField;
}

From source file:display.ANNFileFilter.java

License:asdf

Yanng() {
    JPanel toolBars;//from   w  ww  .ja  v a 2  s. c  o  m
    JMenuBar menuBar;
    JToolBar utilBar, fileBar;
    JButton toJava, runner, trainer, modify, getTraininger, inputer, newwer, saver, saveAser, loader, helper;
    JMenu file;
    final JMenu util;
    JMenu help;

    ImageIcon IJava, IRun, ITrain, IModify, INew, ISave, ILoad, IGetTrainingSet, IGetInput, ISaveAs;

    //initialize main window
    mainWindow = new JFrame("YANNG - Yet Another Neural Network (simulator) Generator");
    mainWindow.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
    mainWindow.setLayout(new BorderLayout());
    mainWindow.setSize(675, 525);
    mainWindow.setIconImage(new ImageIcon(ClassLoader.getSystemResource("display/icons/logo.png")).getImage());
    loadingImage = new ImageIcon(ClassLoader.getSystemResource("display/icons/loading.gif"));

    path = new Vector<String>();
    net = new Vector<NeuralNetwork>();
    oneNet = new Vector<JPanel>();
    tabPanel = new Vector<JPanel>();
    readOut = new Vector<JTextArea>();
    readOutLocale = new Vector<JScrollPane>();
    loadingBar = new Vector<JLabel>();
    title = new Vector<JLabel>();
    close = new Vector<JButton>();
    netName = new Vector<StringBuffer>();
    netKind = new Vector<StringBuffer>();

    resultsPane = new JTabbedPane();

    mainWindow.add(resultsPane);

    toolBars = new JPanel();
    toolBars.setLayout(new FlowLayout(FlowLayout.LEFT));

    //create utilities toolbar with 3 buttons
    utilBar = new JToolBar("Utilities");
    IRun = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/running.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ITrain = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/training.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IModify = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/modifyNet.png"))
            .getImage().getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetTrainingSet = new ImageIcon(
            new ImageIcon(ClassLoader.getSystemResource("display/icons/trainingSet.png")).getImage()
                    .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetInput = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/input.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    //set the icons/tooltips for the utilitiy bar    
    runner = new JButton(IRun);
    runner.setToolTipText(
            "<html>Run  the  Current  Neural   Network<br>Once Through with the Current Input</html>");

    trainer = new JButton(ITrain);
    trainer.setToolTipText(
            "<html>Train the Network with the Current<br>Configuration  and  Training  Set</html>");

    modify = new JButton(IModify);
    modify.setToolTipText("<html>Modify the Network<br>for Fun and Profit</html>");

    getTraininger = new JButton(IGetTrainingSet);
    getTraininger.setToolTipText("Get Training Set from File");

    inputer = new JButton(IGetInput);
    inputer.setToolTipText("Get Input Set from File");

    utilBar.add(inputer);
    utilBar.add(runner);
    utilBar.add(getTraininger);
    utilBar.add(trainer);
    utilBar.add(modify);

    //create file toolbar
    fileBar = new JToolBar("file");
    ISaveAs = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/saveAs.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    INew = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/new.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ISave = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/save.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ILoad = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/load.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IJava = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/toJava.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));

    newwer = new JButton(INew);
    newwer.setToolTipText("Create New Neural Network");

    saver = new JButton(ISave);
    saver.setToolTipText("Save Current Network Configuration");

    saveAser = new JButton(ISaveAs);
    saveAser.setToolTipText("Save Network As");

    loader = new JButton(ILoad);
    loader.setToolTipText("Load Network Configuration from File");

    toJava = new JButton(IJava);
    toJava.setToolTipText("Export Network to Java Project");

    fileBar.add(newwer);
    fileBar.add(loader);
    fileBar.add(saver);
    fileBar.add(saveAser);
    fileBar.add(toJava);
    toolBars.add(fileBar);
    toolBars.add(utilBar);
    mainWindow.add(toolBars, BorderLayout.NORTH);

    //create a menubar with three menus on it
    menuBar = new JMenuBar();
    file = new JMenu("File");
    util = new JMenu("Utilities");
    help = new JMenu("Help");

    //add menu items for file menu
    load = new JMenuItem("Load Network Configuration");
    newNet = new JMenuItem("New Network");
    saveAs = new JMenuItem("Save Network As");
    save = new JMenuItem("Save Current Configuration");
    exportNet = new JMenuItem("Export Network to Java Project");
    exportOutput = new JMenuItem("Export Output to Text File");
    file.add(load);
    file.add(newNet);
    file.addSeparator();
    file.add(saveAs);
    file.add(save);
    file.addSeparator();
    file.add(exportNet);
    file.add(exportOutput);
    menuBar.add(file);

    //add menu items for utilities menu
    changeConfig = new JMenuItem("Modify Network Settings");
    getInput = new JMenuItem("Get Input From File");
    getTraining = new JMenuItem("Get Training Set From File");
    run = new JMenuItem("Run");
    train = new JMenuItem("Train");
    getColorMap = new JMenuItem("View Color Map");
    getColorMap.setVisible(false);
    util.add(changeConfig);
    util.addSeparator();
    util.add(getInput);
    util.add(getTraining);
    util.addSeparator();
    util.add(run);
    util.add(train);
    menuBar.add(util);

    //add menu items for help menu
    quickStart = new JMenuItem("Quick Start Guide");
    searchHelp = new JMenuItem("Programming with Yanng");
    about = new JMenuItem("License");
    links = new JMenuItem("<html>Links to Resources<br>about Neural Networks</html>");
    help.add(quickStart);
    help.addSeparator();
    help.add(searchHelp);
    help.addSeparator();
    help.add(about);
    help.addSeparator();
    help.add(links);
    menuBar.add(help);

    mainWindow.setJMenuBar(menuBar);

    //opens the quickstart guide
    quickStart.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/quick-start.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/quick-start.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/quick-start.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    links.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(
                        URLDecoder.decode(ClassLoader.getSystemResource("ann/links.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/links.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/links.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //Displays license information
    about.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            JTextArea x = new JTextArea("Copyright [2015] [Sam Findler and Michael Scott]\n" + "\n"
                    + "Licensed under the Apache License, Version 2.0 (the \"License\");\n"
                    + "you may not use this file except in compliance with the License.\n"
                    + "You may obtain a copy of the License at\n" + "\n"
                    + "http://www.apache.org/licenses/LICENSE-2.0\n" + "\n"
                    + "Unless required by applicable law or agreed to in writing, software\n"
                    + "distributed under the License is distributed on an \"AS IS\" BASIS,\n"
                    + "WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n"
                    + "See the License for the specific language governing permissions and\n"
                    + "limitations under the License.");
            JDialog aboutDialog = new JDialog(mainWindow, "License", true);
            aboutDialog.setSize(500, 250);
            aboutDialog.setLayout(new FlowLayout());
            aboutDialog.add(x);
            x.setEditable(false);
            aboutDialog.setVisible(true);
        }
    });

    //opens the more technical user guide
    searchHelp.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/technical-manual.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/technical-manual.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/technical-manual.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });
    //class trains the neural network in the background while the loading bar displays, then prints out the output/connections listings/average error to the readOut pane
    class Trainer extends SwingWorker<NeuralNetwork, Object> {
        protected NeuralNetwork doInBackground() {
            net.get(resultsPane.getSelectedIndex()).trainNet();
            setProgress(1);
            return net.get(resultsPane.getSelectedIndex());
        }

        public void done() {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                    JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                            "Formatting Error", JOptionPane.ERROR_MESSAGE);
                else {
                    printConnections();
                    readOut.get(resultsPane.getSelectedIndex()).append(
                            "Results of Training " + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                    printOutput();
                    readOut.get(resultsPane.getSelectedIndex()).append("Average Error = "
                            + net.get(resultsPane.getSelectedIndex()).getAverageError() + "\n\n");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                printInitMap();
                loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                JOptionPane.showMessageDialog(mainWindow,
                        "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
            }
        }

    }
    //starts the training class when train is pressed in the utilities menu
    train.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            if (resultsPane.getTabCount() != 0) {
                if (net.get(resultsPane.getSelectedIndex()).getTrainingSet() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            }

            else
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });
    //associates the toolbar button with the jump rope guy with the training button on the utilities menu
    trainer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : train.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //runs through one set of inputs and prints the results to the readOut pane  
    run.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputSet() != null) {
                    net.get(resultsPane.getSelectedIndex()).runNet();
                    if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                        JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    else {
                        readOut.get(resultsPane.getSelectedIndex()).append("Results of Running through Network "
                                + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                        printOutput();
                        System.out.println("Results:");
                        for (int i = 0; i < net.get(resultsPane.getSelectedIndex())
                                .getOutputSet().length; i++) {
                            System.out.println("\n   Output of Input Vector " + i + ":");
                            for (int j = 0; j < net.get(resultsPane.getSelectedIndex())
                                    .getOutputSet()[i].length; j++) {
                                System.out.println("      Output Node " + j + " = "
                                        + net.get(resultsPane.getSelectedIndex()).getOutputSet()[i][j]);
                            }
                        }
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                    }
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputValues() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else
                JOptionPane.showMessageDialog(mainWindow, "Can't Run Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });

    runner.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : run.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //the following code is for the getTraining button under utilities
    getTrainingSet = new JFileChooser();
    getTrainingSet.setFileFilter(new TrainingFileFilter());

    getTraining.addActionListener(new ActionListener() {
        //this method/class gets a training set (tsv/csv file) and parse it through the neural network.  Kind of test that the file is formatted correctly, but if the data is wrong, there isn't much it can do.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile()))
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                        else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                            printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    getTraininger.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getTraining.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //this ends the getTraining section of the code   

    getInput.addActionListener(new ActionListener() {
        //this method/class gets an input set (tsv/csv file) and parses it through the neural network.  Somewhat tests that the file is formatted correctly, but cannot give a garuntee.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseInputSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map"))
                                printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                else
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't train nonexistent network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //opens and displays a color map of a SOM
    getColorMap.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                    MapNode[][] map;

                    map = net.get(resultsPane.getSelectedIndex()).getMapArray();

                    int lValue = net.get(resultsPane.getSelectedIndex()).getLatticeValue();

                    int inputDimensions = net.get(resultsPane.getSelectedIndex()).getInputDimensions();

                    int[][] colorValues = new int[(lValue * lValue)][3];

                    double dMax = net.get(resultsPane.getSelectedIndex()).getDataMax();
                    double dMin = net.get(resultsPane.getSelectedIndex()).getDataMin();

                    int count = 0;

                    for (int i = 0; i < lValue; i++) {
                        for (int j = 0; j < lValue; j++) {
                            for (int k = 0; k < 3; k++) {
                                Vector tempVec = map[i][j].getWeights();
                                if (inputDimensions % 3 == 0) {
                                    colorValues[count][k] = Integer.parseInt(String.valueOf((Math.round(255
                                            * (Double.parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                                if (inputDimensions % 3 == 1) {
                                    if (k == 0)
                                        colorValues[count][k] = 0;
                                    if (k == 1) {
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(0))))))));
                                    }
                                    if (k == 2)
                                        colorValues[count][k] = 0;
                                }
                                if (inputDimensions % 3 == 2) {
                                    if (k == 2) {
                                        colorValues[count][k] = 0;
                                    } else
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                            }
                            count++;
                        }
                    }

                    JFrame frame = new JFrame();

                    frame.setTitle("Color Map");
                    frame.setPreferredSize(new Dimension(525, 500));
                    frame.add(new DrawPanel(colorValues, lValue));
                    frame.pack();
                    frame.setVisible(true);
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow,
                            "This Feauture is only available for Self-Organizing Maps", "Not a Som Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Network does not exist", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    inputer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getInput.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    getNet = new JFileChooser();
    getNet.setFileFilter(new ANNFileFilter());

    //saves the net, or opens save as dialog if net is not saved yet
    save.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (!path.get(resultsPane.getSelectedIndex()).equals("")) {
                    net.get(resultsPane.getSelectedIndex())
                            .save(new File(path.get(resultsPane.getSelectedIndex())));
                }

                else {
                    for (ActionListener a : saveAs.getActionListeners()) {
                        a.actionPerformed(ae);
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't save NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saver.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : save.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //opens dialog for saving the net
    saveAs.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result, override;
                String tempName;
                result = getNet.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if ((new File(tempName = getNet.getSelectedFile().getName())).exists()
                            || (new File(tempName + ".ffn")).exists() || (new File(tempName + ".som")).exists()
                            || (new File(tempName + ".hfn")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                tempName + " already exists, do you want to override?", "File Exists",
                                JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                                if (tempName.endsWith(".ffn") || tempName.endsWith(".som")) {
                                    netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".ffn"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".som"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                }
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());

                            } else
                                JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                        JOptionPane.ERROR_MESSAGE);
                        }
                    } else {
                        if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                            if (tempName.endsWith(".ffn") || tempName.endsWith(".som")
                                    || tempName.endsWith(".hfn")) {
                                netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".ffn"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".som"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());
                            }
                        } else
                            JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                    JOptionPane.ERROR_MESSAGE);
                    }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Save", "Existetial Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saveAser.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : saveAs.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //loads a net
    load.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result;
            boolean test = true;
            String tempName;
            result = getNet.showOpenDialog(mainWindow);
            if (result == JFileChooser.APPROVE_OPTION) {
                tempName = getNet.getSelectedFile().getName();
                for (StringBuffer names : netName) {
                    if (names.toString().equals(tempName))
                        test = false;
                }
                if (test != false) {
                    //creates and sets the network configuration
                    if (tempName.endsWith(".ffn")) {
                        net.add(new FullyConnectedFeedForwardNet());
                    }
                    if (tempName.endsWith(".som")) {
                        net.add(new SelfOrganizingMap());
                    }
                    if (net.get(openNets).load(getNet.getSelectedFile()))
                        try {
                            //adds a close button to the top corner of each tab
                            title.add(new JLabel(tempName + " "));
                            close.add(new JButton("X"));
                            close.get(openNets).setActionCommand(tempName);
                            close.get(openNets)
                                    .setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                            close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                            tabPanel.add(new JPanel(new GridBagLayout()));
                            tabPanel.get(openNets).setOpaque(false);
                            GridBagConstraints grid = new GridBagConstraints();
                            grid.fill = GridBagConstraints.HORIZONTAL;
                            grid.gridx = 0;
                            grid.gridy = 0;
                            grid.weightx = 1;
                            tabPanel.get(openNets).add(title.get(openNets), grid);
                            grid.gridx = 1;
                            grid.gridy = 0;
                            grid.weightx = 0;
                            tabPanel.get(openNets).add(close.get(openNets), grid);

                            //adds a loading bar
                            loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                            loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                            loadingBar.get(openNets).setVisible(false);

                            path.add(getNet.getSelectedFile().getPath());

                            netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                            netName.add(new StringBuffer(tempName));
                            oneNet.add(new JPanel());
                            oneNet.get(openNets).setLayout(new GridBagLayout());
                            GridBagConstraints constraints = new GridBagConstraints();
                            constraints.fill = GridBagConstraints.BOTH;

                            //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                            readOut.add(new JTextArea(""));
                            readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                            readOut.get(openNets).setEditable(false);
                            constraints.gridx = 0;
                            constraints.gridy = 0;
                            constraints.weighty = 1.0;
                            constraints.weightx = 1.0;
                            constraints.gridwidth = 2;
                            constraints.ipady = 90;
                            oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                            constraints.fill = GridBagConstraints.HORIZONTAL;
                            constraints.gridx = 0;
                            constraints.gridy = 1;
                            constraints.ipady = 0;
                            constraints.gridwidth = 2;
                            constraints.anchor = GridBagConstraints.PAGE_END;

                            //add everythign to the tabbed pane
                            oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                            resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                            resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                            //display the starting configuration of the network
                            readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                            resultsPane.setSelectedIndex(openNets++);
                            if (tempName.endsWith(".ffn"))
                                printConnections();
                            if (tempName.endsWith(".som")) {
                                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                                printInitMap();
                            }

                            //unfortunately difficult way that I made to add the close button functionality to close a tab
                            //it works, but there has to be a better way to do this
                            close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                                public void actionPerformed(final ActionEvent ae) {
                                    int result;
                                    result = 0;
                                    for (StringBuffer names : netName) {
                                        if (ae.getActionCommand().equals(names.toString())) {
                                            result = JOptionPane.showConfirmDialog(createFFN,
                                                    "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                    "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                            resultsPane.setSelectedIndex(netName.indexOf(names));
                                        }
                                    }
                                    if (result == JOptionPane.OK_OPTION) {
                                        net.remove(resultsPane.getSelectedIndex());
                                        oneNet.remove(resultsPane.getSelectedIndex());
                                        readOutLocale.remove(resultsPane.getSelectedIndex());
                                        readOut.remove(resultsPane.getSelectedIndex());
                                        loadingBar.remove(resultsPane.getSelectedIndex());
                                        tabPanel.remove(resultsPane.getSelectedIndex());
                                        title.remove(resultsPane.getSelectedIndex());
                                        close.remove(resultsPane.getSelectedIndex());
                                        netName.remove(resultsPane.getSelectedIndex());
                                        resultsPane.remove(resultsPane.getSelectedIndex());
                                        openNets--;
                                    }
                                }
                            });
                        } catch (Error e) {
                            JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                    "Formatting Error", JOptionPane.ERROR_MESSAGE);
                        }
                    else {
                        //if file was unable to load, remove the newly created neural network and display an error message
                        net.remove(openNets);
                        JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    }
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow, "File Already Open", "Duality Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //associates the load toolbar button with load from the file menu
    loader.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : load.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    textFileChooser = new JFileChooser();
    textFileChooser.setFileFilter(new TextFileFilter());

    //exports all text from readout to a text file
    exportOutput.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = textFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    if (textFileChooser.getSelectedFile().exists()
                            || (new File(textFileChooser.getSelectedFile().getPath() + ".txt")).exists()) {
                        result = JOptionPane.showConfirmDialog(mainWindow,
                                "The File you have selected already Exists, do you want to Overwrite it?",
                                "File Exits", JOptionPane.YES_NO_OPTION);
                        if (result == JOptionPane.YES_OPTION) {
                            try {
                                if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                    FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                else
                                    FileUtils.writeStringToFile(
                                            new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                            } catch (Exception e) {
                                JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                        JOptionPane.ERROR_MESSAGE);
                            }
                        }
                    } else {
                        try {
                            if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            else
                                FileUtils.writeStringToFile(
                                        new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                        } catch (Exception e) {
                            JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                    JOptionPane.ERROR_MESSAGE);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Export", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    projectFileChooser = new JFileChooser();
    projectFileChooser.setFileFilter(new ProjectFileFilter());

    //exports a neural network to a java/android project
    exportNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result, override, override2;
            String tempName;
            String templateFile;
            String directory;
            String path;
            if (resultsPane.getTabCount() != 0) {
                result = projectFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    path = projectFileChooser.getSelectedFile().getPath();
                    directory = projectFileChooser.getSelectedFile().getPath().substring(0,
                            projectFileChooser.getSelectedFile().getPath().lastIndexOf(File.separator));
                    tempName = projectFileChooser.getSelectedFile().getName();
                    if (projectFileChooser.getSelectedFile().exists()
                            || (new File(directory, tempName + ".java")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                "Java Class File" + tempName + " already exists, do you want to overwrite it?",
                                "File Exists", JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            try {
                                if (!(new File(directory, "ann")).exists())
                                    FileUtils.copyDirectoryToDirectory(
                                            FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                            new File(directory));
                                if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".ffn");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".ffn")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".som");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".som")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                }
                            } catch (IOException io) {
                                System.out.println(io);
                            }

                        }
                    } else {
                        try {
                            if (!(new File(directory, "ann")).exists())
                                FileUtils.copyDirectoryToDirectory(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                        new File(directory));
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".ffn");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory + File.separator
                                        + (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory + File.separator + tempName + ".ffn"))
                                                .exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".som");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory,
                                        (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory, tempName + ".som")).exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            }
                        } catch (IOException io) {
                            System.out.println(io);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Export NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    toJava.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : exportNet.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    //settings menu
    changeConfig.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {

                modifyFFNDialog = new JDialog(mainWindow, "Network Settings", true);
                modifyFFNDialog.setSize(500, 500);
                modifyFFNDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifyFFNDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                learningRateL = new JLabel("Set Learning Rate:");
                modifyFFNDialog.add(learningRateL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                learningRateTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                learningRateTF.setText("");
                modifyFFNDialog.add(learningRateTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                momentumL = new JLabel("Set Momentum:");
                modifyFFNDialog.add(momentumL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                momentumTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                momentumTF.setText("");
                modifyFFNDialog.add(momentumTF, asdf);
                asdf.gridx = 7;
                asdf.gridy = 5;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                /*asdf.gridwidth = 2;
                asdf.gridheight = 1;
                asdf.gridx = 7;
                asdf.gridy = 6;
                setNoise = new JLabel("Use Noise: ");
                modifyFFNDialog.add(setNoise, asdf);
                asdf.gridx = 7;
                asdf.gridy = 7;
                asdf.gridwidth = 1;
                noiseOn = new JRadioButton("yes");
                noiseOff = new JRadioButton("no");
                noiseGroup = new ButtonGroup();
                noiseGroup.add(noiseOn);
                noiseGroup.add(noiseOff);
                modifyFFNDialog.add(noiseOn,asdf);
                asdf.gridx = 8;
                asdf.gridy = 7;
                modifyFFNDialog.add(noiseOff,asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.gridwidth = 2;
                setNoiseRange = new JButton("Set Noise Range");
                modifyFFNDialog.add(setNoiseRange,asdf);
                asdf.gridx = 7;
                asdf.gridy = 9;
                setNoiseTiming = new JButton("Set Noise Timing");
                modifyFFNDialog.add(setNoiseTiming,asdf);*/
                asdf.gridx = 7;
                asdf.gridy = 10;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 11;
                setTrainingStyle = new JLabel("Set Training Style:");
                modifyFFNDialog.add(setTrainingStyle, asdf);
                asdf.gridx = 7;
                asdf.gridy = 12;
                asdf.gridwidth = 1;
                batchOn = new JRadioButton("batch");
                onlineOn = new JRadioButton("online");
                batchGroup = new ButtonGroup();
                batchGroup.add(batchOn);
                batchGroup.add(onlineOn);
                modifyFFNDialog.add(batchOn, asdf);
                asdf.gridx = 8;
                modifyFFNDialog.add(onlineOn, asdf);
                asdf.gridx = 7;
                asdf.gridy = 13;
                asdf.gridwidth = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 14;
                modifyBiases = new JButton("Modify Biases");
                modifyFFNDialog.add(modifyBiases, asdf);
                asdf.gridx = 7;
                asdf.gridy = 15;
                trainingCompletionButton = new JButton("Modify End Condition");
                modifyFFNDialog.add(trainingCompletionButton, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifyFFN = new JButton("OK");
                modifyFFNDialog.add(modifyFFN, asdf);
                asdf.gridx = 7;
                cancelModifyFFN = new JButton("Cancel");
                modifyFFNDialog.add(cancelModifyFFN, asdf);
                settings.setText("");
                settings.append(
                        "\n\n\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                settings.append("\n\nTraining Style: ");
                if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                    settings.append("batch");
                    batchOn.setSelected(true);
                } else {
                    settings.append("online");
                    onlineOn.setSelected(true);
                }
                settings.append("\n\nTraining End Condition: ");
                if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                    settings.append("Iterative");
                    settings.append(
                            "\n\nIterations: " + net.get(resultsPane.getSelectedIndex()).getIterations());
                } else {
                    settings.append("Ideal Error");
                    settings.append(
                            "\n\nIdeal Error: " + net.get(resultsPane.getSelectedIndex()).getIdealError());
                }

                //expiremental feature, needs work on the back end to be properly implemented   
                modifyBiases.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        JButton addBiases, removeBiases;

                        biasesDialog = new JDialog(modifyFFNDialog, "Set Biases");
                        biasesDialog.setSize(200, 46);
                        biasesDialog.setLayout(new GridLayout(2, 1));
                        addBiases = new JButton("Add Bias");
                        removeBiases = new JButton("Remove Bias");

                        biasesDialog.add(addBiases);
                        biasesDialog.add(removeBiases);

                        addBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel, whatBiasValueLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode, whatBiasValue;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                addBiasDialog = new JDialog(modifyFFNDialog, "Add Bias");
                                addBiasDialog.setSize(756, 90);
                                addBiasDialog.setLayout(new GridLayout(4, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will get the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasValueLabel = new JLabel("What Value will the Bias have?");
                                whatBiasValue = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                addBiasDialog.add(howManyBiasLayersLabel);
                                addBiasDialog.add(howManyBiasLayers);
                                addBiasDialog.add(whatBiasNodeLabel);
                                addBiasDialog.add(whatBiasNode);
                                addBiasDialog.add(whatBiasValueLabel);
                                addBiasDialog.add(whatBiasValue);
                                addBiasDialog.add(addBiasOK);
                                addBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")
                                                && !whatBiasValue.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).addBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1,
                                                    Double.parseDouble(whatBiasValue.getText()))) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                addBiasDialog.setVisible(true);
                            }
                        });

                        removeBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                removeBiasDialog = new JDialog(modifyFFNDialog, "Remove Bias");
                                removeBiasDialog.setSize(756, 90);
                                removeBiasDialog.setLayout(new GridLayout(3, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will lose the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                removeBiasDialog.add(howManyBiasLayersLabel);
                                removeBiasDialog.add(howManyBiasLayers);
                                removeBiasDialog.add(whatBiasNodeLabel);
                                removeBiasDialog.add(whatBiasNode);
                                removeBiasDialog.add(addBiasOK);
                                removeBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).removeBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1)) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                removeBiasDialog.setVisible(true);
                            }
                        });

                        biasesDialog.setVisible(true);

                    }
                });

                trainingCompletionButton.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        final JDialog iterationsDialog;
                        JLabel numberOfIterationsLabel;
                        final JFormattedTextField numberOfIterations;
                        JButton iterationsOK, iterationsCancel;
                        iterationsDialog = new JDialog(modifyFFNDialog, "Set Iterations");
                        iterationsDialog.setSize(765, 75);
                        iterationsDialog.setLayout(new GridLayout(2, 2));
                        numberOfIterationsLabel = new JLabel("How Many Iterations do you want to Train?");
                        numberOfIterations = new JFormattedTextField(
                                new NumberFormatter(NumberFormat.getIntegerInstance()));
                        iterationsOK = new JButton("OK");
                        iterationsCancel = new JButton("Cancel");
                        iterationsDialog.add(numberOfIterationsLabel);
                        iterationsDialog.add(numberOfIterations);
                        iterationsDialog.add(iterationsOK);
                        iterationsDialog.add(iterationsCancel);
                        iterationsOK.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                if (!numberOfIterations.getText().equals("")) {
                                    iterationsDialog.setVisible(false);
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .setIterations(Integer.parseInt(numberOfIterations.getText()))) {
                                        settings.setText("");
                                        settings.append("\n\n\n\nLearning Rate: "
                                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                                        settings.append("\n\nMomentum: "
                                                + net.get(resultsPane.getSelectedIndex()).getMomentum());
                                        settings.append("\n\nTraining Style: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                                            settings.append("batch");
                                            batchOn.setSelected(true);
                                        } else {
                                            settings.append("online");
                                            onlineOn.setSelected(true);
                                        }
                                        settings.append("\n\nTraining End Condition: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                                            settings.append("Iterative");
                                            settings.append("\n\nIterations: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                                        } else {
                                            settings.append("Ideal Error");
                                            settings.append("\n\nIdeal Error: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                                        }
                                        modifyFFNDialog.setVisible(true);
                                    } else {
                                        JOptionPane.showMessageDialog(modifyFFNDialog,
                                                "Invalid Number of Iterations", "Math Error",
                                                JOptionPane.ERROR_MESSAGE);
                                    }
                                } else {
                                    JOptionPane.showMessageDialog(iterationsDialog, "Field not filled out",
                                            "Form Error", JOptionPane.ERROR_MESSAGE);
                                }
                            }
                        });
                        iterationsCancel.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                iterationsDialog.setVisible(false);
                            }
                        });
                        iterationsDialog.setVisible(true);
                    }
                });

                modifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (!learningRateTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                            learningRateTF.setText("");
                        }
                        if (!momentumTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                            momentumTF.setText("");
                        }
                        if (batchOn.isSelected()) {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(true);
                        } else {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(false);
                        }

                        modifyFFNDialog.setVisible(false);
                    }
                });

                learningRateTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (learningRateTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");

                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                momentumTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (momentumTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");
                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                cancelModifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifyFFNDialog.setVisible(false);
                    }
                });
                modifyFFNDialog.setVisible(true);
            }
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                modifySOMDialog = new JDialog(mainWindow, "Network Settings", true);
                modifySOMDialog.setSize(500, 400);
                modifySOMDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifySOMDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                mIterationL = new JLabel("Set Number of Iterations:");
                modifySOMDialog.add(mIterationL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mIterationTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
                mIterationTF.setText("");
                modifySOMDialog.add(mIterationTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                mLRL = new JLabel("Set Learning Rate (0-1):");
                modifySOMDialog.add(mLRL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mLRTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mLRTF.setText("");
                modifySOMDialog.add(mLRTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 5;
                mMaxL = new JLabel("Set Data Maximum:");
                modifySOMDialog.add(mMaxL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 6;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMaxTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMaxTF.setText("");
                modifySOMDialog.add(mMaxTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 7;
                mMinL = new JLabel("Set Data Minimum:");
                modifySOMDialog.add(mMinL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMinTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMinTF.setText("");
                modifySOMDialog.add(mMinTF, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifySOM = new JButton("OK");
                modifySOMDialog.add(modifySOM, asdf);
                asdf.gridx = 7;
                cancelModifySOM = new JButton("Cancel");
                modifySOMDialog.add(cancelModifySOM, asdf);
                settings.setText("");
                settings.append("\n\nNumber of Iterations: "
                        + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                settings.append(
                        "\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nData Maximum: " + net.get(resultsPane.getSelectedIndex()).getDataMax());
                settings.append("\n\nData Minimum: " + net.get(resultsPane.getSelectedIndex()).getDataMin());

                mIterationTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (mIterationTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        }
                    }
                });

                mLRTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mLRTF.getText() != "") && ((Double.parseDouble(mLRTF.getText())) <= 1.0)) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(mLRTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mLRTF, "Pick a number from 0 - 1", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                            mLRTF.setText("");
                        }
                    }
                });

                mMaxTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMaxTF.getText() != "") && (((Double.parseDouble(mMaxTF.getText())) > net
                                .get(resultsPane.getSelectedIndex()).getDataMin()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMax(Double.parseDouble(mMaxTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMaxTF, "Max value must be greater than Min value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMaxTF.setText("");
                        }
                    }
                });

                mMinTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMinTF.getText() != "") && ((Double.parseDouble(mMinTF.getText())) < net
                                .get(resultsPane.getSelectedIndex()).getDataMax())) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMin(Double.parseDouble(mMinTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMinTF, "Min value must be less than Max value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMinTF.setText("");
                        }
                    }
                });

                modifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        boolean error = false;
                        if (!("".equals(mIterationTF.getText()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));
                        }
                        if (!("".equals(mLRTF.getText()))) {
                            if ((Double.parseDouble(mLRTF.getText())) > 1.0) {
                                error = true;
                                mLRTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setLearningRate(Double.parseDouble(mLRTF.getText()));
                        }
                        if (!("".equals(mMaxTF.getText()))) {
                            if (((Double.parseDouble(mMaxTF.getText())) < net
                                    .get(resultsPane.getSelectedIndex()).getDataMin())) {
                                error = true;
                                mMaxTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMax(Double.parseDouble(mMaxTF.getText()));
                        }
                        if (!("".equals(mMinTF.getText()))) {
                            if ((Double.parseDouble(mMinTF.getText())) > net.get(resultsPane.getSelectedIndex())
                                    .getDataMax()) {
                                error = true;
                                mMinTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMin(Double.parseDouble(mMinTF.getText()));
                        }

                        if (error == true) {
                            JOptionPane.showMessageDialog(modifySOMDialog,
                                    "One or more fields have incorrect values", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                        } else {
                            modifySOMDialog.setVisible(false);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                            printInitMap();
                        }

                    }
                });

                cancelModifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifySOMDialog.setVisible(false);
                    }
                });

                modifySOMDialog.setVisible(true);
            }
        }

    });

    modify.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : changeConfig.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //The following code is for the newNet button under file:

    //create a dialog to be activated when "New Network" is pressed in the file menu
    newDialog = new JDialog(mainWindow, "New Network", true);
    newDialog.setSize(375, 100);
    newDialog.setLayout(new GridLayout(3, 2)); //going to change the layout to GridBagLayout for better customization

    name = new JLabel("Network Name:");
    newName = new JTextField(10);
    type = new JLabel("Type of Network:");
    netTypes = new String[] { "Feed Forward Network", "Self-Organizing Map" };
    netType = new JComboBox<String>(netTypes);
    netType.setSelectedItem("Feed Forward Network");
    createNewNet = new JButton("create");
    cancelNew = new JButton("cancel");
    newDialog.add(name);
    newDialog.add(newName);
    newDialog.add(type);
    newDialog.add(netType);
    newDialog.add(createNewNet);
    newDialog.add(cancelNew);

    //utilities for a second dialog(Feed Forward Network) in the process of creating a new network   
    number = new JLabel("Enter the number of layers you want for your network:");
    howManyLayers = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFNArchitecture = new JButton("OK");
    cancelFFN = new JButton("Cancel");

    howManyNodes = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFN = new JButton("OK");
    cancelNodes = new JButton("Cancel");

    //Written by Michael Scott
    somLattice = new JLabel("   Lattice number for your Map:");
    somLatticeField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somLatticeField.setFocusLostBehavior(1);
    somMax = new JLabel("   Maximum value of your input (if known):");
    somMaxField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMaxField.setFocusLostBehavior(1);
    somMin = new JLabel("   Minimum value of your input (if known):");
    somMinField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMinField.setFocusLostBehavior(1);
    somDim = new JLabel("   Node Dimensions:");
    somDimField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somDimField.setFocusLostBehavior(1);
    createSOM = new JButton("OK");
    cancelSOM = new JButton("Cancel");

    //displays the newDialog window when newNet is pressed
    newNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            newDialog.setVisible(true);
        }
    });

    newwer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(true);
        }
    });

    //makes hitting enter in the text box do the same thing as clicking "create"
    newName.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createNewNet.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //when create net is pressed, this reads the selections from the newNet dialog and creates the approriate next dialog
    createNewNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int test;
            test = 0;
            for (StringBuffer names : netName) {
                if (names.toString().equals(newName.getText()))
                    test = 1;
            }
            if (test == 0)
                if (!newName.getText().equals("")) {
                    if (netType.getSelectedIndex() == 0) { //if the net selected is Feed Forward, create and display the prompt for a feed forward network
                        newDialog.setVisible(false);
                        fFNDialog = new JDialog(mainWindow, newName.getText(), true);
                        fFNDialog.setSize(919, 65);
                        fFNDialog.setLayout(new GridLayout(2, 2));
                        fFNDialog.add(number);
                        fFNDialog.add(howManyLayers);
                        fFNDialog.add(createFFNArchitecture);
                        fFNDialog.add(cancelFFN);
                        fFNDialog.setVisible(true);
                    }
                    //Written by Michael Scott
                    if (netType.getSelectedIndex() == 1) {
                        newDialog.setVisible(false);
                        sOMDialog = new JDialog(mainWindow, newName.getText(), true);
                        sOMDialog.setSize(500, 180);
                        sOMDialog.setLayout(new GridLayout(5, 2));
                        sOMDialog.add(somLattice);
                        sOMDialog.add(somLatticeField);
                        sOMDialog.add(somDim);
                        sOMDialog.add(somDimField);
                        sOMDialog.add(somMax);
                        sOMDialog.add(somMaxField);
                        sOMDialog.add(somMin);
                        sOMDialog.add(somMinField);
                        sOMDialog.add(createSOM);
                        sOMDialog.add(cancelSOM);
                        sOMDialog.setVisible(true);

                    }
                } else
                    JOptionPane.showMessageDialog(createNewNet, "Network must have a Name",
                            "Namelessness Error", JOptionPane.ERROR_MESSAGE);
            else {
                JOptionPane.showMessageDialog(createNewNet, "Network " + newName.getText() + " already exists",
                        "Existential Naming Error", JOptionPane.ERROR_MESSAGE);
                newName.setText("");
            }
        }

    });
    //beginning of section about creating Feed Forward Networks   
    //cancel clears the name field and hides the newDialog dialog
    cancelNew.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(false);
            newName.setText("");
        }
    });

    //makes hitting enter the same as clicking "ok"
    howManyLayers.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFNArchitecture.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //create a prompt for the first layer to determine how many nodes will go into the first layer
    createFFNArchitecture.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyLayers.getText().equals("")
                    && (layers = Integer.parseInt(howManyLayers.getText())) > 1) {
                nodeConfiguration = new int[layers]; //create an array to hold the node configuration that will be passed to the Net constructor
                layer = 1; //create a variable to hold the current layer the prompt series is on
                numberofNodes = new JLabel("How many nodes do you want in layer " + layer + "?");
                fFNDialog.setVisible(false);
                howManyNodesDialog = new JDialog(mainWindow, newName.getText(), true);
                howManyNodesDialog.setSize(919, 65);
                howManyNodesDialog.setLayout(new GridLayout(2, 2));
                howManyNodesDialog.add(numberofNodes);
                howManyNodesDialog.add(howManyNodes);
                howManyNodesDialog.add(createFFN);
                howManyNodesDialog.add(cancelNodes);
                howManyNodesDialog.setVisible(true);
            } else {
                //if the string is not valid, pop up an error message
                JOptionPane.showMessageDialog(fFNDialog,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 1</html>",
                        "Out of Bounds", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //runs each time ok is pressed, until all the layers have a vaule for the number of nodes in the layer
    createFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyNodes.getText().equals("")
                    && (nodeConfiguration[layer - 1] = Integer.parseInt(howManyNodes.getText())) > 0) {
                if (layer == layers) {
                    try {
                        //adds a close button to the top corner of each tab
                        title.add(new JLabel(newName.getText() + " "));
                        close.add(new JButton("X"));
                        close.get(openNets).setActionCommand(newName.getText());
                        close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                        close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                        tabPanel.add(new JPanel(new GridBagLayout()));
                        tabPanel.get(openNets).setOpaque(false);
                        GridBagConstraints grid = new GridBagConstraints();
                        grid.fill = GridBagConstraints.HORIZONTAL;
                        grid.gridx = 0;
                        grid.gridy = 0;
                        grid.weightx = 1;
                        tabPanel.get(openNets).add(title.get(openNets), grid);
                        grid.gridx = 1;
                        grid.gridy = 0;
                        grid.weightx = 0;
                        tabPanel.get(openNets).add(close.get(openNets), grid);

                        //adds a loading bar
                        loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                        loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                        loadingBar.get(openNets).setVisible(false);
                        //creates and sets the network configuration
                        net.add(new FullyConnectedFeedForwardNet(nodeConfiguration));

                        netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                        netName.add(new StringBuffer(newName.getText()));
                        oneNet.add(new JPanel());
                        oneNet.get(openNets).setLayout(new GridBagLayout());
                        GridBagConstraints constraints = new GridBagConstraints();
                        constraints.fill = GridBagConstraints.BOTH;

                        //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                        readOut.add(new JTextArea(""));
                        readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                        readOut.get(openNets).setEditable(false);
                        constraints.gridx = 0;
                        constraints.gridy = 0;
                        constraints.weighty = 1.0;
                        constraints.weightx = 1.0;
                        constraints.gridwidth = 2;
                        constraints.ipady = 90;
                        oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                        constraints.fill = GridBagConstraints.HORIZONTAL;
                        constraints.gridx = 0;
                        constraints.gridy = 1;
                        constraints.ipady = 0;
                        constraints.gridwidth = 2;
                        constraints.anchor = GridBagConstraints.PAGE_END;

                        //add everythign to the tabbed pane
                        oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                        resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                        resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                        path.add("");

                        //display the starting configuration of the network
                        readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                        resultsPane.setSelectedIndex(openNets++);
                        printConnections();

                        //erases all the text in the setup fields and closes the window
                        howManyNodes.setValue(null);
                        howManyLayers.setText("");
                        newName.setText("");
                        howManyNodesDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createFFN,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (OutOfMemoryError e) {
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                                "Memory Error", JOptionPane.ERROR_MESSAGE);
                    }
                } else {
                    layer++;
                    howManyNodes.setText("");
                    numberofNodes.setText("How many nodes do you want in layer " + layer + "?");
                }

            } else {
                JOptionPane.showMessageDialog(createFFN,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 0", "Out of Bounds",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //makes hitting enter in text box the same as clicking ok
    howManyNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFN.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //cancels the node prompt
    cancelNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            howManyNodes.setText("");
            howManyNodesDialog.setVisible(false);
        }
    });

    //cancel clears both name fields so far filled in the series of dialogs and hides the dialog
    cancelFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            fFNDialog.setVisible(false);
        }
    });
    //end of section about creating FFNs
    //end of section about newNet   

    //Method to create a SOM
    createSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (somLatticeField.getText().equals("") || somDimField.getText().equals("")) {
                JOptionPane.showMessageDialog(createSOM, "<html>Empty Field<br>Please Fill All Fields",
                        "Empty Field", JOptionPane.ERROR_MESSAGE);
            } else {
                if (somMaxField.getText().equals(""))
                    somMaxField.setText("100");
                if (somMinField.getText().equals(""))
                    somMinField.setText("0");
                if (Double.parseDouble(somMaxField.getText().replace(",", "")) < Double
                        .parseDouble(somMinField.getText().replace(",", ""))) {
                    JOptionPane.showMessageDialog(createSOM, "MIN GREATER THAN MAX!!!!", "Stupidity Error",
                            JOptionPane.ERROR_MESSAGE);
                }

                try {
                    //adds a close button to the top corner of each tab
                    title.add(new JLabel(newName.getText() + " "));
                    close.add(new JButton("X"));
                    close.get(openNets).setActionCommand(newName.getText());
                    close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                    close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                    tabPanel.add(new JPanel(new GridBagLayout()));
                    tabPanel.get(openNets).setOpaque(false);
                    GridBagConstraints grid = new GridBagConstraints();
                    grid.fill = GridBagConstraints.HORIZONTAL;
                    grid.gridx = 0;
                    grid.gridy = 0;
                    grid.weightx = 1;
                    tabPanel.get(openNets).add(title.get(openNets), grid);
                    grid.gridx = 1;
                    grid.gridy = 0;
                    grid.weightx = 0;
                    tabPanel.get(openNets).add(close.get(openNets), grid);

                    //adds a loading bar
                    loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                    loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                    loadingBar.get(openNets).setVisible(false);
                    //creates and sets the network configuration
                    net.add(new SelfOrganizingMap());

                    netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                    netName.add(new StringBuffer(newName.getText()));
                    oneNet.add(new JPanel());
                    oneNet.get(openNets).setLayout(new GridBagLayout());
                    GridBagConstraints constraints = new GridBagConstraints();
                    constraints.fill = GridBagConstraints.BOTH;

                    //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                    readOut.add(new JTextArea(""));
                    readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                    readOut.get(openNets).setEditable(false);
                    constraints.gridx = 0;
                    constraints.gridy = 0;
                    constraints.weighty = 1.0;
                    constraints.weightx = 1.0;
                    constraints.gridwidth = 2;
                    constraints.ipady = 90;
                    oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                    constraints.fill = GridBagConstraints.HORIZONTAL;
                    constraints.gridx = 0;
                    constraints.gridy = 1;
                    constraints.ipady = 0;
                    constraints.gridwidth = 2;
                    constraints.anchor = GridBagConstraints.PAGE_END;

                    //add everythign to the tabbed pane
                    oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                    resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                    resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                    path.add("");

                    //display the starting configuration of the network
                    readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                    resultsPane.setSelectedIndex(openNets++);
                    try {
                        net.get(resultsPane.getSelectedIndex())
                                .setLatticeValue(Integer.parseInt(somLatticeField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMax(Double.parseDouble(somMaxField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMin(Double.parseDouble(somMinField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setInputDimensions(Integer.parseInt(somDimField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex()).runNet();
                        readOut.get(resultsPane.getSelectedIndex()).append("Initial Untrained Map:\n");
                        printInitMap();

                        if (!getColorMap.isVisible()) {
                            util.addSeparator();
                            util.add(getColorMap);
                            getColorMap.setVisible(true);
                        }

                        //erases all the text in the setup fields and closes the window
                        newName.setText("");
                        somLatticeField.setText("");
                        somDimField.setText("");
                        somMaxField.setText("");
                        somMinField.setText("");
                        sOMDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createSOM,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (Exception e) {
                        net.remove(resultsPane.getSelectedIndex());
                        oneNet.remove(resultsPane.getSelectedIndex());
                        readOutLocale.remove(resultsPane.getSelectedIndex());
                        readOut.remove(resultsPane.getSelectedIndex());
                        loadingBar.remove(resultsPane.getSelectedIndex());
                        tabPanel.remove(resultsPane.getSelectedIndex());
                        title.remove(resultsPane.getSelectedIndex());
                        close.remove(resultsPane.getSelectedIndex());
                        netName.remove(resultsPane.getSelectedIndex());
                        resultsPane.remove(resultsPane.getSelectedIndex());
                        openNets--;
                        JOptionPane.showMessageDialog(sOMDialog, "Numbers too large to parse", "Parse error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                } catch (OutOfMemoryError e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                            "Memory Error", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    cancelSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            somLatticeField.setText("");
            somMaxField.setText("");
            somMinField.setText("");
            sOMDialog.setVisible(false);
        }
    });

    //end of SOM creation
    mainWindow.setVisible(true);
}

From source file:edu.ku.brc.ui.UIHelper.java

public static JFormattedTextField createFormattedTexField(final String mask) {
    JFormattedTextField ftf = new JFormattedTextField(createFormatterMask(mask));
    setControlSize(ftf);/* ww w.  jav  a2s  .com*/
    return ftf;
}

From source file:org.micromanager.asidispim.AcquisitionPanel.java

public AcquisitionPanel(ScriptInterface gui, Devices devices, Properties props, Cameras cameras, Prefs prefs,
        StagePositionUpdater posUpdater, Positions positions, ControllerUtils controller,
        AutofocusUtils autofocus) {/*from  ww w  .  ja v a 2 s  .com*/
    super(MyStrings.PanelNames.ACQUSITION.toString(),
            new MigLayout("", "[center]0[center]0[center]", "0[top]0"));
    gui_ = gui;
    devices_ = devices;
    props_ = props;
    cameras_ = cameras;
    prefs_ = prefs;
    posUpdater_ = posUpdater;
    positions_ = positions;
    controller_ = controller;
    autofocus_ = autofocus;
    core_ = gui_.getMMCore();
    numTimePointsDone_ = 0;
    sliceTiming_ = new SliceTiming();
    lastAcquisitionPath_ = "";
    lastAcquisitionName_ = "";
    acq_ = null;
    channelNames_ = null;
    resetXaxisSpeed_ = true;
    acquisitionPanel_ = this;

    PanelUtils pu = new PanelUtils(prefs_, props_, devices_);

    // added to spinner controls where we should re-calculate the displayed
    // slice period, volume duration, and time lapse duration
    ChangeListener recalculateTimingDisplayCL = new ChangeListener() {
        @Override
        public void stateChanged(ChangeEvent e) {
            if (advancedSliceTimingCB_.isSelected()) {
                // need to update sliceTiming_ from property values
                sliceTiming_ = getTimingFromAdvancedSettings();
            }
            updateDurationLabels();
        }
    };

    // added to combobox controls where we should re-calculate the displayed
    // slice period, volume duration, and time lapse duration
    ActionListener recalculateTimingDisplayAL = new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            updateDurationLabels();
        }
    };

    // start volume sub-panel

    volPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "4[]8[]"));

    volPanel_.setBorder(PanelUtils.makeTitledBorder("Volume Settings"));

    if (!ASIdiSPIM.oSPIM) {
    } else {
        props_.setPropValue(Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_NUM_SIDES, "1");
    }
    volPanel_.add(new JLabel("Number of sides:"));
    String[] str12 = { "1", "2" };
    numSides_ = pu.makeDropDownBox(str12, Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_NUM_SIDES, str12[1]);
    numSides_.addActionListener(recalculateTimingDisplayAL);
    if (!ASIdiSPIM.oSPIM) {
    } else {
        numSides_.setEnabled(false);
    }
    volPanel_.add(numSides_, "wrap");

    volPanel_.add(new JLabel("First side:"));
    String[] ab = { Devices.Sides.A.toString(), Devices.Sides.B.toString() };
    if (!ASIdiSPIM.oSPIM) {
    } else {
        props_.setPropValue(Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_FIRST_SIDE, Devices.Sides.A.toString());
    }
    firstSide_ = pu.makeDropDownBox(ab, Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_FIRST_SIDE,
            Devices.Sides.A.toString());
    firstSide_.addActionListener(recalculateTimingDisplayAL);
    if (!ASIdiSPIM.oSPIM) {
    } else {
        firstSide_.setEnabled(false);
    }
    volPanel_.add(firstSide_, "wrap");

    volPanel_.add(new JLabel("Delay before side [ms]:"));
    // used to read/write directly to galvo/micro-mirror firmware, but want different stage scan behavior
    delaySide_ = pu.makeSpinnerFloat(0, 10000, 0.25, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_DELAY_BEFORE_SIDE, 50);
    pu.addListenerLast(delaySide_, recalculateTimingDisplayCL);
    volPanel_.add(delaySide_, "wrap");

    volPanel_.add(new JLabel("Slices per side:"));
    numSlices_ = pu.makeSpinnerInteger(1, 65000, Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_NUM_SLICES, 20);
    pu.addListenerLast(numSlices_, recalculateTimingDisplayCL);
    volPanel_.add(numSlices_, "wrap");

    volPanel_.add(new JLabel("Slice step size [\u00B5m]:"));
    stepSize_ = pu.makeSpinnerFloat(0, 100, 0.1, Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_SLICE_STEP_SIZE,
            1.0);
    pu.addListenerLast(stepSize_, recalculateTimingDisplayCL); // needed only for stage scanning b/c acceleration time related to speed
    volPanel_.add(stepSize_, "wrap");

    // end volume sub-panel

    // start slice timing controls, have 2 options with advanced timing checkbox shared
    slicePanel_ = new JPanel(new MigLayout("", "[right]10[center]", "0[]0[]"));

    slicePanel_.setBorder(PanelUtils.makeTitledBorder("Slice Settings"));

    // start light sheet controls
    lightSheetPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "4[]8"));

    lightSheetPanel_.add(new JLabel("Scan reset time [ms]:"));
    JSpinner lsScanReset = pu.makeSpinnerFloat(1, 100, 0.25, // practical lower limit of 1ms
            Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_LS_SCAN_RESET, 3);
    lsScanReset.addChangeListener(PanelUtils.coerceToQuarterIntegers(lsScanReset));
    pu.addListenerLast(lsScanReset, recalculateTimingDisplayCL);
    lightSheetPanel_.add(lsScanReset, "wrap");

    lightSheetPanel_.add(new JLabel("Scan settle time [ms]:"));
    JSpinner lsScanSettle = pu.makeSpinnerFloat(0.25, 100, 0.25, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_LS_SCAN_SETTLE, 1);
    lsScanSettle.addChangeListener(PanelUtils.coerceToQuarterIntegers(lsScanSettle));
    pu.addListenerLast(lsScanSettle, recalculateTimingDisplayCL);
    lightSheetPanel_.add(lsScanSettle, "wrap");

    lightSheetPanel_.add(new JLabel("Shutter width [\u00B5m]:"));
    JSpinner lsShutterWidth = pu.makeSpinnerFloat(0.1, 100, 1, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_LS_SHUTTER_WIDTH, 5);
    pu.addListenerLast(lsShutterWidth, recalculateTimingDisplayCL);
    lightSheetPanel_.add(lsShutterWidth);

    //      lightSheetPanel_.add(new JLabel("1 / (shutter speed):"));
    //      JSpinner lsShutterSpeed = pu.makeSpinnerInteger(1, 10,
    //            Devices.Keys.PLUGIN, Properties.Keys.PLUGIN_LS_SHUTTER_SPEED, 1);
    //      lightSheetPanel_.add(lsShutterSpeed, "wrap");

    // end light sheet controls

    // start "normal" (not light sheet) controls

    normalPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "4[]8"));

    // out of order so we can reference it
    desiredSlicePeriod_ = pu.makeSpinnerFloat(1, 1000, 0.25, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_DESIRED_SLICE_PERIOD, 30);

    minSlicePeriodCB_ = pu.makeCheckBox("Minimize slice period", Properties.Keys.PREFS_MINIMIZE_SLICE_PERIOD,
            panelName_, false);
    minSlicePeriodCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            boolean doMin = minSlicePeriodCB_.isSelected();
            desiredSlicePeriod_.setEnabled(!doMin);
            desiredSlicePeriodLabel_.setEnabled(!doMin);
            recalculateSliceTiming(false);
        }
    });
    normalPanel_.add(minSlicePeriodCB_, "span 2, wrap");

    // special field that is enabled/disabled depending on whether advanced timing is enabled
    desiredSlicePeriodLabel_ = new JLabel("Slice period [ms]:");
    normalPanel_.add(desiredSlicePeriodLabel_);
    normalPanel_.add(desiredSlicePeriod_, "wrap");
    desiredSlicePeriod_.addChangeListener(PanelUtils.coerceToQuarterIntegers(desiredSlicePeriod_));
    desiredSlicePeriod_.addChangeListener(recalculateTimingDisplayCL);

    // special field that is enabled/disabled depending on whether advanced timing is enabled
    desiredLightExposureLabel_ = new JLabel("Sample exposure [ms]:");
    normalPanel_.add(desiredLightExposureLabel_);
    desiredLightExposure_ = pu.makeSpinnerFloat(1.0, 1000, 0.25, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_DESIRED_EXPOSURE, 8.5);
    desiredLightExposure_.addChangeListener(PanelUtils.coerceToQuarterIntegers(desiredLightExposure_));
    desiredLightExposure_.addChangeListener(recalculateTimingDisplayCL);
    normalPanel_.add(desiredLightExposure_);

    // end normal simple slice timing controls

    slicePanelContainer_ = new JPanel(new MigLayout("", "0[center]0", "0[]0"));
    slicePanelContainer_.add(
            getSPIMCameraMode() == CameraModes.Keys.LIGHT_SHEET ? lightSheetPanel_ : normalPanel_, "growx");
    slicePanel_.add(slicePanelContainer_, "span 2, center, wrap");

    // special checkbox to use the advanced timing settings
    // action handler added below after defining components it enables/disables
    advancedSliceTimingCB_ = pu.makeCheckBox("Use advanced timing settings",
            Properties.Keys.PREFS_ADVANCED_SLICE_TIMING, panelName_, false);
    slicePanel_.add(advancedSliceTimingCB_, "span 2, left");

    // end slice sub-panel

    // start advanced slice timing frame
    // visibility of this frame is controlled from advancedTiming checkbox
    // this frame is separate from main plugin window

    sliceFrameAdvanced_ = new MMFrame();
    sliceFrameAdvanced_.setTitle("Advanced timing");
    sliceFrameAdvanced_.loadPosition(100, 100);

    sliceAdvancedPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));
    sliceFrameAdvanced_.add(sliceAdvancedPanel_);

    class SliceFrameAdapter extends WindowAdapter {
        @Override
        public void windowClosing(WindowEvent e) {
            advancedSliceTimingCB_.setSelected(false);
            sliceFrameAdvanced_.savePosition();
        }
    }

    sliceFrameAdvanced_.addWindowListener(new SliceFrameAdapter());

    JLabel scanDelayLabel = new JLabel("Delay before scan [ms]:");
    sliceAdvancedPanel_.add(scanDelayLabel);
    delayScan_ = pu.makeSpinnerFloat(0, 10000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB }, Properties.Keys.SPIM_DELAY_SCAN,
            0);
    delayScan_.addChangeListener(PanelUtils.coerceToQuarterIntegers(delayScan_));
    delayScan_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(delayScan_, "wrap");

    JLabel lineScanLabel = new JLabel("Lines scans per slice:");
    sliceAdvancedPanel_.add(lineScanLabel);
    numScansPerSlice_ = pu.makeSpinnerInteger(1, 1000,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB },
            Properties.Keys.SPIM_NUM_SCANSPERSLICE, 1);
    numScansPerSlice_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(numScansPerSlice_, "wrap");

    JLabel lineScanPeriodLabel = new JLabel("Line scan duration [ms]:");
    sliceAdvancedPanel_.add(lineScanPeriodLabel);
    lineScanDuration_ = pu.makeSpinnerFloat(1, 10000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB }, Properties.Keys.SPIM_DURATION_SCAN,
            10);
    lineScanDuration_.addChangeListener(PanelUtils.coerceToQuarterIntegers(lineScanDuration_));
    lineScanDuration_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(lineScanDuration_, "wrap");

    JLabel delayLaserLabel = new JLabel("Delay before laser [ms]:");
    sliceAdvancedPanel_.add(delayLaserLabel);
    delayLaser_ = pu.makeSpinnerFloat(0, 10000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB }, Properties.Keys.SPIM_DELAY_LASER,
            0);
    delayLaser_.addChangeListener(PanelUtils.coerceToQuarterIntegers(delayLaser_));
    delayLaser_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(delayLaser_, "wrap");

    JLabel durationLabel = new JLabel("Laser trig duration [ms]:");
    sliceAdvancedPanel_.add(durationLabel);
    durationLaser_ = pu.makeSpinnerFloat(0, 10000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB },
            Properties.Keys.SPIM_DURATION_LASER, 1);
    durationLaser_.addChangeListener(PanelUtils.coerceToQuarterIntegers(durationLaser_));
    durationLaser_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(durationLaser_, "span 2, wrap");

    JLabel delayLabel = new JLabel("Delay before camera [ms]:");
    sliceAdvancedPanel_.add(delayLabel);
    delayCamera_ = pu.makeSpinnerFloat(0, 10000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB }, Properties.Keys.SPIM_DELAY_CAMERA,
            0);
    delayCamera_.addChangeListener(PanelUtils.coerceToQuarterIntegers(delayCamera_));
    delayCamera_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(delayCamera_, "wrap");

    JLabel cameraLabel = new JLabel("Camera trig duration [ms]:");
    sliceAdvancedPanel_.add(cameraLabel);
    durationCamera_ = pu.makeSpinnerFloat(0, 1000, 0.25,
            new Devices.Keys[] { Devices.Keys.GALVOA, Devices.Keys.GALVOB },
            Properties.Keys.SPIM_DURATION_CAMERA, 0);
    durationCamera_.addChangeListener(PanelUtils.coerceToQuarterIntegers(durationCamera_));
    durationCamera_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(durationCamera_, "wrap");

    JLabel exposureLabel = new JLabel("Camera exposure [ms]:");
    sliceAdvancedPanel_.add(exposureLabel);
    exposureCamera_ = pu.makeSpinnerFloat(0, 1000, 0.25, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_ADVANCED_CAMERA_EXPOSURE, 10f);
    exposureCamera_.addChangeListener(recalculateTimingDisplayCL);
    sliceAdvancedPanel_.add(exposureCamera_, "wrap");

    alternateBeamScanCB_ = pu.makeCheckBox("Alternate scan direction",
            Properties.Keys.PREFS_SCAN_OPPOSITE_DIRECTIONS, panelName_, false);
    sliceAdvancedPanel_.add(alternateBeamScanCB_, "center, span 2, wrap");

    simpleTimingComponents_ = new JComponent[] { desiredLightExposure_, minSlicePeriodCB_,
            desiredSlicePeriodLabel_, desiredLightExposureLabel_ };
    final JComponent[] advancedTimingComponents = { delayScan_, numScansPerSlice_, lineScanDuration_,
            delayLaser_, durationLaser_, delayCamera_, durationCamera_, exposureCamera_, alternateBeamScanCB_ };
    PanelUtils.componentsSetEnabled(advancedTimingComponents, advancedSliceTimingCB_.isSelected());
    PanelUtils.componentsSetEnabled(simpleTimingComponents_, !advancedSliceTimingCB_.isSelected());

    // this action listener takes care of enabling/disabling inputs
    // of the advanced slice timing window
    // we call this to get GUI looking right
    ItemListener sliceTimingDisableGUIInputs = new ItemListener() {
        @Override
        public void itemStateChanged(ItemEvent e) {
            boolean enabled = advancedSliceTimingCB_.isSelected();
            // set other components in this advanced timing frame
            PanelUtils.componentsSetEnabled(advancedTimingComponents, enabled);
            // also control some components in main volume settings sub-panel
            PanelUtils.componentsSetEnabled(simpleTimingComponents_, !enabled);
            desiredSlicePeriod_.setEnabled(!enabled && !minSlicePeriodCB_.isSelected());
            desiredSlicePeriodLabel_.setEnabled(!enabled && !minSlicePeriodCB_.isSelected());
            updateDurationLabels();
        }

    };

    // this action listener shows/hides the advanced timing frame
    ActionListener showAdvancedTimingFrame = new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            boolean enabled = advancedSliceTimingCB_.isSelected();
            if (enabled) {
                sliceFrameAdvanced_.setVisible(enabled);
            }
        }
    };

    sliceFrameAdvanced_.pack();
    sliceFrameAdvanced_.setResizable(false);

    // end slice Frame

    // start repeat (time lapse) sub-panel

    timepointPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));

    useTimepointsCB_ = pu.makeCheckBox("Time points", Properties.Keys.PREFS_USE_TIMEPOINTS, panelName_, false);
    useTimepointsCB_.setToolTipText("Perform a time-lapse acquisition");
    useTimepointsCB_.setEnabled(true);
    useTimepointsCB_.setFocusPainted(false);
    ComponentTitledBorder componentBorder = new ComponentTitledBorder(useTimepointsCB_, timepointPanel_,
            BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
    timepointPanel_.setBorder(componentBorder);

    ChangeListener recalculateTimeLapseDisplay = new ChangeListener() {
        @Override
        public void stateChanged(ChangeEvent e) {
            updateActualTimeLapseDurationLabel();
        }
    };

    useTimepointsCB_.addChangeListener(recalculateTimeLapseDisplay);

    timepointPanel_.add(new JLabel("Number:"));
    numTimepoints_ = pu.makeSpinnerInteger(1, 100000, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_NUM_ACQUISITIONS, 1);
    numTimepoints_.addChangeListener(recalculateTimeLapseDisplay);
    numTimepoints_.addChangeListener(new ChangeListener() {
        @Override
        public void stateChanged(ChangeEvent arg0) {
            // update nrRepeats_ variable so the acquisition can be extended or shortened
            //   as long as we have separate timepoints
            if (acquisitionRunning_.get() && getSavingSeparateFile()) {
                nrRepeats_ = getNumTimepoints();
            }
        }
    });
    timepointPanel_.add(numTimepoints_, "wrap");

    timepointPanel_.add(new JLabel("Interval [s]:"));
    acquisitionInterval_ = pu.makeSpinnerFloat(0.1, 32000, 0.1, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_ACQUISITION_INTERVAL, 60);
    acquisitionInterval_.addChangeListener(recalculateTimeLapseDisplay);
    timepointPanel_.add(acquisitionInterval_, "wrap");

    // enable/disable panel elements depending on checkbox state
    useTimepointsCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(timepointPanel_, useTimepointsCB_.isSelected());
        }
    });
    PanelUtils.componentsSetEnabled(timepointPanel_, useTimepointsCB_.isSelected()); // initialize

    // end repeat sub-panel

    // start savePanel

    // TODO for now these settings aren't part of acquisition settings
    // TODO consider whether that should be changed

    final int textFieldWidth = 16;
    savePanel_ = new JPanel(new MigLayout("", "[right]10[center]8[left]", "[]4[]"));
    savePanel_.setBorder(PanelUtils.makeTitledBorder("Data Saving Settings"));

    separateTimePointsCB_ = pu.makeCheckBox("Separate viewer / file for each time point",
            Properties.Keys.PREFS_SEPARATE_VIEWERS_FOR_TIMEPOINTS, panelName_, false);

    saveCB_ = pu.makeCheckBox("Save while acquiring", Properties.Keys.PREFS_SAVE_WHILE_ACQUIRING, panelName_,
            false);

    // make sure that when separate viewer is enabled then saving gets enabled too
    separateTimePointsCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            if (separateTimePointsCB_.isSelected() && !saveCB_.isSelected()) {
                saveCB_.doClick(); // setSelected() won't work because need to call its listener
            }
        }
    });
    savePanel_.add(separateTimePointsCB_, "span 3, left, wrap");
    savePanel_.add(saveCB_, "skip 1, span 2, center, wrap");

    JLabel dirRootLabel = new JLabel("Directory root:");
    savePanel_.add(dirRootLabel);

    DefaultFormatter formatter = new DefaultFormatter();
    formatter.setOverwriteMode(false);
    rootField_ = new JFormattedTextField(formatter);
    rootField_.setText(prefs_.getString(panelName_, Properties.Keys.PLUGIN_DIRECTORY_ROOT, ""));
    rootField_.addPropertyChangeListener(new PropertyChangeListener() {
        // will respond to commitEdit() as well as GUI edit on commit
        @Override
        public void propertyChange(PropertyChangeEvent evt) {
            prefs_.putString(panelName_, Properties.Keys.PLUGIN_DIRECTORY_ROOT, rootField_.getText());
        }
    });
    rootField_.setColumns(textFieldWidth);
    savePanel_.add(rootField_, "span 2");

    JButton browseRootButton = new JButton();
    browseRootButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(final ActionEvent e) {
            setRootDirectory(rootField_);
            prefs_.putString(panelName_, Properties.Keys.PLUGIN_DIRECTORY_ROOT, rootField_.getText());
        }
    });
    browseRootButton.setMargin(new Insets(2, 5, 2, 5));
    browseRootButton.setText("...");
    savePanel_.add(browseRootButton, "wrap");

    JLabel namePrefixLabel = new JLabel();
    namePrefixLabel.setText("Name prefix:");
    savePanel_.add(namePrefixLabel);

    prefixField_ = new JFormattedTextField(formatter);
    prefixField_.setText(prefs_.getString(panelName_, Properties.Keys.PLUGIN_NAME_PREFIX, "acq"));
    prefixField_.addPropertyChangeListener(new PropertyChangeListener() {
        @Override
        public void propertyChange(PropertyChangeEvent evt) {
            prefs_.putString(panelName_, Properties.Keys.PLUGIN_NAME_PREFIX, prefixField_.getText());
        }
    });
    prefixField_.setColumns(textFieldWidth);
    savePanel_.add(prefixField_, "span 2, wrap");

    // since we use the name field even for acquisitions in RAM, 
    // we only need to gray out the directory-related components
    final JComponent[] saveComponents = { browseRootButton, rootField_, dirRootLabel };
    PanelUtils.componentsSetEnabled(saveComponents, saveCB_.isSelected());

    saveCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(saveComponents, saveCB_.isSelected());
        }
    });

    // end save panel

    // start duration report panel

    durationPanel_ = new JPanel(new MigLayout("", "[right]6[left, 40%!]", "[]5[]"));
    durationPanel_.setBorder(PanelUtils.makeTitledBorder("Durations"));
    durationPanel_.setPreferredSize(new Dimension(125, 0)); // fix width so it doesn't constantly change depending on text

    durationPanel_.add(new JLabel("Slice:"));
    actualSlicePeriodLabel_ = new JLabel();
    durationPanel_.add(actualSlicePeriodLabel_, "wrap");

    durationPanel_.add(new JLabel("Volume:"));
    actualVolumeDurationLabel_ = new JLabel();
    durationPanel_.add(actualVolumeDurationLabel_, "wrap");

    durationPanel_.add(new JLabel("Total:"));
    actualTimeLapseDurationLabel_ = new JLabel();
    durationPanel_.add(actualTimeLapseDurationLabel_, "wrap");

    // end duration report panel

    buttonTestAcq_ = new JButton("Test Acquisition");
    buttonTestAcq_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            runTestAcquisition(Devices.Sides.NONE);
        }
    });

    buttonStart_ = new JToggleButton();
    buttonStart_.setIconTextGap(6);
    buttonStart_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            if (isAcquisitionRequested()) {
                stopAcquisition();
            } else {
                runAcquisition();
            }
        }
    });
    updateStartButton(); // call once to initialize, isSelected() will be false

    // make the size of the test button match the start button (easier on the eye)
    Dimension sizeStart = buttonStart_.getPreferredSize();
    Dimension sizeTest = buttonTestAcq_.getPreferredSize();
    sizeTest.height = sizeStart.height;
    buttonTestAcq_.setPreferredSize(sizeTest);

    acquisitionStatusLabel_ = new JLabel("");
    acquisitionStatusLabel_.setBackground(prefixField_.getBackground());
    acquisitionStatusLabel_.setOpaque(true);
    updateAcquisitionStatus(AcquisitionStatus.NONE);

    // Channel Panel (separate file for code)
    multiChannelPanel_ = new MultiChannelSubPanel(gui, devices_, props_, prefs_);
    multiChannelPanel_.addDurationLabelListener(this);

    // Position Panel
    final JPanel positionPanel = new JPanel();
    positionPanel.setLayout(new MigLayout("flowx, fillx", "[right]10[left][10][]", "[]8[]"));
    usePositionsCB_ = pu.makeCheckBox("Multiple positions (XY)", Properties.Keys.PREFS_USE_MULTIPOSITION,
            panelName_, false);
    usePositionsCB_.setToolTipText("Acquire datasest at multiple postions");
    usePositionsCB_.setEnabled(true);
    usePositionsCB_.setFocusPainted(false);
    componentBorder = new ComponentTitledBorder(usePositionsCB_, positionPanel,
            BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
    positionPanel.setBorder(componentBorder);

    usePositionsCB_.addChangeListener(recalculateTimingDisplayCL);

    final JButton editPositionListButton = new JButton("Edit position list...");
    editPositionListButton.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            gui_.showXYPositionList();
        }
    });
    positionPanel.add(editPositionListButton);

    gridButton_ = new JButton("XYZ grid...");
    positionPanel.add(gridButton_, "wrap");

    // start XYZ grid frame
    // visibility of this frame is controlled from XYZ grid button
    // this frame is separate from main plugin window

    gridXPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));

    useXGridCB_ = pu.makeCheckBox("Slices from stage coordinates", Properties.Keys.PREFS_USE_X_GRID, panelName_,
            true);
    useXGridCB_.setEnabled(true);
    useXGridCB_.setFocusPainted(false);
    componentBorder = new ComponentTitledBorder(useXGridCB_, gridXPanel_,
            BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
    gridXPanel_.setBorder(componentBorder);

    // enable/disable panel elements depending on checkbox state
    useXGridCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(gridXPanel_, useXGridCB_.isSelected());
        }
    });

    gridXPanel_.add(new JLabel("X start [um]:"));
    gridXStartField_ = pu.makeFloatEntryField(panelName_, "Grid_X_Start", -400, 5);
    gridXStartField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridXCount();
        }
    });
    gridXPanel_.add(gridXStartField_);
    JButton tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridXStartField_.setValue(positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.X));
            updateGridXCount();
        }
    });
    gridXPanel_.add(tmp_but, "wrap");

    gridXPanel_.add(new JLabel("X stop [um]:"));
    gridXStopField_ = pu.makeFloatEntryField(panelName_, "Grid_X_Stop", 400, 5);
    gridXStopField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridXCount();
        }
    });
    gridXPanel_.add(gridXStopField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridXStopField_.setValue(positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.X));
            updateGridXCount();
        }
    });
    gridXPanel_.add(tmp_but, "wrap");

    gridXPanel_.add(new JLabel("X delta [um]:"));
    gridXDeltaField_ = pu.makeFloatEntryField(panelName_, "Grid_X_Delta", 3, 5);
    gridXDeltaField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridXCount();
        }
    });
    gridXPanel_.add(gridXDeltaField_, "wrap");
    //      tmp_but = new JButton("Set");
    //      tmp_but.setBackground(Color.red);
    //      tmp_but.addActionListener(new ActionListener() {
    //         @Override
    //         public void actionPerformed(ActionEvent arg0) {
    //            // TODO figure out spacing, maybe to make reslicing trivial
    //            updateGridXCount();
    //         }
    //      });
    //      gridPanel_.add(tmp_but, "wrap");

    gridXPanel_.add(new JLabel("Slice count:"));
    gridXCount_ = new JLabel("");
    gridXPanel_.add(gridXCount_, "wrap");
    updateGridXCount();
    PanelUtils.componentsSetEnabled(gridXPanel_, useXGridCB_.isSelected()); // initialize

    gridYPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));

    useYGridCB_ = pu.makeCheckBox("Grid in Y", Properties.Keys.PREFS_USE_Y_GRID, panelName_, true);
    useYGridCB_.setEnabled(true);
    useYGridCB_.setFocusPainted(false);
    componentBorder = new ComponentTitledBorder(useYGridCB_, gridYPanel_,
            BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
    gridYPanel_.setBorder(componentBorder);

    // enable/disable panel elements depending on checkbox state
    useYGridCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(gridYPanel_, useYGridCB_.isSelected());
        }
    });

    gridYPanel_.add(new JLabel("Y start [um]:"));
    gridYStartField_ = pu.makeFloatEntryField(panelName_, "Grid_Y_Start", -1200, 5);
    gridYStartField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridYCount();
        }
    });
    gridYPanel_.add(gridYStartField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridYStartField_.setValue(positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.Y));
            updateGridYCount();
        }
    });
    gridYPanel_.add(tmp_but, "wrap");

    gridYPanel_.add(new JLabel("Y stop [um]:"));
    gridYStopField_ = pu.makeFloatEntryField(panelName_, "Grid_Y_Stop", 1200, 5);
    gridYStopField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridYCount();
        }
    });
    gridYPanel_.add(gridYStopField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridYStopField_.setValue(positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.Y));
            updateGridYCount();
        }
    });
    gridYPanel_.add(tmp_but, "wrap");

    gridYPanel_.add(new JLabel("Y delta [um]:"));
    gridYDeltaField_ = pu.makeFloatEntryField(panelName_, "Grid_Y_Delta", 700, 5);
    gridYDeltaField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridYCount();
        }
    });
    gridYPanel_.add(gridYDeltaField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            Devices.Keys camKey = isFirstSideA() ? Devices.Keys.CAMERAA : Devices.Keys.CAMERAB;
            int height;
            try {
                height = core_.getROI(devices_.getMMDevice(camKey)).height;
            } catch (Exception e) {
                height = 1;
            }
            float pixelSize = (float) core_.getPixelSizeUm();
            double delta = height * pixelSize;
            double overlap = props_.getPropValueFloat(Devices.Keys.PLUGIN,
                    Properties.Keys.PLUGIN_GRID_OVERLAP_PERCENT);
            delta *= (1 - overlap / 100);
            // sanity checks, would be better handled with exceptions or more formal checks
            if (height > 4100 || height < 4 || pixelSize < 1e-6) {
                return;
            }
            gridYDeltaField_.setValue(Math.round(delta));
            updateGridYCount();
        }
    });
    gridYPanel_.add(tmp_but, "wrap");

    gridYPanel_.add(new JLabel("Y count:"));
    gridYCount_ = new JLabel("");
    gridYPanel_.add(gridYCount_, "wrap");
    updateGridYCount();
    PanelUtils.componentsSetEnabled(gridYPanel_, useYGridCB_.isSelected()); // initialize

    gridZPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));

    useZGridCB_ = pu.makeCheckBox("Grid in Z", Properties.Keys.PREFS_USE_Z_GRID, panelName_, true);
    useZGridCB_.setEnabled(true);
    useZGridCB_.setFocusPainted(false);
    componentBorder = new ComponentTitledBorder(useZGridCB_, gridZPanel_,
            BorderFactory.createLineBorder(ASIdiSPIM.borderColor));
    gridZPanel_.setBorder(componentBorder);

    // enable/disable panel elements depending on checkbox state
    useZGridCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(gridZPanel_, useZGridCB_.isSelected());
        }
    });

    gridZPanel_.add(new JLabel("Z start [um]:"));
    gridZStartField_ = pu.makeFloatEntryField(panelName_, "Grid_Z_Start", 0, 5);
    gridZStartField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridZCount();
        }
    });
    gridZPanel_.add(gridZStartField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridZStartField_.setValue(positions_.getUpdatedPosition(Devices.Keys.UPPERZDRIVE));
            updateGridZCount();
        }
    });
    gridZPanel_.add(tmp_but, "wrap");

    gridZPanel_.add(new JLabel("Z stop [um]:"));
    gridZStopField_ = pu.makeFloatEntryField(panelName_, "Grid_Z_Stop", -800, 5);
    gridZStopField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridZCount();
        }
    });
    gridZPanel_.add(gridZStopField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            gridZStopField_.setValue(positions_.getUpdatedPosition(Devices.Keys.UPPERZDRIVE));
            updateGridZCount();
        }
    });
    gridZPanel_.add(tmp_but, "wrap");

    gridZPanel_.add(new JLabel("Z delta [um]:"));
    gridZDeltaField_ = pu.makeFloatEntryField(panelName_, "Grid_Z_Delta", 400, 5);
    gridZDeltaField_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            updateGridZCount();
        }
    });
    gridZPanel_.add(gridZDeltaField_);
    tmp_but = new JButton("Set");
    tmp_but.setBackground(Color.red);
    tmp_but.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            Devices.Keys camKey = isFirstSideA() ? Devices.Keys.CAMERAA : Devices.Keys.CAMERAB;
            int width;
            try {
                width = core_.getROI(devices_.getMMDevice(camKey)).width;
            } catch (Exception e) {
                width = 1;
            }
            float pixelSize = (float) core_.getPixelSizeUm();
            // sanity checks, would be better handled with exceptions or more formal checks
            if (width > 4100 || width < 4 || pixelSize < 1e-6) {
                return;
            }
            double delta = width * pixelSize / Math.sqrt(2);
            double overlap = props_.getPropValueFloat(Devices.Keys.PLUGIN,
                    Properties.Keys.PLUGIN_GRID_OVERLAP_PERCENT);
            delta *= (1 - overlap / 100);
            gridZDeltaField_.setValue(Math.round(delta));
            updateGridZCount();
        }
    });
    gridZPanel_.add(tmp_but, "wrap");

    gridZPanel_.add(new JLabel("Z count:"));
    gridZCount_ = new JLabel("");
    gridZPanel_.add(gridZCount_, "wrap");
    updateGridZCount();
    PanelUtils.componentsSetEnabled(gridZPanel_, useZGridCB_.isSelected()); // initialize

    gridSettingsPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));

    gridSettingsPanel_.setBorder(PanelUtils.makeTitledBorder("Grid settings"));
    gridSettingsPanel_.add(new JLabel("Overlap (Y and Z) [%]:"));
    JSpinner tileOverlapPercent = pu.makeSpinnerFloat(0, 100, 1, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_GRID_OVERLAP_PERCENT, 10);
    gridSettingsPanel_.add(tileOverlapPercent, "wrap");
    clearYZGridCB_ = pu.makeCheckBox("Clear position list if YZ unused", Properties.Keys.PREFS_CLEAR_YZ_GRID,
            panelName_, true);
    gridSettingsPanel_.add(clearYZGridCB_, "span 2");

    computeGridButton_ = new JButton("Compute grid");
    computeGridButton_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent arg0) {
            final boolean useX = useXGridCB_.isSelected();
            final boolean useY = useYGridCB_.isSelected();
            final boolean useZ = useZGridCB_.isSelected();
            final int numX = useX ? updateGridXCount() : 1;
            final int numY = useY ? updateGridYCount() : 1;
            final int numZ = useZ ? updateGridZCount() : 1;
            double centerX = (((Double) gridXStartField_.getValue()) + ((Double) gridXStopField_.getValue()))
                    / 2;
            double centerY = (((Double) gridYStartField_.getValue()) + ((Double) gridYStopField_.getValue()))
                    / 2;
            double centerZ = (((Double) gridZStartField_.getValue()) + ((Double) gridZStopField_.getValue()))
                    / 2;
            double deltaX = (Double) gridXDeltaField_.getValue();
            double deltaY = (Double) gridYDeltaField_.getValue();
            double deltaZ = (Double) gridZDeltaField_.getValue();
            double startY = centerY - deltaY * (numY - 1) / 2;
            double startZ = centerZ - deltaZ * (numZ - 1) / 2;
            String xy_device = devices_.getMMDevice(Devices.Keys.XYSTAGE);
            String z_device = devices_.getMMDevice(Devices.Keys.UPPERZDRIVE);

            if (useX) {
                try {
                    setVolumeSliceStepSize(Math.abs(deltaX) / Math.sqrt(2));
                    setVolumeSlicesPerVolume(numX);
                    if (!useY && !useZ) {
                        // move to X center if we aren't generating position list with it
                        positions_.setPosition(Devices.Keys.XYSTAGE, Directions.X, centerX);
                    }
                } catch (Exception ex) {
                    // not sure what to do in case of error so ignore
                }
            } else {
                // use current X value as center; this was original behavior
                centerX = positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.X);
            }

            // if we aren't using one axis, use the current position instead of GUI position
            if (useY && !useZ) {
                startZ = positions_.getUpdatedPosition(Devices.Keys.UPPERZDRIVE);
            }
            if (useZ && !useY) {
                startY = positions_.getUpdatedPosition(Devices.Keys.XYSTAGE, Directions.Y);
            }

            if (!useY && !useZ && !clearYZGridCB_.isSelected()) {
                return;
            }

            PositionList pl;
            try {
                pl = gui_.getPositionList();
            } catch (MMScriptException e) {
                pl = new PositionList();
            }
            boolean isPositionListEmpty = pl.getNumberOfPositions() == 0;
            if (!isPositionListEmpty) {
                boolean overwrite = MyDialogUtils.getConfirmDialogResult(
                        "Do you really want to overwrite the existing position list?",
                        JOptionPane.YES_NO_OPTION);
                if (!overwrite) {
                    return; // nothing to do
                }
            }
            pl = new PositionList();
            if (useY || useZ) {
                for (int iZ = 0; iZ < numZ; ++iZ) {
                    for (int iY = 0; iY < numY; ++iY) {
                        MultiStagePosition msp = new MultiStagePosition();
                        StagePosition s = new StagePosition();
                        s.stageName = xy_device;
                        s.numAxes = 2;
                        s.x = centerX;
                        s.y = startY + iY * deltaY;
                        msp.add(s);
                        StagePosition s2 = new StagePosition();
                        s2.stageName = z_device;
                        s2.x = startZ + iZ * deltaZ;
                        msp.add(s2);
                        msp.setLabel("Pos_" + iZ + "_" + iY);
                        pl.addPosition(msp);
                    }
                }
            }
            try {
                gui_.setPositionList(pl);
            } catch (MMScriptException ex) {
                MyDialogUtils.showError(ex, "Couldn't overwrite position list with generated YZ grid");
            }
        }
    });

    gridFrame_ = new MMFrame();
    gridFrame_.setTitle("XYZ Grid");
    gridFrame_.loadPosition(100, 100);

    gridPanel_ = new JPanel(new MigLayout("", "[right]10[center]", "[]8[]"));
    gridFrame_.add(gridPanel_);

    class GridFrameAdapter extends WindowAdapter {
        @Override
        public void windowClosing(WindowEvent e) {
            gridButton_.setSelected(false);
            gridFrame_.savePosition();
        }
    }

    gridFrame_.addWindowListener(new GridFrameAdapter());

    gridButton_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            gridFrame_.setVisible(true);
        }
    });

    gridPanel_.add(gridYPanel_);
    gridPanel_.add(gridZPanel_, "wrap");
    gridPanel_.add(gridXPanel_, "spany 2");
    gridPanel_.add(gridSettingsPanel_, "growx, wrap");
    gridPanel_.add(computeGridButton_, "growx, growy");
    gridFrame_.pack();
    gridFrame_.setResizable(false);

    // end YZ grid frame

    positionPanel.add(new JLabel("Post-move delay [ms]:"));
    positionDelay_ = pu.makeSpinnerFloat(0.0, 10000.0, 100.0, Devices.Keys.PLUGIN,
            Properties.Keys.PLUGIN_POSITION_DELAY, 0.0);
    positionPanel.add(positionDelay_, "wrap");

    // enable/disable panel elements depending on checkbox state
    usePositionsCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            PanelUtils.componentsSetEnabled(positionPanel, usePositionsCB_.isSelected());
            gridButton_.setEnabled(true); // leave this always enabled
        }
    });
    PanelUtils.componentsSetEnabled(positionPanel, usePositionsCB_.isSelected()); // initialize
    gridButton_.setEnabled(true); // leave this always enabled

    // end of Position panel

    // checkbox to use navigation joystick settings or not
    // an "orphan" UI element
    navigationJoysticksCB_ = new JCheckBox("Use Navigation joystick settings");
    navigationJoysticksCB_
            .setSelected(prefs_.getBoolean(panelName_, Properties.Keys.PLUGIN_USE_NAVIGATION_JOYSTICKS, false));
    navigationJoysticksCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            updateJoysticks();
            prefs_.putBoolean(panelName_, Properties.Keys.PLUGIN_USE_NAVIGATION_JOYSTICKS,
                    navigationJoysticksCB_.isSelected());
        }
    });

    // checkbox to signal that autofocus should be used during acquisition
    // another orphan UI element
    useAutofocusCB_ = new JCheckBox("Autofocus periodically");
    useAutofocusCB_
            .setSelected(prefs_.getBoolean(panelName_, Properties.Keys.PLUGIN_ACQUSITION_USE_AUTOFOCUS, false));
    useAutofocusCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            prefs_.putBoolean(panelName_, Properties.Keys.PLUGIN_ACQUSITION_USE_AUTOFOCUS,
                    useAutofocusCB_.isSelected());
        }
    });

    // checkbox to signal that movement should be corrected during acquisition
    // Yet another orphan UI element
    useMovementCorrectionCB_ = new JCheckBox("Motion correction");
    useMovementCorrectionCB_.setSelected(
            prefs_.getBoolean(panelName_, Properties.Keys.PLUGIN_ACQUSITION_USE_MOVEMENT_CORRECTION, false));
    useMovementCorrectionCB_.addActionListener(new ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            prefs_.putBoolean(panelName_, Properties.Keys.PLUGIN_ACQUSITION_USE_MOVEMENT_CORRECTION,
                    useMovementCorrectionCB_.isSelected());
        }
    });

    // set up tabbed panels for GUI
    // make 3 columns as own JPanels to get vertical space right
    // in each column without dependencies on other columns

    leftColumnPanel_ = new JPanel(new MigLayout("", "[]", "[]6[]10[]10[]"));

    leftColumnPanel_.add(durationPanel_, "split 2");
    leftColumnPanel_.add(timepointPanel_, "wrap, growx");
    leftColumnPanel_.add(savePanel_, "wrap");
    leftColumnPanel_.add(new JLabel("Acquisition mode: "), "split 2, right");
    AcquisitionModes acqModes = new AcquisitionModes(devices_, prefs_);
    spimMode_ = acqModes.getComboBox();
    spimMode_.addActionListener(recalculateTimingDisplayAL);
    leftColumnPanel_.add(spimMode_, "left, wrap");
    leftColumnPanel_.add(buttonStart_, "split 3, left");
    leftColumnPanel_.add(new JLabel("    "));
    leftColumnPanel_.add(buttonTestAcq_, "wrap");
    leftColumnPanel_.add(new JLabel("Status:"), "split 2, left");
    leftColumnPanel_.add(acquisitionStatusLabel_);

    centerColumnPanel_ = new JPanel(new MigLayout("", "[]", "[]"));

    centerColumnPanel_.add(positionPanel, "growx, wrap");
    centerColumnPanel_.add(multiChannelPanel_, "wrap");
    centerColumnPanel_.add(navigationJoysticksCB_, "wrap");
    centerColumnPanel_.add(useAutofocusCB_, "split 2");
    centerColumnPanel_.add(useMovementCorrectionCB_);

    rightColumnPanel_ = new JPanel(new MigLayout("", "[center]0", "[]0[]"));

    rightColumnPanel_.add(volPanel_, "growx, wrap");
    rightColumnPanel_.add(slicePanel_, "growx");

    // add the column panels to the main panel
    super.add(leftColumnPanel_);
    super.add(centerColumnPanel_);
    super.add(rightColumnPanel_);

    // properly initialize the advanced slice timing
    advancedSliceTimingCB_.addItemListener(sliceTimingDisableGUIInputs);
    sliceTimingDisableGUIInputs.itemStateChanged(null);
    advancedSliceTimingCB_.addActionListener(showAdvancedTimingFrame);

    // included is calculating slice timing
    updateDurationLabels();

    // update local variables
    zStepUm_ = PanelUtils.getSpinnerFloatValue(stepSize_);
    refreshXYZPositions();

}

From source file:org.photovault.swingui.PhotoInfoEditor.java

protected void createTechDataUI() {
    JPanel pane = new JPanel();
    tabPane.addTab("Tech data", pane);

    JLabel cameraMakerLabel = new JLabel("Camera make");
    JTextField cameraMakerField = createMvTextField("cameraMaker", 20);
    // cameraDoc = cameraField.getDocument();

    JLabel cameraLabel = new JLabel("Camera model");
    cameraField = createMvTextField("camera", 20);
    cameraDoc = cameraField.getDocument();

    JLabel lensLabel = new JLabel("Lens");
    lensField = createMvTextField("lens", 20);
    lensDoc = lensField.getDocument();// ww  w.  jav  a2s.  c om

    JLabel filmLabel = new JLabel("Film");
    filmField = createMvTextField("film", 20);
    filmDoc = filmField.getDocument();

    JLabel filmSpeedLabel = new JLabel("Film speed");
    NumberFormatter filmSpeedFormatter = new NumberFormatter(new DecimalFormat("#########0"));
    filmSpeedFormatter.setValueClass(PhotoInfoFields.FILM_SPEED.getType());
    filmSpeedField = new JFormattedTextField(filmSpeedFormatter);

    filmSpeedField.setColumns(5);
    filmSpeedField.addPropertyChangeListener(this);
    filmSpeedField.putClientProperty(FIELD, PhotoInfoFields.FILM_SPEED);

    JLabel shutterSpeedLabel = new JLabel("Shutter speed");
    DecimalFormat shutterSpeedFormat = new DecimalFormat("###0.####");
    NumberFormatter shutterSpeedFormatter = new NumberFormatter(shutterSpeedFormat);
    shutterSpeedFormatter.setValueClass(PhotoInfoFields.SHUTTER_SPEED.getType());
    shutterSpeedField = new JFormattedTextField(shutterSpeedFormatter);
    shutterSpeedField.setColumns(5);
    shutterSpeedField.addPropertyChangeListener(this);
    shutterSpeedField.putClientProperty(FIELD, PhotoInfoFields.SHUTTER_SPEED);

    JLabel fStopLabel = new JLabel("F-stop");
    DecimalFormat fStopFormat = new DecimalFormat("#0.#");
    NumberFormatter fStopFormatter = new NumberFormatter(fStopFormat);
    fStopFormatter.setValueClass(PhotoInfoFields.FSTOP.getType());
    fStopField = new JFormattedTextField(fStopFormatter);
    fStopField.setColumns(5);
    fStopField.addPropertyChangeListener(this);
    fStopField.putClientProperty(FIELD, PhotoInfoFields.FSTOP);

    JLabel focalLengthLabel = new JLabel("Focal length");
    NumberFormatter focalLengthFormatter = new NumberFormatter(new DecimalFormat("#######0.#"));
    focalLengthFormatter.setValueClass(PhotoInfoFields.FSTOP.getType());
    focalLengthField = new JFormattedTextField(focalLengthFormatter);
    focalLengthField.setColumns(5);
    focalLengthField.addPropertyChangeListener(this);
    focalLengthField.putClientProperty(FIELD, PhotoInfoFields.FOCAL_LENGTH);

    // Tech note text
    JLabel notesLabel = new JLabel("Tech. notes");
    technoteTextArea = new JTextArea(5, 40);
    technoteTextArea.setLineWrap(true);
    technoteTextArea.setWrapStyleWord(true);
    JScrollPane technoteScrollPane = new JScrollPane(technoteTextArea);
    technoteScrollPane.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_ALWAYS);
    Border technoteBorder = BorderFactory.createEtchedBorder(EtchedBorder.LOWERED);
    technoteBorder = BorderFactory.createTitledBorder(technoteBorder, "Description");
    technoteScrollPane.setBorder(technoteBorder);
    technoteDoc = technoteTextArea.getDocument();
    technoteDoc.putProperty(FIELD, PhotoInfoFields.TECH_NOTES);
    technoteDoc.addDocumentListener(this);

    // Lay out the created controls
    GridBagLayout layout = new GridBagLayout();
    GridBagConstraints c = new GridBagConstraints();
    pane.setLayout(layout);
    JLabel[] labels = { cameraMakerLabel, cameraLabel, lensLabel, focalLengthLabel, filmLabel, filmSpeedLabel,
            shutterSpeedLabel, fStopLabel };
    JTextField[] fields = { cameraMakerField, cameraField, lensField, focalLengthField, filmField,
            filmSpeedField, shutterSpeedField, fStopField };
    addLabelTextRows(labels, fields, layout, pane);
    pane.add(technoteScrollPane);
    c.gridwidth = GridBagConstraints.REMAINDER;
    c.weighty = 0.5;
    c.fill = GridBagConstraints.BOTH;
    layout.setConstraints(technoteScrollPane, c);
}

From source file:org.yccheok.jstock.gui.NewBuyTransactionJDialog.java

private JFormattedTextField getCurrencyJFormattedTextField() {
    NumberFormat format = NumberFormat.getNumberInstance();
    format.setMaximumFractionDigits(4);//from   w  ww .java2s. c o m
    NumberFormatter formatter = new NumberFormatter(format);
    formatter.setMinimum(0.0);
    formatter.setValueClass(Double.class);
    JFormattedTextField formattedTextField = new JFormattedTextField(formatter);
    formattedTextField.addMouseListener(getJFormattedTextFieldMouseListener());
    return formattedTextField;
}

From source file:org.yccheok.jstock.gui.NewSellTransactionJDialog.java

private JFormattedTextField getPercentageJFormattedTextField() {
    NumberFormat format = NumberFormat.getNumberInstance();
    format.setMaximumFractionDigits(2);//from ww w .  j  a  v a  2  s . c o  m
    format.setMinimumFractionDigits(2);
    NumberFormatter formatter = new NumberFormatter(format);
    formatter.setValueClass(Double.class);
    JFormattedTextField formattedTextField = new JFormattedTextField(formatter);
    return formattedTextField;
}

From source file:org.yccheok.jstock.gui.NewSellTransactionJDialog.java

private JFormattedTextField getCurrencyJFormattedTextField(boolean isNegativeAllowed) {
    NumberFormat format = NumberFormat.getNumberInstance();
    format.setMaximumFractionDigits(4);//from ww  w  . ja va  2s .  c o  m
    NumberFormatter formatter = new NumberFormatter(format);

    if (isNegativeAllowed == false)
        formatter.setMinimum(0.0);
    else
        formatter.setMinimum(null);

    formatter.setValueClass(Double.class);
    JFormattedTextField formattedTextField = new JFormattedTextField(formatter);
    formattedTextField.addMouseListener(getJFormattedTextFieldMouseListener());
    return formattedTextField;
}

From source file:org.yccheok.jstock.gui.OptionsNetworkJPanel.java

private JFormattedTextField getPortNumberJFormattedTextField() {
    DecimalFormat df = new DecimalFormat("#####");
    NumberFormatter nf = new NumberFormatter(df) {
        @Override/*w ww .j ava2  s .c om*/
        public String valueToString(Object iv) throws ParseException {
            if ((iv == null) || (((Integer) iv).intValue() == -1)) {
                return "";
            } else {
                return super.valueToString(iv);
            }
        }

        @Override
        public Object stringToValue(String text) throws ParseException {
            if ("".equals(text)) {
                return null;
            }
            return super.stringToValue(text);
        }
    };
    nf.setMinimum(0);
    nf.setMaximum(65534);
    nf.setValueClass(Integer.class);
    return new JFormattedTextField(nf);
}

From source file:org.yccheok.jstock.gui.OptionsSellAdvisorJPanel.java

private JFormattedTextField getPercentageJFormattedTextField() {
    NumberFormat format = NumberFormat.getNumberInstance();
    NumberFormatter formatter = new NumberFormatter(format);
    formatter.setMinimum(0.0);//from  www  . j  av a 2  s  . co m
    formatter.setMaximum(null);
    formatter.setValueClass(Double.class);
    JFormattedTextField field = new JFormattedTextField(formatter);

    return field;
}