List of usage examples for javax.swing JFileChooser setFileSelectionMode
@BeanProperty(preferred = true, enumerationValues = { "JFileChooser.FILES_ONLY",
"JFileChooser.DIRECTORIES_ONLY",
"JFileChooser.FILES_AND_DIRECTORIES" }, description = "Sets the types of files that the JFileChooser can choose.")
public void setFileSelectionMode(int mode)
JFileChooser to allow the user to just select files, just select directories, or select both files and directories. From source file:org.eurocarbdb.application.glycoworkbench.plugin.s3.Cockpit.java
/** * Event handler for this application, handles all menu items. *///from www .j a va 2s . c o m public void actionPerformed(ActionEvent event) { // Service Menu Events if ("LoginEvent".equals(event.getActionCommand())) { loginEvent(null); } else if ("LogoutEvent".equals(event.getActionCommand())) { logoutEvent(); } else if (event.getActionCommand() != null && event.getActionCommand().startsWith("LoginSwitch")) { String loginName = event.getActionCommand().substring("LoginSwitch:".length()); AWSCredentials awsCredentials = (AWSCredentials) loginAwsCredentialsMap.get(loginName); loginEvent(awsCredentials); } else if ("QuitEvent".equals(event.getActionCommand())) { System.exit(0); } // Bucket Events. else if ("ViewBucketProperties".equals(event.getActionCommand())) { listBucketProperties(); } else if ("RefreshBuckets".equals(event.getActionCommand())) { listAllBuckets(); } else if ("CreateBucket".equals(event.getActionCommand())) { createBucketAction(); } else if ("DeleteBucket".equals(event.getActionCommand())) { deleteSelectedBucket(); } else if ("ManageDistributions".equals(event.getActionCommand())) { S3Bucket[] buckets = bucketTableModel.getBuckets(); String[] bucketNames = new String[buckets.length]; for (int i = 0; i < buckets.length; i++) { bucketNames[i] = buckets[i].getName(); } ManageDistributionsDialog.showDialog(ownerFrame, cloudFrontService, bucketNames, this); } else if ("AddThirdPartyBucket".equals(event.getActionCommand())) { addThirdPartyBucket(); } else if ("UpdateBucketACL".equals(event.getActionCommand())) { updateBucketAccessControlList(); } else if ("UpdateBucketRequesterPaysStatus".equals(event.getActionCommand())) { updateBucketRequesterPaysSetting(); } // Object Events else if ("ViewOrModifyObjectAttributes".equals(event.getActionCommand())) { displayObjectsAttributesDialog(); } else if ("CopyObjects".equals(event.getActionCommand())) { copyObjects(); } else if ("RefreshObjects".equals(event.getActionCommand())) { listObjects(); } else if ("UpdateObjectACL".equals(event.getActionCommand())) { displayAclModificationDialog(); } else if ("GeneratePublicGetURLs".equals(event.getActionCommand())) { generatePublicGetUrls(); } else if ("GenerateTorrentURL".equals(event.getActionCommand())) { generateTorrentUrl(); } else if ("DeleteObjects".equals(event.getActionCommand())) { deleteSelectedObjects(); } else if ("DownloadObjects".equals(event.getActionCommand())) { downloadSelectedObjects(); } else if ("UploadFiles".equals(event.getActionCommand())) { JFileChooser fileChooser = new JFileChooser(); fileChooser.setMultiSelectionEnabled(true); fileChooser.setDialogTitle("Choose files to upload"); fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); fileChooser.setApproveButtonText("Upload files"); fileChooser.setCurrentDirectory(fileChoosersLastUploadDirectory); int returnVal = fileChooser.showOpenDialog(ownerFrame); if (returnVal != JFileChooser.APPROVE_OPTION) { return; } final File[] uploadFiles = fileChooser.getSelectedFiles(); if (uploadFiles.length == 0) { return; } // Save the chosen directory location for next time. fileChoosersLastUploadDirectory = uploadFiles[0].getParentFile(); uploadFiles(uploadFiles); } else if (event.getSource().equals(filterObjectsCheckBox)) { if (filterObjectsCheckBox.isSelected()) { filterObjectsPanel.setVisible(true); } else { filterObjectsPanel.setVisible(false); filterObjectsPrefix.setText(""); if (filterObjectsDelimiter.getSelectedIndex() != 0) { filterObjectsDelimiter.setSelectedIndex(0); } } } // Tools events else if ("BucketLogging".equals(event.getActionCommand())) { S3Bucket[] buckets = bucketTableModel.getBuckets(); BucketLoggingDialog.showDialog(ownerFrame, s3ServiceMulti.getS3Service(), buckets, this); } // Preference Events else if ("PreferencesDialog".equals(event.getActionCommand())) { PreferencesDialog.showDialog(cockpitPreferences, ownerFrame, this); // Save a user's preferences if requested, otherwise wipe any existing preferences file. File cockpitPreferencesPropertiesFile = new File(cockpitHomeDirectory, Constants.COCKPIT_PROPERTIES_FILENAME); if (cockpitPreferences.isRememberPreferences()) { try { Properties properties = cockpitPreferences.toProperties(); if (!cockpitHomeDirectory.exists()) { cockpitHomeDirectory.mkdir(); } properties.list(new PrintStream(new FileOutputStream(cockpitPreferencesPropertiesFile))); } catch (IOException e) { String message = "Unable to save your preferences"; log.error(message, e); ErrorDialog.showDialog(ownerFrame, this, message, e); } } else if (cockpitPreferencesPropertiesFile.exists()) { // User elected not to store preferences, delete the existing preferences file. cockpitPreferencesPropertiesFile.delete(); } if (cockpitPreferences.isEncryptionPasswordSet()) { try { encryptionUtil = new EncryptionUtil(cockpitPreferences.getEncryptionPassword(), cockpitPreferences.getEncryptionAlgorithm(), EncryptionUtil.DEFAULT_VERSION); } catch (Exception e) { String message = "Unable to start encryption utility"; log.error(message, e); ErrorDialog.showDialog(ownerFrame, this, message, e); } } else { encryptionUtil = null; } } // Ooops... else { log.debug("Unrecognised ActionEvent command '" + event.getActionCommand() + "' in " + event); } }
From source file:org.eurocarbdb.application.glycoworkbench.plugin.s3.Cockpit.java
/** * Downloads the objects currently selected in the objects table. The user is * prompted//from w w w. j av a 2 s . c o m * Prepares to perform a download of objects from S3 by prompting the user for a directory * to store the files in, then performing the download. * * @throws IOException */ private void downloadSelectedObjects() { // Prompt user to choose directory location for downloaded files (or cancel download altogether) JFileChooser fileChooser = new JFileChooser(); fileChooser.setDialogTitle("Choose directory to save S3 files in"); fileChooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); fileChooser.setMultiSelectionEnabled(false); fileChooser.setSelectedFile(downloadDirectory); int returnVal = fileChooser.showDialog(ownerFrame, "Choose Directory"); if (returnVal != JFileChooser.APPROVE_OPTION) { return; } downloadDirectory = fileChooser.getSelectedFile(); // Find clashing files final Map filesAlreadyInDownloadDirectoryMap = new HashMap(); S3Object[] objectsForDownload = getSelectedObjects(); for (int i = 0; i < objectsForDownload.length; i++) { File file = new File(downloadDirectory, objectsForDownload[i].getKey()); if (file.exists()) { filesAlreadyInDownloadDirectoryMap.put(objectsForDownload[i].getKey(), file); } } // Build map of S3 Objects being downloaded. final Map s3DownloadObjectsMap = FileComparer.getInstance().populateS3ObjectMap("", objectsForDownload); final HyperlinkActivatedListener hyperlinkListener = this; runInBackgroundThread(new Runnable() { public void run() { // Retrieve details of objects for download if (!retrieveObjectsDetails(getSelectedObjects())) { return; } try { final FileComparerResults comparisonResults = compareRemoteAndLocalFiles( filesAlreadyInDownloadDirectoryMap, s3DownloadObjectsMap); DownloadPackage[] downloadPackages = buildDownloadPackageList(comparisonResults, s3DownloadObjectsMap); if (downloadPackages == null) { return; } s3ServiceMulti.downloadObjects(currentSelectedBucket, downloadPackages); } catch (final Exception e) { runInDispatcherThreadImmediately(new Runnable() { public void run() { String message = "Unable to download objects"; log.error(message, e); ErrorDialog.showDialog(ownerFrame, hyperlinkListener, message, e); } }); } } }); }
From source file:org.eurocarbdb.application.glycoworkbench.plugin.s3.gui.LoginLocalFolderPanel.java
private void chooseFolder() { // Prompt user to choose their Cockpit home directory. JFileChooser fileChooser = new JFileChooser(); fileChooser.setAcceptAllFileFilterUsed(true); fileChooser.setDialogTitle("Choose Cockpit Home Folder"); fileChooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); fileChooser.setApproveButtonText("Choose Folder"); fileChooser.setCurrentDirectory(cockpitHomeFolder); int returnVal = fileChooser.showOpenDialog(ownerFrame); if (returnVal != JFileChooser.APPROVE_OPTION) { return;//from w ww .j a v a 2 s .c o m } else { this.cockpitHomeFolder = fileChooser.getSelectedFile(); this.folderPathTextField.setText(this.cockpitHomeFolder.getAbsolutePath()); refreshStoredCredentialsTable(); } }
From source file:org.fhaes.analysis.FHInterval.java
/** * Actually perform the analysis.//from w w w. j av a 2 s . c o m */ @SuppressWarnings("deprecation") private void doAnalysis() { log.debug("INPUT PARAMETERS"); log.debug("inputFileArray = " + inputFileArray); log.debug("analyissType = " + analysisType); log.debug("startYear = " + startYear); log.debug("endYear = " + endYear); log.debug("fireFilterType = " + fireFilterType); log.debug("filterValue = " + filterValue); log.debug("includeIncomplete = " + includeIncomplete); log.debug("alphaLevel = " + alphaLevel); boolean highway = true; ArrayList<FHX2FileReader> myReader = new ArrayList<FHX2FileReader>(); Integer minFirstYear = new Integer(9999); Integer maxLastYear = new Integer(0); String savePath = new String(); savePath = inputFileArray[0].getAbsolutePath(); for (int i = 0; i < inputFileArray.length; i++) { myReader.add(new FHX2FileReader(inputFileArray[i])); /* * set the beginning year accounting for the filter */ if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { // myReader.get(i).makeClimate2d(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstFireYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstFireYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { // myReader.get(i).makeClimate2dII(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstInjuryYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstInjuryYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { // myReader.get(i).makeClimate2dII(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstIndicatorYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstIndicatorYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else { log.error("Unsupported event type caught"); } /* * Set the last year accounting for the filter */ if (myReader.get(i).getLastYear() > maxLastYear) { maxLastYear = myReader.get(i).getLastYear(); } if (endYear != 0) { maxLastYear = endYear; } } // end of i loop log.debug("the input filelength is " + inputFileArray.length); log.debug("The FIRST FIRE YEAR is " + minFirstYear); log.debug("The LAST YEAR is " + maxLastYear); log.debug("Minimum and Maximum years are " + minFirstYear + " " + maxLastYear); /* * set the format for the output of the numbers to 2 decimal formats */ DecimalFormat twoPlace = new DecimalFormat("0.00"); DecimalFormat threePlace = new DecimalFormat("0.000"); /* * Calculate the listYears the common years where the files will be analyzed */ ArrayList<Integer> listYears = new ArrayList<Integer>(); for (int i = 0; i < maxLastYear - minFirstYear + 1; i++) { listYears.add(minFirstYear + i); } /* * create arraylist need for the Interval Analysis */ ArrayList<ArrayList<Integer>> climateMatrixSite = new ArrayList<ArrayList<Integer>>(); ArrayList<ArrayList<Double>> filterMatrix = new ArrayList<ArrayList<Double>>(); ArrayList<Integer> climateVector = new ArrayList<Integer>(); ArrayList<ArrayList<Double>> climateVectorFilter2 = new ArrayList<ArrayList<Double>>(); // ArrayList<Double> fireintervalspersite = new ArrayList<Double>(); ArrayList<Integer> climateVectorActualSite = null; ArrayList<Double> filterVectorActual = null; ArrayList<Integer> climateYear = new ArrayList<Integer>(); ArrayList<Integer> minSampleFilter = null; ArrayList<Double> percentOfRecordingfilter = null; Double[] Dfireintervalspersite; double[] dfireintervalspersite; String[] statsparam = new String[22]; if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean fire interval"; statsparam[2] = "Median fire interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Fire frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire interval"; statsparam[9] = "Maximum fire interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull fire frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean indicator interval"; statsparam[2] = "Median indicator interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Indicator frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire interval"; statsparam[9] = "Maximum indicator interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull indicator frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean fire and other indicator interval"; statsparam[2] = "Median fire and other indicator interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Fire and other indicator frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire and other indicator interval"; statsparam[9] = "Maximum fire interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull indicator frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else { log.error("Unsupported event type caught"); } double[] fixvalt = { 0.999, 0.99, 0.975, 0.95, 0.9, 0.875, 0.8, 0.75, 0.7, 0.667, 0.5, 0.333, 0.3, 0.25, 0.2, 0.125, 0.1, 0.05, 0.025, 0.01, 0.001 }; double[][] ExceeProbcomp = new double[fixvalt.length][myReader.size()]; double[][] ExceeProbsample = new double[fixvalt.length][myReader.size()]; // log.debug("the size of statsparam is " + // statsparam.length); double[][] summaryComp = new double[statsparam.length][myReader.size()]; double[] numberOfintervalscomp = new double[myReader.size()]; // ArrayList<ArrayList<Integer>>(); // ArrayList<ArrayList<Integer>> FIyearperSample = new // ArrayList<ArrayList<Integer>>(); ArrayList<Integer> FyearperSampletemp; ArrayList<Integer> FIyearperSampletemp; // ArrayList<Double> fireintervalspersample = new double[] numberOfintervalssamp = new double[myReader.size()]; double[][] summarySample = new double[statsparam.length][myReader.size()]; Double[] Dfireintervalspersample; double[] dfireintervalspersample; /* * Set up either of the two filters two create the binary matrix on the case of composite analysis there are two possible filters: * Number of fires and percentage of scarred trees. */ Integer firesFilter1 = new Integer(0); Double firesFilter2 = new Double(0); if (fireFilterType.equals(FireFilterType.NUMBER_OF_EVENTS)) { if (filterValue != 1) firesFilter1 = filterValue.intValue(); // log.debug("number of fires is selected is: "+ // firesFilter1); } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_ALL_TREES)) { if (filterValue != 1) firesFilter2 = filterValue / 100.0; // log.debug("percentage of fires is selected is: "+ // firesFilter2); } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { if (filterValue != 1) firesFilter2 = filterValue / 100.0; // TODO ELENA TO CHECK } else { log.error("Unknown FireFilterType"); return; } boolean[] enoughIntComp = new boolean[myReader.size()]; boolean[] enoughIntSamp = new boolean[myReader.size()]; // NEW FOR ELENA log.debug("Sample depth filter type = " + sampleDepthFilterType); log.debug("Sample depth value = " + sampleDepthFilterValue); // if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_SAMPLES)) // { // // TODO ELENA // } // else if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_RECORDER_SAMPLES)) // { // // TODO ELENA // } /* * start processing each file individually: The analysis can be done by either tree (by sample/non-binary) or by site * (composite/binary). by tree the box selected is: jCheckTree. by site the box selected is: */ for (int i = 0; i < myReader.size(); i++) { log.debug(" Starting to Process file : " + myReader.get(i).getName()); /* * get the vector Year containing the vector of year of a given fhx file load it into the array list climateYear. */ climateYear = myReader.get(i).getYearArray(); // new stuff // Create filter based on min number of samples/recorder samples int[] depths = null; if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_SAMPLES)) { depths = myReader.get(i).getSampleDepths(); log.debug("MIN_NUM_SAMPLES "); } else if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_RECORDER_SAMPLES)) { depths = myReader.get(i).getRecordingDepths(eventTypeToProcess); log.debug(" MIN_NUM_RECORDER_SAMPLES"); } else { log.error("Unknown sample depth filter type."); return; } minSampleFilter = new ArrayList<Integer>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateYear.indexOf(listYears.get(ij)) == -1) { minSampleFilter.add(-1); } else { // log.debug("the sample depth is " // + myReader.get(i).getSampleDepths()[climateYear.indexOf(listYearsComp.get(ij))]); minSampleFilter.add(new Integer(depths[climateYear.indexOf(listYears.get(ij))])); } // log.debug(" " + minSampleFilter.get(ij)); } // end new stuff /* * get filter matrix for each file. * * filters2d matrix composed of the 3 filters number of fires (total capital letter per row) total number of tree (total lower * case letter plus bars counting only after a fire) percent of scared trees total fires/total trees */ // climateVectorFilter2 = myReader.get(i).getFilterArrays(eventTypeToProcess); /* * More new stuff */ if (filterValue != 1) { /* * get both matrices: * * 2. filters2d matrix composed of the 3 filters number of fires (total capital letter per row) total number of tree (total * lower case letter plus bars counting only after a fire) percent of scared trees total fires/total trees */ climateVectorFilter2 = myReader.get(i).getFilterArrays(eventTypeToProcess); /* * if by tree analysis is selected create two matrices (array list) 1. filterMatrix containing the three filter vectors only * in between common years (so using the listYearComp array list subset of the years vector) 2. climateMatrix 2 dimensional * array list containing binary matrices restricted to the listYear list. */ if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { percentOfRecordingfilter = new ArrayList<Double>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateYear.indexOf(listYears.get(ij)) == -1) { percentOfRecordingfilter.add(-1.0); } else { if (myReader.get(i).getRecordingDepths(eventTypeToProcess)[climateYear .indexOf(listYears.get(ij))] != 0) { percentOfRecordingfilter.add(new Double( climateVectorFilter2.get(0).get(climateYear.indexOf(listYears.get(ij))) / myReader.get(i).getRecordingDepths(eventTypeToProcess)[climateYear .indexOf(listYears.get(ij))])); } else { percentOfRecordingfilter.add(-99.0); } } log.debug("PERCENTAGE_OF_RECORDING is: " + percentOfRecordingfilter.get(ij)); } } else { for (int ik = 0; ik < 3; ik++) { log.debug("filter number is: " + ik); filterVectorActual = new ArrayList<Double>(); for (int ij = 0; ij < listYears.size(); ij++) { // log.debug(" climateYear.indexOf(listYearsComp.get(j))" + // climateYear.indexOf(listYearsComp.get(ij))); // if(ik==0){log.debug("number of fires // "+climateVectorFilter2.get(0).get(climateYear.indexOf(listYears.get(ij)))+" year // "+listYearsComp.get(ij));} if (climateYear.indexOf(listYears.get(ij)) == -1) { filterVectorActual.add(-1.0); } else { filterVectorActual.add(new Double( climateVectorFilter2.get(ik).get(climateYear.indexOf(listYears.get(ij))))); } if (ik == 2) { log.debug("filteperc " + filterVectorActual.get(ij)); } } // log.debug("size of filterVectorActual is : "+filterVectorActual.size()); filterMatrix.add(filterVectorActual); // if(ik==0){log.debug("filters is: "+filter); } } // end of if-else percentageofrecording // log.debug("size of the FilterMatrix is" + filterMatrix.size()); } // end of if filters not equal to 1 /* * end of more new stuff */ /* * * 1. Create the filterMatrix containing the tree filter vectors only in between common years (so using the listYearComp array * list subset of the years vector) */ // for (int ik = 0; ik < 3; ik++) // { // filterVectorActual = new ArrayList<Double>(); // for (int ij = 0; ij < listYears.size(); ij++) // { // if (climateYear.indexOf(listYears.get(ij)) == -1) // { // filterVectorActual.add(-1.0); // } // else // { // filterVectorActual.add(new Double(climateVectorFilter2.get(ik).get(climateYear.indexOf(listYears.get(ij))))); // } // } /* * ArrayList filterMatrix containes the filter matrix for each of the files */ // filterMatrix.add(filterVectorActual); // }//end of creating the filter matrix. /* * get matrix climate binary matrix by site (binary analysis) if Composite is selected. */ // if ((doComposite)&&(!jTextOfFires.getText().equals("1"))){ if (analysisType.equals(AnalysisType.COMPOSITE)) { log.debug("inside the comp"); // System.out.println("inside the comp " + " working on file "+ myReader.get(i).getName() ); if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { climateVector = myReader.get(i).getFireEventsArray(); } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { climateVector = myReader.get(i).getOtherInjuriesArray(); } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { climateVector = myReader.get(i).getFiresAndInjuriesArray(); } else { log.error("Unsupported event type caught"); } climateVectorActualSite = new ArrayList<Integer>(); for (int j = 0; j < listYears.size(); j++) { if (climateYear.indexOf(listYears.get(j)) == -1) { climateVectorActualSite.add(-1); } else { if (minSampleFilter.get(j).intValue() >= sampleDepthFilterValue.intValue()) { if (filterValue != 1) { if (fireFilterType.equals(FireFilterType.NUMBER_OF_EVENTS)) { // log.debug("fire filter: "+firesFilter1+" year is: "+listYears.get(j) // +" fires: "+filterMatrix.get(3*i).get(j)+" climatevector: // "+climateVector.get(climateYear.indexOf(listYears.get(j)))); if ((filterMatrix.get(3 * i).get(j) < firesFilter1) && (climateVector.get(climateYear.indexOf(listYears.get(j)))) != -1.0) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_ALL_TREES)) { // log.debug("percent of fires is selected is: "+ // firesFilter2+" "+climateVector.get(climateYear.indexOf(listYearsComp.get(j)))); // log.debug("the filter percent of fires is"+filterMatrix.get((3*i+2)).get(j)); if ((filterMatrix.get(3 * i + 2).get(j) == -99)) { climateVectorActualSite.add(-1); } else { if ((filterMatrix.get(3 * i + 2).get(j) < firesFilter2) && ((climateVector .get(climateYear.indexOf(listYears.get(j)))) != -1.0)) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { // TODO // ELENA TO IMPLEMENT if (percentOfRecordingfilter.get(j) == -99) { climateVectorActualSite.add(-1); } else { if ((percentOfRecordingfilter.get(j) < firesFilter2) && ((climateVector .get(climateYear.indexOf(listYears.get(j)))) != -1.0)) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } } else { log.error("Unknown FireFilterType"); return; } } // end of if filter not equal to 1 else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } // end of else of if filter not equal to 1 } // end of if the filter minsampedepth else { // log.debug("j is " + j + "minSampleFilter is " + minSampleFilter.get(j)); climateVectorActualSite.add(-1); } } // end else 645 to 721 } // end of j loop listyears (420-459) /* * climateMatrixSite has the composite information taking in consideration both the filters and common years */ climateMatrixSite.add(climateVectorActualSite); /* * Must get the years with Fires from the climateMatrixSite which has been filter already */ ArrayList<Double> fireintervalspersite = new ArrayList<Double>(); ArrayList<Integer> yearsWithFires = new ArrayList<Integer>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateMatrixSite.get(i).get(ij) == 1) { yearsWithFires.add(listYears.get(ij)); log.debug("year with fires " + listYears.get(ij)); } } /* * check that the number of years with fires is bigger of equal than 3 if so make the fire intervals else the test can not * be run and report NA */ // new swich if (yearsWithFires.size() != 0) { if (includeIncomplete) { if (maxLastYear.compareTo(yearsWithFires.get(yearsWithFires.size() - 1)) != 0) { log.debug("here"); numberOfintervalscomp[i] = yearsWithFires.size(); } else { numberOfintervalscomp[i] = yearsWithFires.size() - 1; } } else { numberOfintervalscomp[i] = yearsWithFires.size() - 1; } } log.debug("number of invervlas in comp is: " + numberOfintervalscomp[i]); // end of new switch if (numberOfintervalscomp[i] >= 3) { enoughIntComp[i] = true; ArrayList<Integer> fireIntervals = generateFireIntervals(yearsWithFires); for (int ij = 0; ij < fireIntervals.size(); ij++) { // log.debug("fire intervals are: "+ // test1.getFireIntervals().get(ij)); fireintervalspersite.add(fireIntervals.get(ij) * 1.0); } /* * Add extra interval if include incomplete is selected. the interval goes from the last fire scar year to the last year * of the fire history. */ if (includeIncomplete) { double includeinterval = maxLastYear - yearsWithFires.get(yearsWithFires.size() - 1); if (includeinterval > 0) { fireintervalspersite.add(includeinterval); System.out.println("the last year is " + maxLastYear + "the last year with fire is " + yearsWithFires.get(yearsWithFires.size() - 1)); log.debug("the included interval is " + includeinterval); } } log.debug("FireintervalsPerSite =" + fireintervalspersite); /* * Get the normal statistics for the fire intervals add the values to the stats and then call them for the stats */ DescriptiveStatistics stats = new DescriptiveStatistics(); Dfireintervalspersite = new Double[fireintervalspersite.size()]; Dfireintervalspersite = fireintervalspersite.toArray(Dfireintervalspersite); dfireintervalspersite = new double[fireintervalspersite.size()]; // summaryComp = new // double[statsparam.length][myReader.size()]; for (int ik = 0; ik < fireintervalspersite.size(); ik++) { stats.addValue(Dfireintervalspersite[ik].doubleValue()); dfireintervalspersite[ik] = Dfireintervalspersite[ik].doubleValue(); } /* * load the Summary Analysis for the Composite fire intervals */ summaryComp[0][i] = fireintervalspersite.size(); // double mean = stats.getMean(); summaryComp[1][i] = stats.getMean(); // double median = // StatUtils.percentile(dfireintervalspersite, 50); summaryComp[2][i] = StatUtils.percentile(dfireintervalspersite, 50); // double std = stats.getStandardDeviation(); summaryComp[3][i] = stats.getStandardDeviation(); // double skew = stats.getSkewness(); summaryComp[4][i] = 1.0 / summaryComp[1][i]; summaryComp[5][i] = summaryComp[3][i] / summaryComp[1][i]; summaryComp[6][i] = stats.getSkewness(); // double kurt = stats.getKurtosis(); if (numberOfintervalscomp[i] == 3) { summaryComp[7][i] = -99; } else { summaryComp[7][i] = stats.getKurtosis(); } // log.debug("nomean \t\t nostd \t\t nokurt \t noskew \t\t nomedian"); // log.debug(twoPlace.format(mean)+"\t\t"+twoPlace.format(std)+"\t\t"+twoPlace.format(kurt)+"\t\t"+twoPlace.format(skew)+"\t\t"+twoPlace.format(median)); Weibull weibull = new Weibull(fireintervalspersite); ArrayList<Double> weibullProb = weibull.getWeibullProbability(fireintervalspersite); ArrayList<Double> siglonglowbound = new ArrayList<Double>(); ArrayList<Double> sigshortupbound = new ArrayList<Double>(); log.debug("the weibull probability of first element is " + weibullProb.get(0)); log.debug("the index the size of the interval is " + weibullProb.indexOf(weibullProb.get(0))); for (int ij = 0; ij < weibullProb.size() - 1; ij++) { if (weibullProb.get(ij) <= alphaLevel) { siglonglowbound.add(fireintervalspersite.get(ij)); } if (weibullProb.get(ij) >= (1 - alphaLevel)) { sigshortupbound.add(fireintervalspersite.get(ij)); } } summaryComp[10][i] = weibull.getScale(); summaryComp[11][i] = weibull.getShape(); summaryComp[12][i] = weibull.getMean(); summaryComp[13][i] = weibull.getMedian(); summaryComp[14][i] = weibull.getMode(); summaryComp[15][i] = weibull.getSigma(); summaryComp[16][i] = 1.0 / summaryComp[13][i]; summaryComp[17][i] = weibull.getSkew(); summaryComp[18][i] = weibull.getExceedenceProbability2()[0]; summaryComp[19][i] = weibull.getExceedenceProbability2()[1]; Collections.sort(sigshortupbound); log.debug("siglonglowbound is " + siglonglowbound); try { summaryComp[20][i] = sigshortupbound.get(sigshortupbound.size() - 1); } catch (Exception e) { summaryComp[20][i] = Double.NaN; } Collections.sort(siglonglowbound); try { summaryComp[21][i] = siglonglowbound.get(0); } catch (Exception e) { summaryComp[21][i] = Double.NaN; } log.debug("sigshortupbound is " + sigshortupbound); Collections.sort(fireintervalspersite); summaryComp[8][i] = fireintervalspersite.get(0); summaryComp[9][i] = fireintervalspersite.get(fireintervalspersite.size() - 1); // log.debug("shape \t\t scale \t\t median "); // log.debug(twoPlace.format(test1.Weibull_Parameters(fireintervalspersite)[0])+"\t\t"+twoPlace.format(test1.Weibull_Parameters(fireintervalspersite)[1])+"\t\t"+twoPlace.format(test1.weibull_median(test1.Weibull_Parameters(fireintervalspersite)))); // log.debug("mean \t\t sigma \t\t mode \t\t skewness"); // log.debug(twoPlace.format(test1.weibull_mean(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_sigma(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_mode(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_skew(test1.Weibull_Parameters(fireintervalspersite)))); // log.debug("maxhazard \t\t lei \t\t uei "); // log.debug(twoPlace.format(test1.maxhazard_int(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_lowuppexcint(test1.Weibull_Parameters(fireintervalspersite))[0])+"\t\t"+twoPlace.format(test1.weibull_lowuppexcint(test1.Weibull_Parameters(fireintervalspersite))[1])); // log.debug("the size of YearWith Fires is "+YearsWithFires.size()); System.out.println("the size of the prb exdc is " + weibull.getExceedenceProbability().length); for (int kk = 0; kk < weibull.getExceedenceProbability().length; kk++) { ExceeProbcomp[kk][i] = weibull.getExceedenceProbability()[kk]; // log.debug("file "+i+"Exce probability "+ // ExceeProbcomp[kk][i]); } } // end of if enoughIntComp else { enoughIntComp[i] = false; } } // end the if composite is selected /* * starting the process for the sample mode. */ if (analysisType.equals(AnalysisType.SAMPLE)) { log.debug("I am in sample "); ArrayList<Double> fireintervalspersample = new ArrayList<Double>(); FIyearperSampletemp = new ArrayList<Integer>(); // FyearperSampletemp = new ArrayList<Integer>(); for (int k = 0; k < myReader.get(i).getNumberOfSeries(); k++) { log.debug("Parsing file index " + i + ", series number " + (k + 1)); FyearperSampletemp = new ArrayList<Integer>(); // log.debug("the size of the years of the file is:"+ // myReader.get(i).getYear().size()); // log.debug("years with fires in sample "+k + // "years are "); // for (int j = 0; j < myReader.get(i).getYearArray().size(); j++) for (int j = 0; j < listYears.size(); j++) { // log.debug("the size climate2d is "+myReader.get(i).getClimate2d().get(k).get(j)); if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2d().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); FyearperSampletemp.add(listYears.get(j)); } } } // { // if ((myReader.get(i).getClimate2d().get(k).get(j) == 1)) // { // / log.debug("I here inside ==1 "+ // / j+" "+myReader.get(i).getFirstYear()); // / int temp=j+myReader.get(i).getFirstYear(); // / log.debug((j+myReader.get(i).getFirstYear())); // /// FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } // } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2dII().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { FyearperSampletemp.add(listYears.get(j)); } } // if ((myReader.get(i).getClimate2dII().get(k).get(j) == 1)) // { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2dIII().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { FyearperSampletemp.add(listYears.get(j)); } } // if ((myReader.get(i).getClimate2dIII().get(k).get(j) == 1)) // { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } } else { log.error("Unsupported event type caught"); } } // / end of the loop for listYears in common (finish loading the fire year per sample log.debug( "series number " + (k + 1) + " FyearperSampletemp.size() " + FyearperSampletemp.size()); if (FyearperSampletemp.size() != 0) { if (includeIncomplete) { if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) { numberOfintervalssamp[i] = numberOfintervalssamp[i] + FyearperSampletemp.size(); } } else { numberOfintervalssamp[i] = numberOfintervalssamp[i] + (FyearperSampletemp.size() - 1); } } log.debug("series number: " + (k + 1) + " number of intervals " + numberOfintervalssamp[i]); // new if ((FyearperSampletemp.size() == 1) && (includeIncomplete)) { log.debug("last index per sample is " + myReader.get(i).getLastYearIndexPerSample()[k]); log.debug("first year per sample is " + myReader.get(i).getFirstYear()); log.debug("maxLastyear is " + maxLastYear); // if (maxLastYear != FyearperSampletemp.get(FyearperSampletemp.size() - 1)) if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) { log.debug("I am in not equal "); log.debug( "last year in the sample is " + (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())); log.debug("maxLastyear is " + maxLastYear); log.debug("the last fire year in the sample " + FyearperSampletemp.get(FyearperSampletemp.size() - 1)); if (maxLastYear <= (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())) { Integer temp = ((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // int temp1 = maxLastYear.intValue() - FyearperSampletemp.get(FyearperSampletemp.size() - 1).intValue(); log.debug("in less than or equal to "); // temp = (maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1); log.debug("the resta temp is " + temp); // FIyearperSampletemp.add(((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1))); if ((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1) > 0) { FIyearperSampletemp.add( (maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); log.debug("the fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // FIyearperSampletemp.add(temp); // log.debug("the fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } else { log.debug("in else "); FIyearperSampletemp.add((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // FIyearperSampletemp.add((myReader.get(i).getFirstYear() + myReader.get(i).getLastYearIndexPerSample()[k]) // - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); } // log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // end of if one fire year and includelastyear so we have at least one interval in a given series. // endofnew if ((FyearperSampletemp.size() >= 2)) { log.debug("Series number is " + (k + 1)); for (int jk = 0; jk < FyearperSampletemp.size() - 1; jk++) { // FIyearperSampletemp.add(FyearperSample.get(k).get(jk+1) // - FyearperSample.get(k).get(jk)); log.debug("FyearperSampletemp is " + FyearperSampletemp.get(jk)); if ((FyearperSampletemp.get(jk + 1) - FyearperSampletemp.get(jk)) > 0) { FIyearperSampletemp .add(FyearperSampletemp.get(jk + 1) - FyearperSampletemp.get(jk)); } // FIyearperSampletemp.add(FyearperSampletemp.get(jk+1) // - FyearperSampletemp.get(jk)); log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(jk)); // fisumtemp= fisumtemp + // FIyearperSampletemp.get(jk).intValue(); } if (includeIncomplete) { // if (maxLastYear != FyearperSampletemp.get(FyearperSampletemp.size() - 1)) if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) // if ((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) != FyearperSampletemp // .get(FyearperSampletemp.size() - 1)) { if (maxLastYear <= (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())) { if (((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)) > 0) { FIyearperSampletemp.add(((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1))); } } else { FIyearperSampletemp.add((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); } // log.debug("the sample number is "+k+ // " the size of the fyearpersampletemp is "+ // FyearperSampletemp.size() ); // log.debug("the last year per sample is " // + (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())); // log.debug(" the last fire year per sample " + FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // FIyearperSampletemp.add((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // log.debug("the last intrval in included is on is " // + FIyearperSampletemp.get(FIyearperSampletemp.size() - 1)); } } } // end of if at least 2 fier years so we have at least one interval in a given series. log.debug("size of FIyearperSampletemp " + FIyearperSampletemp.size() + " at series is :" + (k + 1)); // FIyearperSampletemp.size()+ // " X "+FIyearperSampletemp.get(0).size()); } // end of the loop for number of series. // log.debug("size of FIyearperSample "+ // FIyearperSampletemp.size()); for (int j = 0; j < FIyearperSampletemp.size(); j++) { fireintervalspersample.add(FIyearperSampletemp.get(j) * 1.0); } /* * Get the normal statistics for the fire intervals add the values to the stats and then call them for the stats */ if (fireintervalspersample.size() >= 3) { enoughIntSamp[i] = true; DescriptiveStatistics stasample = new DescriptiveStatistics(); Dfireintervalspersample = new Double[fireintervalspersample.size()]; Dfireintervalspersample = fireintervalspersample.toArray(Dfireintervalspersample); dfireintervalspersample = new double[fireintervalspersample.size()]; // summarySample = new // double[statsparam.length][myReader.size()]; for (int ik = 0; ik < fireintervalspersample.size(); ik++) { stasample.addValue(Dfireintervalspersample[ik].doubleValue()); dfireintervalspersample[ik] = Dfireintervalspersample[ik].doubleValue(); log.debug("the " + ik + " fire interval is " + dfireintervalspersample[ik]); } log.debug("the size for dfireintervalspersample is " + dfireintervalspersample.length); // ADDED BY PETE if (dfireintervalspersample.length == 0) continue; /* * load the Summary Analysis for the Sample fire intervals */ summarySample[0][i] = fireintervalspersample.size(); // double mean = stats.getMean(); summarySample[1][i] = stasample.getMean(); log.debug("mean sample is " + stasample.getMean()); // double median = // StatUtils.percentile(dfireintervalspersite, 50); summarySample[2][i] = StatUtils.percentile(dfireintervalspersample, 50); log.debug("summarySample[2][] " + i + " " + summarySample[2][i]); // double std = stats.getStandardDeviation(); summarySample[3][i] = stasample.getStandardDeviation(); log.debug("summarySample[3][] " + i + " " + summarySample[3][i]); // double skew = stats.getSkewness(); summarySample[4][i] = 1.0 / summarySample[1][i]; log.debug("summarySample[4][] " + i + " " + summarySample[4][i]); summarySample[5][i] = summarySample[3][i] / summarySample[1][i]; log.debug("summarySample[5][] " + i + " " + summarySample[5][i]); summarySample[6][i] = stasample.getSkewness(); log.debug("summarySample[6][] " + i + " " + summarySample[6][i]); // double kurt = stats.getKurtosis(); if (numberOfintervalssamp[i] == 3) { summarySample[7][i] = -99; } else { summarySample[7][i] = stasample.getKurtosis(); } // summarySample[7][i] = stasample.getKurtosis(); log.debug("summarySample[7][] " + i + " " + summarySample[7][i]); // log.debug("nomean \t\t nostd \t\t nokurt \t noskew \t\t nomedian"); // log.debug(twoPlace.format(mean)+"\t\t"+twoPlace.format(std)+"\t\t"+twoPlace.format(kurt)+"\t\t"+twoPlace.format(skew)+"\t\t"+twoPlace.format(median)); Weibull weibull = new Weibull(fireintervalspersample); // ArrayList<Double> weibullProb = weibull.getWeibullProbability(fireintervalspersample); ArrayList<Double> siglonglowbound = new ArrayList<Double>(); ArrayList<Double> sigshortupbound = new ArrayList<Double>(); log.debug("the weibull probability of first element is " + weibullProb.get(0)); log.debug("the index the size of the interval is " + weibullProb.indexOf(weibullProb.get(0))); for (int ij = 0; ij < weibullProb.size() - 1; ij++) { if (weibullProb.get(ij) <= alphaLevel) { siglonglowbound.add(fireintervalspersample.get(ij)); } if (weibullProb.get(ij) >= (1 - alphaLevel)) { sigshortupbound.add(fireintervalspersample.get(ij)); } } // summarySample[10][i] = weibull.getScale(); log.debug("summarySample[10][] " + i + " " + summarySample[10][i]); summarySample[11][i] = weibull.getShape(); log.debug("summarySample[11][] " + i + " " + summarySample[11][i]); summarySample[12][i] = weibull.getMean(); summarySample[13][i] = weibull.getMedian(); summarySample[14][i] = weibull.getMode(); summarySample[15][i] = weibull.getSigma(); summarySample[16][i] = 1.0 / summarySample[13][i]; summarySample[17][i] = weibull.getSkew(); summarySample[18][i] = weibull.getExceedenceProbability2()[0]; summarySample[19][i] = weibull.getExceedenceProbability2()[1]; Collections.sort(sigshortupbound); log.debug("siglonglowbound is " + siglonglowbound); try { summarySample[20][i] = sigshortupbound.get(sigshortupbound.size() - 1); } catch (Exception e) { summarySample[20][i] = Double.NaN; } Collections.sort(siglonglowbound); try { summarySample[21][i] = siglonglowbound.get(0); } catch (Exception e) { summarySample[21][i] = Double.NaN; } log.debug("sigshortupbound is " + sigshortupbound); Collections.sort(fireintervalspersample); try { summarySample[8][i] = fireintervalspersample.get(0); } catch (Exception ex) { log.error("Index out of bounds exception caught: "); log.error(" summarySample[8][i] = fireintervalspersample.get(0)"); ex.printStackTrace(); } summarySample[9][i] = fireintervalspersample.get(fireintervalspersample.size() - 1); // log.debug("shape \t\t scale \t\t median "); // log.debug(twoPlace.format(test2.Weibull_Parameters(fireintervalspersample)[0])+"\t\t"+twoPlace.format(test2.Weibull_Parameters(fireintervalspersample)[1])+"\t\t"+twoPlace.format(test2.weibull_median(test1.Weibull_Parameters(fireintervalspersample)))); // log.debug("mean \t\t sigma \t\t mode \t\t skewness"); // log.debug(twoPlace.format(test1.weibull_mean(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test1.weibull_sigma(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test2.weibull_mode(test1.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test1.weibull_skew(test2.Weibull_Parameters(fireintervalspersample)))); // log.debug("maxhazard \t\t lei \t\t uei "); // log.debug(twoPlace.format(test2.maxhazard_int(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test2.weibull_lowuppexcint(test2.Weibull_Parameters(fireintervalspersample))[0])+"\t\t"+twoPlace.format(test2.weibull_lowuppexcint(test2.Weibull_Parameters(fireintervalspersample))[1])); // log.debug("the size of YearWith Fires is "+YearsWithFires.size()); // log.debug("the size of the prb exdc is // "+test2.weibull_Exprob(test2.Weibull_Parameters(fireintervalspersample)).length); System.out.println( "the size of the prb exdc sample is " + weibull.getExceedenceProbability().length); for (int kk = 0; kk < weibull.getExceedenceProbability().length; kk++) { ExceeProbsample[kk][i] = weibull.getExceedenceProbability()[kk]; log.debug("file " + i + " Exce probability " + ExceeProbsample[kk][i]); // log.debug("the size is "+ExceeProbsample.length); } } // end of if at least 4 fireintervals else { enoughIntSamp[i] = false; } } // end of if jRadioSample selected. // log.debug("the size of exceeprobsample is "ExceeProbsample.length+" X "+ExceeProbsample[0].length); } // end of i readering each file loop do loop (354-1185) /* * */ // log.debug("size of the climateMatrixSite is "+climateMatrixSite.size()+" X "+climateMatrixSite.get(0).size()); // for (int j = 0; j < listYears.size(); j++){ // log.debug(climateMatrixSite.get(0).get(j) + " " + // listYears.get(j)); // } // setCursor(Cursor.getDefaultCursor()); /* * create JFileChooser object to generate a browsing capabilities */ JFileChooser fileBrowse = new JFileChooser(); fileBrowse = new JFileChooser(savePath.substring(0, savePath.lastIndexOf(File.separator))); /* * set multiselect on (even though we don't need it) */ fileBrowse.setMultiSelectionEnabled(true); /* * set file and folder directive */ fileBrowse.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); /* * set file type: coma delimited file csv */ // FileFilter filter1 = new CSVFileFilter(); fileBrowse.setFileFilter(filter1); /* * set dialog text: select the name and location of the matrix files */ fileBrowse.setDialogTitle("Select the name and location of the Stats Summary file:"); /* * create the writer object for each of the files to be created */ Writer wr; Writer wrWDE; Writer wrSample; Writer wrWDESample; /* * set delimiter in this case we are using comas "," */ String delim = ","; /* * Start writing information into the files */ try { if (analysisType.equals(AnalysisType.COMPOSITE)) { wr = new BufferedWriter(new FileWriter(summaryFile)); wrWDE = new BufferedWriter(new FileWriter(exceedenceFile)); /* * write the heading to the files */ String buffer = ""; buffer = buffer + "Composite Parameters" + delim; for (int i = 0; i < inputFileArray.length; i++) { buffer = buffer + inputFileArray[i].getLabel() + delim; } ; wr.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; for (int j = 0; j < statsparam.length; j++) { buffer = buffer + statsparam[j] + delim; for (int k = 0; k < inputFileArray.length; k++) { if (j == 0) { if (numberOfintervalscomp[k] < 3) { buffer = buffer + twoPlace.format(numberOfintervalscomp[k]) + delim; } else { buffer = buffer + twoPlace.format(summaryComp[0][k]) + delim; } } else { if (enoughIntComp[k]) { if (summaryComp[j][k] == -99) { buffer = buffer + "" + delim; } else { buffer = buffer + twoPlace.format(summaryComp[j][k]) + delim; } } else { buffer = buffer + "" + delim; } } } // end of k loop filearray wr.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; } // end of j loop Stats // wr.close(); // // // wrWDE = new BufferedWriter(new // FileWriter(outputWDExceeTable)); /* * write the heading to the files */ buffer = ""; wrWDE.write("Exceedence Prob" + delim); for (int i = 0; i < inputFileArray.length; i++) { buffer = buffer + inputFileArray[i].getLabel() + delim; } wrWDE.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; for (int j = 0; j < fixvalt.length; j++) { buffer = buffer + threePlace.format(fixvalt[j]) + delim; for (int k = 0; k < inputFileArray.length; k++) { if (enoughIntComp[k]) { buffer = buffer + twoPlace.format(ExceeProbcomp[j][k]) + delim; } else { buffer = buffer + "" + delim; } } wrWDE.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; } wr.close(); wrWDE.close(); } // end of if jRadioComp is selecte if (analysisType.equals(AnalysisType.SAMPLE)) { wrSample = new BufferedWriter(new FileWriter(summaryFile)); wrWDESample = new BufferedWriter(new FileWriter(exceedenceFile)); /* * write the heading to the files */ wrSample.write("Sample Parameters" + delim); for (int i = 0; i < inputFileArray.length; i++) { wrSample.write(inputFileArray[i].getLabel() + delim); } wrSample.write(System.getProperty("line.separator")); for (int j = 0; j < statsparam.length; j++) { wrSample.write(statsparam[j] + delim); for (int k = 0; k < inputFileArray.length; k++) { if (j == 0) { if (numberOfintervalssamp[k] < 3) { wrSample.write(twoPlace.format(numberOfintervalssamp[k]) + delim); } else { wrSample.write(twoPlace.format(summarySample[0][k]) + delim); } } else { if (enoughIntSamp[k]) { if (summarySample[j][k] == -99) { wrSample.write("" + delim); } else { wrSample.write(twoPlace.format(summarySample[j][k]) + delim); } } else { wrSample.write("" + delim); } } } // end of k loop file array wrSample.write(System.getProperty("line.separator")); } // end of loop j loop stats // wrSample.close(); // // // log.debug("the size is "+fixvalt.length+" X "+inputFile.length); // wrWDESample = new BufferedWriter(new // FileWriter(outputWDExceeTablesample)); /* * write the heading to the files */ wrWDESample.write("Exceedence Prob" + delim); for (int i = 0; i < inputFileArray.length; i++) { wrWDESample.write(inputFileArray[i].getLabel() + delim); } wrWDESample.write(System.getProperty("line.separator")); for (int j = 0; j < fixvalt.length; j++) { wrWDESample.write(threePlace.format(fixvalt[j]) + delim); for (int k = 0; k < inputFileArray.length; k++) { // System.out.print(ExceeProbcomp[j][k]+delim); if (enoughIntSamp[k]) { wrWDESample.write(twoPlace.format(ExceeProbsample[j][k]) + delim); } else { wrWDESample.write("" + delim); } } // System.out.print(System.getProperty("line.separator")); wrWDESample.write(System.getProperty("line.separator")); } wrSample.close(); wrWDESample.close(); } // end of jradiosample } // end of Try catch (IOException ex) { ex.printStackTrace(); } finally { } }
From source file:org.fhaes.gui.ShapeFileDialog.java
/** * Prompt the user for an output filename * /*ww w .j a va 2s. c om*/ * @param filter * @return */ private File getOutputFile(FileFilter filter) { String lastVisitedFolder = App.prefs.getPref(PrefKey.PREF_LAST_EXPORT_FOLDER, null); File outputFile; // Create a file chooser final JFileChooser fc = new JFileChooser(lastVisitedFolder); fc.setAcceptAllFileFilterUsed(true); if (filter != null) { fc.addChoosableFileFilter(filter); fc.setFileFilter(filter); } fc.setFileSelectionMode(JFileChooser.FILES_ONLY); fc.setMultiSelectionEnabled(false); fc.setDialogTitle("Save as..."); // In response to a button click: int returnVal = fc.showSaveDialog(this); if (returnVal == JFileChooser.APPROVE_OPTION) { outputFile = fc.getSelectedFile(); if (FileUtils.getExtension(outputFile.getAbsolutePath()) == "") { log.debug("Output file extension not set by user"); if (fc.getFileFilter().getDescription().equals(new SHPFileFilter().getDescription())) { log.debug("Adding shp extension to output file name"); outputFile = new File(outputFile.getAbsolutePath() + ".shp"); } } else { log.debug("Output file extension set my user to '" + FileUtils.getExtension(outputFile.getAbsolutePath()) + "'"); } App.prefs.setPref(PrefKey.PREF_LAST_EXPORT_FOLDER, outputFile.getAbsolutePath()); } else { return null; } if (outputFile.exists()) { Object[] options = { "Overwrite", "No", "Cancel" }; int response = JOptionPane.showOptionDialog(this, "The file '" + outputFile.getName() + "' already exists. Are you sure you want to overwrite?", "Confirm", JOptionPane.YES_NO_CANCEL_OPTION, JOptionPane.QUESTION_MESSAGE, null, // do not use a custom Icon options, // the titles of buttons options[0]); // default button title if (response != JOptionPane.YES_OPTION) { return null; } } return outputFile; }
From source file:org.gcaldaemon.gui.ConfigEditor.java
public final String selectDir(String title, String path) { JFileChooser fd = new JFileChooser(path); fd.setDialogTitle(title);/*from w w w. j av a2 s .c o m*/ fd.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); int state = fd.showOpenDialog(this); if (state != JFileChooser.APPROVE_OPTION) { return null; } String dir = fd.getSelectedFile().getAbsolutePath(); return dir.replace('\\', '/'); }
From source file:org.geopublishing.geopublisher.GpUtil.java
/** * Performs a file OPEN choose as a fallback * //from w ww . java 2s. c om * @param parent * component for the dialog (can be {@code null}) * @param startFolder * start folder for the chooser (if {@code null} "/" is used) * @param filter * defines which files can be selected. Only the last filter in * the list will be offered due to limitations * @return {@code null} if the dialog was not approved */ public static File chooseFileOpenFallback(Component parent, File startFolder, String title, FileExtensionFilter... filters) { if (startFolder == null) startFolder = new File("/"); if (startFolder.isFile()) startFolder = startFolder.getParentFile(); JFileChooser chooser = new JFileChooser(startFolder); chooser.setDialogType(JFileChooser.OPEN_DIALOG); if (filters != null) { chooser.setAcceptAllFileFilterUsed(false); chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setFileFilter(filters[0].toJFileChooserFilter()); } if (title != null) chooser.setDialogTitle(title); int ret = chooser.showOpenDialog(parent); if (ret == JFileChooser.APPROVE_OPTION) return chooser.getSelectedFile(); return null; }
From source file:org.giswater.controller.MenuController.java
private String chooseSqlFile(boolean save) { String path = ""; JFileChooser chooser = new JFileChooser(); FileFilter filter = new FileNameExtensionFilter("SQL extension file", "sql"); chooser.setFileFilter(filter);/*from w w w.java 2 s . c om*/ chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setDialogTitle(Utils.getBundleString("MenuController.file_sql")); File file = new File(PropertiesDao.getLastSqlPath()); chooser.setCurrentDirectory(file.getParentFile()); int returnVal; if (save) { returnVal = chooser.showSaveDialog(mainFrame); } else { returnVal = chooser.showOpenDialog(mainFrame); } if (returnVal == JFileChooser.APPROVE_OPTION) { File fileSql = chooser.getSelectedFile(); path = fileSql.getAbsolutePath(); if (path.lastIndexOf(".") == -1) { path += ".sql"; fileSql = new File(path); } PropertiesDao.setLastSqlPath(path); } return path; }
From source file:org.giswater.controller.MenuController.java
private File gswChooseFile(boolean save) { String path = ""; File file = null;/* ww w . ja v a 2 s .com*/ JFileChooser chooser = new JFileChooser(); FileFilter filter = new FileNameExtensionFilter("GSW extension file", "gsw"); chooser.setFileFilter(filter); chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setDialogTitle(Utils.getBundleString("MenuController.gsw_file")); File fileProp = new File(prop.get("FILE_GSW", Utils.getLogFolder())); chooser.setCurrentDirectory(fileProp.getParentFile()); int returnVal; if (save) { returnVal = chooser.showSaveDialog(mainFrame); } else { returnVal = chooser.showOpenDialog(mainFrame); } if (returnVal == JFileChooser.APPROVE_OPTION) { file = chooser.getSelectedFile(); path = file.getAbsolutePath(); if (path.lastIndexOf(".") == -1) { path += ".gsw"; file = new File(path); } } return file; }
From source file:org.giswater.controller.MenuController.java
private String chooseFileSetup(String fileName) { String path = ""; JFileChooser chooser = new JFileChooser(); FileFilter filter = new FileNameExtensionFilter("EXE extension file", "exe"); chooser.setFileFilter(filter);/*ww w . j av a 2 s .com*/ chooser.setFileSelectionMode(JFileChooser.FILES_ONLY); chooser.setDialogTitle(Utils.getBundleString("file_exe")); File file = new File(usersFolder + fileName); chooser.setCurrentDirectory(file); chooser.setSelectedFile(file); int returnVal = chooser.showOpenDialog(mainFrame); if (returnVal == JFileChooser.APPROVE_OPTION) { File fileSql = chooser.getSelectedFile(); path = fileSql.getAbsolutePath(); if (path.lastIndexOf(".") == -1) { path += ".exe"; fileSql = new File(path); } } return path; }