Example usage for javax.swing JFileChooser setDialogTitle

List of usage examples for javax.swing JFileChooser setDialogTitle

Introduction

In this page you can find the example usage for javax.swing JFileChooser setDialogTitle.

Prototype

@BeanProperty(preferred = true, description = "The title of the JFileChooser dialog window.")
public void setDialogTitle(String dialogTitle) 

Source Link

Document

Sets the string that goes in the JFileChooser window's title bar.

Usage

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Setup the environment to save the current SPARQL results to a file.
 * /*w  w  w. j  a va2  s.c o m*/
 * @see #writeSparqlResults(File)
 */
private void setupToWriteSparqlResults() {
    JFileChooser fileChooser;
    File destinationFile;
    int choice;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser();

    if (sparqlResultsExportFile != null) {
        fileChooser.setSelectedFile(sparqlResultsExportFile);
    } else {
        fileChooser.setSelectedFile(lastDirectoryUsed);
    }

    fileChooser.setDialogTitle("Save SPARQL Results to File (Format:"
            + (setupExportSparqlResultsAsCsv.isSelected() ? "CSV" : "TSV") + ")");
    choice = fileChooser.showSaveDialog(this);
    destinationFile = fileChooser.getSelectedFile();

    // Did not click save, did not select a file or chose a directory
    // So do not write anything
    if (choice != JFileChooser.APPROVE_OPTION || destinationFile == null
            || (destinationFile.exists() && !destinationFile.isFile())) {
        return; // EARLY EXIT!
    }

    if (okToOverwriteFile(destinationFile)) {
        sparqlResultsExportFile = destinationFile;
        runSparqlResultsExport();
    }
}

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Setup the environment to save the current model to a file.
 * //from  w w  w . ja  v  a  2s.com
 * @see #writeOntologyModel(File)
 */
private void setupToWriteOntologyModel() {
    JFileChooser fileChooser;
    File destinationFile;
    int choice;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser();

    if (rdfFileSource != null && rdfFileSource.isFile()) {
        fileChooser.setSelectedFile(rdfFileSource.getBackingFile());
    } else {
        fileChooser.setSelectedFile(lastDirectoryUsed);
    }

    fileChooser.setDialogTitle("Save Ontology Model to File (" + getSelectedOutputLanguage() + ")");
    choice = fileChooser.showSaveDialog(this);
    destinationFile = fileChooser.getSelectedFile();

    // Did not click save, did not select a file or chose a directory
    // So do not write anything
    if (choice != JFileChooser.APPROVE_OPTION || destinationFile == null
            || (destinationFile.exists() && !destinationFile.isFile())) {
        return; // EARLY EXIT!
    }

    if (okToOverwriteFile(destinationFile)) {
        modelExportFile = destinationFile;
        runModelExport();
    }
}

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Save the text from the assertions text area to a file Note that this is
 * not the model and it may not be in an legal syntax for RDF triples. It is
 * simply storing what the user has placed in the text area.
 * //w w w . ja v  a  2 s.c  om
 * @see writeOntologyModel
 */
private void saveAssertionsToFile() {
    FileWriter out;
    JFileChooser fileChooser;
    File destinationFile;
    int choice;

    out = null;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser();

    if (rdfFileSource != null && rdfFileSource.isFile()) {
        fileChooser.setSelectedFile(rdfFileSource.getBackingFile());
    } else {
        fileChooser.setSelectedFile(lastDirectoryUsed);
    }

    fileChooser.setDialogTitle("Save Assertions to File");
    choice = fileChooser.showSaveDialog(this);
    destinationFile = fileChooser.getSelectedFile();

    // Did not click save, did not select a file or chose a directory
    // So do not write anything
    if (choice != JFileChooser.APPROVE_OPTION || destinationFile == null
            || (destinationFile.exists() && !destinationFile.isFile())) {
        return; // EARLY EXIT!
    }

    if (okToOverwriteFile(destinationFile)) {

        LOGGER.info("Write assertions to file, " + destinationFile);

        try {
            out = new FileWriter(destinationFile, false);
            out.write(assertionsInput.getText());
            setRdfFileSource(new FileSource(destinationFile));
            addRecentAssertedTriplesFile(new FileSource(destinationFile));
        } catch (IOException ioExc) {
            final String errorMessage = "Unable to write to file: " + destinationFile;
            LOGGER.error(errorMessage, ioExc);
            throw new RuntimeException(errorMessage, ioExc);
        } finally {
            if (out != null) {
                try {
                    out.close();
                } catch (Throwable throwable) {
                    final String errorMessage = "Failed to close output file: " + destinationFile;
                    LOGGER.error(errorMessage, throwable);
                    throw new RuntimeException(errorMessage, throwable);
                }
            }
        }
    }
}

From source file:base.BasePlayer.Main.java

public void actionPerformed(ActionEvent e) {
    //Logo.frame.setVisible(false);
    if (e.getSource() == pleiadesButton) {
        gotoURL("http://kaptah.local.lab.helsinki.fi/pleiades/");

    } else if (e.getSource() == manage) {

        if (VariantHandler.frame == null) {
            VariantHandler.main(argsit);
        }/*from ww  w. j  av  a  2 s . co m*/
        VariantHandler.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - VariantHandler.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);

        VariantHandler.frame.setState(JFrame.NORMAL);
        VariantHandler.frame.setVisible(true);
        Draw.calculateVars = true;
        Draw.updatevars = true;
        drawCanvas.repaint();

    } else if (e.getSource() == tbrowser) {
        tablebrowser.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - VariantCaller.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);
        tablebrowser.frame.setState(JFrame.NORMAL);

        tablebrowser.frame.setVisible(true);
    } else if (e.getSource() == bconvert) {
        bedconverter.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - VariantCaller.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);
        bedconverter.frame.setState(JFrame.NORMAL);

        bedconverter.frame.setVisible(true);
    } else if (e.getSource() == peakCaller) {
        if (PeakCaller.frame == null) {

            PeakCaller.main(argsit);

        }
        PeakCaller.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - VariantCaller.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);
        PeakCaller.frame.setState(JFrame.NORMAL);
        PeakCaller.frame.setVisible(true);
    } else if (e.getSource() == variantCaller) {

        //FileRead.checkSamples();

        if (VariantCaller.frame == null) {

            VariantCaller.main(argsit);

        }
        VariantCaller.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - VariantCaller.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);
        VariantCaller.frame.setState(JFrame.NORMAL);
        VariantCaller.frame.setVisible(true);
    } else if (e.getSource() == average) {
        if (Average.frame == null) {
            Average.createAndShowGUI();
        }
        Average.setSamples();

        Average.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - Average.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);

        Average.frame.setState(JFrame.NORMAL);
        Average.frame.setVisible(true);
    } else if (e.getSource() == errorlog) {

        ErrorLog.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - ErrorLog.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);

        //      VariantHandler.frame.setAlwaysOnTop(true);   
        ErrorLog.frame.setState(JFrame.NORMAL);
        ErrorLog.frame.setVisible(true);

    }
    /*   else if(e.getSource() == help) {
          JOptionPane.showMessageDialog(Main.chromDraw, "This is pre-release version of BasePlayer\nContact: help@baseplayer.fi\nUniversity of Helsinki", "Help", JOptionPane.INFORMATION_MESSAGE);
       }*/
    else if (e.getSource() == settings) {

        Settings.frame.setLocation(
                frame.getLocationOnScreen().x + frame.getWidth() / 2 - Settings.frame.getWidth() / 2,
                frame.getLocationOnScreen().y + frame.getHeight() / 6);

        Settings.frame.setState(JFrame.NORMAL);
        Settings.frame.setVisible(true);
    } else if (e.getSource() == update) {
        try {
            Updater update = new Updater();
            update.execute();

        } catch (Exception ex) {
            ex.printStackTrace();
        }

    } else if (e.getSource() == clearMemory) {
        FileRead.nullifyVarNodes();

        //FileRead.removeNonListVariants();f
        System.gc();
        chromDraw.repaint();
    } else if (e.getSource() == zoomout) {

        zoomout();
    } else if (e.getSource() == dosomething) {

        BedNode currentbed = bedCanvas.bedTrack.get(0).getHead().getNext();
        VarNode currentvar = FileRead.head.getNext();

        while (currentbed != null) {

            while (currentvar != null && currentvar.getPosition() < currentbed.getPosition()) {
                currentvar = currentvar.getNext();
            }
            while (currentbed != null
                    && currentvar.getPosition() > currentbed.getPosition() + currentbed.getLength()) {
                currentbed = currentbed.getNext();
            }

            if (currentvar != null && currentvar.getPosition() >= currentbed.getPosition()
                    && currentvar.getPosition() < currentbed.getPosition() + currentbed.getLength()) {
                currentvar.setBedhit(true);
                currentvar = currentvar.getNext();
            }
            if (currentvar == null) {
                break;
            }
            currentbed = currentbed.getNext();
        }

    } else if (e.getSource() == clear) {
        clearData();
    } else if (e.getSource() == exit) {

        System.exit(0);
    } else if (e.getSource() == openbams) {
        try {
            if (!checkGenome())
                return;
            if (VariantHandler.frame != null) {
                VariantHandler.frame.setState(Frame.ICONIFIED);
            }

            FileDialog fc = new FileDialog(frame, "Choose BAM file(s)", FileDialog.LOAD);
            fc.setDirectory(path);
            fc.setFile("*.bam;*.cram;*.link");
            fc.setFilenameFilter(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toLowerCase().endsWith(".bam") || name.toLowerCase().endsWith(".cram")
                            || name.toLowerCase().endsWith(".link");
                }
            });
            fc.setMultipleMode(true);
            fc.setVisible(true);
            File[] openfiles = fc.getFiles();

            if (openfiles != null && openfiles.length > 0) {

                path = openfiles[0].getParent();
                writeToConfig("DefaultDir=" + path);
                FileRead filereader = new FileRead(openfiles);

                filereader.start = (int) drawCanvas.selectedSplit.start;
                filereader.end = (int) drawCanvas.selectedSplit.end;
                filereader.readBAM = true;
                filereader.execute();

            } else {
                //Main.showError("File(s) does not exist.", "Error");
            }

        } catch (Exception ex) {
            Main.showError(ex.getMessage(), "Error");
        }
    } else if (e.getSource() == openvcfs) {
        try {
            if (!checkGenome())
                return;
            if (VariantHandler.frame != null) {
                VariantHandler.frame.setState(Frame.ICONIFIED);
            }

            FileDialog fc = new FileDialog(frame, "Choose VCF file(s)", FileDialog.LOAD);
            fc.setDirectory(path);
            fc.setFile("*.vcf");
            fc.setFilenameFilter(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toLowerCase().endsWith(".vcf") || name.toLowerCase().endsWith(".vcf.gz");
                }
            });

            fc.setMultipleMode(true);
            fc.setVisible(true);
            File[] openfiles = fc.getFiles();

            if (openfiles != null && openfiles.length > 0) {

                path = openfiles[0].getParent();
                writeToConfig("DefaultDir=" + path);
                FileRead filereader = new FileRead(openfiles);

                filereader.start = (int) drawCanvas.selectedSplit.start;
                filereader.end = (int) drawCanvas.selectedSplit.end;
                filereader.readVCF = true;
                filereader.execute();

            } else {
                //Main.showError("File(s) does not exist.", "Error");
            }

            if (1 == 1) {
                return;
            }

            JFileChooser chooser = new JFileChooser(path);
            getText(chooser.getComponents());
            chooser.setMultiSelectionEnabled(true);
            //chooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
            chooser.setFileSelectionMode(JFileChooser.FILES_ONLY);
            chooser.setAcceptAllFileFilterUsed(false);
            chooser.addChoosableFileFilter(vcfFilter);
            chooser.addChoosableFileFilter(bamFilter);
            chooser.addChoosableFileFilter(linkFilter);
            if (defaultSelectType == "vcf") {
                chooser.setFileFilter(vcfFilter);
            } else if (defaultSelectType == "bam") {
                chooser.setFileFilter(bamFilter);
            } else {
                chooser.setFileFilter(linkFilter);
            }
            chooser.setDialogTitle("Add samples");
            chooser.setPreferredSize(
                    new Dimension((int) screenSize.getWidth() / 3, (int) screenSize.getHeight() / 3));
            int returnVal = chooser.showOpenDialog((Component) this.getParent());

            if (returnVal == JFileChooser.APPROVE_OPTION) {

                File vcffiles[] = chooser.getSelectedFiles();
                if (vcffiles.length == 1 && !vcffiles[0].exists() && pleiades) {

                    if (Main.chooserText.contains("`")) {
                        Main.chooserText.replace("`", "?");
                    }
                    if (Main.chooserText.contains(" ")) {
                        Main.chooserText.replace(" ", "%20");
                    }
                    if (Main.chooserText.contains("pleiades")) {
                        try {
                            URL url = new URL(Main.chooserText);
                            //System.out.println(Main.chooserText);
                            HttpURLConnection httpConn = (HttpURLConnection) url.openConnection();
                            httpConn.connect();

                            int responseCode = httpConn.getResponseCode();

                            if (responseCode == HttpsURLConnection.HTTP_OK) {

                                String loading = drawCanvas.loadingtext;
                                InputStream inputStream = httpConn.getInputStream();
                                BufferedReader reader = new BufferedReader(new InputStreamReader(inputStream));
                                Main.drawCanvas.loadingtext = loading + " 0MB";
                                String line;
                                StringBuffer buffer = new StringBuffer("");
                                while ((line = reader.readLine()) != null) {

                                    buffer.append(line);

                                }
                                inputStream.close();
                                reader.close();
                                String split2;
                                String[] split = buffer.toString().split("dataUnit");
                                String location;
                                ArrayList<File> array = new ArrayList<File>();
                                File[] paths;
                                FileSystemView fsv = FileSystemView.getFileSystemView();
                                paths = File.listRoots();
                                String loc = "/mnt";
                                boolean missingfiles = false;
                                for (File path : paths) {
                                    if (fsv.getSystemDisplayName(path).contains("merit")) {
                                        loc = path.getCanonicalPath();
                                    }
                                }

                                for (int i = 0; i < split.length; i++) {

                                    if (!split[i].contains("lastLocation")) {

                                        continue;
                                    }

                                    split2 = split[i].split("\"lastLocation\":\"")[1];
                                    location = split2.substring(0, split2.indexOf("\"}"));
                                    String filename = "";
                                    String testloc = location.replace("/mnt", loc) + "/wgspipeline/";
                                    File testDir = new File(testloc);
                                    if (testDir.exists() && testDir.isDirectory()) {
                                        if (chooser.getFileFilter()
                                                .equals(chooser.getChoosableFileFilters()[1])) {
                                            File[] addDir = testDir.listFiles(new FilenameFilter() {
                                                public boolean accept(File dir, String name) {
                                                    return name.toLowerCase().endsWith(".bam")
                                                            || name.toLowerCase().endsWith(".cram");
                                                }
                                            });
                                            if (addDir.length > 0) {
                                                filename = addDir[0].getName();
                                            }
                                        } else {
                                            File[] addDir = testDir.listFiles(new FilenameFilter() {
                                                public boolean accept(File dir, String name) {
                                                    return name.toLowerCase().endsWith(".vcf.gz");
                                                }
                                            });
                                            if (addDir.length > 0) {
                                                filename = addDir[0].getName();
                                            }
                                        }
                                    }

                                    location = testloc + "/" + filename;

                                    if (!new File(location).exists()) {

                                        if (!new File(location).exists()) {
                                            missingfiles = true;
                                            ErrorLog.addError("No sample files found in " + testloc);

                                        } else {
                                            array.add(new File(location));
                                        }
                                    } else {

                                        array.add(new File(location));
                                    }
                                }

                                File[] files = new File[array.size()];
                                for (int i = 0; i < files.length; i++) {

                                    files[i] = array.get(i);
                                }
                                FileRead filereader = new FileRead(files);
                                filereader.start = (int) drawCanvas.selectedSplit.start;
                                filereader.end = (int) drawCanvas.selectedSplit.end;
                                if (chooser.getFileFilter().equals(chooser.getChoosableFileFilters()[1])) {
                                    filereader.readBAM = true;
                                } else {
                                    filereader.readVCF = true;
                                }
                                filereader.execute();
                                if (missingfiles) {
                                    JOptionPane.showMessageDialog(Main.drawScroll,
                                            "Missing files. Check Tools->View log", "Note",
                                            JOptionPane.INFORMATION_MESSAGE);
                                }

                            }
                        } catch (Exception ex) {
                            ex.printStackTrace();
                        }
                    }

                    return;
                }

                if (vcffiles.length > 0) {
                    path = vcffiles[0].getParent();
                    writeToConfig("DefaultDir=" + path);
                    FileRead filereader = new FileRead(vcffiles);

                    if (chooser.getFileFilter().equals(chooser.getChoosableFileFilters()[0])) {
                        defaultSelectType = "vcf";
                        filereader.start = (int) drawCanvas.selectedSplit.start;
                        filereader.end = (int) drawCanvas.selectedSplit.end;
                        filereader.readVCF = true;
                        filereader.execute();
                    } else if (chooser.getFileFilter().equals(chooser.getChoosableFileFilters()[1])) {
                        defaultSelectType = "bam";
                        filereader.readBAM = true;
                        filereader.execute();
                    } else if (chooser.getFileFilter().equals(chooser.getChoosableFileFilters()[2])) {

                        defaultSelectType = "link";
                        filereader.readBAM = true;
                        filereader.execute();
                    }
                } else {

                    JOptionPane.showMessageDialog(Main.drawScroll,
                            "The file does not exist. The file link may be broken.\nThe problem may also be the Java run time version in Linux.",
                            "Note", JOptionPane.INFORMATION_MESSAGE);
                }
            }
        } catch (Exception ex) {
            ex.printStackTrace();
        }

    } else if (e.getSource() == addcontrols) {
        if (!checkGenome())
            return;
        if (VariantHandler.frame != null) {
            VariantHandler.frame.setState(Frame.ICONIFIED);
        }
        FileDialog fc = new FileDialog(frame, "Choose control file(s)", FileDialog.LOAD);
        fc.setDirectory(Main.controlDir);
        fc.setFile("*.vcf.gz");
        fc.setFilenameFilter(new FilenameFilter() {
            public boolean accept(File dir, String name) {
                return name.toLowerCase().endsWith(".vcf.gz");
            }
        });
        fc.setMultipleMode(true);
        fc.setVisible(true);
        File[] openfiles = fc.getFiles();

        if (openfiles != null && openfiles.length > 0) {

            controlDir = openfiles[0].getParent();
            writeToConfig("DefaultControlDir=" + controlDir);

            Control.addFiles(openfiles);
        }
        if (1 == 1) {
            return;
        }
        JFileChooser chooser = new JFileChooser(controlDir);
        //        JFileChooser chooser = new JFileChooser(path);            
        chooser.setMultiSelectionEnabled(true);
        chooser.setAcceptAllFileFilterUsed(false);
        Control.MyFilter vcfFilter = new Control.MyFilter();
        chooser.addChoosableFileFilter(vcfFilter);

        chooser.setDialogTitle("Add controls");
        chooser.setPreferredSize(
                new Dimension((int) screenSize.getWidth() / 3, (int) screenSize.getHeight() / 3));
        int returnVal = chooser.showOpenDialog((Component) this.getParent());

        if (returnVal == JFileChooser.APPROVE_OPTION) {

            File vcffiles[] = chooser.getSelectedFiles();
            controlDir = vcffiles[0].getParent();
            writeToConfig("DefaultControlDir=" + controlDir);

            if (chooser.getFileFilter().equals(chooser.getChoosableFileFilters()[0])) {
                Control.addFiles(vcffiles);
            }
        }
    } else if (e.getSource() == addtracks) {
        if (!checkGenome())
            return;
        try {
            if (!checkGenome())
                return;
            if (VariantHandler.frame != null) {
                VariantHandler.frame.setState(Frame.ICONIFIED);
            }

            FileDialog fc = new FileDialog(frame, "Choose track file(s)", FileDialog.LOAD);
            fc.setDirectory(Main.trackDir);
            fc.setFile(
                    "*.bed;*.bedgraph.gz;*.gff.gz;*.gff3.gz;*.bigwig;*.bw;*.bigbed;*.bb;*.tsv.gz;*.tsv.bgz;*.txt");
            fc.setFilenameFilter(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toLowerCase().endsWith(".bed") || name.toLowerCase().endsWith(".bed.gz")
                            || name.toLowerCase().endsWith(".bedgraph.gz")
                            || name.toLowerCase().endsWith(".bedgraph.gz")
                            || name.toLowerCase().endsWith(".bedgraph.gz")
                            || name.toLowerCase().endsWith(".gff.gz") || name.toLowerCase().endsWith(".gff3.gz")
                            || name.toLowerCase().endsWith(".bigwig") || name.toLowerCase().endsWith(".bw")
                            || name.toLowerCase().endsWith(".bigbed") || name.toLowerCase().endsWith(".bb")
                            || name.toLowerCase().endsWith(".tsv.gz") || name.toLowerCase().endsWith(".tsv.bgz")
                            || name.toLowerCase().endsWith(".txt");
                }
            });
            fc.setMultipleMode(true);
            fc.setVisible(true);
            File[] openfiles = fc.getFiles();

            if (openfiles != null && openfiles.length > 0) {

                trackDir = openfiles[0].getParent();
                writeToConfig("DefaultTrackDir=" + trackDir);
                FileRead filereader = new FileRead(openfiles);
                filereader.readBED = true;
                filereader.execute();

            } else {
                //Main.showError("File(s) does not exist.", "Error");
            }

        } catch (Exception ex) {
            Main.showError(ex.getMessage(), "Error");
        }
        if (1 == 1) {
            return;
        }
        if (VariantHandler.frame != null) {
            VariantHandler.frame.setState(Frame.ICONIFIED);
        }
        JFileChooser chooser = new JFileChooser(Main.trackDir);
        getText(chooser.getComponents());
        chooser.setMultiSelectionEnabled(true);
        chooser.setAcceptAllFileFilterUsed(false);
        MyFilterBED bedFilter = new MyFilterBED();
        MyFilterTXT txtFilter = new MyFilterTXT();
        chooser.addChoosableFileFilter(bedFilter);
        chooser.addChoosableFileFilter(txtFilter);
        chooser.setDialogTitle("Add tracks");
        chooser.setPreferredSize(
                new Dimension((int) screenSize.getWidth() / 3, (int) screenSize.getHeight() / 3));
        int returnVal = chooser.showOpenDialog((Component) this.getParent());

        try {

            if (returnVal == JFileChooser.APPROVE_OPTION) {

                File bedfiles[] = chooser.getSelectedFiles();
                if (bedfiles[0].exists()) {

                    trackDir = bedfiles[0].getParent();
                    writeToConfig("DefaultTrackDir=" + trackDir);
                    FileRead filereader = new FileRead(bedfiles);
                    filereader.readBED(bedfiles);

                } else {

                    if (Main.chooserText.length() > 5 && Main.chooserText.endsWith(".bed.gz")
                            || Main.chooserText.endsWith(".gff.gz") || Main.chooserText.endsWith(".gff3.gz")
                            || Main.chooserText.endsWith(".bedgraph.gz")) {

                        if (Main.chooserText.startsWith("http://") || Main.chooserText.startsWith("ftp://")) {

                            URL url = new URL(Main.chooserText);
                            SeekableStream stream = SeekableStreamFactory.getInstance().getStreamFor(url);
                            TabixReader tabixReader = null;
                            String index = null;

                            try {
                                tabixReader = new TabixReader(Main.chooserText, Main.chooserText + ".tbi",
                                        stream);
                                index = Main.chooserText + ".tbi";
                            } catch (Exception ex) {
                                try {
                                    tabixReader = new TabixReader(Main.chooserText,
                                            Main.chooserText.substring(0, Main.chooserText.indexOf(".gz"))
                                                    + ".tbi",
                                            stream);
                                    index = Main.chooserText.substring(0, Main.chooserText.indexOf(".gz"))
                                            + ".tbi";
                                } catch (Exception exc) {
                                    exc.printStackTrace();
                                }
                            }
                            if (tabixReader != null && index != null) {

                                FileRead filereader = new FileRead(bedfiles);
                                filereader.readBED(Main.chooserText, index, false);

                                tabixReader.close();
                            }
                        }
                    } else {
                        if (Main.chooserText.contains("://")) {

                            try {
                                //        bbreader = new BBFileReader(Main.chooserText, stream);

                            } catch (Exception ex) {
                                ex.printStackTrace();
                            }

                            //  if(bbreader != null) {

                            FileRead filereader = new FileRead(bedfiles);
                            filereader.readBED(Main.chooserText, "nan", false);

                            //     }
                            //     stream.close();
                        }
                    }
                }
            }

        } catch (Exception ex) {
            ex.printStackTrace();
        }
    } else if (e.getSource() == openProject) {
        if (!checkGenome())
            return;
        if (VariantHandler.frame != null) {
            VariantHandler.frame.setState(Frame.ICONIFIED);
        }
        openProject();
    } else if (e.getSource() == saveProjectAs) {
        if (VariantHandler.frame != null) {
            VariantHandler.frame.setState(Frame.ICONIFIED);
        }
        try {
            File savefile = null;
            FileDialog fs = new FileDialog(frame, "Save project as...", FileDialog.SAVE);
            fs.setDirectory(projectDir);
            fs.setFile("*.ses");
            fs.setFilenameFilter(new FilenameFilter() {
                public boolean accept(File dir, String name) {
                    return name.toLowerCase().endsWith(".ses");
                }
            });
            fs.setVisible(true);

            while (true) {
                String filename = fs.getFile();

                if (filename != null) {
                    savefile = new File(fs.getDirectory() + "/" + filename);
                    projectDir = fs.getDirectory();
                    writeToConfig("DefaultProjectDir=" + projectDir);

                    /* if(!Files.isWritable(Paths.get(savefile.getParent()))) {
                       Main.showError("No permission to write.", "Error");
                       continue;
                     }*/

                    if (!savefile.getAbsolutePath().endsWith(".ses")) {
                        savefile = new File(savefile.getAbsolutePath() + ".ses");
                    }

                    Serializer ser = new Serializer();
                    ser.serialize(savefile);
                    break;
                } else {
                    break;
                }
            }
            if (1 == 1) {
                return;
            }
            JFileChooser chooser = new JFileChooser();
            chooser.setAcceptAllFileFilterUsed(false);
            MyFilterSES sesFilter = new MyFilterSES();
            chooser.addChoosableFileFilter(sesFilter);
            chooser.setDialogTitle("Save project as...");
            int returnVal = chooser.showSaveDialog((Component) this.getParent());

            if (returnVal == JFileChooser.APPROVE_OPTION) {
                File outfile = chooser.getSelectedFile();
                if (!outfile.getAbsolutePath().endsWith(".ses")) {
                    outfile = new File(outfile.getAbsolutePath() + ".ses");
                }

                Serializer ser = new Serializer();
                ser.serialize(outfile);
            }
        } catch (Exception ex) {
            ex.printStackTrace();
        }

    } else if (e.getSource() == saveProject) {
        if (drawCanvas.drawVariables.projectName.equals("Untitled")) {
            saveProjectAs.doClick();
        } else {

            Serializer ser = new Serializer();
            ser.serialize(drawCanvas.drawVariables.projectFile);
        }
    }
    /*      else if(e.getSource() == welcome) {
             WelcomeScreen.main(args);
             WelcomeScreen.frame.setVisible(true);
             WelcomeScreen.frame.setLocation(frame.getLocationOnScreen().x+frame.getWidth()/2 - WelcomeScreen.frame.getWidth()/2, frame.getLocationOnScreen().y+frame.getHeight()/6);
                     
          }*/
}

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Allow the user to select a file, which is expected to be an ontology, and
 * then load the file./*from w w  w . j av a2 s. c o m*/
 */
private void openOntologyFile() {
    JFileChooser fileChooser;
    FileFilter defaultFileFilter = null;
    FileFilter preferredFileFilter = null;
    File chosenFile;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser(lastDirectoryUsed);

    for (FileFilterDefinition filterDefinition : FileFilterDefinition.values()) {
        if (filterDefinition.name().startsWith("ONTOLOGY")) {
            final FileFilter fileFilter = new SuffixFileFilter(filterDefinition.description(),
                    filterDefinition.acceptedSuffixes());
            if (filterDefinition.isPreferredOption()) {
                preferredFileFilter = fileFilter;
            }
            fileChooser.addChoosableFileFilter(fileFilter);
            if (filterDefinition.description().equals(latestChosenRdfFileFilterDescription)) {
                defaultFileFilter = fileFilter;
            }
        }
    }

    if (defaultFileFilter != null) {
        fileChooser.setFileFilter(defaultFileFilter);
    } else if (latestChosenRdfFileFilterDescription != null
            && latestChosenRdfFileFilterDescription.startsWith("All")) {
        fileChooser.setFileFilter(fileChooser.getAcceptAllFileFilter());
    } else if (preferredFileFilter != null) {
        fileChooser.setFileFilter(preferredFileFilter);
    }

    fileChooser.setDialogTitle("Open Assertions File");
    fileChooser.showOpenDialog(this);

    try {
        latestChosenRdfFileFilterDescription = fileChooser.getFileFilter().getDescription();
    } catch (Throwable throwable) {
        LOGGER.warn("Unable to determine which ontology file filter was chosen", throwable);
    }

    chosenFile = fileChooser.getSelectedFile();

    if (chosenFile != null) {
        setupToLoadOntologyFile(new FileSource(chosenFile));
    }
}

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Allow the user to select a file, which is expected to be an ontology, and
 * then load the file./*from   w w  w  .j a va2  s  . c om*/
 */
private void openSparqlQueryFile() {
    JFileChooser fileChooser;
    FileFilter defaultFileFilter = null;
    FileFilter preferredFileFilter = null;
    File chosenFile;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser(lastDirectoryUsed);

    for (FileFilterDefinition filterDefinition : FileFilterDefinition.values()) {
        if (filterDefinition.name().startsWith("SPARQL")) {
            final FileFilter fileFilter = new SuffixFileFilter(filterDefinition.description(),
                    filterDefinition.acceptedSuffixes());
            if (filterDefinition.isPreferredOption()) {
                preferredFileFilter = fileFilter;
            }
            fileChooser.addChoosableFileFilter(fileFilter);
            if (filterDefinition.description().equals(latestChosenSparqlFileFilterDescription)) {
                defaultFileFilter = fileFilter;
            }
        }
    }

    if (defaultFileFilter != null) {
        fileChooser.setFileFilter(defaultFileFilter);
    } else if (latestChosenSparqlFileFilterDescription != null
            && latestChosenSparqlFileFilterDescription.startsWith("All")) {
        fileChooser.setFileFilter(fileChooser.getAcceptAllFileFilter());
    } else if (preferredFileFilter != null) {
        fileChooser.setFileFilter(preferredFileFilter);
    }

    fileChooser.setDialogTitle("Open SPARQL Query File");
    fileChooser.showOpenDialog(this);

    try {
        latestChosenSparqlFileFilterDescription = fileChooser.getFileFilter().getDescription();
    } catch (Throwable throwable) {
        LOGGER.warn("Unable to determine which SPARQL file filter was chosen", throwable);
    }

    chosenFile = fileChooser.getSelectedFile();

    if (chosenFile != null) {
        loadSparqlQueryFile(chosenFile);
    }
}

From source file:com.monead.semantic.workbench.SemanticWorkbench.java

/**
 * Save the text from the SPARQL query text area to a file.
 * //from  w  w w  .ja va 2  s . co m
 */
private void saveSparqlQueryToFile() {
    FileWriter out;
    JFileChooser fileChooser;
    FileFilter defaultFileFilter = null;
    FileFilter preferredFileFilter = null;
    File destinationFile;
    int choice;

    out = null;

    if (lastDirectoryUsed == null) {
        lastDirectoryUsed = new File(".");
    }

    fileChooser = new JFileChooser();

    for (FileFilterDefinition filterDefinition : FileFilterDefinition.values()) {
        if (filterDefinition.name().startsWith("SPARQL")) {
            final FileFilter fileFilter = new SuffixFileFilter(filterDefinition.description(),
                    filterDefinition.acceptedSuffixes());
            if (filterDefinition.isPreferredOption()) {
                preferredFileFilter = fileFilter;
            }
            fileChooser.addChoosableFileFilter(fileFilter);
            if (filterDefinition.description().equals(latestChosenSparqlFileFilterDescription)) {
                defaultFileFilter = fileFilter;
            }
        }
    }

    if (defaultFileFilter != null) {
        fileChooser.setFileFilter(defaultFileFilter);
    } else if (latestChosenSparqlFileFilterDescription != null
            && latestChosenSparqlFileFilterDescription.startsWith("All")) {
        fileChooser.setFileFilter(fileChooser.getAcceptAllFileFilter());
    } else if (preferredFileFilter != null) {
        fileChooser.setFileFilter(preferredFileFilter);
    }

    if (sparqlQueryFile != null) {
        fileChooser.setSelectedFile(sparqlQueryFile);
    } else {
        fileChooser.setSelectedFile(lastDirectoryUsed);
    }

    fileChooser.setDialogTitle("Save SPARQL Query to File");
    choice = fileChooser.showSaveDialog(this);

    try {
        latestChosenSparqlFileFilterDescription = fileChooser.getFileFilter().getDescription();
    } catch (Throwable throwable) {
        LOGGER.warn("Unable to determine which SPARQL file filter was chosen", throwable);
    }

    destinationFile = fileChooser.getSelectedFile();

    // Did not click save, did not select a file or chose a directory
    // So do not write anything
    if (choice != JFileChooser.APPROVE_OPTION || destinationFile == null
            || (destinationFile.exists() && !destinationFile.isFile())) {
        return; // EARLY EXIT!
    }

    // Adjust file suffix if necessary
    final FileFilter fileFilter = fileChooser.getFileFilter();
    if (fileFilter != null && fileFilter instanceof SuffixFileFilter
            && !fileChooser.getFileFilter().accept(destinationFile)) {
        destinationFile = ((SuffixFileFilter) fileFilter).makeWithPrimarySuffix(destinationFile);
    }

    if (okToOverwriteFile(destinationFile)) {

        LOGGER.info("Write SPARQL query to file, " + destinationFile);

        try {
            out = new FileWriter(destinationFile, false);

            if (sparqlServiceUrl.getSelectedIndex() != 0) {

                out.write(
                        "# " + SPARQL_QUERY_SAVE_SERVICE_URL_PARAM + sparqlServiceUrl.getSelectedItem() + "\n");
            } else {
                out.write("# " + SPARQL_QUERY_SAVE_SERVICE_URL_PARAM
                        + SPARQL_QUERY_SAVE_SERVICE_URL_VALUE_FOR_NO_SERVICE_URL + "\n");
            }

            if (defaultGraphUri.getText().trim().length() > 0) {
                out.write("# " + SPARQL_QUERY_SAVE_SERVICE_DEFAULT_GRAPH_PARAM
                        + defaultGraphUri.getText().trim() + "\n");
            }
            out.write(sparqlInput.getText());
            setSparqlQueryFile(destinationFile);
        } catch (IOException ioExc) {
            final String errorMessage = "Unable to write to file: " + destinationFile;
            LOGGER.error(errorMessage, ioExc);
            throw new RuntimeException(errorMessage, ioExc);
        } finally {
            if (out != null) {
                try {
                    out.close();
                } catch (Throwable throwable) {
                    final String errorMessage = "Failed to close output file: " + destinationFile;
                    LOGGER.error(errorMessage, throwable);
                    throw new RuntimeException(errorMessage, throwable);
                }
            }
            setTitle();
        }
    }
}

From source file:src.gui.ItSIMPLE.java

/**
 * @return Returns the planAnalysisFramePanel.
 *///from w w  w.j  a v a2s.  co  m
private ItFramePanel getPlanAnalysisFramePanel() {
    if (planAnalysisFramePanel == null) {
        planAnalysisFramePanel = new ItFramePanel(":: Plan Analysis", ItFramePanel.NO_MINIMIZE_MAXIMIZE);

        // tool bar
        JToolBar chartsToolBar = new JToolBar();
        chartsToolBar.add(new JButton(drawChartAction));

        // charts panel
        chartsPanel = new JPanel();
        chartsPanel.setLayout(new BoxLayout(chartsPanel, BoxLayout.Y_AXIS));

        ItFramePanel variableSelectionPanel = new ItFramePanel(".: Select variables to be tracked",
                ItFramePanel.NO_MINIMIZE_MAXIMIZE);
        //variableSelectionPanel.setBackground(new Color(151,151,157));

        JSplitPane split = new JSplitPane();
        split.setContinuousLayout(true);
        split.setOrientation(JSplitPane.HORIZONTAL_SPLIT);
        split.setDividerLocation(2 * screenSize.height / 3);

        split.setDividerSize(8);
        //split.setPreferredSize(new Dimension(screenSize.width/4-20, screenSize.height/2 - 50));
        //split.setPreferredSize(new Dimension(screenSize.width/4-20, 120));
        split.setLeftComponent(new JScrollPane(variablesPlanTree));
        split.setRightComponent(new JScrollPane(selectedVariablesPlanTree));

        variableSelectionPanel.setContent(split, false);
        //variableSelectionPanel.setParentSplitPane()

        //JPanel variableSelectionPanel  = new JPanel(new BorderLayout());
        //variableSelectionPanel.add(new JScrollPane(variablesPlanTree), BorderLayout.CENTER);
        //variableSelectionPanel.add(new JScrollPane(selectedVariablesPlanTree), BorderLayout.EAST);

        ItFramePanel variableGraphPanel = new ItFramePanel(".: Chart", ItFramePanel.NO_MINIMIZE_MAXIMIZE);
        variableGraphPanel.setContent(chartsPanel, true);

        JSplitPane mainvariablesplit = new JSplitPane();
        mainvariablesplit.setContinuousLayout(true);
        mainvariablesplit.setOrientation(JSplitPane.VERTICAL_SPLIT);
        mainvariablesplit.setDividerLocation(150);
        mainvariablesplit.setDividerSize(8);
        //mainvariablesplit.setPreferredSize(new Dimension(screenSize.width/4-20, screenSize.height/2 - 50));
        mainvariablesplit.setTopComponent(variableSelectionPanel);
        mainvariablesplit.setBottomComponent(variableGraphPanel);

        // main charts panel - used to locate the tool bar above the charts panel
        JPanel mainChartsPanel = new JPanel(new BorderLayout());
        mainChartsPanel.add(chartsToolBar, BorderLayout.NORTH);
        //mainChartsPanel.add(new JScrollPane(chartsPanel), BorderLayout.CENTER);
        mainChartsPanel.add(mainvariablesplit, BorderLayout.CENTER);

        //Results
        planInfoEditorPane = new JEditorPane();
        planInfoEditorPane.setContentType("text/html");
        planInfoEditorPane.setEditable(false);
        planInfoEditorPane.setCursor(new Cursor(Cursor.TEXT_CURSOR));
        planInfoEditorPane.setBackground(Color.WHITE);

        JPanel resultsPanel = new JPanel(new BorderLayout());

        JToolBar resultsToolBar = new JToolBar();
        resultsToolBar.setRollover(true);

        JButton planReportButton = new JButton("View Full Report",
                new ImageIcon("resources/images/viewreport.png"));
        planReportButton.setToolTipText("<html>View full plan report.<br> For multiple plans you will need "
                + "access to the Internet.<br> The components used in the report require such access (no data is "
                + "sent through the Internet).</html>");
        planReportButton.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                //Opens html with defaut browser
                String path = "resources/report/Report.html";
                File report = new File(path);
                path = report.getAbsolutePath();
                try {
                    BrowserLauncher launcher = new BrowserLauncher();
                    launcher.openURLinBrowser("file://" + path);
                } catch (BrowserLaunchingInitializingException ex) {
                    Logger.getLogger(ItSIMPLE.class.getName()).log(Level.SEVERE, null, ex);
                    appendOutputPanelText("ERROR. Problem while trying to open the default browser. \n");
                } catch (UnsupportedOperatingSystemException ex) {
                    Logger.getLogger(ItSIMPLE.class.getName()).log(Level.SEVERE, null, ex);
                    appendOutputPanelText("ERROR. Problem while trying to open the default browser. \n");
                }
            }
        });
        resultsToolBar.add(planReportButton);

        resultsToolBar.addSeparator();
        JButton planReportDataButton = new JButton("Save Report Data",
                new ImageIcon("resources/images/savePDDL.png"));
        planReportDataButton.setToolTipText("<html>Save report data to file</html>");
        planReportDataButton.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                //Save report data
                if (solveResult != null) {
                    Element lastOpenFolderElement = itSettings.getChild("generalSettings")
                            .getChild("lastOpenFolder");
                    JFileChooser fc = new JFileChooser(lastOpenFolderElement.getText());
                    fc.setDialogTitle("Save Report Data");
                    fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
                    fc.setFileFilter(new XMLFileFilter());

                    int returnVal = fc.showSaveDialog(ItSIMPLE.this);
                    if (returnVal == JFileChooser.APPROVE_OPTION) {
                        File selectedFile = fc.getSelectedFile();
                        String path = selectedFile.getPath();

                        if (!path.toLowerCase().endsWith(".xml")) {
                            path += ".xml";
                        }
                        //save file (xml)
                        try {
                            FileWriter file = new FileWriter(path);
                            file.write(XMLUtilities.toString(solveResult));
                            file.close();
                        } catch (IOException e1) {
                            e1.printStackTrace();
                        }

                        //Save as a last open folder
                        String folder = selectedFile.getParent();
                        //Element lastOpenFolderElement = itSettings.getChild("generalSettings").getChild("lastOpenFolder");
                        lastOpenFolderElement.setText(folder);
                        XMLUtilities.writeToFile("resources/settings/itSettings.xml", itSettings.getDocument());

                        //Ask if the user wants to save plans individually too.
                        boolean needToSavePlans = false;
                        int option = JOptionPane.showOptionDialog(instance,
                                "<html><center>Do you also want to save the plans"
                                        + "<br>in individual files?</center></html>",
                                "Save plans", JOptionPane.YES_NO_OPTION, JOptionPane.QUESTION_MESSAGE, null,
                                null, null);
                        switch (option) {
                        case JOptionPane.YES_OPTION: {
                            needToSavePlans = true;
                        }
                            break;
                        case JOptionPane.NO_OPTION: {
                            needToSavePlans = false;
                        }
                            break;
                        }

                        if (needToSavePlans) {
                            //Close Open tabs
                            List<?> problems = null;
                            try {
                                XPath ppath = new JDOMXPath("project/domains/domain/problems/problem");
                                problems = ppath.selectNodes(solveResult);
                            } catch (JaxenException e2) {
                                e2.printStackTrace();
                            }

                            for (int i = 0; i < problems.size(); i++) {
                                Element problem = (Element) problems.get(i);
                                //create a folder for each problem and put all plans inside as xml files
                                String folderName = problem.getChildText("name");
                                String folderPath = selectedFile.getAbsolutePath()
                                        .replace(selectedFile.getName(), folderName);
                                //System.out.println(folderPath);
                                File planfolder = new File(folderPath);
                                boolean canSavePlan = false;
                                try {
                                    if (planfolder.mkdir()) {
                                        System.out.println("Directory '" + folderPath + "' created.");
                                        canSavePlan = true;
                                    } else {
                                        System.out.println("Directory '" + folderPath + "' was not created.");
                                    }

                                } catch (Exception ep) {
                                    ep.printStackTrace();
                                }

                                if (canSavePlan) {
                                    Element plans = problem.getChild("plans");
                                    for (Iterator<Element> it = plans.getChildren("xmlPlan").iterator(); it
                                            .hasNext();) {
                                        Element eaplan = it.next();
                                        Element theplanner = eaplan.getChild("planner");
                                        //save file (xml)
                                        String planFileName = "solution" + theplanner.getChildText("name") + "-"
                                                + theplanner.getChildText("version") + "-"
                                                + Integer.toString(plans.getChildren().indexOf(eaplan))
                                                + ".xml";
                                        String planPath = folderPath + File.separator + planFileName;
                                        /*
                                        try {
                                            FileWriter planfile = new FileWriter(planPath);
                                            planfile.write(XMLUtilities.toString(eaplan));
                                            planfile.close();
                                            System.out.println("File '" + planPath + "' created.");
                                        } catch (IOException e1) {
                                            e1.printStackTrace();
                                        }
                                        *
                                        */
                                        if (eaplan.getChild("plan").getChildren().size() > 0) {

                                            //TODO: save the plan in PDDL too. It should be done through the XPDDL/PDDL classes
                                            String pddlplan = ToXPDDL.XMLtoXPDDLPlan(eaplan);
                                            String planFileNamePDDL = "solution"
                                                    + theplanner.getChildText("name") + "-"
                                                    + theplanner.getChildText("version") + "-"
                                                    + Integer.toString(plans.getChildren().indexOf(eaplan))
                                                    + ".pddl";
                                            String planPathPDDL = folderPath + File.separator
                                                    + planFileNamePDDL;

                                            //String cfolderPath = selectedFile.getAbsolutePath().replace(selectedFile.getName(), "");
                                            //String planFileNamePDDL = theplanner.getChildText("name")+"-"+theplanner.getChildText("version") + "-" + folderName+"-solution.pddl";
                                            //String planPathPDDL = cfolderPath + File.separator + planFileNamePDDL;
                                            //if (!theplanner.getChildText("name").contains("MIPS")){
                                            try {
                                                FileWriter planfile = new FileWriter(planPathPDDL);
                                                planfile.write(pddlplan);
                                                planfile.close();
                                                System.out.println("File '" + planPathPDDL + "' created.");
                                            } catch (IOException e1) {
                                                e1.printStackTrace();
                                            }
                                        } //}

                                    }

                                }

                            }
                        }

                    }
                } else {
                    appendOutputPanelText(">> No report data available to save! \n");
                }

            }
        });
        resultsToolBar.add(planReportDataButton);

        JButton openPlanReportDataButton = new JButton("Open Report Data",
                new ImageIcon("resources/images/openreport.png"));
        openPlanReportDataButton.setToolTipText("<html>Open report data to file</html>");
        openPlanReportDataButton.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                planSimStatusBar.setText("Status: Opening File...");
                appendOutputPanelText(">> Opening File... \n");
                //Open report data
                Element lastOpenFolderElement = itSettings.getChild("generalSettings")
                        .getChild("lastOpenFolder");
                JFileChooser fc = new JFileChooser(lastOpenFolderElement.getText());
                fc.setDialogTitle("Open Report Data");
                fc.setFileSelectionMode(JFileChooser.FILES_ONLY);
                fc.setFileFilter(new XMLFileFilter());

                int returnVal = fc.showOpenDialog(ItSIMPLE.this);
                if (returnVal == JFileChooser.APPROVE_OPTION) {

                    File file = fc.getSelectedFile();
                    // Get itSIMPLE itSettings from itSettings.xml
                    org.jdom.Document resultsDoc = null;
                    try {
                        resultsDoc = XMLUtilities.readFromFile(file.getPath());
                        solveResult = resultsDoc.getRootElement();
                        //XMLUtilities.printXML(solveResult);
                        if (solveResult.getName().equals("projects")) {

                            String report = PlanAnalyzer.generatePlannersComparisonReport(solveResult);
                            String comparisonReport = PlanAnalyzer
                                    .generateFullPlannersComparisonReport(solveResult);
                            //Save Comparison Report file
                            saveFile("resources/report/Report.html", comparisonReport);
                            setPlanInfoPanelText(report);
                            setPlanEvaluationInfoPanelText("");
                            appendOutputPanelText(">> Report data read! \n");

                            //My experiments
                            PlanAnalyzer.myAnalysis(itPlanners.getChild("planners"), solveResult);
                        }
                    } catch (Exception e1) {
                        e1.printStackTrace();
                    }

                    //Save as a last open folder
                    String folder = fc.getSelectedFile().getParent();
                    lastOpenFolderElement.setText(folder);
                    XMLUtilities.writeToFile("resources/settings/itSettings.xml", itSettings.getDocument());

                } else {
                    planSimStatusBar.setText("Status:");
                    appendOutputPanelText(">> Canceled \n");
                }

            }
        });
        resultsToolBar.add(openPlanReportDataButton);

        JButton compareProjectReportDataButton = new JButton("Compare Project Data",
                new ImageIcon("resources/images/compare.png"));
        compareProjectReportDataButton.setToolTipText(
                "<html>Compare different project report data <br> This is commonly use to compare diferent domain models with different adjustments.<br>"
                        + "One project data must be chosen as a reference; others will be compared to this referencial one.</html>");
        compareProjectReportDataButton.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {

                final ProjectComparisonDialog dialog = new ProjectComparisonDialog();
                dialog.setVisible(true);

                final List<String> files = dialog.getFiles();

                if (files.size() > 1) {

                    new Thread() {
                        public void run() {
                            appendOutputPanelText(">> Project comparison report requested. Processing... \n");

                            planSimStatusBar.setText("Status: Reading files ...");
                            appendOutputPanelText(">> Reading files ... \n");

                            //base project file
                            String baseFileName = files.get(0);
                            appendOutputPanelText(">> Reading file '" + baseFileName + "' \n");
                            org.jdom.Document baseProjectDoc = null;
                            try {
                                baseProjectDoc = XMLUtilities.readFromFile(baseFileName);
                            } catch (Exception ec) {
                                ec.printStackTrace();
                            }
                            Element baseProject = null;
                            if (baseProjectDoc != null) {
                                baseProject = baseProjectDoc.getRootElement().getChild("project");
                            }

                            //The comparible projects
                            List<Element> comparableProjects = new ArrayList<Element>();

                            for (int i = 1; i < files.size(); i++) {
                                String eafile = files.get(i);
                                appendOutputPanelText(">> Reading file '" + eafile + "' \n");
                                org.jdom.Document eaProjectDoc = null;
                                try {
                                    eaProjectDoc = XMLUtilities.readFromFile(eafile);
                                } catch (Exception ec) {
                                    ec.printStackTrace();
                                }
                                if (eaProjectDoc != null) {
                                    comparableProjects.add(eaProjectDoc.getRootElement().getChild("project"));
                                }

                            }
                            appendOutputPanelText(">> Files read. Building report... \n");

                            String comparisonReport = PlanAnalyzer.generateProjectComparisonReport(baseProject,
                                    comparableProjects);
                            saveFile("resources/report/Report.html", comparisonReport);
                            appendOutputPanelText(
                                    ">> Project comparison report generated. Press 'View Full Report'\n");
                            appendOutputPanelText(" \n");

                        }
                    }.start();

                }

            }
        });
        resultsToolBar.add(compareProjectReportDataButton);

        resultsPanel.add(resultsToolBar, BorderLayout.NORTH);
        resultsPanel.add(new JScrollPane(planInfoEditorPane), BorderLayout.CENTER);

        JTabbedPane planAnalysisTabbedPane = new JTabbedPane();
        planAnalysisTabbedPane.addTab("Results", resultsPanel);
        planAnalysisTabbedPane.addTab("Variable Tracking", mainChartsPanel);
        planAnalysisTabbedPane.addTab("Movie Maker", getMovieMakerPanel());
        planAnalysisTabbedPane.addTab("Plan Evaluation", getPlanEvaluationPanel());
        planAnalysisTabbedPane.addTab("Plan Database", getPlanDatabasePanel());
        planAnalysisTabbedPane.addTab("Rationale Database", getRationaleDatabasePanel());

        JPanel planAnalysisPanel = new JPanel(new BorderLayout());
        //planAnalysisPanel.add(chartsToolBar, BorderLayout.NORTH);
        planAnalysisPanel.add(planAnalysisTabbedPane, BorderLayout.CENTER);
        planAnalysisFramePanel.setContent(planAnalysisPanel, false);

    }

    return planAnalysisFramePanel;
}

From source file:nick.gaImageRecognitionGui.panel.JPanelTestSavedConfiguration.java

private void jButtonSelectImagesFolderActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButtonSelectImagesFolderActionPerformed
    JFileChooser fc = new JFileChooser();

    fc.setCurrentDirectory(new java.io.File("."));
    fc.setDialogTitle(StringConstants.SELECT_TEST_IMAGES_FOLDER);
    fc.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
    fc.setAcceptAllFileFilterUsed(false);

    if (fc.showOpenDialog(this) == JFileChooser.APPROVE_OPTION) {
        String path = fc.getSelectedFile().getPath();
        RuntimeConfiguration.getInstance().setTestImagesFolderLocation(path);
        testImagesFolderLocation.setText(path);
    } else {//from  www .  j a  v  a 2s.c o  m
        String path = RuntimeConfiguration.getInstance().getTestImagesFolderLocation();
        if (StringUtils.isNotBlank(path)) {
            testImagesFolderLocation.setText(path);
        }
    }
}

From source file:nick.gaImageRecognitionGui.panel.JPanelTestSavedConfiguration.java

private void jButtonSelectConfigurationFolderActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jButtonSelectConfigurationFolderActionPerformed
    JFileChooser fc = new JFileChooser();

    fc.setCurrentDirectory(new java.io.File("."));
    fc.setDialogTitle(StringConstants.SELECT_TEST_IMAGES_FOLDER);
    fc.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY);
    fc.setAcceptAllFileFilterUsed(false);

    if (fc.showOpenDialog(this) == JFileChooser.APPROVE_OPTION) {
        String path = fc.getSelectedFile().getPath();
        RuntimeConfiguration.getInstance().setTestConfigurationsFolderLocation(path);
        configurationsFolderLocation.setText(path);
    } else {/*from ww  w  .  ja  v a  2 s . co m*/
        String path = RuntimeConfiguration.getInstance().getTestConfigurationsFolderLocation();
        if (StringUtils.isNotBlank(path)) {
            configurationsFolderLocation.setText(path);
        }
    }
}