List of usage examples for javax.swing JFileChooser FILES_AND_DIRECTORIES
int FILES_AND_DIRECTORIES
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From source file:nitf.imagej.NITF_Reader.java
public NITF_Reader() { super("NITF Reader"); Java2.setSystemLookAndFeel();/*w w w . ja v a 2 s . c om*/ fileChooser = new JFileChooser(); fileChooser.setDialogTitle("Open NITF Image(s)..."); String dir; if ((dir = Prefs.get(NITF_READER_DIR, null)) != null) fileChooser.setCurrentDirectory(new File(dir)); fileChooser.setMultiSelectionEnabled(true); fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); fileChooser.setAcceptAllFileFilterUsed(true); fileFilter = new FileFilter() { public boolean accept(File f) { String name = f.getName().toLowerCase().trim(); return f.isDirectory() || ((name.endsWith("ntf") || name.endsWith("nitf") || name.endsWith("nsf")) && f.canRead()); } public String getDescription() { return "NITF Images (*.nitf,*.ntf, *.nsif)"; } }; fileChooser.setFileFilter(fileFilter); }
From source file:nz.co.fortytwo.freeboard.installer.InstalManager.java
private void addWidgets() { JTabbedPane tabPane = new JTabbedPane(); this.add(tabPane, BorderLayout.CENTER); // upload to arduinos JPanel uploadPanel = new JPanel(); uploadPanel.setLayout(new BorderLayout()); uploadPanel.add(uploadingPanel, BorderLayout.CENTER); final JPanel westUploadPanel = new JPanel(new MigLayout()); String info = "\nUse this panel to upload compiled code to the arduino devices.\n\n" + "NOTE: directories with spaces will probably not work!\n\n" + "First select the base directory of your Arduino IDE installation, eg C:/devtools/arduino-1.5.2\n\n" + "Then select target files to upload, these are ended in '.hex'\n" + "\nand can be downloaded from github (https://github.com/rob42),\n" + " see the 'Release*' sub-directories\n\n" + "Output of the process will display in the right-side window\n\n"; JTextArea jTextInfo = new JTextArea(info); jTextInfo.setEditable(false);/*from w ww. ja va 2 s . co m*/ westUploadPanel.add(jTextInfo, "span,wrap"); westUploadPanel.add(new JLabel("Select Arduino IDE directory:"), "wrap"); arduinoDirTextField.setEditable(false); westUploadPanel.add(arduinoDirTextField, "span 2"); arduinoIdeChooser.setApproveButtonText("Select"); arduinoIdeChooser.setAcceptAllFileFilterUsed(false); arduinoIdeChooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); arduinoIdeChooser.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent evt) { if (JFileChooser.APPROVE_SELECTION.equals(evt.getActionCommand())) { toolsDir = new File(arduinoIdeChooser.getSelectedFile(), File.separator + "hardware" + File.separator + "tools" + File.separator); if (!toolsDir.exists()) { toolsDir = null; JOptionPane.showMessageDialog(westUploadPanel, "Not a valid Arduino IDE directory"); return; } arduinoDirTextField.setText(arduinoIdeChooser.getSelectedFile().getAbsolutePath()); } } }); JButton arduinoDirButton = new JButton("Select"); arduinoDirButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { arduinoIdeChooser.showDialog(westUploadPanel, "Select"); } }); westUploadPanel.add(arduinoDirButton, "wrap"); westUploadPanel.add(new JLabel("Select comm port:")); westUploadPanel.add(portComboBox, "wrap"); westUploadPanel.add(new JLabel("Select device:"), "gap unrelated"); westUploadPanel.add(deviceComboBox, "wrap"); hexFileChooser.setApproveButtonText("Upload"); hexFileChooser.setAcceptAllFileFilterUsed(false); hexFileChooser.addChoosableFileFilter(new FileFilter() { @Override public String getDescription() { return "*.hex - Hex file"; } @Override public boolean accept(File f) { if (f.isDirectory()) { return true; } if (f.getName().toUpperCase().endsWith(".HEX")) { return true; } return false; } }); westUploadPanel.add(hexFileChooser, "span, wrap"); uploadPanel.add(westUploadPanel, BorderLayout.WEST); tabPane.addTab("Upload", uploadPanel); // charts JPanel chartPanel = new JPanel(); chartPanel.setLayout(new BorderLayout()); FileNameExtensionFilter filter = new FileNameExtensionFilter("Charts", "tiff", "kap", "KAP", "TIFF", "tif", "TIF"); chartFileChooser.setFileFilter(filter); chartFileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); chartFileChooser.setMultiSelectionEnabled(true); final JPanel chartWestPanel = new JPanel(new MigLayout()); String info2 = "\nUse this panel to convert charts into the correct format for FreeBoard.\n" + "\nYou need to select the charts or directories containing charts, then click 'Process'.\n " + "\nThe results will be in a directory with the same name as the chart, and the chart " + "\ndirectory will also be compressed into a zip file ready to transfer to your FreeBoard " + "\nserver\n" + "\nOutput of the process will display in the right-side window\n\n"; JTextArea jTextInfo2 = new JTextArea(info2); jTextInfo2.setEditable(false); chartWestPanel.add(jTextInfo2, "wrap"); chartFileChooser.setApproveButtonText("Process"); chartWestPanel.add(chartFileChooser, "span,wrap"); final JPanel loggingPanel = new JPanel(new MigLayout()); loggingGroup.add(infoButton); loggingGroup.add(debugButton); debugButton.setSelected(logger.isDebugEnabled()); infoButton.setSelected(!logger.isDebugEnabled()); infoButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { if (infoButton.isSelected()) { LogManager.getRootLogger().setLevel(Level.INFO); } } }); debugButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { if (debugButton.isSelected()) { LogManager.getRootLogger().setLevel(Level.DEBUG); } } }); loggingPanel.add(new JLabel("Logging Level")); loggingPanel.add(infoButton); loggingPanel.add(debugButton); chartWestPanel.add(loggingPanel, "span,wrap"); final JPanel transparentPanel = new JPanel(new MigLayout()); charsetGroup.add(utf8Button); charsetGroup.add(iso8859Button); iso8859Button.setSelected(logger.isDebugEnabled()); utf8Button.setSelected(!logger.isDebugEnabled()); utf8Button.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { if (utf8Button.isSelected()) { charset = "UTF-8"; } } }); iso8859Button.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { if (iso8859Button.isSelected()) { charset = "ISO-8859-1"; } } }); transparentPanel.add(new JLabel("KAP Character set:")); transparentPanel.add(utf8Button); transparentPanel.add(iso8859Button); chartWestPanel.add(transparentPanel); chartPanel.add(chartWestPanel, BorderLayout.WEST); chartPanel.add(processingPanel, BorderLayout.CENTER); tabPane.addTab("Charts", chartPanel); // IMU calibration JPanel calPanel = new JPanel(); calPanel.setLayout(new BorderLayout()); JPanel westCalPanel = new JPanel(new MigLayout()); String info3 = "\nUse this panel to calibrate your ArduIMU.\n" + "\nYou should do this as near to the final location as possible,\n" + "and like all compasses, as far from wires and magnetic materials \n" + "as possible.\n" + "\nSelect your comm port, then click 'Start'.\n " + "\nSmoothly and steadily rotate the ArduIMU around all 3 axes (x,y,z)\n" + "several times. Then press stop and the calibration will be performed and\n" + "uploaded to the ArduIMU\n\n" + "Output of the process will display in the right-side window\n\n"; JTextArea jTextInfo3 = new JTextArea(info3); jTextInfo3.setEditable(false); westCalPanel.add(jTextInfo3, "span, wrap"); westCalPanel.add(new JLabel("Select comm port:")); westCalPanel.add(portComboBox1, "wrap"); JButton startCal = new JButton("Start"); startCal.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { calibrationPanel.process((String) portComboBox.getSelectedItem()); } }); westCalPanel.add(startCal); JButton stopCal = new JButton("Stop"); stopCal.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { calibrationPanel.stopProcess(); } }); westCalPanel.add(stopCal); calPanel.add(westCalPanel, BorderLayout.WEST); calPanel.add(calibrationPanel, BorderLayout.CENTER); tabPane.addTab("Calibration", calPanel); }
From source file:ome.formats.importer.gui.FileQueueChooser.java
/** * File chooser on the file picker tab of the importer * /*www . j av a2 s . c o m*/ * @param config ImportConfig * @param scanReader OmeroWrapper */ FileQueueChooser(ImportConfig config, OMEROWrapper scanReader) { try { JPanel fp = null; JToolBar tb = null; String refreshIcon = "gfx/recycled12.png"; refreshBtn = GuiCommonElements.addBasicButton("Refresh ", refreshIcon, null); refreshBtn.setActionCommand(REFRESHED); refreshBtn.addActionListener(this); JPanel panel = new JPanel(); // Set up the main panel for tPane, quit, and send buttons double mainTable[][] = { { 10, TableLayout.FILL, TableLayout.PREFERRED, TableLayout.FILL, 10 }, // columns { TableLayout.PREFERRED } }; // rows TableLayout tl = new TableLayout(mainTable); panel.setLayout(tl); // Here's a nice little pieces of test code to find all components if (DEBUG) { try { Component[] components = this.getComponents(); Component component = null; System.err.println("Components: " + components.length); for (int i = 0; i < components.length; i++) { component = components[i]; System.err.println("Component " + i + " = " + component.getClass()); } } catch (Exception e) { log.info("component exception ignore"); } } if (laf.contains("AquaLookAndFeel")) { //Do Aqua implimentation fp = (JPanel) this.getComponent(1); fp.setLayout(new BoxLayout(fp, BoxLayout.X_AXIS)); fp.add(refreshBtn); } else if (laf.contains("QuaquaLookAndFeel")) { //do Quaqua implimentation fp = (JPanel) this.getComponent(1); panel.add(refreshBtn, "1,0,C,C"); panel.add(fp.getComponent(0), "2,0,C,C"); fp.add(panel, BorderLayout.NORTH); } else if (laf.contains("Windows")) { try { //Do windows implimentation tb = (JToolBar) this.getComponent(1); refreshBtn.setToolTipText("Refresh"); refreshBtn.setText(null); tb.add(refreshBtn, 8); } catch (Exception e) { log.info("Exception ignored."); } } /* Disabled temporarily */ else if (laf.contains("MetalLookAndFeel")) { //Do Metal implimentation JPanel prefp = (JPanel) this.getComponent(0); fp = (JPanel) prefp.getComponent(0); refreshBtn.setToolTipText("Refresh"); refreshBtn.setText(null); Dimension size = new Dimension(24, 24); refreshBtn.setMaximumSize(size); refreshBtn.setPreferredSize(size); refreshBtn.setMinimumSize(size); refreshBtn.setSize(size); fp.add(Box.createRigidArea(new Dimension(5, 0))); fp.add(refreshBtn); } else if (laf.contains("GTKLookAndFeel")) { //do GTK implimentation fp = (JPanel) this.getComponent(0); refreshBtn.setIcon(null); fp.add(refreshBtn); } else if (laf.contains("MotifLookAndFeel")) { //do Motif implimentation fp = (JPanel) this.getComponent(0); fp.add(refreshBtn); } if (fp != null && DEBUG == true) { fp.setBorder(BorderFactory.createCompoundBorder(BorderFactory.createLineBorder(Color.red), fp.getBorder())); System.err.println(fp.getLayout()); } if (tb != null && DEBUG == true) { tb.setBorder(BorderFactory.createCompoundBorder(BorderFactory.createLineBorder(Color.red), tb.getBorder())); System.err.println(tb.getLayout()); } } catch (ArrayIndexOutOfBoundsException e) { } File dir = null; if (config != null) dir = config.savedDirectory.get(); if (dir != null) { this.setCurrentDirectory(dir); } else { this.setCurrentDirectory(this.getFileSystemView().getHomeDirectory()); } this.setControlButtonsAreShown(false); this.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); this.setMultiSelectionEnabled(true); this.setDragEnabled(true); setAcceptAllFileFilterUsed(false); FileFilter[] originalFF = null; int readerFFSize = 0; if (scanReader != null) { originalFF = loci.formats.gui.GUITools.buildFileFilters(scanReader.getImageReader()); FileFilter filter; List<FileFilter> extensionFilters = new ArrayList<FileFilter>(); for (int i = 0; i < originalFF.length; i++) { filter = originalFF[i]; if (filter instanceof ComboFileFilter) { ComboFileFilter cff = (ComboFileFilter) filter; extensionFilters.add(cff); extensionFilters.addAll(Arrays.asList(cff.getFilters())); break; } } if (extensionFilters != null) { originalFF = extensionFilters.toArray(new FileFilter[extensionFilters.size()]); } readerFFSize = originalFF.length; } FileFilter[] ff = new FileFilter[readerFFSize + 7]; ff[0] = new DashFileFilter(); ff[readerFFSize + 1] = new DashFileFilter(); ff[readerFFSize + 2] = new R3DNewFileFilter(); ff[readerFFSize + 3] = new R3DOldFileFilter(); ff[readerFFSize + 4] = new D3DNewFileFilter(); ff[readerFFSize + 5] = new D3DOldFileFilter(); ff[readerFFSize + 6] = new D3DNPrjFileFilter(); if (originalFF != null) System.arraycopy(originalFF, 0, ff, 1, originalFF.length); //this.addChoosableFileFilter(new DashFileFilter()); //FileFilter combo = null; for (int i = 0; i < ff.length; i++) this.addChoosableFileFilter(ff[i]); this.setFileFilter(ff[1]); //Retrieve all JLists and JTables from the fileChooser fileListObjects = getFileListObjects(this); //For now, assume the first list/table found is the correct one //(this will need to be adjusted if LAF bugs crop up) //Shouldn't break anything since dblclick will just stop working if //this changes for some reason if (fileListObjects.length > 0 && !laf.contains("Windows")) { fileList = fileListObjects[0]; MouseCommand mc = new MouseCommand(); fileList.addMouseListener(mc); } }
From source file:org.apache.cayenne.modeler.action.ProjectOpener.java
File newProjectDir(Frame f, String location, FileFilter filter) {
// configure dialog
setDialogTitle("Select Project Directory");
setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES);
setCurrentDirectory(getDefaultStartDir());
// preselect current directory
if (getCurrentDirectory() != null) {
setSelectedFile(getCurrentDirectory());
}// w w w . j a v a 2 s . c o m
// configure filters
resetChoosableFileFilters();
// allow users to see directories with cayenne.xml files
addChoosableFileFilter(filter);
File selectedDir;
while (true) {
int status = showDialog(f, "Select");
selectedDir = getSelectedFile();
if (status != JFileChooser.APPROVE_OPTION || selectedDir == null) {
logObj.info("Save canceled.");
return null;
}
// normalize selection
logObj.info("Selected: " + selectedDir);
if (!selectedDir.isDirectory()) {
selectedDir = getSelectedFile().getParentFile();
}
// check for overwrite
File projectFile = new File(selectedDir, location);
if (projectFile.exists()) {
OverwriteDialog dialog = new OverwriteDialog(projectFile, f);
dialog.show();
if (dialog.shouldOverwrite()) {
break;
} else if (dialog.shouldSelectAnother()) {
continue;
} else {
// canceled
return null;
}
} else {
break;
}
}
return selectedDir;
}
From source file:org.eurocarbdb.application.glycoworkbench.plugin.s3.Cockpit.java
/** * Event handler for this application, handles all menu items. *//*from ww w .j a v a 2s. co m*/ public void actionPerformed(ActionEvent event) { // Service Menu Events if ("LoginEvent".equals(event.getActionCommand())) { loginEvent(null); } else if ("LogoutEvent".equals(event.getActionCommand())) { logoutEvent(); } else if (event.getActionCommand() != null && event.getActionCommand().startsWith("LoginSwitch")) { String loginName = event.getActionCommand().substring("LoginSwitch:".length()); AWSCredentials awsCredentials = (AWSCredentials) loginAwsCredentialsMap.get(loginName); loginEvent(awsCredentials); } else if ("QuitEvent".equals(event.getActionCommand())) { System.exit(0); } // Bucket Events. else if ("ViewBucketProperties".equals(event.getActionCommand())) { listBucketProperties(); } else if ("RefreshBuckets".equals(event.getActionCommand())) { listAllBuckets(); } else if ("CreateBucket".equals(event.getActionCommand())) { createBucketAction(); } else if ("DeleteBucket".equals(event.getActionCommand())) { deleteSelectedBucket(); } else if ("ManageDistributions".equals(event.getActionCommand())) { S3Bucket[] buckets = bucketTableModel.getBuckets(); String[] bucketNames = new String[buckets.length]; for (int i = 0; i < buckets.length; i++) { bucketNames[i] = buckets[i].getName(); } ManageDistributionsDialog.showDialog(ownerFrame, cloudFrontService, bucketNames, this); } else if ("AddThirdPartyBucket".equals(event.getActionCommand())) { addThirdPartyBucket(); } else if ("UpdateBucketACL".equals(event.getActionCommand())) { updateBucketAccessControlList(); } else if ("UpdateBucketRequesterPaysStatus".equals(event.getActionCommand())) { updateBucketRequesterPaysSetting(); } // Object Events else if ("ViewOrModifyObjectAttributes".equals(event.getActionCommand())) { displayObjectsAttributesDialog(); } else if ("CopyObjects".equals(event.getActionCommand())) { copyObjects(); } else if ("RefreshObjects".equals(event.getActionCommand())) { listObjects(); } else if ("UpdateObjectACL".equals(event.getActionCommand())) { displayAclModificationDialog(); } else if ("GeneratePublicGetURLs".equals(event.getActionCommand())) { generatePublicGetUrls(); } else if ("GenerateTorrentURL".equals(event.getActionCommand())) { generateTorrentUrl(); } else if ("DeleteObjects".equals(event.getActionCommand())) { deleteSelectedObjects(); } else if ("DownloadObjects".equals(event.getActionCommand())) { downloadSelectedObjects(); } else if ("UploadFiles".equals(event.getActionCommand())) { JFileChooser fileChooser = new JFileChooser(); fileChooser.setMultiSelectionEnabled(true); fileChooser.setDialogTitle("Choose files to upload"); fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); fileChooser.setApproveButtonText("Upload files"); fileChooser.setCurrentDirectory(fileChoosersLastUploadDirectory); int returnVal = fileChooser.showOpenDialog(ownerFrame); if (returnVal != JFileChooser.APPROVE_OPTION) { return; } final File[] uploadFiles = fileChooser.getSelectedFiles(); if (uploadFiles.length == 0) { return; } // Save the chosen directory location for next time. fileChoosersLastUploadDirectory = uploadFiles[0].getParentFile(); uploadFiles(uploadFiles); } else if (event.getSource().equals(filterObjectsCheckBox)) { if (filterObjectsCheckBox.isSelected()) { filterObjectsPanel.setVisible(true); } else { filterObjectsPanel.setVisible(false); filterObjectsPrefix.setText(""); if (filterObjectsDelimiter.getSelectedIndex() != 0) { filterObjectsDelimiter.setSelectedIndex(0); } } } // Tools events else if ("BucketLogging".equals(event.getActionCommand())) { S3Bucket[] buckets = bucketTableModel.getBuckets(); BucketLoggingDialog.showDialog(ownerFrame, s3ServiceMulti.getS3Service(), buckets, this); } // Preference Events else if ("PreferencesDialog".equals(event.getActionCommand())) { PreferencesDialog.showDialog(cockpitPreferences, ownerFrame, this); // Save a user's preferences if requested, otherwise wipe any existing preferences file. File cockpitPreferencesPropertiesFile = new File(cockpitHomeDirectory, Constants.COCKPIT_PROPERTIES_FILENAME); if (cockpitPreferences.isRememberPreferences()) { try { Properties properties = cockpitPreferences.toProperties(); if (!cockpitHomeDirectory.exists()) { cockpitHomeDirectory.mkdir(); } properties.list(new PrintStream(new FileOutputStream(cockpitPreferencesPropertiesFile))); } catch (IOException e) { String message = "Unable to save your preferences"; log.error(message, e); ErrorDialog.showDialog(ownerFrame, this, message, e); } } else if (cockpitPreferencesPropertiesFile.exists()) { // User elected not to store preferences, delete the existing preferences file. cockpitPreferencesPropertiesFile.delete(); } if (cockpitPreferences.isEncryptionPasswordSet()) { try { encryptionUtil = new EncryptionUtil(cockpitPreferences.getEncryptionPassword(), cockpitPreferences.getEncryptionAlgorithm(), EncryptionUtil.DEFAULT_VERSION); } catch (Exception e) { String message = "Unable to start encryption utility"; log.error(message, e); ErrorDialog.showDialog(ownerFrame, this, message, e); } } else { encryptionUtil = null; } } // Ooops... else { log.debug("Unrecognised ActionEvent command '" + event.getActionCommand() + "' in " + event); } }
From source file:org.fhaes.analysis.FHInterval.java
/** * Actually perform the analysis./*from ww w . j ava 2 s . c o m*/ */ @SuppressWarnings("deprecation") private void doAnalysis() { log.debug("INPUT PARAMETERS"); log.debug("inputFileArray = " + inputFileArray); log.debug("analyissType = " + analysisType); log.debug("startYear = " + startYear); log.debug("endYear = " + endYear); log.debug("fireFilterType = " + fireFilterType); log.debug("filterValue = " + filterValue); log.debug("includeIncomplete = " + includeIncomplete); log.debug("alphaLevel = " + alphaLevel); boolean highway = true; ArrayList<FHX2FileReader> myReader = new ArrayList<FHX2FileReader>(); Integer minFirstYear = new Integer(9999); Integer maxLastYear = new Integer(0); String savePath = new String(); savePath = inputFileArray[0].getAbsolutePath(); for (int i = 0; i < inputFileArray.length; i++) { myReader.add(new FHX2FileReader(inputFileArray[i])); /* * set the beginning year accounting for the filter */ if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { // myReader.get(i).makeClimate2d(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstFireYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstFireYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { // myReader.get(i).makeClimate2dII(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstInjuryYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstInjuryYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { // myReader.get(i).makeClimate2dII(); if (startYear == 0 && highway) { if (myReader.get(i).getFirstIndicatorYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstIndicatorYear(); } } else if (startYear != 0 && highway) { if (myReader.get(i).getFirstYear() < minFirstYear) { minFirstYear = myReader.get(i).getFirstYear(); } } if (startYear != 0) { minFirstYear = startYear; // minFirstYear = minFirstYear+1; } } else { log.error("Unsupported event type caught"); } /* * Set the last year accounting for the filter */ if (myReader.get(i).getLastYear() > maxLastYear) { maxLastYear = myReader.get(i).getLastYear(); } if (endYear != 0) { maxLastYear = endYear; } } // end of i loop log.debug("the input filelength is " + inputFileArray.length); log.debug("The FIRST FIRE YEAR is " + minFirstYear); log.debug("The LAST YEAR is " + maxLastYear); log.debug("Minimum and Maximum years are " + minFirstYear + " " + maxLastYear); /* * set the format for the output of the numbers to 2 decimal formats */ DecimalFormat twoPlace = new DecimalFormat("0.00"); DecimalFormat threePlace = new DecimalFormat("0.000"); /* * Calculate the listYears the common years where the files will be analyzed */ ArrayList<Integer> listYears = new ArrayList<Integer>(); for (int i = 0; i < maxLastYear - minFirstYear + 1; i++) { listYears.add(minFirstYear + i); } /* * create arraylist need for the Interval Analysis */ ArrayList<ArrayList<Integer>> climateMatrixSite = new ArrayList<ArrayList<Integer>>(); ArrayList<ArrayList<Double>> filterMatrix = new ArrayList<ArrayList<Double>>(); ArrayList<Integer> climateVector = new ArrayList<Integer>(); ArrayList<ArrayList<Double>> climateVectorFilter2 = new ArrayList<ArrayList<Double>>(); // ArrayList<Double> fireintervalspersite = new ArrayList<Double>(); ArrayList<Integer> climateVectorActualSite = null; ArrayList<Double> filterVectorActual = null; ArrayList<Integer> climateYear = new ArrayList<Integer>(); ArrayList<Integer> minSampleFilter = null; ArrayList<Double> percentOfRecordingfilter = null; Double[] Dfireintervalspersite; double[] dfireintervalspersite; String[] statsparam = new String[22]; if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean fire interval"; statsparam[2] = "Median fire interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Fire frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire interval"; statsparam[9] = "Maximum fire interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull fire frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean indicator interval"; statsparam[2] = "Median indicator interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Indicator frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire interval"; statsparam[9] = "Maximum indicator interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull indicator frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { statsparam[0] = "Total intervals"; statsparam[1] = "Mean fire and other indicator interval"; statsparam[2] = "Median fire and other indicator interval"; statsparam[3] = "Standard deviation"; statsparam[4] = "Fire and other indicator frequency"; statsparam[5] = "Coefficient of variation"; statsparam[6] = "Skewness"; statsparam[7] = "Kurtosis"; statsparam[8] = "Minimum fire and other indicator interval"; statsparam[9] = "Maximum fire interval"; statsparam[10] = "Weibull scale parameter"; statsparam[11] = "Weibull shape parameter"; statsparam[12] = "Weibull mean"; statsparam[13] = "Weibull median"; statsparam[14] = "Weibull mode"; statsparam[15] = "Weibull standard deviation"; statsparam[16] = "Weibull indicator frequency"; statsparam[17] = "Weibull skewness"; statsparam[18] = "Lower exceedance interval"; statsparam[19] = "Upper exceedance interval"; statsparam[20] = "Significantly short interval upper bound"; statsparam[21] = "Significantly long interval lower bound"; } else { log.error("Unsupported event type caught"); } double[] fixvalt = { 0.999, 0.99, 0.975, 0.95, 0.9, 0.875, 0.8, 0.75, 0.7, 0.667, 0.5, 0.333, 0.3, 0.25, 0.2, 0.125, 0.1, 0.05, 0.025, 0.01, 0.001 }; double[][] ExceeProbcomp = new double[fixvalt.length][myReader.size()]; double[][] ExceeProbsample = new double[fixvalt.length][myReader.size()]; // log.debug("the size of statsparam is " + // statsparam.length); double[][] summaryComp = new double[statsparam.length][myReader.size()]; double[] numberOfintervalscomp = new double[myReader.size()]; // ArrayList<ArrayList<Integer>>(); // ArrayList<ArrayList<Integer>> FIyearperSample = new // ArrayList<ArrayList<Integer>>(); ArrayList<Integer> FyearperSampletemp; ArrayList<Integer> FIyearperSampletemp; // ArrayList<Double> fireintervalspersample = new double[] numberOfintervalssamp = new double[myReader.size()]; double[][] summarySample = new double[statsparam.length][myReader.size()]; Double[] Dfireintervalspersample; double[] dfireintervalspersample; /* * Set up either of the two filters two create the binary matrix on the case of composite analysis there are two possible filters: * Number of fires and percentage of scarred trees. */ Integer firesFilter1 = new Integer(0); Double firesFilter2 = new Double(0); if (fireFilterType.equals(FireFilterType.NUMBER_OF_EVENTS)) { if (filterValue != 1) firesFilter1 = filterValue.intValue(); // log.debug("number of fires is selected is: "+ // firesFilter1); } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_ALL_TREES)) { if (filterValue != 1) firesFilter2 = filterValue / 100.0; // log.debug("percentage of fires is selected is: "+ // firesFilter2); } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { if (filterValue != 1) firesFilter2 = filterValue / 100.0; // TODO ELENA TO CHECK } else { log.error("Unknown FireFilterType"); return; } boolean[] enoughIntComp = new boolean[myReader.size()]; boolean[] enoughIntSamp = new boolean[myReader.size()]; // NEW FOR ELENA log.debug("Sample depth filter type = " + sampleDepthFilterType); log.debug("Sample depth value = " + sampleDepthFilterValue); // if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_SAMPLES)) // { // // TODO ELENA // } // else if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_RECORDER_SAMPLES)) // { // // TODO ELENA // } /* * start processing each file individually: The analysis can be done by either tree (by sample/non-binary) or by site * (composite/binary). by tree the box selected is: jCheckTree. by site the box selected is: */ for (int i = 0; i < myReader.size(); i++) { log.debug(" Starting to Process file : " + myReader.get(i).getName()); /* * get the vector Year containing the vector of year of a given fhx file load it into the array list climateYear. */ climateYear = myReader.get(i).getYearArray(); // new stuff // Create filter based on min number of samples/recorder samples int[] depths = null; if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_SAMPLES)) { depths = myReader.get(i).getSampleDepths(); log.debug("MIN_NUM_SAMPLES "); } else if (sampleDepthFilterType.equals(SampleDepthFilterType.MIN_NUM_RECORDER_SAMPLES)) { depths = myReader.get(i).getRecordingDepths(eventTypeToProcess); log.debug(" MIN_NUM_RECORDER_SAMPLES"); } else { log.error("Unknown sample depth filter type."); return; } minSampleFilter = new ArrayList<Integer>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateYear.indexOf(listYears.get(ij)) == -1) { minSampleFilter.add(-1); } else { // log.debug("the sample depth is " // + myReader.get(i).getSampleDepths()[climateYear.indexOf(listYearsComp.get(ij))]); minSampleFilter.add(new Integer(depths[climateYear.indexOf(listYears.get(ij))])); } // log.debug(" " + minSampleFilter.get(ij)); } // end new stuff /* * get filter matrix for each file. * * filters2d matrix composed of the 3 filters number of fires (total capital letter per row) total number of tree (total lower * case letter plus bars counting only after a fire) percent of scared trees total fires/total trees */ // climateVectorFilter2 = myReader.get(i).getFilterArrays(eventTypeToProcess); /* * More new stuff */ if (filterValue != 1) { /* * get both matrices: * * 2. filters2d matrix composed of the 3 filters number of fires (total capital letter per row) total number of tree (total * lower case letter plus bars counting only after a fire) percent of scared trees total fires/total trees */ climateVectorFilter2 = myReader.get(i).getFilterArrays(eventTypeToProcess); /* * if by tree analysis is selected create two matrices (array list) 1. filterMatrix containing the three filter vectors only * in between common years (so using the listYearComp array list subset of the years vector) 2. climateMatrix 2 dimensional * array list containing binary matrices restricted to the listYear list. */ if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { percentOfRecordingfilter = new ArrayList<Double>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateYear.indexOf(listYears.get(ij)) == -1) { percentOfRecordingfilter.add(-1.0); } else { if (myReader.get(i).getRecordingDepths(eventTypeToProcess)[climateYear .indexOf(listYears.get(ij))] != 0) { percentOfRecordingfilter.add(new Double( climateVectorFilter2.get(0).get(climateYear.indexOf(listYears.get(ij))) / myReader.get(i).getRecordingDepths(eventTypeToProcess)[climateYear .indexOf(listYears.get(ij))])); } else { percentOfRecordingfilter.add(-99.0); } } log.debug("PERCENTAGE_OF_RECORDING is: " + percentOfRecordingfilter.get(ij)); } } else { for (int ik = 0; ik < 3; ik++) { log.debug("filter number is: " + ik); filterVectorActual = new ArrayList<Double>(); for (int ij = 0; ij < listYears.size(); ij++) { // log.debug(" climateYear.indexOf(listYearsComp.get(j))" + // climateYear.indexOf(listYearsComp.get(ij))); // if(ik==0){log.debug("number of fires // "+climateVectorFilter2.get(0).get(climateYear.indexOf(listYears.get(ij)))+" year // "+listYearsComp.get(ij));} if (climateYear.indexOf(listYears.get(ij)) == -1) { filterVectorActual.add(-1.0); } else { filterVectorActual.add(new Double( climateVectorFilter2.get(ik).get(climateYear.indexOf(listYears.get(ij))))); } if (ik == 2) { log.debug("filteperc " + filterVectorActual.get(ij)); } } // log.debug("size of filterVectorActual is : "+filterVectorActual.size()); filterMatrix.add(filterVectorActual); // if(ik==0){log.debug("filters is: "+filter); } } // end of if-else percentageofrecording // log.debug("size of the FilterMatrix is" + filterMatrix.size()); } // end of if filters not equal to 1 /* * end of more new stuff */ /* * * 1. Create the filterMatrix containing the tree filter vectors only in between common years (so using the listYearComp array * list subset of the years vector) */ // for (int ik = 0; ik < 3; ik++) // { // filterVectorActual = new ArrayList<Double>(); // for (int ij = 0; ij < listYears.size(); ij++) // { // if (climateYear.indexOf(listYears.get(ij)) == -1) // { // filterVectorActual.add(-1.0); // } // else // { // filterVectorActual.add(new Double(climateVectorFilter2.get(ik).get(climateYear.indexOf(listYears.get(ij))))); // } // } /* * ArrayList filterMatrix containes the filter matrix for each of the files */ // filterMatrix.add(filterVectorActual); // }//end of creating the filter matrix. /* * get matrix climate binary matrix by site (binary analysis) if Composite is selected. */ // if ((doComposite)&&(!jTextOfFires.getText().equals("1"))){ if (analysisType.equals(AnalysisType.COMPOSITE)) { log.debug("inside the comp"); // System.out.println("inside the comp " + " working on file "+ myReader.get(i).getName() ); if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { climateVector = myReader.get(i).getFireEventsArray(); } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { climateVector = myReader.get(i).getOtherInjuriesArray(); } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { climateVector = myReader.get(i).getFiresAndInjuriesArray(); } else { log.error("Unsupported event type caught"); } climateVectorActualSite = new ArrayList<Integer>(); for (int j = 0; j < listYears.size(); j++) { if (climateYear.indexOf(listYears.get(j)) == -1) { climateVectorActualSite.add(-1); } else { if (minSampleFilter.get(j).intValue() >= sampleDepthFilterValue.intValue()) { if (filterValue != 1) { if (fireFilterType.equals(FireFilterType.NUMBER_OF_EVENTS)) { // log.debug("fire filter: "+firesFilter1+" year is: "+listYears.get(j) // +" fires: "+filterMatrix.get(3*i).get(j)+" climatevector: // "+climateVector.get(climateYear.indexOf(listYears.get(j)))); if ((filterMatrix.get(3 * i).get(j) < firesFilter1) && (climateVector.get(climateYear.indexOf(listYears.get(j)))) != -1.0) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_ALL_TREES)) { // log.debug("percent of fires is selected is: "+ // firesFilter2+" "+climateVector.get(climateYear.indexOf(listYearsComp.get(j)))); // log.debug("the filter percent of fires is"+filterMatrix.get((3*i+2)).get(j)); if ((filterMatrix.get(3 * i + 2).get(j) == -99)) { climateVectorActualSite.add(-1); } else { if ((filterMatrix.get(3 * i + 2).get(j) < firesFilter2) && ((climateVector .get(climateYear.indexOf(listYears.get(j)))) != -1.0)) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } } else if (fireFilterType.equals(FireFilterType.PERCENTAGE_OF_RECORDING)) { // TODO // ELENA TO IMPLEMENT if (percentOfRecordingfilter.get(j) == -99) { climateVectorActualSite.add(-1); } else { if ((percentOfRecordingfilter.get(j) < firesFilter2) && ((climateVector .get(climateYear.indexOf(listYears.get(j)))) != -1.0)) { climateVectorActualSite.add(0); } else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } } } else { log.error("Unknown FireFilterType"); return; } } // end of if filter not equal to 1 else { climateVectorActualSite .add(climateVector.get(climateYear.indexOf(listYears.get(j)))); } // end of else of if filter not equal to 1 } // end of if the filter minsampedepth else { // log.debug("j is " + j + "minSampleFilter is " + minSampleFilter.get(j)); climateVectorActualSite.add(-1); } } // end else 645 to 721 } // end of j loop listyears (420-459) /* * climateMatrixSite has the composite information taking in consideration both the filters and common years */ climateMatrixSite.add(climateVectorActualSite); /* * Must get the years with Fires from the climateMatrixSite which has been filter already */ ArrayList<Double> fireintervalspersite = new ArrayList<Double>(); ArrayList<Integer> yearsWithFires = new ArrayList<Integer>(); for (int ij = 0; ij < listYears.size(); ij++) { if (climateMatrixSite.get(i).get(ij) == 1) { yearsWithFires.add(listYears.get(ij)); log.debug("year with fires " + listYears.get(ij)); } } /* * check that the number of years with fires is bigger of equal than 3 if so make the fire intervals else the test can not * be run and report NA */ // new swich if (yearsWithFires.size() != 0) { if (includeIncomplete) { if (maxLastYear.compareTo(yearsWithFires.get(yearsWithFires.size() - 1)) != 0) { log.debug("here"); numberOfintervalscomp[i] = yearsWithFires.size(); } else { numberOfintervalscomp[i] = yearsWithFires.size() - 1; } } else { numberOfintervalscomp[i] = yearsWithFires.size() - 1; } } log.debug("number of invervlas in comp is: " + numberOfintervalscomp[i]); // end of new switch if (numberOfintervalscomp[i] >= 3) { enoughIntComp[i] = true; ArrayList<Integer> fireIntervals = generateFireIntervals(yearsWithFires); for (int ij = 0; ij < fireIntervals.size(); ij++) { // log.debug("fire intervals are: "+ // test1.getFireIntervals().get(ij)); fireintervalspersite.add(fireIntervals.get(ij) * 1.0); } /* * Add extra interval if include incomplete is selected. the interval goes from the last fire scar year to the last year * of the fire history. */ if (includeIncomplete) { double includeinterval = maxLastYear - yearsWithFires.get(yearsWithFires.size() - 1); if (includeinterval > 0) { fireintervalspersite.add(includeinterval); System.out.println("the last year is " + maxLastYear + "the last year with fire is " + yearsWithFires.get(yearsWithFires.size() - 1)); log.debug("the included interval is " + includeinterval); } } log.debug("FireintervalsPerSite =" + fireintervalspersite); /* * Get the normal statistics for the fire intervals add the values to the stats and then call them for the stats */ DescriptiveStatistics stats = new DescriptiveStatistics(); Dfireintervalspersite = new Double[fireintervalspersite.size()]; Dfireintervalspersite = fireintervalspersite.toArray(Dfireintervalspersite); dfireintervalspersite = new double[fireintervalspersite.size()]; // summaryComp = new // double[statsparam.length][myReader.size()]; for (int ik = 0; ik < fireintervalspersite.size(); ik++) { stats.addValue(Dfireintervalspersite[ik].doubleValue()); dfireintervalspersite[ik] = Dfireintervalspersite[ik].doubleValue(); } /* * load the Summary Analysis for the Composite fire intervals */ summaryComp[0][i] = fireintervalspersite.size(); // double mean = stats.getMean(); summaryComp[1][i] = stats.getMean(); // double median = // StatUtils.percentile(dfireintervalspersite, 50); summaryComp[2][i] = StatUtils.percentile(dfireintervalspersite, 50); // double std = stats.getStandardDeviation(); summaryComp[3][i] = stats.getStandardDeviation(); // double skew = stats.getSkewness(); summaryComp[4][i] = 1.0 / summaryComp[1][i]; summaryComp[5][i] = summaryComp[3][i] / summaryComp[1][i]; summaryComp[6][i] = stats.getSkewness(); // double kurt = stats.getKurtosis(); if (numberOfintervalscomp[i] == 3) { summaryComp[7][i] = -99; } else { summaryComp[7][i] = stats.getKurtosis(); } // log.debug("nomean \t\t nostd \t\t nokurt \t noskew \t\t nomedian"); // log.debug(twoPlace.format(mean)+"\t\t"+twoPlace.format(std)+"\t\t"+twoPlace.format(kurt)+"\t\t"+twoPlace.format(skew)+"\t\t"+twoPlace.format(median)); Weibull weibull = new Weibull(fireintervalspersite); ArrayList<Double> weibullProb = weibull.getWeibullProbability(fireintervalspersite); ArrayList<Double> siglonglowbound = new ArrayList<Double>(); ArrayList<Double> sigshortupbound = new ArrayList<Double>(); log.debug("the weibull probability of first element is " + weibullProb.get(0)); log.debug("the index the size of the interval is " + weibullProb.indexOf(weibullProb.get(0))); for (int ij = 0; ij < weibullProb.size() - 1; ij++) { if (weibullProb.get(ij) <= alphaLevel) { siglonglowbound.add(fireintervalspersite.get(ij)); } if (weibullProb.get(ij) >= (1 - alphaLevel)) { sigshortupbound.add(fireintervalspersite.get(ij)); } } summaryComp[10][i] = weibull.getScale(); summaryComp[11][i] = weibull.getShape(); summaryComp[12][i] = weibull.getMean(); summaryComp[13][i] = weibull.getMedian(); summaryComp[14][i] = weibull.getMode(); summaryComp[15][i] = weibull.getSigma(); summaryComp[16][i] = 1.0 / summaryComp[13][i]; summaryComp[17][i] = weibull.getSkew(); summaryComp[18][i] = weibull.getExceedenceProbability2()[0]; summaryComp[19][i] = weibull.getExceedenceProbability2()[1]; Collections.sort(sigshortupbound); log.debug("siglonglowbound is " + siglonglowbound); try { summaryComp[20][i] = sigshortupbound.get(sigshortupbound.size() - 1); } catch (Exception e) { summaryComp[20][i] = Double.NaN; } Collections.sort(siglonglowbound); try { summaryComp[21][i] = siglonglowbound.get(0); } catch (Exception e) { summaryComp[21][i] = Double.NaN; } log.debug("sigshortupbound is " + sigshortupbound); Collections.sort(fireintervalspersite); summaryComp[8][i] = fireintervalspersite.get(0); summaryComp[9][i] = fireintervalspersite.get(fireintervalspersite.size() - 1); // log.debug("shape \t\t scale \t\t median "); // log.debug(twoPlace.format(test1.Weibull_Parameters(fireintervalspersite)[0])+"\t\t"+twoPlace.format(test1.Weibull_Parameters(fireintervalspersite)[1])+"\t\t"+twoPlace.format(test1.weibull_median(test1.Weibull_Parameters(fireintervalspersite)))); // log.debug("mean \t\t sigma \t\t mode \t\t skewness"); // log.debug(twoPlace.format(test1.weibull_mean(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_sigma(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_mode(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_skew(test1.Weibull_Parameters(fireintervalspersite)))); // log.debug("maxhazard \t\t lei \t\t uei "); // log.debug(twoPlace.format(test1.maxhazard_int(test1.Weibull_Parameters(fireintervalspersite)))+"\t\t"+twoPlace.format(test1.weibull_lowuppexcint(test1.Weibull_Parameters(fireintervalspersite))[0])+"\t\t"+twoPlace.format(test1.weibull_lowuppexcint(test1.Weibull_Parameters(fireintervalspersite))[1])); // log.debug("the size of YearWith Fires is "+YearsWithFires.size()); System.out.println("the size of the prb exdc is " + weibull.getExceedenceProbability().length); for (int kk = 0; kk < weibull.getExceedenceProbability().length; kk++) { ExceeProbcomp[kk][i] = weibull.getExceedenceProbability()[kk]; // log.debug("file "+i+"Exce probability "+ // ExceeProbcomp[kk][i]); } } // end of if enoughIntComp else { enoughIntComp[i] = false; } } // end the if composite is selected /* * starting the process for the sample mode. */ if (analysisType.equals(AnalysisType.SAMPLE)) { log.debug("I am in sample "); ArrayList<Double> fireintervalspersample = new ArrayList<Double>(); FIyearperSampletemp = new ArrayList<Integer>(); // FyearperSampletemp = new ArrayList<Integer>(); for (int k = 0; k < myReader.get(i).getNumberOfSeries(); k++) { log.debug("Parsing file index " + i + ", series number " + (k + 1)); FyearperSampletemp = new ArrayList<Integer>(); // log.debug("the size of the years of the file is:"+ // myReader.get(i).getYear().size()); // log.debug("years with fires in sample "+k + // "years are "); // for (int j = 0; j < myReader.get(i).getYearArray().size(); j++) for (int j = 0; j < listYears.size(); j++) { // log.debug("the size climate2d is "+myReader.get(i).getClimate2d().get(k).get(j)); if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2d().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); FyearperSampletemp.add(listYears.get(j)); } } } // { // if ((myReader.get(i).getClimate2d().get(k).get(j) == 1)) // { // / log.debug("I here inside ==1 "+ // / j+" "+myReader.get(i).getFirstYear()); // / int temp=j+myReader.get(i).getFirstYear(); // / log.debug((j+myReader.get(i).getFirstYear())); // /// FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } // } else if (eventTypeToProcess.equals(EventTypeToProcess.INJURY_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2dII().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { FyearperSampletemp.add(listYears.get(j)); } } // if ((myReader.get(i).getClimate2dII().get(k).get(j) == 1)) // { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } } else if (eventTypeToProcess.equals(EventTypeToProcess.FIRE_AND_INJURY_EVENT)) { if (climateYear.indexOf(listYears.get(j)) != -1) { if (myReader.get(i).getClimate2dIII().get(k) .get(climateYear.indexOf(listYears.get(j))) == 1) { FyearperSampletemp.add(listYears.get(j)); } } // if ((myReader.get(i).getClimate2dIII().get(k).get(j) == 1)) // { // FyearperSampletemp.add((j + myReader.get(i).getFirstYear())); // } } else { log.error("Unsupported event type caught"); } } // / end of the loop for listYears in common (finish loading the fire year per sample log.debug( "series number " + (k + 1) + " FyearperSampletemp.size() " + FyearperSampletemp.size()); if (FyearperSampletemp.size() != 0) { if (includeIncomplete) { if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) { numberOfintervalssamp[i] = numberOfintervalssamp[i] + FyearperSampletemp.size(); } } else { numberOfintervalssamp[i] = numberOfintervalssamp[i] + (FyearperSampletemp.size() - 1); } } log.debug("series number: " + (k + 1) + " number of intervals " + numberOfintervalssamp[i]); // new if ((FyearperSampletemp.size() == 1) && (includeIncomplete)) { log.debug("last index per sample is " + myReader.get(i).getLastYearIndexPerSample()[k]); log.debug("first year per sample is " + myReader.get(i).getFirstYear()); log.debug("maxLastyear is " + maxLastYear); // if (maxLastYear != FyearperSampletemp.get(FyearperSampletemp.size() - 1)) if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) { log.debug("I am in not equal "); log.debug( "last year in the sample is " + (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())); log.debug("maxLastyear is " + maxLastYear); log.debug("the last fire year in the sample " + FyearperSampletemp.get(FyearperSampletemp.size() - 1)); if (maxLastYear <= (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())) { Integer temp = ((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // int temp1 = maxLastYear.intValue() - FyearperSampletemp.get(FyearperSampletemp.size() - 1).intValue(); log.debug("in less than or equal to "); // temp = (maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1); log.debug("the resta temp is " + temp); // FIyearperSampletemp.add(((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1))); if ((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1) > 0) { FIyearperSampletemp.add( (maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); log.debug("the fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // FIyearperSampletemp.add(temp); // log.debug("the fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } else { log.debug("in else "); FIyearperSampletemp.add((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // FIyearperSampletemp.add((myReader.get(i).getFirstYear() + myReader.get(i).getLastYearIndexPerSample()[k]) // - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); } // log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(0)); } // end of if one fire year and includelastyear so we have at least one interval in a given series. // endofnew if ((FyearperSampletemp.size() >= 2)) { log.debug("Series number is " + (k + 1)); for (int jk = 0; jk < FyearperSampletemp.size() - 1; jk++) { // FIyearperSampletemp.add(FyearperSample.get(k).get(jk+1) // - FyearperSample.get(k).get(jk)); log.debug("FyearperSampletemp is " + FyearperSampletemp.get(jk)); if ((FyearperSampletemp.get(jk + 1) - FyearperSampletemp.get(jk)) > 0) { FIyearperSampletemp .add(FyearperSampletemp.get(jk + 1) - FyearperSampletemp.get(jk)); } // FIyearperSampletemp.add(FyearperSampletemp.get(jk+1) // - FyearperSampletemp.get(jk)); log.debug("fire intervals for sample " + k + " is " + FIyearperSampletemp.get(jk)); // fisumtemp= fisumtemp + // FIyearperSampletemp.get(jk).intValue(); } if (includeIncomplete) { // if (maxLastYear != FyearperSampletemp.get(FyearperSampletemp.size() - 1)) if (maxLastYear.compareTo(FyearperSampletemp.get(FyearperSampletemp.size() - 1)) != 0) // if ((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) != FyearperSampletemp // .get(FyearperSampletemp.size() - 1)) { if (maxLastYear <= (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())) { if (((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)) > 0) { FIyearperSampletemp.add(((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1))); } } else { FIyearperSampletemp.add((myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear()) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); } // log.debug("the sample number is "+k+ // " the size of the fyearpersampletemp is "+ // FyearperSampletemp.size() ); // log.debug("the last year per sample is " // + (myReader.get(i).getLastYearIndexPerSample()[k] + myReader.get(i).getFirstYear())); // log.debug(" the last fire year per sample " + FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // FIyearperSampletemp.add((maxLastYear) - FyearperSampletemp.get(FyearperSampletemp.size() - 1)); // log.debug("the last intrval in included is on is " // + FIyearperSampletemp.get(FIyearperSampletemp.size() - 1)); } } } // end of if at least 2 fier years so we have at least one interval in a given series. log.debug("size of FIyearperSampletemp " + FIyearperSampletemp.size() + " at series is :" + (k + 1)); // FIyearperSampletemp.size()+ // " X "+FIyearperSampletemp.get(0).size()); } // end of the loop for number of series. // log.debug("size of FIyearperSample "+ // FIyearperSampletemp.size()); for (int j = 0; j < FIyearperSampletemp.size(); j++) { fireintervalspersample.add(FIyearperSampletemp.get(j) * 1.0); } /* * Get the normal statistics for the fire intervals add the values to the stats and then call them for the stats */ if (fireintervalspersample.size() >= 3) { enoughIntSamp[i] = true; DescriptiveStatistics stasample = new DescriptiveStatistics(); Dfireintervalspersample = new Double[fireintervalspersample.size()]; Dfireintervalspersample = fireintervalspersample.toArray(Dfireintervalspersample); dfireintervalspersample = new double[fireintervalspersample.size()]; // summarySample = new // double[statsparam.length][myReader.size()]; for (int ik = 0; ik < fireintervalspersample.size(); ik++) { stasample.addValue(Dfireintervalspersample[ik].doubleValue()); dfireintervalspersample[ik] = Dfireintervalspersample[ik].doubleValue(); log.debug("the " + ik + " fire interval is " + dfireintervalspersample[ik]); } log.debug("the size for dfireintervalspersample is " + dfireintervalspersample.length); // ADDED BY PETE if (dfireintervalspersample.length == 0) continue; /* * load the Summary Analysis for the Sample fire intervals */ summarySample[0][i] = fireintervalspersample.size(); // double mean = stats.getMean(); summarySample[1][i] = stasample.getMean(); log.debug("mean sample is " + stasample.getMean()); // double median = // StatUtils.percentile(dfireintervalspersite, 50); summarySample[2][i] = StatUtils.percentile(dfireintervalspersample, 50); log.debug("summarySample[2][] " + i + " " + summarySample[2][i]); // double std = stats.getStandardDeviation(); summarySample[3][i] = stasample.getStandardDeviation(); log.debug("summarySample[3][] " + i + " " + summarySample[3][i]); // double skew = stats.getSkewness(); summarySample[4][i] = 1.0 / summarySample[1][i]; log.debug("summarySample[4][] " + i + " " + summarySample[4][i]); summarySample[5][i] = summarySample[3][i] / summarySample[1][i]; log.debug("summarySample[5][] " + i + " " + summarySample[5][i]); summarySample[6][i] = stasample.getSkewness(); log.debug("summarySample[6][] " + i + " " + summarySample[6][i]); // double kurt = stats.getKurtosis(); if (numberOfintervalssamp[i] == 3) { summarySample[7][i] = -99; } else { summarySample[7][i] = stasample.getKurtosis(); } // summarySample[7][i] = stasample.getKurtosis(); log.debug("summarySample[7][] " + i + " " + summarySample[7][i]); // log.debug("nomean \t\t nostd \t\t nokurt \t noskew \t\t nomedian"); // log.debug(twoPlace.format(mean)+"\t\t"+twoPlace.format(std)+"\t\t"+twoPlace.format(kurt)+"\t\t"+twoPlace.format(skew)+"\t\t"+twoPlace.format(median)); Weibull weibull = new Weibull(fireintervalspersample); // ArrayList<Double> weibullProb = weibull.getWeibullProbability(fireintervalspersample); ArrayList<Double> siglonglowbound = new ArrayList<Double>(); ArrayList<Double> sigshortupbound = new ArrayList<Double>(); log.debug("the weibull probability of first element is " + weibullProb.get(0)); log.debug("the index the size of the interval is " + weibullProb.indexOf(weibullProb.get(0))); for (int ij = 0; ij < weibullProb.size() - 1; ij++) { if (weibullProb.get(ij) <= alphaLevel) { siglonglowbound.add(fireintervalspersample.get(ij)); } if (weibullProb.get(ij) >= (1 - alphaLevel)) { sigshortupbound.add(fireintervalspersample.get(ij)); } } // summarySample[10][i] = weibull.getScale(); log.debug("summarySample[10][] " + i + " " + summarySample[10][i]); summarySample[11][i] = weibull.getShape(); log.debug("summarySample[11][] " + i + " " + summarySample[11][i]); summarySample[12][i] = weibull.getMean(); summarySample[13][i] = weibull.getMedian(); summarySample[14][i] = weibull.getMode(); summarySample[15][i] = weibull.getSigma(); summarySample[16][i] = 1.0 / summarySample[13][i]; summarySample[17][i] = weibull.getSkew(); summarySample[18][i] = weibull.getExceedenceProbability2()[0]; summarySample[19][i] = weibull.getExceedenceProbability2()[1]; Collections.sort(sigshortupbound); log.debug("siglonglowbound is " + siglonglowbound); try { summarySample[20][i] = sigshortupbound.get(sigshortupbound.size() - 1); } catch (Exception e) { summarySample[20][i] = Double.NaN; } Collections.sort(siglonglowbound); try { summarySample[21][i] = siglonglowbound.get(0); } catch (Exception e) { summarySample[21][i] = Double.NaN; } log.debug("sigshortupbound is " + sigshortupbound); Collections.sort(fireintervalspersample); try { summarySample[8][i] = fireintervalspersample.get(0); } catch (Exception ex) { log.error("Index out of bounds exception caught: "); log.error(" summarySample[8][i] = fireintervalspersample.get(0)"); ex.printStackTrace(); } summarySample[9][i] = fireintervalspersample.get(fireintervalspersample.size() - 1); // log.debug("shape \t\t scale \t\t median "); // log.debug(twoPlace.format(test2.Weibull_Parameters(fireintervalspersample)[0])+"\t\t"+twoPlace.format(test2.Weibull_Parameters(fireintervalspersample)[1])+"\t\t"+twoPlace.format(test2.weibull_median(test1.Weibull_Parameters(fireintervalspersample)))); // log.debug("mean \t\t sigma \t\t mode \t\t skewness"); // log.debug(twoPlace.format(test1.weibull_mean(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test1.weibull_sigma(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test2.weibull_mode(test1.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test1.weibull_skew(test2.Weibull_Parameters(fireintervalspersample)))); // log.debug("maxhazard \t\t lei \t\t uei "); // log.debug(twoPlace.format(test2.maxhazard_int(test2.Weibull_Parameters(fireintervalspersample)))+"\t\t"+twoPlace.format(test2.weibull_lowuppexcint(test2.Weibull_Parameters(fireintervalspersample))[0])+"\t\t"+twoPlace.format(test2.weibull_lowuppexcint(test2.Weibull_Parameters(fireintervalspersample))[1])); // log.debug("the size of YearWith Fires is "+YearsWithFires.size()); // log.debug("the size of the prb exdc is // "+test2.weibull_Exprob(test2.Weibull_Parameters(fireintervalspersample)).length); System.out.println( "the size of the prb exdc sample is " + weibull.getExceedenceProbability().length); for (int kk = 0; kk < weibull.getExceedenceProbability().length; kk++) { ExceeProbsample[kk][i] = weibull.getExceedenceProbability()[kk]; log.debug("file " + i + " Exce probability " + ExceeProbsample[kk][i]); // log.debug("the size is "+ExceeProbsample.length); } } // end of if at least 4 fireintervals else { enoughIntSamp[i] = false; } } // end of if jRadioSample selected. // log.debug("the size of exceeprobsample is "ExceeProbsample.length+" X "+ExceeProbsample[0].length); } // end of i readering each file loop do loop (354-1185) /* * */ // log.debug("size of the climateMatrixSite is "+climateMatrixSite.size()+" X "+climateMatrixSite.get(0).size()); // for (int j = 0; j < listYears.size(); j++){ // log.debug(climateMatrixSite.get(0).get(j) + " " + // listYears.get(j)); // } // setCursor(Cursor.getDefaultCursor()); /* * create JFileChooser object to generate a browsing capabilities */ JFileChooser fileBrowse = new JFileChooser(); fileBrowse = new JFileChooser(savePath.substring(0, savePath.lastIndexOf(File.separator))); /* * set multiselect on (even though we don't need it) */ fileBrowse.setMultiSelectionEnabled(true); /* * set file and folder directive */ fileBrowse.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); /* * set file type: coma delimited file csv */ // FileFilter filter1 = new CSVFileFilter(); fileBrowse.setFileFilter(filter1); /* * set dialog text: select the name and location of the matrix files */ fileBrowse.setDialogTitle("Select the name and location of the Stats Summary file:"); /* * create the writer object for each of the files to be created */ Writer wr; Writer wrWDE; Writer wrSample; Writer wrWDESample; /* * set delimiter in this case we are using comas "," */ String delim = ","; /* * Start writing information into the files */ try { if (analysisType.equals(AnalysisType.COMPOSITE)) { wr = new BufferedWriter(new FileWriter(summaryFile)); wrWDE = new BufferedWriter(new FileWriter(exceedenceFile)); /* * write the heading to the files */ String buffer = ""; buffer = buffer + "Composite Parameters" + delim; for (int i = 0; i < inputFileArray.length; i++) { buffer = buffer + inputFileArray[i].getLabel() + delim; } ; wr.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; for (int j = 0; j < statsparam.length; j++) { buffer = buffer + statsparam[j] + delim; for (int k = 0; k < inputFileArray.length; k++) { if (j == 0) { if (numberOfintervalscomp[k] < 3) { buffer = buffer + twoPlace.format(numberOfintervalscomp[k]) + delim; } else { buffer = buffer + twoPlace.format(summaryComp[0][k]) + delim; } } else { if (enoughIntComp[k]) { if (summaryComp[j][k] == -99) { buffer = buffer + "" + delim; } else { buffer = buffer + twoPlace.format(summaryComp[j][k]) + delim; } } else { buffer = buffer + "" + delim; } } } // end of k loop filearray wr.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; } // end of j loop Stats // wr.close(); // // // wrWDE = new BufferedWriter(new // FileWriter(outputWDExceeTable)); /* * write the heading to the files */ buffer = ""; wrWDE.write("Exceedence Prob" + delim); for (int i = 0; i < inputFileArray.length; i++) { buffer = buffer + inputFileArray[i].getLabel() + delim; } wrWDE.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; for (int j = 0; j < fixvalt.length; j++) { buffer = buffer + threePlace.format(fixvalt[j]) + delim; for (int k = 0; k < inputFileArray.length; k++) { if (enoughIntComp[k]) { buffer = buffer + twoPlace.format(ExceeProbcomp[j][k]) + delim; } else { buffer = buffer + "" + delim; } } wrWDE.write(buffer.substring(0, buffer.length() - 1) + System.getProperty("line.separator")); buffer = ""; } wr.close(); wrWDE.close(); } // end of if jRadioComp is selecte if (analysisType.equals(AnalysisType.SAMPLE)) { wrSample = new BufferedWriter(new FileWriter(summaryFile)); wrWDESample = new BufferedWriter(new FileWriter(exceedenceFile)); /* * write the heading to the files */ wrSample.write("Sample Parameters" + delim); for (int i = 0; i < inputFileArray.length; i++) { wrSample.write(inputFileArray[i].getLabel() + delim); } wrSample.write(System.getProperty("line.separator")); for (int j = 0; j < statsparam.length; j++) { wrSample.write(statsparam[j] + delim); for (int k = 0; k < inputFileArray.length; k++) { if (j == 0) { if (numberOfintervalssamp[k] < 3) { wrSample.write(twoPlace.format(numberOfintervalssamp[k]) + delim); } else { wrSample.write(twoPlace.format(summarySample[0][k]) + delim); } } else { if (enoughIntSamp[k]) { if (summarySample[j][k] == -99) { wrSample.write("" + delim); } else { wrSample.write(twoPlace.format(summarySample[j][k]) + delim); } } else { wrSample.write("" + delim); } } } // end of k loop file array wrSample.write(System.getProperty("line.separator")); } // end of loop j loop stats // wrSample.close(); // // // log.debug("the size is "+fixvalt.length+" X "+inputFile.length); // wrWDESample = new BufferedWriter(new // FileWriter(outputWDExceeTablesample)); /* * write the heading to the files */ wrWDESample.write("Exceedence Prob" + delim); for (int i = 0; i < inputFileArray.length; i++) { wrWDESample.write(inputFileArray[i].getLabel() + delim); } wrWDESample.write(System.getProperty("line.separator")); for (int j = 0; j < fixvalt.length; j++) { wrWDESample.write(threePlace.format(fixvalt[j]) + delim); for (int k = 0; k < inputFileArray.length; k++) { // System.out.print(ExceeProbcomp[j][k]+delim); if (enoughIntSamp[k]) { wrWDESample.write(twoPlace.format(ExceeProbsample[j][k]) + delim); } else { wrWDESample.write("" + delim); } } // System.out.print(System.getProperty("line.separator")); wrWDESample.write(System.getProperty("line.separator")); } wrSample.close(); wrWDESample.close(); } // end of jradiosample } // end of Try catch (IOException ex) { ex.printStackTrace(); } finally { } }
From source file:org.formic.wizard.form.gui.component.FileChooser.java
/** * Creates a new instance. */ public FileChooser() { this(JFileChooser.FILES_AND_DIRECTORIES, null); }
From source file:org.jas.controller.MetadataController.java
@ActionMethod(Actions.GET_METADATA) public void getMetadata() { fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); int selection = fileChooser.showOpenDialog(null); if (selection == JFileChooser.APPROVE_OPTION) { File root = fileChooser.getSelectedFile(); log.info("\nDIRECTORY to SCAN: " + root); if (root.exists()) { configurator.getControlEngine().fireEvent(Events.DIRECTORY_SELECTED, new ValueEvent<String>(root.getAbsolutePath())); try { metadataList = metadataExtractor.extractMetadata(root); if (metadataList.isEmpty()) { configurator.getControlEngine().fireEvent(Events.DIRECTORY_EMPTY); } else { Collections.sort(metadataList); sendLoadedEvent(metadataList); }//from ww w.j av a2s . c om } catch (IOException e) { handleException(e); } catch (TagException e) { handleException(e); } catch (ReadOnlyFileException e) { handleException(e); } catch (InvalidAudioFrameException e) { handleException(e); } catch (InvalidId3VersionException e) { handleException(e); } catch (InterruptedException e) { handleException(e); } catch (CannotReadException e) { handleException(e); } catch (MetadataException e) { handleException(e); } catch (IllegalArgumentException e) { sendLoadedEvent(metadataList); handleException(e); } } else { configurator.getControlEngine().fireEvent(Events.DIRECTORY_NOT_EXIST, new ValueEvent<String>(root.toString())); } } else { configurator.getControlEngine().fireEvent(Events.DIRECTORY_SELECTED_CANCEL); } }
From source file:org.javaswift.cloudie.CloudiePanel.java
protected void onDownloadStoredObject() { Container container = getSelectedContainer(); List<StoredObject> obj = getSelectedStoredObjects(); JFileChooser chooser = new JFileChooser(); chooser.setCurrentDirectory(lastFolder); if (obj.size() == 1) { chooser.setSelectedFile(new File(obj.get(0).getName())); chooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); } else {/* ww w . ja v a 2s.co m*/ chooser.setFileSelectionMode(JFileChooser.DIRECTORIES_ONLY); } if (chooser.showSaveDialog(this) == JFileChooser.APPROVE_OPTION) { File selected = chooser.getSelectedFile(); for (StoredObject so : obj) { File target = selected; if (target.isDirectory()) { target = new File(selected, so.getName()); } if (target.exists()) { if (confirm("File '" + target.getName() + "' already exists. Overwrite?")) { doSaveStoredObject(target, container, so); } } else { doSaveStoredObject(target, container, so); } } lastFolder = selected.isFile() ? selected.getParentFile() : selected; } }
From source file:org.jets3t.apps.cockpitlite.CockpitLite.java
/** * Event handler for this application, handles all menu items. *//*from ww w. j av a2 s .c om*/ public void actionPerformed(ActionEvent event) { if (event.getSource().equals(loginButton)) { new Thread() { @Override public void run() { listObjects(); } }.start(); } // Object Events else if ("ViewObjectProperties".equals(event.getActionCommand())) { listObjectProperties(); } else if ("RefreshObjects".equals(event.getActionCommand())) { new Thread() { @Override public void run() { listObjects(); } }.start(); } else if ("TogglePublicPrivate".equals(event.getActionCommand())) { new Thread() { @Override public void run() { S3Object object = getSelectedObjects()[0]; String aclStatus = objectTableModel.getObjectAclStatus(object); boolean originalAclWasPublic = ACL_PUBLIC_DESCRIPTION.equals(aclStatus); ToggleAclDialog dialog = new ToggleAclDialog(ownerFrame, originalAclWasPublic, null, cockpitLiteProperties.getProperties()); dialog.setVisible(true); // Update ACL setting. S3Object minimalObject = new S3Object(object.getKey()); AccessControlList newAcl = (dialog.isPublicAclSet() ? AccessControlList.REST_CANNED_PUBLIC_READ : AccessControlList.REST_CANNED_PRIVATE); if (newAcl != null) { if (AccessControlList.REST_CANNED_PRIVATE.equals(newAcl)) { minimalObject.addMetadata(Constants.REST_HEADER_PREFIX + "acl", "private"); } else if (AccessControlList.REST_CANNED_PUBLIC_READ.equals(newAcl)) { minimalObject.addMetadata(Constants.REST_HEADER_PREFIX + "acl", "public-read"); } } updateObjectsAccessControlLists(new S3Object[] { minimalObject }, newAcl); dialog.dispose(); } }.start(); } else if ("GeneratePublicGetURL".equals(event.getActionCommand())) { generatePublicGetUrl(); } else if ("DeleteObjects".equals(event.getActionCommand())) { deleteSelectedObjects(); } else if ("DownloadObjects".equals(event.getActionCommand())) { try { downloadSelectedObjects(); } catch (Exception ex) { String message = "Unable to download objects from S3"; log.error(message, ex); ErrorDialog.showDialog(ownerFrame, this, cockpitLiteProperties.getProperties(), message, ex); } } else if ("UploadFiles".equals(event.getActionCommand())) { JFileChooser fileChooser = new JFileChooser(); fileChooser.setMultiSelectionEnabled(true); fileChooser.setDialogTitle("Choose file(s) to upload"); fileChooser.setFileSelectionMode(JFileChooser.FILES_AND_DIRECTORIES); fileChooser.setApproveButtonText("Upload files"); fileChooser.setCurrentDirectory(fileChoosersLastUploadDirectory); int returnVal = fileChooser.showOpenDialog(ownerFrame); if (returnVal != JFileChooser.APPROVE_OPTION) { return; } final File[] uploadFiles = fileChooser.getSelectedFiles(); if (uploadFiles.length == 0) { return; } // Save the chosen directory location for next time. fileChoosersLastUploadDirectory = uploadFiles[0].getParentFile(); new Thread() { @Override public void run() { prepareForFilesUpload(uploadFiles); } }.start(); } else if (event.getSource().equals(filterObjectsCheckBox)) { if (filterObjectsCheckBox.isSelected()) { filterObjectsPanel.setVisible(true); } else { filterObjectsPanel.setVisible(false); filterObjectsPrefix.setText(""); } } // Ooops... else { log.warn("Unrecognised ActionEvent command '" + event.getActionCommand() + "' in " + event); } }