Example usage for javax.swing JButton setToolTipText

List of usage examples for javax.swing JButton setToolTipText

Introduction

In this page you can find the example usage for javax.swing JButton setToolTipText.

Prototype

@BeanProperty(bound = false, preferred = true, description = "The text to display in a tool tip.")
public void setToolTipText(String text) 

Source Link

Document

Registers the text to display in a tool tip.

Usage

From source file:net.sf.jabref.groups.GroupSelector.java

/**
 * The first element for each group defines which field to use for the quicksearch. The next two define the name and
 * regexp for the group./*from ww w . j a v  a 2s  .  c  o  m*/
 */
public GroupSelector(JabRefFrame frame, SidePaneManager manager) {
    super(manager, IconTheme.JabRefIcon.TOGGLE_GROUPS.getIcon(), Localization.lang("Groups"));
    this.groupsRoot = new GroupTreeNode(new AllEntriesGroup());

    this.frame = frame;
    hideNonHits = new JRadioButtonMenuItem(Localization.lang("Hide non-hits"),
            !Globals.prefs.getBoolean(JabRefPreferences.GRAY_OUT_NON_HITS));
    grayOut = new JRadioButtonMenuItem(Localization.lang("Gray out non-hits"),
            Globals.prefs.getBoolean(JabRefPreferences.GRAY_OUT_NON_HITS));
    ButtonGroup nonHits = new ButtonGroup();
    nonHits.add(hideNonHits);
    nonHits.add(grayOut);
    floatCb.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_FLOAT_SELECTIONS, floatCb.isSelected());
        }
    });
    andCb.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_INTERSECT_SELECTIONS, andCb.isSelected());
        }
    });
    invCb.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_INVERT_SELECTIONS, invCb.isSelected());
        }
    });
    showOverlappingGroups.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_SHOW_OVERLAPPING,
                    showOverlappingGroups.isSelected());
            if (!showOverlappingGroups.isSelected()) {
                groupsTree.setHighlight2Cells(null);
            }
        }
    });

    select.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_SELECT_MATCHES, select.isSelected());
        }
    });
    grayOut.addChangeListener(
            event -> Globals.prefs.putBoolean(JabRefPreferences.GRAY_OUT_NON_HITS, grayOut.isSelected()));

    JRadioButtonMenuItem highlCb = new JRadioButtonMenuItem(Localization.lang("Highlight"), false);
    if (Globals.prefs.getBoolean(JabRefPreferences.GROUP_FLOAT_SELECTIONS)) {

        floatCb.setSelected(true);
        highlCb.setSelected(false);
    } else {
        highlCb.setSelected(true);
        floatCb.setSelected(false);
    }
    JRadioButtonMenuItem orCb = new JRadioButtonMenuItem(Localization.lang("Union"), false);
    if (Globals.prefs.getBoolean(JabRefPreferences.GROUP_INTERSECT_SELECTIONS)) {
        andCb.setSelected(true);
        orCb.setSelected(false);
    } else {
        orCb.setSelected(true);
        andCb.setSelected(false);
    }

    showNumberOfElements.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent e) {
            Globals.prefs.putBoolean(JabRefPreferences.GROUP_SHOW_NUMBER_OF_ELEMENTS,
                    showNumberOfElements.isSelected());
            if (groupsTree != null) {
                groupsTree.invalidate();
                groupsTree.validate();
                groupsTree.repaint();
            }
        }
    });

    autoAssignGroup.addChangeListener(new ChangeListener() {

        @Override
        public void stateChanged(ChangeEvent event) {
            Globals.prefs.putBoolean(JabRefPreferences.AUTO_ASSIGN_GROUP, autoAssignGroup.isSelected());
        }
    });

    invCb.setSelected(Globals.prefs.getBoolean(JabRefPreferences.GROUP_INVERT_SELECTIONS));
    showOverlappingGroups.setSelected(Globals.prefs.getBoolean(JabRefPreferences.GROUP_SHOW_OVERLAPPING));
    select.setSelected(Globals.prefs.getBoolean(JabRefPreferences.GROUP_SELECT_MATCHES));
    editModeIndicator = Globals.prefs.getBoolean(JabRefPreferences.EDIT_GROUP_MEMBERSHIP_MODE);
    editModeCb.setSelected(editModeIndicator);
    showNumberOfElements.setSelected(Globals.prefs.getBoolean(JabRefPreferences.GROUP_SHOW_NUMBER_OF_ELEMENTS));
    autoAssignGroup.setSelected(Globals.prefs.getBoolean(JabRefPreferences.AUTO_ASSIGN_GROUP));

    openset.setMargin(new Insets(0, 0, 0, 0));
    settings.add(andCb);
    settings.add(orCb);
    settings.addSeparator();
    settings.add(invCb);
    settings.addSeparator();
    settings.add(select);
    settings.addSeparator();
    settings.add(editModeCb);
    settings.addSeparator();
    settings.add(grayOut);
    settings.add(hideNonHits);
    settings.addSeparator();
    settings.add(showOverlappingGroups);
    settings.addSeparator();
    settings.add(showNumberOfElements);
    settings.add(autoAssignGroup);
    // settings.add(moreRow);
    // settings.add(lessRow);
    openset.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            if (!settings.isVisible()) {
                JButton src = (JButton) e.getSource();
                showNumberOfElements
                        .setSelected(Globals.prefs.getBoolean(JabRefPreferences.GROUP_SHOW_NUMBER_OF_ELEMENTS));
                autoAssignGroup.setSelected(Globals.prefs.getBoolean(JabRefPreferences.AUTO_ASSIGN_GROUP));
                settings.show(src, 0, openset.getHeight());
            }
        }
    });
    JButton expand = new JButton(IconTheme.JabRefIcon.ADD_ROW.getSmallIcon());
    expand.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            int i = Globals.prefs.getInt(JabRefPreferences.GROUPS_VISIBLE_ROWS) + 1;
            groupsTree.setVisibleRowCount(i);
            groupsTree.revalidate();
            groupsTree.repaint();
            GroupSelector.this.revalidate();
            GroupSelector.this.repaint();
            Globals.prefs.putInt(JabRefPreferences.GROUPS_VISIBLE_ROWS, i);
            LOGGER.info("Height: " + GroupSelector.this.getHeight() + "; Preferred height: "
                    + GroupSelector.this.getPreferredSize().getHeight());
        }
    });
    JButton reduce = new JButton(IconTheme.JabRefIcon.REMOVE_ROW.getSmallIcon());
    reduce.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            int i = Globals.prefs.getInt(JabRefPreferences.GROUPS_VISIBLE_ROWS) - 1;
            if (i < 1) {
                i = 1;
            }
            groupsTree.setVisibleRowCount(i);
            groupsTree.revalidate();
            groupsTree.repaint();
            GroupSelector.this.revalidate();
            // _panel.sidePaneManager.revalidate();
            GroupSelector.this.repaint();
            Globals.prefs.putInt(JabRefPreferences.GROUPS_VISIBLE_ROWS, i);
        }
    });

    editModeCb.addActionListener(new ActionListener() {

        @Override
        public void actionPerformed(ActionEvent e) {
            editModeIndicator = editModeCb.getState();
            updateBorder(editModeIndicator);
            Globals.prefs.putBoolean(JabRefPreferences.EDIT_GROUP_MEMBERSHIP_MODE, editModeIndicator);
        }
    });

    int butSize = newButton.getIcon().getIconHeight() + 5;
    Dimension butDim = new Dimension(butSize, butSize);
    //Dimension butDimSmall = new Dimension(20, 20);

    newButton.setPreferredSize(butDim);
    newButton.setMinimumSize(butDim);
    refresh.setPreferredSize(butDim);
    refresh.setMinimumSize(butDim);
    JButton helpButton = new HelpAction(Localization.lang("Help on groups"), HelpFiles.groupsHelp)
            .getHelpButton();
    helpButton.setPreferredSize(butDim);
    helpButton.setMinimumSize(butDim);
    autoGroup.setPreferredSize(butDim);
    autoGroup.setMinimumSize(butDim);
    openset.setPreferredSize(butDim);
    openset.setMinimumSize(butDim);
    expand.setPreferredSize(butDim);
    expand.setMinimumSize(butDim);
    reduce.setPreferredSize(butDim);
    reduce.setMinimumSize(butDim);
    Insets butIns = new Insets(0, 0, 0, 0);
    helpButton.setMargin(butIns);
    reduce.setMargin(butIns);
    expand.setMargin(butIns);
    openset.setMargin(butIns);
    newButton.addActionListener(this);
    refresh.addActionListener(this);
    andCb.addActionListener(this);
    orCb.addActionListener(this);
    invCb.addActionListener(this);
    showOverlappingGroups.addActionListener(this);
    autoGroup.addActionListener(this);
    floatCb.addActionListener(this);
    highlCb.addActionListener(this);
    select.addActionListener(this);
    hideNonHits.addActionListener(this);
    grayOut.addActionListener(this);
    newButton.setToolTipText(Localization.lang("New group"));
    refresh.setToolTipText(Localization.lang("Refresh view"));
    andCb.setToolTipText(Localization.lang("Display only entries belonging to all selected groups."));
    orCb.setToolTipText(
            Localization.lang("Display all entries belonging to one or more of the selected groups."));
    autoGroup.setToolTipText(Localization.lang("Automatically create groups for database."));
    invCb.setToolTipText(Localization.lang("Show entries *not* in group selection"));
    showOverlappingGroups.setToolTipText(Localization
            .lang("Highlight groups that contain entries contained in any currently selected group"));
    floatCb.setToolTipText(Localization.lang("Move entries in group selection to the top"));
    highlCb.setToolTipText(Localization.lang("Gray out entries not in group selection"));
    select.setToolTipText(Localization.lang("Select entries in group selection"));
    expand.setToolTipText(Localization.lang("Show one more row"));
    reduce.setToolTipText(Localization.lang("Show one less rows"));
    editModeCb.setToolTipText(Localization.lang("Click group to toggle membership of selected entries"));
    ButtonGroup bgr = new ButtonGroup();
    bgr.add(andCb);
    bgr.add(orCb);
    ButtonGroup visMode = new ButtonGroup();
    visMode.add(floatCb);
    visMode.add(highlCb);

    JPanel main = new JPanel();
    GridBagLayout gbl = new GridBagLayout();
    main.setLayout(gbl);

    GridBagConstraints con = new GridBagConstraints();
    con.fill = GridBagConstraints.BOTH;
    //con.insets = new Insets(0, 0, 2, 0);
    con.weightx = 1;
    con.gridwidth = 1;
    con.gridx = 0;
    con.gridy = 0;
    //con.insets = new Insets(1, 1, 1, 1);
    gbl.setConstraints(newButton, con);
    main.add(newButton);
    con.gridx = 1;
    gbl.setConstraints(refresh, con);
    main.add(refresh);
    con.gridx = 2;
    gbl.setConstraints(autoGroup, con);
    main.add(autoGroup);
    con.gridx = 3;
    con.gridwidth = GridBagConstraints.REMAINDER;

    gbl.setConstraints(helpButton, con);
    main.add(helpButton);

    // header.setBorder(BorderFactory.createMatteBorder(1,1,1,1,Color.red));
    // helpButton.setBorder(BorderFactory.createMatteBorder(1,1,1,1,Color.red));
    groupsTree = new GroupsTree(this);
    groupsTree.addTreeSelectionListener(this);
    groupsTree.setModel(groupsTreeModel = new DefaultTreeModel(groupsRoot));
    JScrollPane sp = new JScrollPane(groupsTree, JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED,
            JScrollPane.HORIZONTAL_SCROLLBAR_AS_NEEDED);
    revalidateGroups();
    con.gridwidth = GridBagConstraints.REMAINDER;
    con.weighty = 1;
    con.gridx = 0;
    con.gridwidth = 4;
    con.gridy = 1;
    gbl.setConstraints(sp, con);
    main.add(sp);

    JPanel pan = new JPanel();
    GridBagLayout gb = new GridBagLayout();
    con.weighty = 0;
    gbl.setConstraints(pan, con);
    pan.setLayout(gb);
    con.insets = new Insets(0, 0, 0, 0);
    con.gridx = 0;
    con.gridy = 0;
    con.weightx = 1;
    con.gridwidth = 4;
    con.fill = GridBagConstraints.HORIZONTAL;
    gb.setConstraints(openset, con);
    pan.add(openset);

    con.gridwidth = 1;
    con.gridx = 4;
    con.gridy = 0;
    gb.setConstraints(expand, con);
    pan.add(expand);

    con.gridx = 5;
    gb.setConstraints(reduce, con);
    pan.add(reduce);

    con.gridwidth = 6;
    con.gridy = 1;
    con.gridx = 0;
    con.fill = GridBagConstraints.HORIZONTAL;

    con.gridy = 2;
    con.gridx = 0;
    con.gridwidth = 4;
    gbl.setConstraints(pan, con);
    main.add(pan);
    main.setBorder(BorderFactory.createEmptyBorder(1, 1, 1, 1));
    add(main, BorderLayout.CENTER);
    updateBorder(editModeIndicator);
    definePopup();
    NodeAction moveNodeUpAction = new MoveNodeUpAction();
    moveNodeUpAction.putValue(Action.ACCELERATOR_KEY,
            KeyStroke.getKeyStroke(KeyEvent.VK_UP, KeyEvent.CTRL_MASK));
    NodeAction moveNodeDownAction = new MoveNodeDownAction();
    moveNodeDownAction.putValue(Action.ACCELERATOR_KEY,
            KeyStroke.getKeyStroke(KeyEvent.VK_DOWN, KeyEvent.CTRL_MASK));
    NodeAction moveNodeLeftAction = new MoveNodeLeftAction();
    moveNodeLeftAction.putValue(Action.ACCELERATOR_KEY,
            KeyStroke.getKeyStroke(KeyEvent.VK_LEFT, KeyEvent.CTRL_MASK));
    NodeAction moveNodeRightAction = new MoveNodeRightAction();
    moveNodeRightAction.putValue(Action.ACCELERATOR_KEY,
            KeyStroke.getKeyStroke(KeyEvent.VK_RIGHT, KeyEvent.CTRL_MASK));
}

From source file:edu.ku.brc.specify.tasks.subpane.wb.WorkbenchPaneSS.java

/**
 * Shows / Hides the Image Window. //from   ww  w  . j  a  v a 2  s  .c  o  m
 */
public void setImageFrameVisible(final boolean visible, final JFrame imgFrame, final JButton toolBtn,
        final String ttHelpVisible, final String ttHelpHidden, final String helpContext) {
    if (visible == imgFrame.isVisible()) {
        return;
    }

    if (spreadSheet.getCellEditor() != null) {
        spreadSheet.getCellEditor().stopCellEditing();
    }

    // and add or remove the ListSelectionListener (to avoid loading images when not visible)
    if (!visible) {
        spreadSheet.setTransferHandler(null);

        // hide the image window

        // turn off alwaysOnTop for Swing repaint reasons (prevents a lock up)
        if (imgFrame.isAlwaysOnTop()) {
            imgFrame.setAlwaysOnTop(false);
        }
        // if the image frame is minimized or iconified, set it to fully visible before doing anything else
        if (imgFrame.getState() == Frame.ICONIFIED) {
            imgFrame.setState(Frame.NORMAL);
        }
        toolBtn.setToolTipText(getResourceString(ttHelpVisible));

        spreadSheet.getSelectionModel().removeListSelectionListener(workbenchRowChangeListener);

        // set the image window and the image column invisible
        imgFrame.setVisible(false);
        imageColExt.setVisible(false);
    } else {
        spreadSheet.setTransferHandler(new WBImageTransferable());

        // show the image window

        UIHelper.positionFrameRelativeToTopFrame(imgFrame);

        // when a user hits the "show image" button, for some reason the selection gets nullified
        // so we'll grab it here, then set it at the end of this method

        toolBtn.setToolTipText(getResourceString(ttHelpHidden));

        spreadSheet.getSelectionModel().addListSelectionListener(workbenchRowChangeListener);
        HelpMgr.setHelpID(this, helpContext);

        // set the image window and the image column visible
        imgFrame.setVisible(true);
        imageColExt.setVisible(true);

        // if the image frame is minimized or iconified, set it to fully visible before doing anything else
        if (imgFrame.getState() == Frame.ICONIFIED) {
            imgFrame.setState(Frame.NORMAL);
        }

        showCardImageForSelectedRow();

        // Without this code below the Image Column doesn't get selected
        // when toggling 
        if (currentPanelType == PanelType.Spreadsheet && currentRow != -1) {
            spreadSheet.setRowSelectionInterval(currentRow, currentRow);
            spreadSheet.setColumnSelectionInterval(0, spreadSheet.getColumnCount() - 1);
            spreadSheet.scrollToRow(Math.min(currentRow + 4, model.getRowCount()));
        }

        TableColumn column = spreadSheet.getTableHeader().getColumnModel()
                .getColumn(spreadSheet.getTableHeader().getColumnModel().getColumnCount() - 1);
        column.setCellRenderer(new WbCellRenderer());
        spreadSheet.repaint();
    }
}

From source file:app.RunApp.java

/**
 * Creates button for exporting dependences chart
 * /*www  .  j a  v  a 2s.  co m*/
 * @param jpanel Panel of dependences
 * @param jButtonExport Export button
 * @param posx Position x
 * @param posy Position Y
 */
private void createButtonExportDependencesChart(final JPanel jpanel, JButton jButtonExport, int posx,
        int posy) {
    //button export table
    jButtonExport = new JButton("Save");
    jButtonExport.setBounds(posx, posy, 80, 25);
    jButtonExport.setToolTipText("Save graph as image");

    jButtonExport.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            if (jpanel.getName().equals("jpanel25"))
                try {
                    saveCoocurrenceGraph();
                } catch (AWTException | IOException ex) {
                    Logger.getLogger(RunApp.class.getName()).log(Level.SEVERE, null, ex);
                }
            else
                try {
                    saveHeatmapGraph();
                } catch (AWTException | IOException ex) {
                    Logger.getLogger(RunApp.class.getName()).log(Level.SEVERE, null, ex);
                }
        }
    });
    jpanel.add(jButtonExport);
}

From source file:app.RunApp.java

/**
 * Creates button for exporting table of dependences
 * /*from  w  w  w . j av  a2 s .c om*/
 * @param jtable Table of dependences
 * @param columns Columns
 * @param jpanel Panel
 * @param jButtonExport Export button
 * @param posx Position x
 * @param posy Position y
 * @param table Table type
 */
private void createButtonExportDependencesTable(final JTable jtable, final JTable columns, JPanel jpanel,
        JButton jButtonExport, int posx, int posy, final String table) {
    jButtonExport = new JButton("Save");
    jButtonExport.setBounds(posx, posy, 80, 25);

    switch (table) {
    case "ChiPhi":
        jButtonExport.setToolTipText("Save table with Chi and Phi coefficients");
        break;
    case "Coocurrence":
        jButtonExport.setToolTipText("Save table with co-ocurrence values");
        break;
    case "Heatmap":
        jButtonExport.setToolTipText("Save table with heatmap values");
        break;
    default:
        break;
    }

    jButtonExport.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonExportActionPerformed(evt, jtable, columns, table);
        }
    });
    jpanel.add(jButtonExport);
}

From source file:app.RunApp.java

/**
 * Creates multiple datasets table of metrics and its buttons
 * /*from   ww w.  j  av  a2 s  .c  om*/
 * @param jtable Table with metrics
 * @param jpanel Panel
 * @param buttonAll "All" button
 * @param buttonNone "None" button
 * @param buttonInvert "Invert" button
 * @param buttonCalculate "Calculate" button
 * @param buttonSave "Save" button
 * @param posx Position X
 * @param posy Position Y
 * @param width Width
 * @param height Height
 */
private void createMultiMetricsTable(final JTable jtable, JPanel jpanel, JButton buttonAll, JButton buttonNone,
        JButton buttonInvert, JButton buttonCalculate, JButton buttonSave, int posx, int posy, int width,
        int height) {

    createJTableMetricsMultipleDatasets(jtable, jpanel, MetricUtils.getRowDataMulti(), posx, posy, width,
            height);

    //button All
    buttonAll = new JButton("All");
    buttonAll.setBounds(posx, posy + height + 5, 80, 20);
    buttonAll.setToolTipText("Select all metrics");

    buttonAll.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonAllActionPerformedMulti(evt, jtable);
        }
    });
    jpanel.add(buttonAll);

    //button None
    buttonNone = new JButton("None");
    buttonNone.setToolTipText("Deselect all metrics");
    buttonNone.setBounds(posx + 90, posy + height + 5, 80, 20);

    buttonNone.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonNoneActionPerformedMulti(evt, jtable);
        }
    });
    jpanel.add(buttonNone);

    //button Invert
    buttonInvert = new JButton("Invert");
    buttonInvert.setToolTipText("Invert selection");
    buttonInvert.setBounds(posx + 180, posy + height + 5, 80, 20);

    buttonInvert.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonInvertActionPerformedMulti(evt, jtable);
        }
    });
    jpanel.add(buttonInvert);

    //button Calculate
    buttonCalculate = new JButton("Calculate");
    buttonCalculate.setBounds(posx + 320, posy + height + 5, 95, 20);
    buttonCalculate.setToolTipText("Calculate selected metrics");

    buttonCalculate.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(final java.awt.event.ActionEvent evt) {
            progressFrame.setVisible(true);
            progressFrame.repaint();
            progressBar.setIndeterminate(false);

            new Thread(new Runnable() {
                @Override
                public void run() {
                    // do the long-running work here
                    buttonCalculateActionPerformedMulti(evt, jtable);
                    // at the end:
                    SwingUtilities.invokeLater(new Runnable() {
                        @Override
                        public void run() {
                            progressBar.setIndeterminate(false);
                            progressFrame.setVisible(false);
                            progressFrame.repaint();
                            JOptionPane.showMessageDialog(null, "Metrics have been calculated succesfully.",
                                    "Successful", JOptionPane.INFORMATION_MESSAGE);
                        }//run
                    }); //invokeLater
                }
            }).start(); //Thread
        }
    });
    jpanel.add(buttonCalculate);

    //button Save
    buttonSave = new JButton("Save");
    buttonSave.setBounds(posx + 425, posy + height + 5, 80, 20);
    buttonSave.setToolTipText("Save selected metrics in a file");

    buttonSave.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            try {
                buttonSaveActionPerformedMulti(evt, jtable);
            } catch (IOException ex) {
                Logger.getLogger(RunApp.class.getName()).log(Level.SEVERE, null, ex);
            }
        }
    });
    jpanel.add(buttonSave);
}

From source file:app.RunApp.java

/**
 * Creates table of metrics and its buttons
 * /*from   w  w w  .j a  va2 s  . c o  m*/
 * @param jtable Table with metrics
 * @param jpanel Panel
 * @param buttonAll "All" button
 * @param buttonNone "None" button
 * @param buttonInvert "Invert" button
 * @param buttonCalculate "Calculate" button
 * @param buttonSave "Save" button
 * @param buttonClear "Clear" button
 * @param posx Position x
 * @param posy Position Y
 * @param width Width
 * @param height Height
 */
private void createMetricsTable(final JTable jtable, JPanel jpanel, JButton buttonAll, JButton buttonNone,
        JButton buttonInvert, JButton buttonCalculate, JButton buttonSave, JButton buttonClear, int posx,
        int posy, int width, int height) {
    createJTableMetricsPrincipal(jtable, jpanel, MetricUtils.getRowData(), posx, posy, width, height);

    //button All
    buttonAll = new JButton("All");
    buttonAll.setBounds(posx, posy + height + 5, 80, 20);
    buttonAll.setToolTipText("Select all metrics");
    buttonAll.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonAllActionPerformedPrincipal(evt, jtable);
        }
    });
    jpanel.add(buttonAll);

    //button None
    buttonNone = new JButton("None");
    buttonNone.setToolTipText("Deselect all metrics");
    buttonNone.setBounds(posx + 90, posy + height + 5, 80, 20);

    buttonNone.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonNoneActionPerformedPrincipal(evt, jtable);
        }
    });
    jpanel.add(buttonNone);

    //button Invert
    buttonInvert = new JButton("Invert");
    buttonInvert.setToolTipText("Invert selection");
    buttonInvert.setBounds(posx + 180, posy + height + 5, 80, 20);

    buttonInvert.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonInvertActionButtonPerformed(evt, jtable);
        }
    });
    jpanel.add(buttonInvert);

    //button Clear
    buttonClear = new JButton("Clear");
    buttonClear.setToolTipText("Clear selection and metric values");
    buttonClear.setBounds(posx + 270, posy + height + 5, 80, 20);

    buttonClear.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            buttonClearActionPerformedPrincipal(evt, jtable);
        }
    });
    jpanel.add(buttonClear);

    //button Calculate
    buttonCalculate = new JButton("Calculate");
    buttonCalculate.setBounds(posx + 590, posy + height + 5, 95, 25);
    buttonCalculate.setToolTipText("Calculate selected metrics");

    buttonCalculate.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(final java.awt.event.ActionEvent evt) {
            progressBar.setIndeterminate(false);
            progressFrame.setVisible(true);

            progressFrame.repaint();

            new Thread(new Runnable() {
                @Override
                public void run() {
                    // do the long-running work here
                    buttonCalculateActionPerformedPrincipal(evt, jtable);
                    // at the end:
                    SwingUtilities.invokeLater(new Runnable() {
                        @Override
                        public void run() {
                            progressBar.setIndeterminate(false);
                            progressFrame.setVisible(false);
                            progressFrame.repaint();
                        }//run
                    }); //invokeLater
                }
            }).start(); //Thread
        } //actionPerformed
    });//ActionListener
    jpanel.add(buttonCalculate);

    //button Save
    buttonSave = new JButton("Save");
    buttonSave.setBounds(posx + 695, posy + height + 5, 80, 25);
    buttonSave.setToolTipText("Save selected metrics in a file");

    buttonSave.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(java.awt.event.ActionEvent evt) {
            try {
                buttonSaveActionPerformedPrincipal(evt, jtable);
            } catch (IOException ex) {
                Logger.getLogger(RunApp.class.getName()).log(Level.SEVERE, null, ex);
            }
        }
    });
    jpanel.add(buttonSave);
}

From source file:display.ANNFileFilter.java

License:asdf

Yanng() {
    JPanel toolBars;//from  www .j  av a2s . com
    JMenuBar menuBar;
    JToolBar utilBar, fileBar;
    JButton toJava, runner, trainer, modify, getTraininger, inputer, newwer, saver, saveAser, loader, helper;
    JMenu file;
    final JMenu util;
    JMenu help;

    ImageIcon IJava, IRun, ITrain, IModify, INew, ISave, ILoad, IGetTrainingSet, IGetInput, ISaveAs;

    //initialize main window
    mainWindow = new JFrame("YANNG - Yet Another Neural Network (simulator) Generator");
    mainWindow.setDefaultCloseOperation(JFrame.EXIT_ON_CLOSE);
    mainWindow.setLayout(new BorderLayout());
    mainWindow.setSize(675, 525);
    mainWindow.setIconImage(new ImageIcon(ClassLoader.getSystemResource("display/icons/logo.png")).getImage());
    loadingImage = new ImageIcon(ClassLoader.getSystemResource("display/icons/loading.gif"));

    path = new Vector<String>();
    net = new Vector<NeuralNetwork>();
    oneNet = new Vector<JPanel>();
    tabPanel = new Vector<JPanel>();
    readOut = new Vector<JTextArea>();
    readOutLocale = new Vector<JScrollPane>();
    loadingBar = new Vector<JLabel>();
    title = new Vector<JLabel>();
    close = new Vector<JButton>();
    netName = new Vector<StringBuffer>();
    netKind = new Vector<StringBuffer>();

    resultsPane = new JTabbedPane();

    mainWindow.add(resultsPane);

    toolBars = new JPanel();
    toolBars.setLayout(new FlowLayout(FlowLayout.LEFT));

    //create utilities toolbar with 3 buttons
    utilBar = new JToolBar("Utilities");
    IRun = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/running.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ITrain = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/training.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IModify = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/modifyNet.png"))
            .getImage().getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetTrainingSet = new ImageIcon(
            new ImageIcon(ClassLoader.getSystemResource("display/icons/trainingSet.png")).getImage()
                    .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IGetInput = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/input.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    //set the icons/tooltips for the utilitiy bar    
    runner = new JButton(IRun);
    runner.setToolTipText(
            "<html>Run  the  Current  Neural   Network<br>Once Through with the Current Input</html>");

    trainer = new JButton(ITrain);
    trainer.setToolTipText(
            "<html>Train the Network with the Current<br>Configuration  and  Training  Set</html>");

    modify = new JButton(IModify);
    modify.setToolTipText("<html>Modify the Network<br>for Fun and Profit</html>");

    getTraininger = new JButton(IGetTrainingSet);
    getTraininger.setToolTipText("Get Training Set from File");

    inputer = new JButton(IGetInput);
    inputer.setToolTipText("Get Input Set from File");

    utilBar.add(inputer);
    utilBar.add(runner);
    utilBar.add(getTraininger);
    utilBar.add(trainer);
    utilBar.add(modify);

    //create file toolbar
    fileBar = new JToolBar("file");
    ISaveAs = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/saveAs.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    INew = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/new.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ISave = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/save.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    ILoad = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/load.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));
    IJava = new ImageIcon(new ImageIcon(ClassLoader.getSystemResource("display/icons/toJava.png")).getImage()
            .getScaledInstance(20, 20, java.awt.Image.SCALE_SMOOTH));

    newwer = new JButton(INew);
    newwer.setToolTipText("Create New Neural Network");

    saver = new JButton(ISave);
    saver.setToolTipText("Save Current Network Configuration");

    saveAser = new JButton(ISaveAs);
    saveAser.setToolTipText("Save Network As");

    loader = new JButton(ILoad);
    loader.setToolTipText("Load Network Configuration from File");

    toJava = new JButton(IJava);
    toJava.setToolTipText("Export Network to Java Project");

    fileBar.add(newwer);
    fileBar.add(loader);
    fileBar.add(saver);
    fileBar.add(saveAser);
    fileBar.add(toJava);
    toolBars.add(fileBar);
    toolBars.add(utilBar);
    mainWindow.add(toolBars, BorderLayout.NORTH);

    //create a menubar with three menus on it
    menuBar = new JMenuBar();
    file = new JMenu("File");
    util = new JMenu("Utilities");
    help = new JMenu("Help");

    //add menu items for file menu
    load = new JMenuItem("Load Network Configuration");
    newNet = new JMenuItem("New Network");
    saveAs = new JMenuItem("Save Network As");
    save = new JMenuItem("Save Current Configuration");
    exportNet = new JMenuItem("Export Network to Java Project");
    exportOutput = new JMenuItem("Export Output to Text File");
    file.add(load);
    file.add(newNet);
    file.addSeparator();
    file.add(saveAs);
    file.add(save);
    file.addSeparator();
    file.add(exportNet);
    file.add(exportOutput);
    menuBar.add(file);

    //add menu items for utilities menu
    changeConfig = new JMenuItem("Modify Network Settings");
    getInput = new JMenuItem("Get Input From File");
    getTraining = new JMenuItem("Get Training Set From File");
    run = new JMenuItem("Run");
    train = new JMenuItem("Train");
    getColorMap = new JMenuItem("View Color Map");
    getColorMap.setVisible(false);
    util.add(changeConfig);
    util.addSeparator();
    util.add(getInput);
    util.add(getTraining);
    util.addSeparator();
    util.add(run);
    util.add(train);
    menuBar.add(util);

    //add menu items for help menu
    quickStart = new JMenuItem("Quick Start Guide");
    searchHelp = new JMenuItem("Programming with Yanng");
    about = new JMenuItem("License");
    links = new JMenuItem("<html>Links to Resources<br>about Neural Networks</html>");
    help.add(quickStart);
    help.addSeparator();
    help.add(searchHelp);
    help.addSeparator();
    help.add(about);
    help.addSeparator();
    help.add(links);
    menuBar.add(help);

    mainWindow.setJMenuBar(menuBar);

    //opens the quickstart guide
    quickStart.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/quick-start.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/quick-start.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/quick-start.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    links.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(
                        URLDecoder.decode(ClassLoader.getSystemResource("ann/links.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/links.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/links.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //Displays license information
    about.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            JTextArea x = new JTextArea("Copyright [2015] [Sam Findler and Michael Scott]\n" + "\n"
                    + "Licensed under the Apache License, Version 2.0 (the \"License\");\n"
                    + "you may not use this file except in compliance with the License.\n"
                    + "You may obtain a copy of the License at\n" + "\n"
                    + "http://www.apache.org/licenses/LICENSE-2.0\n" + "\n"
                    + "Unless required by applicable law or agreed to in writing, software\n"
                    + "distributed under the License is distributed on an \"AS IS\" BASIS,\n"
                    + "WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n"
                    + "See the License for the specific language governing permissions and\n"
                    + "limitations under the License.");
            JDialog aboutDialog = new JDialog(mainWindow, "License", true);
            aboutDialog.setSize(500, 250);
            aboutDialog.setLayout(new FlowLayout());
            aboutDialog.add(x);
            x.setEditable(false);
            aboutDialog.setVisible(true);
        }
    });

    //opens the more technical user guide
    searchHelp.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            try {
                File myFile = new File(URLDecoder
                        .decode(ClassLoader.getSystemResource("ann/technical-manual.pdf").getFile(), "UTF-8"));
                Desktop.getDesktop().open(myFile);
            } catch (IOException ex) {
                try {
                    Runtime.getRuntime().exec("xdg-open ./yanng/src/ann/technical-manual.pdf");
                } catch (Exception e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "Your desktop is not supported by java,\ngo to yanng/src/ann/technical-manual.pdf to view the technical manual.",
                            "Desktop not Supported", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });
    //class trains the neural network in the background while the loading bar displays, then prints out the output/connections listings/average error to the readOut pane
    class Trainer extends SwingWorker<NeuralNetwork, Object> {
        protected NeuralNetwork doInBackground() {
            net.get(resultsPane.getSelectedIndex()).trainNet();
            setProgress(1);
            return net.get(resultsPane.getSelectedIndex());
        }

        public void done() {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                    JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                            "Formatting Error", JOptionPane.ERROR_MESSAGE);
                else {
                    printConnections();
                    readOut.get(resultsPane.getSelectedIndex()).append(
                            "Results of Training " + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                    printOutput();
                    readOut.get(resultsPane.getSelectedIndex()).append("Average Error = "
                            + net.get(resultsPane.getSelectedIndex()).getAverageError() + "\n\n");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                printInitMap();
                loadingBar.get(resultsPane.getSelectedIndex()).setVisible(false);
                JOptionPane.showMessageDialog(mainWindow,
                        "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
            }
        }

    }
    //starts the training class when train is pressed in the utilities menu
    train.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            if (resultsPane.getTabCount() != 0) {
                if (net.get(resultsPane.getSelectedIndex()).getTrainingSet() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            }

            else
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });
    //associates the toolbar button with the jump rope guy with the training button on the utilities menu
    trainer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : train.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //runs through one set of inputs and prints the results to the readOut pane  
    run.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputSet() != null) {
                    net.get(resultsPane.getSelectedIndex()).runNet();
                    if (Double.isNaN(net.get(resultsPane.getSelectedIndex()).getAverageError()))
                        JOptionPane.showMessageDialog(mainWindow, "Training Set Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    else {
                        readOut.get(resultsPane.getSelectedIndex()).append("Results of Running through Network "
                                + netName.get(resultsPane.getSelectedIndex()) + ":\n\n");
                        printOutput();
                        System.out.println("Results:");
                        for (int i = 0; i < net.get(resultsPane.getSelectedIndex())
                                .getOutputSet().length; i++) {
                            System.out.println("\n   Output of Input Vector " + i + ":");
                            for (int j = 0; j < net.get(resultsPane.getSelectedIndex())
                                    .getOutputSet()[i].length; j++) {
                                System.out.println("      Output Node " + j + " = "
                                        + net.get(resultsPane.getSelectedIndex()).getOutputSet()[i][j]);
                            }
                        }
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>If the Input is not displaying as expected, chances are the input was inproperly formatted.<br>See help for more details<html>");
                    }
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                if (net.get(resultsPane.getSelectedIndex()).getInputValues() != null) {
                    loadingBar.get(resultsPane.getSelectedIndex()).setText(
                            "<html><font color = rgb(160,0,0)>Training</font> <font color = rgb(0,0,248)>net...</font></html>");
                    loadingBar.get(resultsPane.getSelectedIndex()).setVisible(true);
                    (thisTrainer = new Trainer()).execute();
                } else
                    JOptionPane.showMessageDialog(mainWindow, "No Input Set Specified", "Empty Signifier Error",
                            JOptionPane.ERROR_MESSAGE);
            } else
                JOptionPane.showMessageDialog(mainWindow, "Can't Run Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
        }
    });

    runner.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : run.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //the following code is for the getTraining button under utilities
    getTrainingSet = new JFileChooser();
    getTrainingSet.setFileFilter(new TrainingFileFilter());

    getTraining.addActionListener(new ActionListener() {
        //this method/class gets a training set (tsv/csv file) and parse it through the neural network.  Kind of test that the file is formatted correctly, but if the data is wrong, there isn't much it can do.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile()))
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                        else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseTrainingSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Untrained Map:\n");
                            printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else {
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                else {
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Train Nonexistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    getTraininger.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getTraining.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //this ends the getTraining section of the code   

    getInput.addActionListener(new ActionListener() {
        //this method/class gets an input set (tsv/csv file) and parses it through the neural network.  Somewhat tests that the file is formatted correctly, but cannot give a garuntee.
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = getTrainingSet.showOpenDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if (getTrainingSet.getSelectedFile().getName().endsWith(".csv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".tsv")
                            || getTrainingSet.getSelectedFile().getName().endsWith(".txt"))
                        if (net.get(resultsPane.getSelectedIndex())
                                .parseInputSet(getTrainingSet.getSelectedFile())) {
                            JOptionPane.showMessageDialog(mainWindow,
                                    "<html>Method gives no Garuntee that this File is Formatted Correctly<br>(see help for more details)</html>",
                                    "Formatting Warning", JOptionPane.WARNING_MESSAGE);
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map"))
                                printInitMap();
                        } else
                            JOptionPane.showMessageDialog(mainWindow,
                                    "File Mismatch with Network Configuration", "Correspondence Error",
                                    JOptionPane.ERROR_MESSAGE);
                    else
                        JOptionPane.showMessageDialog(mainWindow, "Wrong File Type", "Category Error",
                                JOptionPane.ERROR_MESSAGE);
                else
                    JOptionPane.showMessageDialog(mainWindow, "No File Selected", "Absence Warning",
                            JOptionPane.WARNING_MESSAGE);
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't train nonexistent network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //opens and displays a color map of a SOM
    getColorMap.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                    MapNode[][] map;

                    map = net.get(resultsPane.getSelectedIndex()).getMapArray();

                    int lValue = net.get(resultsPane.getSelectedIndex()).getLatticeValue();

                    int inputDimensions = net.get(resultsPane.getSelectedIndex()).getInputDimensions();

                    int[][] colorValues = new int[(lValue * lValue)][3];

                    double dMax = net.get(resultsPane.getSelectedIndex()).getDataMax();
                    double dMin = net.get(resultsPane.getSelectedIndex()).getDataMin();

                    int count = 0;

                    for (int i = 0; i < lValue; i++) {
                        for (int j = 0; j < lValue; j++) {
                            for (int k = 0; k < 3; k++) {
                                Vector tempVec = map[i][j].getWeights();
                                if (inputDimensions % 3 == 0) {
                                    colorValues[count][k] = Integer.parseInt(String.valueOf((Math.round(255
                                            * (Double.parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                                if (inputDimensions % 3 == 1) {
                                    if (k == 0)
                                        colorValues[count][k] = 0;
                                    if (k == 1) {
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(0))))))));
                                    }
                                    if (k == 2)
                                        colorValues[count][k] = 0;
                                }
                                if (inputDimensions % 3 == 2) {
                                    if (k == 2) {
                                        colorValues[count][k] = 0;
                                    } else
                                        colorValues[count][k] = Integer
                                                .parseInt(String.valueOf((Math.round(255 * (Double
                                                        .parseDouble(String.valueOf(tempVec.elementAt(k))))))));
                                }
                            }
                            count++;
                        }
                    }

                    JFrame frame = new JFrame();

                    frame.setTitle("Color Map");
                    frame.setPreferredSize(new Dimension(525, 500));
                    frame.add(new DrawPanel(colorValues, lValue));
                    frame.pack();
                    frame.setVisible(true);
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow,
                            "This Feauture is only available for Self-Organizing Maps", "Not a Som Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Network does not exist", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    inputer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : getInput.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    getNet = new JFileChooser();
    getNet.setFileFilter(new ANNFileFilter());

    //saves the net, or opens save as dialog if net is not saved yet
    save.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                if (!path.get(resultsPane.getSelectedIndex()).equals("")) {
                    net.get(resultsPane.getSelectedIndex())
                            .save(new File(path.get(resultsPane.getSelectedIndex())));
                }

                else {
                    for (ActionListener a : saveAs.getActionListeners()) {
                        a.actionPerformed(ae);
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't save NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saver.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : save.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //opens dialog for saving the net
    saveAs.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result, override;
                String tempName;
                result = getNet.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION)
                    if ((new File(tempName = getNet.getSelectedFile().getName())).exists()
                            || (new File(tempName + ".ffn")).exists() || (new File(tempName + ".som")).exists()
                            || (new File(tempName + ".hfn")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                tempName + " already exists, do you want to override?", "File Exists",
                                JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                                if (tempName.endsWith(".ffn") || tempName.endsWith(".som")) {
                                    netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".ffn"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    netName.set(resultsPane.getSelectedIndex(),
                                            new StringBuffer(tempName + ".som"));
                                    title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                }
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());

                            } else
                                JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                        JOptionPane.ERROR_MESSAGE);
                        }
                    } else {
                        if (net.get(resultsPane.getSelectedIndex()).save(getNet.getSelectedFile())) {
                            if (tempName.endsWith(".ffn") || tempName.endsWith(".som")
                                    || tempName.endsWith(".hfn")) {
                                netName.set(resultsPane.getSelectedIndex(), new StringBuffer(tempName));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + " ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".ffn"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".ffn ");
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                netName.set(resultsPane.getSelectedIndex(),
                                        new StringBuffer(tempName + ".som"));
                                title.get(resultsPane.getSelectedIndex()).setText(tempName + ".som ");
                                path.set(resultsPane.getSelectedIndex(), getNet.getSelectedFile().getPath());
                            }
                        } else
                            JOptionPane.showMessageDialog(mainWindow, "Could not save file", "File Error",
                                    JOptionPane.ERROR_MESSAGE);
                    }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Save", "Existetial Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    saveAser.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : saveAs.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //loads a net
    load.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result;
            boolean test = true;
            String tempName;
            result = getNet.showOpenDialog(mainWindow);
            if (result == JFileChooser.APPROVE_OPTION) {
                tempName = getNet.getSelectedFile().getName();
                for (StringBuffer names : netName) {
                    if (names.toString().equals(tempName))
                        test = false;
                }
                if (test != false) {
                    //creates and sets the network configuration
                    if (tempName.endsWith(".ffn")) {
                        net.add(new FullyConnectedFeedForwardNet());
                    }
                    if (tempName.endsWith(".som")) {
                        net.add(new SelfOrganizingMap());
                    }
                    if (net.get(openNets).load(getNet.getSelectedFile()))
                        try {
                            //adds a close button to the top corner of each tab
                            title.add(new JLabel(tempName + " "));
                            close.add(new JButton("X"));
                            close.get(openNets).setActionCommand(tempName);
                            close.get(openNets)
                                    .setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                            close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                            tabPanel.add(new JPanel(new GridBagLayout()));
                            tabPanel.get(openNets).setOpaque(false);
                            GridBagConstraints grid = new GridBagConstraints();
                            grid.fill = GridBagConstraints.HORIZONTAL;
                            grid.gridx = 0;
                            grid.gridy = 0;
                            grid.weightx = 1;
                            tabPanel.get(openNets).add(title.get(openNets), grid);
                            grid.gridx = 1;
                            grid.gridy = 0;
                            grid.weightx = 0;
                            tabPanel.get(openNets).add(close.get(openNets), grid);

                            //adds a loading bar
                            loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                            loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                            loadingBar.get(openNets).setVisible(false);

                            path.add(getNet.getSelectedFile().getPath());

                            netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                            netName.add(new StringBuffer(tempName));
                            oneNet.add(new JPanel());
                            oneNet.get(openNets).setLayout(new GridBagLayout());
                            GridBagConstraints constraints = new GridBagConstraints();
                            constraints.fill = GridBagConstraints.BOTH;

                            //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                            readOut.add(new JTextArea(""));
                            readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                            readOut.get(openNets).setEditable(false);
                            constraints.gridx = 0;
                            constraints.gridy = 0;
                            constraints.weighty = 1.0;
                            constraints.weightx = 1.0;
                            constraints.gridwidth = 2;
                            constraints.ipady = 90;
                            oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                            constraints.fill = GridBagConstraints.HORIZONTAL;
                            constraints.gridx = 0;
                            constraints.gridy = 1;
                            constraints.ipady = 0;
                            constraints.gridwidth = 2;
                            constraints.anchor = GridBagConstraints.PAGE_END;

                            //add everythign to the tabbed pane
                            oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                            resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                            resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                            //display the starting configuration of the network
                            readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                            resultsPane.setSelectedIndex(openNets++);
                            if (tempName.endsWith(".ffn"))
                                printConnections();
                            if (tempName.endsWith(".som")) {
                                readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                                printInitMap();
                            }

                            //unfortunately difficult way that I made to add the close button functionality to close a tab
                            //it works, but there has to be a better way to do this
                            close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                                public void actionPerformed(final ActionEvent ae) {
                                    int result;
                                    result = 0;
                                    for (StringBuffer names : netName) {
                                        if (ae.getActionCommand().equals(names.toString())) {
                                            result = JOptionPane.showConfirmDialog(createFFN,
                                                    "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                    "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                            resultsPane.setSelectedIndex(netName.indexOf(names));
                                        }
                                    }
                                    if (result == JOptionPane.OK_OPTION) {
                                        net.remove(resultsPane.getSelectedIndex());
                                        oneNet.remove(resultsPane.getSelectedIndex());
                                        readOutLocale.remove(resultsPane.getSelectedIndex());
                                        readOut.remove(resultsPane.getSelectedIndex());
                                        loadingBar.remove(resultsPane.getSelectedIndex());
                                        tabPanel.remove(resultsPane.getSelectedIndex());
                                        title.remove(resultsPane.getSelectedIndex());
                                        close.remove(resultsPane.getSelectedIndex());
                                        netName.remove(resultsPane.getSelectedIndex());
                                        resultsPane.remove(resultsPane.getSelectedIndex());
                                        openNets--;
                                    }
                                }
                            });
                        } catch (Error e) {
                            JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                    "Formatting Error", JOptionPane.ERROR_MESSAGE);
                        }
                    else {
                        //if file was unable to load, remove the newly created neural network and display an error message
                        net.remove(openNets);
                        JOptionPane.showMessageDialog(mainWindow, "File Formatted Incorrectly",
                                "Formatting Error", JOptionPane.ERROR_MESSAGE);
                    }
                }

                else {
                    JOptionPane.showMessageDialog(mainWindow, "File Already Open", "Duality Error",
                            JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    //associates the load toolbar button with load from the file menu
    loader.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : load.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    textFileChooser = new JFileChooser();
    textFileChooser.setFileFilter(new TextFileFilter());

    //exports all text from readout to a text file
    exportOutput.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0) {
                int result;
                result = textFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    if (textFileChooser.getSelectedFile().exists()
                            || (new File(textFileChooser.getSelectedFile().getPath() + ".txt")).exists()) {
                        result = JOptionPane.showConfirmDialog(mainWindow,
                                "The File you have selected already Exists, do you want to Overwrite it?",
                                "File Exits", JOptionPane.YES_NO_OPTION);
                        if (result == JOptionPane.YES_OPTION) {
                            try {
                                if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                    FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                else
                                    FileUtils.writeStringToFile(
                                            new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                            readOut.get(resultsPane.getSelectedIndex()).getText());
                                JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                            } catch (Exception e) {
                                JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                        JOptionPane.ERROR_MESSAGE);
                            }
                        }
                    } else {
                        try {
                            if (textFileChooser.getSelectedFile().getPath().endsWith(".txt"))
                                FileUtils.writeStringToFile(textFileChooser.getSelectedFile(),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            else
                                FileUtils.writeStringToFile(
                                        new File(textFileChooser.getSelectedFile().getPath() + ".txt"),
                                        readOut.get(resultsPane.getSelectedIndex()).getText());
                            JOptionPane.showMessageDialog(mainWindow, "Succesfully wrote readout to file");
                        } catch (Exception e) {
                            JOptionPane.showMessageDialog(mainWindow, "Could not write to file", "Error",
                                    JOptionPane.ERROR_MESSAGE);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Nothing to Export", "Existential Error",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    projectFileChooser = new JFileChooser();
    projectFileChooser.setFileFilter(new ProjectFileFilter());

    //exports a neural network to a java/android project
    exportNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int result, override, override2;
            String tempName;
            String templateFile;
            String directory;
            String path;
            if (resultsPane.getTabCount() != 0) {
                result = projectFileChooser.showSaveDialog(mainWindow);
                if (result == JFileChooser.APPROVE_OPTION) {
                    path = projectFileChooser.getSelectedFile().getPath();
                    directory = projectFileChooser.getSelectedFile().getPath().substring(0,
                            projectFileChooser.getSelectedFile().getPath().lastIndexOf(File.separator));
                    tempName = projectFileChooser.getSelectedFile().getName();
                    if (projectFileChooser.getSelectedFile().exists()
                            || (new File(directory, tempName + ".java")).exists()) {
                        override = JOptionPane.showConfirmDialog(mainWindow,
                                "Java Class File" + tempName + " already exists, do you want to overwrite it?",
                                "File Exists", JOptionPane.YES_NO_OPTION);
                        if (override == JOptionPane.YES_OPTION) {
                            try {
                                if (!(new File(directory, "ann")).exists())
                                    FileUtils.copyDirectoryToDirectory(
                                            FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                            new File(directory));
                                if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Feed Forward Network")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".ffn");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".ffn")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                        .equals("Self-Organizing Map")) {
                                    templateFile = FileUtils.readFileToString(FileUtils
                                            .toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                    templateFile = templateFile.replaceAll("yourpackagename",
                                            (new File(directory)).getName());
                                    templateFile = templateFile.replaceAll("YourProjectName",
                                            projectFileChooser.getSelectedFile().getName());
                                    if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator + netName
                                                        .get(resultsPane.getSelectedIndex()).toString());
                                    else
                                        templateFile = templateFile.replaceAll("networkName",
                                                (new File(directory)).getName() + File.separator
                                                        + netName.get(resultsPane.getSelectedIndex()).toString()
                                                        + ".som");
                                    if (path.indexOf('.') > 0) {
                                        FileUtils.writeStringToFile(
                                                new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                                templateFile);
                                    } else
                                        FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                    if ((new File(directory,
                                            (tempName = netName.get(resultsPane.getSelectedIndex())
                                                    .toString()))).exists()
                                            || (new File(directory, tempName + ".som")).exists()) {
                                        override2 = JOptionPane.showConfirmDialog(mainWindow,
                                                "Neural Network " + tempName
                                                        + " already exists, do you want to overwrite it?",
                                                "File Exists", JOptionPane.YES_NO_OPTION);
                                        if (override2 == JOptionPane.YES_OPTION)
                                            if (net.get(resultsPane.getSelectedIndex())
                                                    .save(new File(directory + File.separator + tempName))) {
                                                JOptionPane.showMessageDialog(mainWindow, "Network Exported to "
                                                        + (new File(directory)).getName());
                                            } else {
                                                JOptionPane.showMessageDialog(mainWindow,
                                                        "Couldn't save neural network to file, the rest of the project is exported",
                                                        "Write Error", JOptionPane.ERROR_MESSAGE);
                                            }
                                    } else {
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                }
                            } catch (IOException io) {
                                System.out.println(io);
                            }

                        }
                    } else {
                        try {
                            if (!(new File(directory, "ann")).exists())
                                FileUtils.copyDirectoryToDirectory(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/")),
                                        new File(directory));
                            if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Feed Forward Network")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/FFNTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".ffn"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".ffn");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory + File.separator
                                        + (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory + File.separator + tempName + ".ffn"))
                                                .exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            } else if (netKind.get(resultsPane.getSelectedIndex()).toString()
                                    .equals("Self-Organizing Map")) {
                                templateFile = FileUtils.readFileToString(
                                        FileUtils.toFile(ClassLoader.getSystemResource("ann/SOMTemplate.txt")));
                                templateFile = templateFile.replaceAll("yourpackagename",
                                        (new File(directory)).getName());
                                templateFile = templateFile.replaceAll("YourProjectName",
                                        projectFileChooser.getSelectedFile().getName());
                                if (netName.get(resultsPane.getSelectedIndex()).toString().endsWith(".som"))
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString());
                                else
                                    templateFile = templateFile.replaceAll("networkName",
                                            (new File(directory)).getName() + File.separator
                                                    + netName.get(resultsPane.getSelectedIndex()).toString()
                                                    + ".som");
                                if (path.indexOf('.') > 0) {
                                    FileUtils.writeStringToFile(
                                            new File(path.substring(0, path.lastIndexOf('.')) + ".java"),
                                            templateFile);
                                } else
                                    FileUtils.writeStringToFile(new File(path + ".java"), templateFile);
                                if ((new File(directory,
                                        (tempName = netName.get(resultsPane.getSelectedIndex()).toString())))
                                                .exists()
                                        || (new File(directory, tempName + ".som")).exists()) {
                                    override2 = JOptionPane.showConfirmDialog(mainWindow,
                                            "Neural Network " + tempName
                                                    + " already exists, do you want to overwrite it?",
                                            "File Exists", JOptionPane.YES_NO_OPTION);
                                    if (override2 == JOptionPane.YES_OPTION)
                                        if (net.get(resultsPane.getSelectedIndex())
                                                .save(new File(directory + File.separator + tempName))) {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Network Exported to " + (new File(directory)).getName());
                                        } else {
                                            JOptionPane.showMessageDialog(mainWindow,
                                                    "Couldn't save neural network to file, the rest of the project is exported",
                                                    "Write Error", JOptionPane.ERROR_MESSAGE);
                                        }
                                } else {
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .save(new File(directory + File.separator + tempName))) {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Network Exported to " + (new File(directory)).getName());
                                    } else {
                                        JOptionPane.showMessageDialog(mainWindow,
                                                "Couldn't save neural network to file, the rest of the project is exported",
                                                "Write Error", JOptionPane.ERROR_MESSAGE);
                                    }
                                }
                            }
                        } catch (IOException io) {
                            System.out.println(io);
                        }
                    }
                }
            } else {
                JOptionPane.showMessageDialog(mainWindow, "Can't Export NonExistent Neural Network",
                        "Existential Error", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    toJava.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : exportNet.getActionListeners())
                a.actionPerformed(ae);
        }
    });

    //settings menu
    changeConfig.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Feed Forward Network")) {

                modifyFFNDialog = new JDialog(mainWindow, "Network Settings", true);
                modifyFFNDialog.setSize(500, 500);
                modifyFFNDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifyFFNDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                learningRateL = new JLabel("Set Learning Rate:");
                modifyFFNDialog.add(learningRateL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                learningRateTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                learningRateTF.setText("");
                modifyFFNDialog.add(learningRateTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                momentumL = new JLabel("Set Momentum:");
                modifyFFNDialog.add(momentumL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                momentumTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                momentumTF.setText("");
                modifyFFNDialog.add(momentumTF, asdf);
                asdf.gridx = 7;
                asdf.gridy = 5;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                /*asdf.gridwidth = 2;
                asdf.gridheight = 1;
                asdf.gridx = 7;
                asdf.gridy = 6;
                setNoise = new JLabel("Use Noise: ");
                modifyFFNDialog.add(setNoise, asdf);
                asdf.gridx = 7;
                asdf.gridy = 7;
                asdf.gridwidth = 1;
                noiseOn = new JRadioButton("yes");
                noiseOff = new JRadioButton("no");
                noiseGroup = new ButtonGroup();
                noiseGroup.add(noiseOn);
                noiseGroup.add(noiseOff);
                modifyFFNDialog.add(noiseOn,asdf);
                asdf.gridx = 8;
                asdf.gridy = 7;
                modifyFFNDialog.add(noiseOff,asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.gridwidth = 2;
                setNoiseRange = new JButton("Set Noise Range");
                modifyFFNDialog.add(setNoiseRange,asdf);
                asdf.gridx = 7;
                asdf.gridy = 9;
                setNoiseTiming = new JButton("Set Noise Timing");
                modifyFFNDialog.add(setNoiseTiming,asdf);*/
                asdf.gridx = 7;
                asdf.gridy = 10;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 11;
                setTrainingStyle = new JLabel("Set Training Style:");
                modifyFFNDialog.add(setTrainingStyle, asdf);
                asdf.gridx = 7;
                asdf.gridy = 12;
                asdf.gridwidth = 1;
                batchOn = new JRadioButton("batch");
                onlineOn = new JRadioButton("online");
                batchGroup = new ButtonGroup();
                batchGroup.add(batchOn);
                batchGroup.add(onlineOn);
                modifyFFNDialog.add(batchOn, asdf);
                asdf.gridx = 8;
                modifyFFNDialog.add(onlineOn, asdf);
                asdf.gridx = 7;
                asdf.gridy = 13;
                asdf.gridwidth = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 14;
                modifyBiases = new JButton("Modify Biases");
                modifyFFNDialog.add(modifyBiases, asdf);
                asdf.gridx = 7;
                asdf.gridy = 15;
                trainingCompletionButton = new JButton("Modify End Condition");
                modifyFFNDialog.add(trainingCompletionButton, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifyFFNDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifyFFN = new JButton("OK");
                modifyFFNDialog.add(modifyFFN, asdf);
                asdf.gridx = 7;
                cancelModifyFFN = new JButton("Cancel");
                modifyFFNDialog.add(cancelModifyFFN, asdf);
                settings.setText("");
                settings.append(
                        "\n\n\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                settings.append("\n\nTraining Style: ");
                if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                    settings.append("batch");
                    batchOn.setSelected(true);
                } else {
                    settings.append("online");
                    onlineOn.setSelected(true);
                }
                settings.append("\n\nTraining End Condition: ");
                if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                    settings.append("Iterative");
                    settings.append(
                            "\n\nIterations: " + net.get(resultsPane.getSelectedIndex()).getIterations());
                } else {
                    settings.append("Ideal Error");
                    settings.append(
                            "\n\nIdeal Error: " + net.get(resultsPane.getSelectedIndex()).getIdealError());
                }

                //expiremental feature, needs work on the back end to be properly implemented   
                modifyBiases.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        JButton addBiases, removeBiases;

                        biasesDialog = new JDialog(modifyFFNDialog, "Set Biases");
                        biasesDialog.setSize(200, 46);
                        biasesDialog.setLayout(new GridLayout(2, 1));
                        addBiases = new JButton("Add Bias");
                        removeBiases = new JButton("Remove Bias");

                        biasesDialog.add(addBiases);
                        biasesDialog.add(removeBiases);

                        addBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel, whatBiasValueLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode, whatBiasValue;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                addBiasDialog = new JDialog(modifyFFNDialog, "Add Bias");
                                addBiasDialog.setSize(756, 90);
                                addBiasDialog.setLayout(new GridLayout(4, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will get the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasValueLabel = new JLabel("What Value will the Bias have?");
                                whatBiasValue = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                addBiasDialog.add(howManyBiasLayersLabel);
                                addBiasDialog.add(howManyBiasLayers);
                                addBiasDialog.add(whatBiasNodeLabel);
                                addBiasDialog.add(whatBiasNode);
                                addBiasDialog.add(whatBiasValueLabel);
                                addBiasDialog.add(whatBiasValue);
                                addBiasDialog.add(addBiasOK);
                                addBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")
                                                && !whatBiasValue.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).addBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1,
                                                    Double.parseDouble(whatBiasValue.getText()))) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                addBiasDialog.setVisible(true);
                            }
                        });

                        removeBiases.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                JLabel howManyBiasLayersLabel, whatBiasNodeLabel;
                                final JFormattedTextField howManyBiasLayers, whatBiasNode;
                                JButton addBiasOK, addBiasCancel;
                                biasesDialog.setVisible(false);
                                removeBiasDialog = new JDialog(modifyFFNDialog, "Remove Bias");
                                removeBiasDialog.setSize(756, 90);
                                removeBiasDialog.setLayout(new GridLayout(3, 2));
                                howManyBiasLayersLabel = new JLabel("What Layer will lose the Bias?");
                                howManyBiasLayers = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                whatBiasNodeLabel = new JLabel("Which Node will get the Bias?");
                                whatBiasNode = new JFormattedTextField(
                                        new NumberFormatter(NumberFormat.getIntegerInstance()));
                                addBiasOK = new JButton("OK");
                                addBiasCancel = new JButton("Cancel");
                                removeBiasDialog.add(howManyBiasLayersLabel);
                                removeBiasDialog.add(howManyBiasLayers);
                                removeBiasDialog.add(whatBiasNodeLabel);
                                removeBiasDialog.add(whatBiasNode);
                                removeBiasDialog.add(addBiasOK);
                                removeBiasDialog.add(addBiasCancel);

                                addBiasOK.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        if (!howManyBiasLayers.getText().equals("")
                                                && !whatBiasNode.getText().equals("")) {
                                            addBiasDialog.setVisible(false);
                                            if (net.get(resultsPane.getSelectedIndex()).removeBias(
                                                    Integer.parseInt(howManyBiasLayers.getText()) - 1,
                                                    Integer.parseInt(whatBiasNode.getText()) - 1)) {
                                            } else {
                                                JOptionPane.showMessageDialog(modifyFFNDialog,
                                                        "Existential Error", "Invalid Node for Bias",
                                                        JOptionPane.ERROR_MESSAGE);
                                            }
                                        } else {
                                            JOptionPane.showMessageDialog(modifyFFNDialog, "Form Error",
                                                    "Form not completed", JOptionPane.ERROR_MESSAGE);
                                        }
                                    }
                                });
                                addBiasCancel.addActionListener(new ActionListener() {
                                    public void actionPerformed(ActionEvent ae) {
                                        addBiasDialog.setVisible(false);
                                    }
                                });

                                removeBiasDialog.setVisible(true);
                            }
                        });

                        biasesDialog.setVisible(true);

                    }
                });

                trainingCompletionButton.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        final JDialog iterationsDialog;
                        JLabel numberOfIterationsLabel;
                        final JFormattedTextField numberOfIterations;
                        JButton iterationsOK, iterationsCancel;
                        iterationsDialog = new JDialog(modifyFFNDialog, "Set Iterations");
                        iterationsDialog.setSize(765, 75);
                        iterationsDialog.setLayout(new GridLayout(2, 2));
                        numberOfIterationsLabel = new JLabel("How Many Iterations do you want to Train?");
                        numberOfIterations = new JFormattedTextField(
                                new NumberFormatter(NumberFormat.getIntegerInstance()));
                        iterationsOK = new JButton("OK");
                        iterationsCancel = new JButton("Cancel");
                        iterationsDialog.add(numberOfIterationsLabel);
                        iterationsDialog.add(numberOfIterations);
                        iterationsDialog.add(iterationsOK);
                        iterationsDialog.add(iterationsCancel);
                        iterationsOK.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                if (!numberOfIterations.getText().equals("")) {
                                    iterationsDialog.setVisible(false);
                                    if (net.get(resultsPane.getSelectedIndex())
                                            .setIterations(Integer.parseInt(numberOfIterations.getText()))) {
                                        settings.setText("");
                                        settings.append("\n\n\n\nLearning Rate: "
                                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                                        settings.append("\n\nMomentum: "
                                                + net.get(resultsPane.getSelectedIndex()).getMomentum());
                                        settings.append("\n\nTraining Style: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                                            settings.append("batch");
                                            batchOn.setSelected(true);
                                        } else {
                                            settings.append("online");
                                            onlineOn.setSelected(true);
                                        }
                                        settings.append("\n\nTraining End Condition: ");
                                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                                            settings.append("Iterative");
                                            settings.append("\n\nIterations: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                                        } else {
                                            settings.append("Ideal Error");
                                            settings.append("\n\nIdeal Error: "
                                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                                        }
                                        modifyFFNDialog.setVisible(true);
                                    } else {
                                        JOptionPane.showMessageDialog(modifyFFNDialog,
                                                "Invalid Number of Iterations", "Math Error",
                                                JOptionPane.ERROR_MESSAGE);
                                    }
                                } else {
                                    JOptionPane.showMessageDialog(iterationsDialog, "Field not filled out",
                                            "Form Error", JOptionPane.ERROR_MESSAGE);
                                }
                            }
                        });
                        iterationsCancel.addActionListener(new ActionListener() {
                            public void actionPerformed(ActionEvent ae) {
                                iterationsDialog.setVisible(false);
                            }
                        });
                        iterationsDialog.setVisible(true);
                    }
                });

                modifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (!learningRateTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                            learningRateTF.setText("");
                        }
                        if (!momentumTF.getText().equals("")) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                            momentumTF.setText("");
                        }
                        if (batchOn.isSelected()) {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(true);
                        } else {
                            net.get(resultsPane.getSelectedIndex()).setBatchvOnline(false);
                        }

                        modifyFFNDialog.setVisible(false);
                    }
                });

                learningRateTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (learningRateTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(learningRateTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");

                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                momentumTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (momentumTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setMomentum(Double.parseDouble(momentumTF.getText()));
                        }
                        settings.setText("");
                        settings.append("\n\n\n\nLearning Rate: "
                                + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                        settings.append(
                                "\n\nMomentum: " + net.get(resultsPane.getSelectedIndex()).getMomentum());
                        settings.append("\n\nTraining Style: ");
                        if (net.get(resultsPane.getSelectedIndex()).getBatchvOnline()) {
                            settings.append("batch");
                            batchOn.setSelected(true);
                        } else {
                            settings.append("online");
                            onlineOn.setSelected(true);
                        }
                        settings.append("\n\nTraining End Condition: ");
                        if (net.get(resultsPane.getSelectedIndex()).getUseIteration()) {
                            settings.append("Iterative");
                            settings.append("\n\nIterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getIterations());
                        } else {
                            settings.append("Ideal Error");
                            settings.append("\n\nIdeal Error: "
                                    + net.get(resultsPane.getSelectedIndex()).getIdealError());
                        }
                        modifyFFNDialog.setVisible(true);
                    }
                });
                cancelModifyFFN.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifyFFNDialog.setVisible(false);
                    }
                });
                modifyFFNDialog.setVisible(true);
            }
            if (resultsPane.getTabCount() != 0
                    && netKind.get(resultsPane.getSelectedIndex()).toString().equals("Self-Organizing Map")) {
                modifySOMDialog = new JDialog(mainWindow, "Network Settings", true);
                modifySOMDialog.setSize(500, 400);
                modifySOMDialog.setLayout(new GridBagLayout());
                GridBagConstraints asdf = new GridBagConstraints();
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 0;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 5;
                asdf.gridheight = 15;
                asdf.weightx = 1.0;
                asdf.weighty = 1.0;
                asdf.gridx = 0;
                asdf.gridy = 1;
                asdf.fill = GridBagConstraints.BOTH;
                settings = new JTextArea();
                settings.setEditable(false);
                settings.setBorder(BorderFactory.createEtchedBorder());
                modifySOMDialog.add(settings, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridwidth = 5;
                asdf.gridheight = 1;
                asdf.gridx = 0;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.gridwidth = 2;
                asdf.gridx = 7;
                asdf.gridy = 0;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 1;
                mIterationL = new JLabel("Set Number of Iterations:");
                modifySOMDialog.add(mIterationL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 2;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mIterationTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
                mIterationTF.setText("");
                modifySOMDialog.add(mIterationTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 3;
                mLRL = new JLabel("Set Learning Rate (0-1):");
                modifySOMDialog.add(mLRL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 4;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mLRTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mLRTF.setText("");
                modifySOMDialog.add(mLRTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 5;
                mMaxL = new JLabel("Set Data Maximum:");
                modifySOMDialog.add(mMaxL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 6;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMaxTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMaxTF.setText("");
                modifySOMDialog.add(mMaxTF, asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridx = 7;
                asdf.gridy = 7;
                mMinL = new JLabel("Set Data Minimum:");
                modifySOMDialog.add(mMinL, asdf);
                asdf.gridx = 7;
                asdf.gridy = 8;
                asdf.fill = GridBagConstraints.HORIZONTAL;
                mMinTF = new JFormattedTextField(new NumberFormatter(NumberFormat.getNumberInstance()));
                mMinTF.setText("");
                modifySOMDialog.add(mMinTF, asdf);
                asdf.fill = GridBagConstraints.HORIZONTAL;
                asdf.gridy = 16;
                modifySOMDialog.add(new JSeparator(), asdf);
                asdf.fill = GridBagConstraints.NONE;
                asdf.gridwidth = 1;
                asdf.gridx = 3;
                asdf.gridy = 17;
                asdf.anchor = GridBagConstraints.PAGE_END;
                modifySOM = new JButton("OK");
                modifySOMDialog.add(modifySOM, asdf);
                asdf.gridx = 7;
                cancelModifySOM = new JButton("Cancel");
                modifySOMDialog.add(cancelModifySOM, asdf);
                settings.setText("");
                settings.append("\n\nNumber of Iterations: "
                        + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                settings.append(
                        "\n\nLearning Rate: " + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                settings.append("\n\nData Maximum: " + net.get(resultsPane.getSelectedIndex()).getDataMax());
                settings.append("\n\nData Minimum: " + net.get(resultsPane.getSelectedIndex()).getDataMin());

                mIterationTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if (mIterationTF.getText() != "") {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        }
                    }
                });

                mLRTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mLRTF.getText() != "") && ((Double.parseDouble(mLRTF.getText())) <= 1.0)) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setLearningRate(Double.parseDouble(mLRTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mLRTF, "Pick a number from 0 - 1", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                            mLRTF.setText("");
                        }
                    }
                });

                mMaxTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMaxTF.getText() != "") && (((Double.parseDouble(mMaxTF.getText())) > net
                                .get(resultsPane.getSelectedIndex()).getDataMin()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMax(Double.parseDouble(mMaxTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMaxTF, "Max value must be greater than Min value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMaxTF.setText("");
                        }
                    }
                });

                mMinTF.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        if ((mMinTF.getText() != "") && ((Double.parseDouble(mMinTF.getText())) < net
                                .get(resultsPane.getSelectedIndex()).getDataMax())) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setDataMin(Double.parseDouble(mMinTF.getText()));

                            settings.setText("");
                            settings.append("\n\nNumber of Iterations: "
                                    + net.get(resultsPane.getSelectedIndex()).getNumIterations());
                            settings.append("\n\nLearning Rate: "
                                    + net.get(resultsPane.getSelectedIndex()).getLearningRate());
                            settings.append("\n\nData Maximum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMax());
                            settings.append("\n\nData Minimum: "
                                    + net.get(resultsPane.getSelectedIndex()).getDataMin());
                        } else {
                            JOptionPane.showMessageDialog(mMinTF, "Min value must be less than Max value",
                                    "Incorrect Value", JOptionPane.ERROR_MESSAGE);
                            mMinTF.setText("");
                        }
                    }
                });

                modifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        boolean error = false;
                        if (!("".equals(mIterationTF.getText()))) {
                            net.get(resultsPane.getSelectedIndex())
                                    .setNumIterations(Integer.parseInt(mIterationTF.getText()));
                        }
                        if (!("".equals(mLRTF.getText()))) {
                            if ((Double.parseDouble(mLRTF.getText())) > 1.0) {
                                error = true;
                                mLRTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setLearningRate(Double.parseDouble(mLRTF.getText()));
                        }
                        if (!("".equals(mMaxTF.getText()))) {
                            if (((Double.parseDouble(mMaxTF.getText())) < net
                                    .get(resultsPane.getSelectedIndex()).getDataMin())) {
                                error = true;
                                mMaxTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMax(Double.parseDouble(mMaxTF.getText()));
                        }
                        if (!("".equals(mMinTF.getText()))) {
                            if ((Double.parseDouble(mMinTF.getText())) > net.get(resultsPane.getSelectedIndex())
                                    .getDataMax()) {
                                error = true;
                                mMinTF.setText("");
                            } else
                                net.get(resultsPane.getSelectedIndex())
                                        .setDataMin(Double.parseDouble(mMinTF.getText()));
                        }

                        if (error == true) {
                            JOptionPane.showMessageDialog(modifySOMDialog,
                                    "One or more fields have incorrect values", "Incorrect Value",
                                    JOptionPane.ERROR_MESSAGE);
                        } else {
                            modifySOMDialog.setVisible(false);
                            readOut.get(resultsPane.getSelectedIndex()).append("\nUpdated Map:\n");
                            printInitMap();
                        }

                    }
                });

                cancelModifySOM.addActionListener(new ActionListener() {
                    public void actionPerformed(ActionEvent ae) {
                        modifySOMDialog.setVisible(false);
                    }
                });

                modifySOMDialog.setVisible(true);
            }
        }

    });

    modify.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : changeConfig.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //The following code is for the newNet button under file:

    //create a dialog to be activated when "New Network" is pressed in the file menu
    newDialog = new JDialog(mainWindow, "New Network", true);
    newDialog.setSize(375, 100);
    newDialog.setLayout(new GridLayout(3, 2)); //going to change the layout to GridBagLayout for better customization

    name = new JLabel("Network Name:");
    newName = new JTextField(10);
    type = new JLabel("Type of Network:");
    netTypes = new String[] { "Feed Forward Network", "Self-Organizing Map" };
    netType = new JComboBox<String>(netTypes);
    netType.setSelectedItem("Feed Forward Network");
    createNewNet = new JButton("create");
    cancelNew = new JButton("cancel");
    newDialog.add(name);
    newDialog.add(newName);
    newDialog.add(type);
    newDialog.add(netType);
    newDialog.add(createNewNet);
    newDialog.add(cancelNew);

    //utilities for a second dialog(Feed Forward Network) in the process of creating a new network   
    number = new JLabel("Enter the number of layers you want for your network:");
    howManyLayers = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFNArchitecture = new JButton("OK");
    cancelFFN = new JButton("Cancel");

    howManyNodes = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    createFFN = new JButton("OK");
    cancelNodes = new JButton("Cancel");

    //Written by Michael Scott
    somLattice = new JLabel("   Lattice number for your Map:");
    somLatticeField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somLatticeField.setFocusLostBehavior(1);
    somMax = new JLabel("   Maximum value of your input (if known):");
    somMaxField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMaxField.setFocusLostBehavior(1);
    somMin = new JLabel("   Minimum value of your input (if known):");
    somMinField = new JFormattedTextField(new NumberFormatter(NumberFormat.getInstance()));
    somMinField.setFocusLostBehavior(1);
    somDim = new JLabel("   Node Dimensions:");
    somDimField = new JFormattedTextField(new NumberFormatter(NumberFormat.getIntegerInstance()));
    somDimField.setFocusLostBehavior(1);
    createSOM = new JButton("OK");
    cancelSOM = new JButton("Cancel");

    //displays the newDialog window when newNet is pressed
    newNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {

            newDialog.setVisible(true);
        }
    });

    newwer.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(true);
        }
    });

    //makes hitting enter in the text box do the same thing as clicking "create"
    newName.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createNewNet.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //when create net is pressed, this reads the selections from the newNet dialog and creates the approriate next dialog
    createNewNet.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            int test;
            test = 0;
            for (StringBuffer names : netName) {
                if (names.toString().equals(newName.getText()))
                    test = 1;
            }
            if (test == 0)
                if (!newName.getText().equals("")) {
                    if (netType.getSelectedIndex() == 0) { //if the net selected is Feed Forward, create and display the prompt for a feed forward network
                        newDialog.setVisible(false);
                        fFNDialog = new JDialog(mainWindow, newName.getText(), true);
                        fFNDialog.setSize(919, 65);
                        fFNDialog.setLayout(new GridLayout(2, 2));
                        fFNDialog.add(number);
                        fFNDialog.add(howManyLayers);
                        fFNDialog.add(createFFNArchitecture);
                        fFNDialog.add(cancelFFN);
                        fFNDialog.setVisible(true);
                    }
                    //Written by Michael Scott
                    if (netType.getSelectedIndex() == 1) {
                        newDialog.setVisible(false);
                        sOMDialog = new JDialog(mainWindow, newName.getText(), true);
                        sOMDialog.setSize(500, 180);
                        sOMDialog.setLayout(new GridLayout(5, 2));
                        sOMDialog.add(somLattice);
                        sOMDialog.add(somLatticeField);
                        sOMDialog.add(somDim);
                        sOMDialog.add(somDimField);
                        sOMDialog.add(somMax);
                        sOMDialog.add(somMaxField);
                        sOMDialog.add(somMin);
                        sOMDialog.add(somMinField);
                        sOMDialog.add(createSOM);
                        sOMDialog.add(cancelSOM);
                        sOMDialog.setVisible(true);

                    }
                } else
                    JOptionPane.showMessageDialog(createNewNet, "Network must have a Name",
                            "Namelessness Error", JOptionPane.ERROR_MESSAGE);
            else {
                JOptionPane.showMessageDialog(createNewNet, "Network " + newName.getText() + " already exists",
                        "Existential Naming Error", JOptionPane.ERROR_MESSAGE);
                newName.setText("");
            }
        }

    });
    //beginning of section about creating Feed Forward Networks   
    //cancel clears the name field and hides the newDialog dialog
    cancelNew.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newDialog.setVisible(false);
            newName.setText("");
        }
    });

    //makes hitting enter the same as clicking "ok"
    howManyLayers.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFNArchitecture.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //create a prompt for the first layer to determine how many nodes will go into the first layer
    createFFNArchitecture.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyLayers.getText().equals("")
                    && (layers = Integer.parseInt(howManyLayers.getText())) > 1) {
                nodeConfiguration = new int[layers]; //create an array to hold the node configuration that will be passed to the Net constructor
                layer = 1; //create a variable to hold the current layer the prompt series is on
                numberofNodes = new JLabel("How many nodes do you want in layer " + layer + "?");
                fFNDialog.setVisible(false);
                howManyNodesDialog = new JDialog(mainWindow, newName.getText(), true);
                howManyNodesDialog.setSize(919, 65);
                howManyNodesDialog.setLayout(new GridLayout(2, 2));
                howManyNodesDialog.add(numberofNodes);
                howManyNodesDialog.add(howManyNodes);
                howManyNodesDialog.add(createFFN);
                howManyNodesDialog.add(cancelNodes);
                howManyNodesDialog.setVisible(true);
            } else {
                //if the string is not valid, pop up an error message
                JOptionPane.showMessageDialog(fFNDialog,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 1</html>",
                        "Out of Bounds", JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //runs each time ok is pressed, until all the layers have a vaule for the number of nodes in the layer
    createFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (!howManyNodes.getText().equals("")
                    && (nodeConfiguration[layer - 1] = Integer.parseInt(howManyNodes.getText())) > 0) {
                if (layer == layers) {
                    try {
                        //adds a close button to the top corner of each tab
                        title.add(new JLabel(newName.getText() + " "));
                        close.add(new JButton("X"));
                        close.get(openNets).setActionCommand(newName.getText());
                        close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                        close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                        tabPanel.add(new JPanel(new GridBagLayout()));
                        tabPanel.get(openNets).setOpaque(false);
                        GridBagConstraints grid = new GridBagConstraints();
                        grid.fill = GridBagConstraints.HORIZONTAL;
                        grid.gridx = 0;
                        grid.gridy = 0;
                        grid.weightx = 1;
                        tabPanel.get(openNets).add(title.get(openNets), grid);
                        grid.gridx = 1;
                        grid.gridy = 0;
                        grid.weightx = 0;
                        tabPanel.get(openNets).add(close.get(openNets), grid);

                        //adds a loading bar
                        loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                        loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                        loadingBar.get(openNets).setVisible(false);
                        //creates and sets the network configuration
                        net.add(new FullyConnectedFeedForwardNet(nodeConfiguration));

                        netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                        netName.add(new StringBuffer(newName.getText()));
                        oneNet.add(new JPanel());
                        oneNet.get(openNets).setLayout(new GridBagLayout());
                        GridBagConstraints constraints = new GridBagConstraints();
                        constraints.fill = GridBagConstraints.BOTH;

                        //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                        readOut.add(new JTextArea(""));
                        readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                        readOut.get(openNets).setEditable(false);
                        constraints.gridx = 0;
                        constraints.gridy = 0;
                        constraints.weighty = 1.0;
                        constraints.weightx = 1.0;
                        constraints.gridwidth = 2;
                        constraints.ipady = 90;
                        oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                        constraints.fill = GridBagConstraints.HORIZONTAL;
                        constraints.gridx = 0;
                        constraints.gridy = 1;
                        constraints.ipady = 0;
                        constraints.gridwidth = 2;
                        constraints.anchor = GridBagConstraints.PAGE_END;

                        //add everythign to the tabbed pane
                        oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                        resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                        resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                        path.add("");

                        //display the starting configuration of the network
                        readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                        resultsPane.setSelectedIndex(openNets++);
                        printConnections();

                        //erases all the text in the setup fields and closes the window
                        howManyNodes.setValue(null);
                        howManyLayers.setText("");
                        newName.setText("");
                        howManyNodesDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createFFN,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (OutOfMemoryError e) {
                        JOptionPane.showMessageDialog(mainWindow,
                                "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                                "Memory Error", JOptionPane.ERROR_MESSAGE);
                    }
                } else {
                    layer++;
                    howManyNodes.setText("");
                    numberofNodes.setText("How many nodes do you want in layer " + layer + "?");
                }

            } else {
                JOptionPane.showMessageDialog(createFFN,
                        "<html>Number Out of Bounds<br>Please Enter a Number Greater than 0", "Out of Bounds",
                        JOptionPane.ERROR_MESSAGE);
            }
        }
    });

    //makes hitting enter in text box the same as clicking ok
    howManyNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            for (ActionListener a : createFFN.getActionListeners()) {
                a.actionPerformed(ae);
            }
        }
    });

    //cancels the node prompt
    cancelNodes.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            howManyNodes.setText("");
            howManyNodesDialog.setVisible(false);
        }
    });

    //cancel clears both name fields so far filled in the series of dialogs and hides the dialog
    cancelFFN.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            howManyLayers.setText("");
            fFNDialog.setVisible(false);
        }
    });
    //end of section about creating FFNs
    //end of section about newNet   

    //Method to create a SOM
    createSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            if (somLatticeField.getText().equals("") || somDimField.getText().equals("")) {
                JOptionPane.showMessageDialog(createSOM, "<html>Empty Field<br>Please Fill All Fields",
                        "Empty Field", JOptionPane.ERROR_MESSAGE);
            } else {
                if (somMaxField.getText().equals(""))
                    somMaxField.setText("100");
                if (somMinField.getText().equals(""))
                    somMinField.setText("0");
                if (Double.parseDouble(somMaxField.getText().replace(",", "")) < Double
                        .parseDouble(somMinField.getText().replace(",", ""))) {
                    JOptionPane.showMessageDialog(createSOM, "MIN GREATER THAN MAX!!!!", "Stupidity Error",
                            JOptionPane.ERROR_MESSAGE);
                }

                try {
                    //adds a close button to the top corner of each tab
                    title.add(new JLabel(newName.getText() + " "));
                    close.add(new JButton("X"));
                    close.get(openNets).setActionCommand(newName.getText());
                    close.get(openNets).setBorder(BorderFactory.createEtchedBorder(EtchedBorder.LOWERED));
                    close.get(openNets).setMargin(new Insets(0, 0, 0, 0));
                    tabPanel.add(new JPanel(new GridBagLayout()));
                    tabPanel.get(openNets).setOpaque(false);
                    GridBagConstraints grid = new GridBagConstraints();
                    grid.fill = GridBagConstraints.HORIZONTAL;
                    grid.gridx = 0;
                    grid.gridy = 0;
                    grid.weightx = 1;
                    tabPanel.get(openNets).add(title.get(openNets), grid);
                    grid.gridx = 1;
                    grid.gridy = 0;
                    grid.weightx = 0;
                    tabPanel.get(openNets).add(close.get(openNets), grid);

                    //adds a loading bar
                    loadingBar.add(new JLabel("", loadingImage, SwingConstants.CENTER));
                    loadingBar.get(openNets).setHorizontalTextPosition(SwingConstants.LEFT);
                    loadingBar.get(openNets).setVisible(false);
                    //creates and sets the network configuration
                    net.add(new SelfOrganizingMap());

                    netKind.add(new StringBuffer(netType.getSelectedItem().toString()));
                    netName.add(new StringBuffer(newName.getText()));
                    oneNet.add(new JPanel());
                    oneNet.get(openNets).setLayout(new GridBagLayout());
                    GridBagConstraints constraints = new GridBagConstraints();
                    constraints.fill = GridBagConstraints.BOTH;

                    //creates the readOut space and formats it so that the scroll pane/text changes size with the window, reserves space for the loading bar
                    readOut.add(new JTextArea(""));
                    readOutLocale.add(new JScrollPane(readOut.get(openNets)));
                    readOut.get(openNets).setEditable(false);
                    constraints.gridx = 0;
                    constraints.gridy = 0;
                    constraints.weighty = 1.0;
                    constraints.weightx = 1.0;
                    constraints.gridwidth = 2;
                    constraints.ipady = 90;
                    oneNet.get(openNets).add(readOutLocale.get(openNets), constraints);
                    constraints.fill = GridBagConstraints.HORIZONTAL;
                    constraints.gridx = 0;
                    constraints.gridy = 1;
                    constraints.ipady = 0;
                    constraints.gridwidth = 2;
                    constraints.anchor = GridBagConstraints.PAGE_END;

                    //add everythign to the tabbed pane
                    oneNet.get(openNets).add(loadingBar.get(openNets), constraints);
                    resultsPane.addTab(netName.get(openNets).toString(), oneNet.get(openNets));
                    resultsPane.setTabComponentAt(openNets, tabPanel.get(openNets));

                    path.add("");

                    //display the starting configuration of the network
                    readOut.get(openNets).append("Network: " + netName.get(openNets) + "\n\n");
                    resultsPane.setSelectedIndex(openNets++);
                    try {
                        net.get(resultsPane.getSelectedIndex())
                                .setLatticeValue(Integer.parseInt(somLatticeField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMax(Double.parseDouble(somMaxField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setDataMin(Double.parseDouble(somMinField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex())
                                .setInputDimensions(Integer.parseInt(somDimField.getText().replace(",", "")));
                        net.get(resultsPane.getSelectedIndex()).runNet();
                        readOut.get(resultsPane.getSelectedIndex()).append("Initial Untrained Map:\n");
                        printInitMap();

                        if (!getColorMap.isVisible()) {
                            util.addSeparator();
                            util.add(getColorMap);
                            getColorMap.setVisible(true);
                        }

                        //erases all the text in the setup fields and closes the window
                        newName.setText("");
                        somLatticeField.setText("");
                        somDimField.setText("");
                        somMaxField.setText("");
                        somMinField.setText("");
                        sOMDialog.setVisible(false);

                        //unfortunately difficult way that I made to add the close button functionality to close a tab
                        //it works, but there has to be a better way to do this
                        close.get(resultsPane.getSelectedIndex()).addActionListener(new ActionListener() {
                            public void actionPerformed(final ActionEvent ae) {
                                int result;
                                result = 0;
                                for (StringBuffer names : netName) {
                                    if (ae.getActionCommand().equals(names.toString())) {
                                        result = JOptionPane.showConfirmDialog(createSOM,
                                                "<html>Exiting Without Saving can Cause you to Lose your Progress<br>Are you sure you want to Continue?</html>",
                                                "Close Network", JOptionPane.OK_CANCEL_OPTION);
                                        resultsPane.setSelectedIndex(netName.indexOf(names));
                                    }
                                }
                                if (result == JOptionPane.OK_OPTION) {
                                    net.remove(resultsPane.getSelectedIndex());
                                    oneNet.remove(resultsPane.getSelectedIndex());
                                    readOutLocale.remove(resultsPane.getSelectedIndex());
                                    readOut.remove(resultsPane.getSelectedIndex());
                                    loadingBar.remove(resultsPane.getSelectedIndex());
                                    tabPanel.remove(resultsPane.getSelectedIndex());
                                    title.remove(resultsPane.getSelectedIndex());
                                    close.remove(resultsPane.getSelectedIndex());
                                    netName.remove(resultsPane.getSelectedIndex());
                                    resultsPane.remove(resultsPane.getSelectedIndex());
                                    openNets--;
                                }
                            }
                        });
                    } catch (Exception e) {
                        net.remove(resultsPane.getSelectedIndex());
                        oneNet.remove(resultsPane.getSelectedIndex());
                        readOutLocale.remove(resultsPane.getSelectedIndex());
                        readOut.remove(resultsPane.getSelectedIndex());
                        loadingBar.remove(resultsPane.getSelectedIndex());
                        tabPanel.remove(resultsPane.getSelectedIndex());
                        title.remove(resultsPane.getSelectedIndex());
                        close.remove(resultsPane.getSelectedIndex());
                        netName.remove(resultsPane.getSelectedIndex());
                        resultsPane.remove(resultsPane.getSelectedIndex());
                        openNets--;
                        JOptionPane.showMessageDialog(sOMDialog, "Numbers too large to parse", "Parse error",
                                JOptionPane.ERROR_MESSAGE);
                    }
                } catch (OutOfMemoryError e) {
                    JOptionPane.showMessageDialog(mainWindow,
                            "<html>Net too Large for Memory.<br>Try Closing some of the Nets.</html>",
                            "Memory Error", JOptionPane.ERROR_MESSAGE);
                }
            }
        }
    });

    cancelSOM.addActionListener(new ActionListener() {
        public void actionPerformed(ActionEvent ae) {
            newName.setText("");
            somLatticeField.setText("");
            somMaxField.setText("");
            somMinField.setText("");
            sOMDialog.setVisible(false);
        }
    });

    //end of SOM creation
    mainWindow.setVisible(true);
}

From source file:src.gui.ItSIMPLE.java

/**
 * Creates the main content panel in the main analysis panel
 * @return //from  w  w  w  . j  a  va2s.  c o  m
 */
private JPanel getAnalysisMainContentPane() {

    JPanel anPanel = new JPanel(new BorderLayout());

    ItFramePanel mainContentPanel = new ItFramePanel(":: Analysis Techniques and Results",
            ItFramePanel.NO_MINIMIZE_MAXIMIZE);

    //Content of the FramePanel            
    JPanel resultsPanel = new JPanel(new BorderLayout());

    JToolBar analysisToolSetBar = new JToolBar();
    analysisToolSetBar.setRollover(true);

    JButton TorchlightButton = new JButton("TorchLight", new ImageIcon("resources/images/compare.png"));
    TorchlightButton.setToolTipText(
            "<html>Run TorchLight system. <br>TorchLight analyzes h+ search space topology without actually running any search</html>");
    TorchlightButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {

            new Thread() {
                public void run() {

                    ItTreeNode selectedNode = (ItTreeNode) projectAnalysisTree.getLastSelectedPathComponent();

                    if (selectedNode.getData() != null
                            && selectedNode.getData().getName().indexOf("problem") != -1) {
                        appendAnalysisOutputPanelText(
                                "(!) Know more about TorchLight at http://www.loria.fr/~hoffmanj/ \n");
                        appendAnalysisOutputPanelText(">> Calling TorchLight System... \n");
                        analysisStatusBar.setText("Status: Running Tourchlight ...");

                        String pddlVersion = pddlButtonsGroup.getSelection().getActionCommand();

                        //Call TorchLight
                        TorchLightAnalyzer.getTorchLightAnalysis(selectedNode, pddlVersion);

                        appendAnalysisOutputPanelText(">> TorchLight analysis done!'\n");
                        appendAnalysisOutputPanelText(" \n");
                        analysisStatusBar.setText("Status: Tourchlight analysis done!");
                    } else {
                        JOptionPane.showMessageDialog(ItSIMPLE.this,
                                "<html>Please chose a problem node at the 'Project Selection' tree. </html>");
                    }

                }
            }.start();

        }
    });
    analysisToolSetBar.add(TorchlightButton);

    //Results output
    outputAnalysisEditorPane = new JTextArea();
    //analysisInfoEditorPane.setContentType("text/html");
    outputAnalysisEditorPane.setEditable(false);
    outputAnalysisEditorPane.setLineWrap(true);
    outputAnalysisEditorPane.setWrapStyleWord(true);
    outputAnalysisEditorPane.setCursor(new Cursor(Cursor.TEXT_CURSOR));
    outputAnalysisEditorPane.setBackground(Color.WHITE);

    //analysisInfoEditorPane = new JEditorPane();
    //analysisInfoEditorPane.setContentType("text/html");
    //analysisInfoEditorPane.setEditable(false);
    //analysisInfoEditorPane.setCursor(new Cursor(Cursor.TEXT_CURSOR));
    //analysisInfoEditorPane.setBackground(Color.WHITE);                    

    resultsPanel.add(analysisToolSetBar, BorderLayout.NORTH);
    resultsPanel.add(new JScrollPane(outputAnalysisEditorPane), BorderLayout.CENTER);

    mainContentPanel.setContent(resultsPanel, false);
    //mainContentPanel.setParentSplitPane(petriEditorSplitPane);           
    anPanel.add(mainContentPanel, BorderLayout.CENTER);

    return anPanel;
}

From source file:src.gui.ItSIMPLE.java

private JToolBar getRationaleDatabaseToolBar() {

    JToolBar rationaleDatabaseToolBar = new JToolBar();
    rationaleDatabaseToolBar.setRollover(true);

    // create the buttons

    //select rationales from data base
    JButton searchButton = new JButton("Search", new ImageIcon("resources/images/searchdatabase.png"));
    searchButton.setToolTipText("Search rationales in the database");
    searchButton.addActionListener(new java.awt.event.ActionListener() {
        @Override/*  ww w . j ava2  s .com*/
        public void actionPerformed(ActionEvent e) {
            //RUN search plan from database
            searchRationaleInDatabaseAction.actionPerformed(e);
        }
    });
    rationaleDatabaseToolBar.add(searchButton);

    rationaleDatabaseToolBar.addSeparator();

    /*
    //insert new rationale into data base
    JButton addRationaleToDatabaseButton = new JButton("Add Plan",  new ImageIcon("resources/images/addplantodatabase.png"));
    addRationaleToDatabaseButton.setToolTipText("Add current plan to the database");
    addRationaleToDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
            @Override
            public void actionPerformed(ActionEvent e) {
                //RUN plan evaluation edit
                insertPlanIntoDatabaseAction.actionPerformed(e);
            }
    });
    rationaleDatabaseToolBar.add(addRationaleToDatabaseButton);
     */

    //edit rationale from database
    JButton editRatioanleFromDatabaseButton = new JButton("Edit Rationale",
            new ImageIcon("resources/images/editrationalefromdatabase.png"));
    editRatioanleFromDatabaseButton.setToolTipText("Edit selected rationale");
    editRatioanleFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN editing plan
            editRationaleFromDatabaseAction.actionPerformed(e);
        }
    });
    rationaleDatabaseToolBar.add(editRatioanleFromDatabaseButton);

    //delete rationale from database
    JButton deleteRationaleFromDatabaseButton = new JButton("Delete Rationale",
            new ImageIcon("resources/images/deleteplanfromdatabase.png"));
    deleteRationaleFromDatabaseButton.setToolTipText("Delete selected rationale");
    deleteRationaleFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN loading plan
            deleteRationaleFromDatabaseAction.actionPerformed(e);
        }
    });
    rationaleDatabaseToolBar.add(deleteRationaleFromDatabaseButton);

    rationaleDatabaseToolBar.addSeparator();

    //load reference plan from database
    JButton loadReferencePlanFromDatabaseButton = new JButton("Load Plan",
            new ImageIcon("resources/images/getfromdatabase.png"));
    loadReferencePlanFromDatabaseButton.setToolTipText("Load reference plan of the selected rationale");
    loadReferencePlanFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN editing plan
            loadReferencePlanFromDatabaseAction.actionPerformed(e);
        }
    });
    rationaleDatabaseToolBar.add(loadReferencePlanFromDatabaseButton);

    return rationaleDatabaseToolBar;
}

From source file:src.gui.ItSIMPLE.java

private JToolBar getPlanDatabaseToolBar() {

    JToolBar planDatabaseToolBar = new JToolBar();
    planDatabaseToolBar.setRollover(true);

    // create the buttons

    //select plans from data base

    JButton searchButton = new JButton("Search", new ImageIcon("resources/images/searchdatabase.png"));
    searchButton.setToolTipText("Search plans in the database");
    searchButton.addActionListener(new java.awt.event.ActionListener() {
        @Override/*from   www.  j  a v  a 2  s  .  c  o m*/
        public void actionPerformed(ActionEvent e) {
            //RUN search plan from database
            searchPlanInDatabaseAction.actionPerformed(e);
        }
    });
    planDatabaseToolBar.add(searchButton);

    final JButton filterButton = new JButton("Filter",
            new ImageIcon("resources/images/filtersearchdatabase.png"));
    filterButton
            .setToolTipText("Filter the search for plans in the database (use colunms of table 'plan' only)");
    filterButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //hide/show filter panel
            if (planFilterPanel.isVisible()) {
                planFilterPanel.setVisible(false);
                filterButton.setText("Filter");
            } else {
                planFilterPanel.setVisible(true);
                filterButton.setText("Don't filter");
            }
        }
    });
    planDatabaseToolBar.add(filterButton);

    planDatabaseToolBar.addSeparator();

    //insert plan into data base
    JButton addPlanToDatabaseButton = new JButton("Add Plan",
            new ImageIcon("resources/images/addplantodatabase.png"));
    addPlanToDatabaseButton.setToolTipText("Add current plan to the database");
    addPlanToDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN plan evaluation edit
            insertPlanIntoDatabaseAction.actionPerformed(e);
        }
    });
    planDatabaseToolBar.add(addPlanToDatabaseButton);

    //load plan from data base
    JButton loadPlanFromDatabaseButton = new JButton("Load Plan",
            new ImageIcon("resources/images/getfromdatabase.png"));
    loadPlanFromDatabaseButton.setToolTipText("Load selected plan into itSIMPLE");
    loadPlanFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN loading plan
            loadPlanFromDatabaseAction.actionPerformed(e);
        }
    });
    planDatabaseToolBar.add(loadPlanFromDatabaseButton);

    //delete plan from data base
    JButton deletePlanFromDatabaseButton = new JButton("Delete Plan",
            new ImageIcon("resources/images/deleteplanfromdatabase.png"));
    deletePlanFromDatabaseButton.setToolTipText("Delete selected plan");
    deletePlanFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN loading plan
            deletePlanFromDatabaseAction.actionPerformed(e);
        }
    });
    planDatabaseToolBar.add(deletePlanFromDatabaseButton);

    //update plan from data base
    JButton updatePlanFromDatabaseButton = new JButton("Update Plan",
            new ImageIcon("resources/images/updateplanfromdatabase.png"));
    updatePlanFromDatabaseButton.setToolTipText("Update current plan");
    updatePlanFromDatabaseButton.addActionListener(new java.awt.event.ActionListener() {
        @Override
        public void actionPerformed(ActionEvent e) {
            //RUN update plan
            updatePlanFromDatabaseAction.actionPerformed(e);
        }
    });
    planDatabaseToolBar.add(updatePlanFromDatabaseButton);

    return planDatabaseToolBar;
}