Example usage for javax.imageio ImageReader dispose

List of usage examples for javax.imageio ImageReader dispose

Introduction

In this page you can find the example usage for javax.imageio ImageReader dispose.

Prototype

public void dispose() 

Source Link

Document

Allows any resources held by this object to be released.

Usage

From source file:nl.b3p.viewer.image.ImageTool.java

/** Reads an image from an http input stream.
 *
 * @param method Apache HttpClient GetMethod object
 * @param mime String representing the mime type of the image.
 *
 * @return BufferedImage//from  w w w .ja  va2  s  . co m
 *
 * @throws Exception
 */
// <editor-fold defaultstate="" desc="readImage(GetMethod method, String mime) method.">
public static BufferedImage readImage(HttpMethod method, String mime) throws Exception {
    ImageReader ir = null;
    BufferedImage i = null;
    try {
        if (mime.indexOf(";") != -1) {
            mime = mime.substring(0, mime.indexOf(";"));
        }
        String mimeType = getMimeType(mime);

        /* TODO: Kijken waarom er geen mime type meer binnenkomt. Wellicht door de 
         * HttpClient vernieuwing in kaartenbalie ? */
        if (mimeType == null) {
            mimeType = "image/png";
        }

        if (mimeType == null) {
            log.error("Response from server not understood (mime = " + mime + "): "
                    + method.getResponseBodyAsString());
            throw new Exception("Response from server not understood (mime = " + mime + "): "
                    + method.getResponseBodyAsString());
        }

        ir = getReader(mimeType);
        if (ir == null) {
            log.error("no reader available for imageformat: "
                    + mimeType.substring(mimeType.lastIndexOf("/") + 1));
            throw new Exception("no reader available for imageformat: "
                    + mimeType.substring(mimeType.lastIndexOf("/") + 1));
        }
        //TODO Make smarter.. Possibly faster... But keep reporting!
        InputStream is = method.getResponseBodyAsStream();
        ByteArrayOutputStream baos = new ByteArrayOutputStream();
        int bytesRead = 0;
        byte[] buffer = new byte[2048];
        while (bytesRead != -1) {
            bytesRead = is.read(buffer, 0, buffer.length);
            if (bytesRead > 0) {
                baos.write(buffer, 0, bytesRead);
            }
        }
        ImageInputStream stream = ImageIO.createImageInputStream(new ByteArrayInputStream(baos.toByteArray()));
        ir.setInput(stream, true);
        i = ir.read(0);
        //if image is a png, has no alpha and has a tRNS then make that color transparent.
        if (!i.getColorModel().hasAlpha() && ir.getImageMetadata(0) instanceof PNGMetadata) {
            PNGMetadata metadata = (PNGMetadata) ir.getImageMetadata(0);
            if (metadata.tRNS_present) {
                int alphaPix = (metadata.tRNS_red << 16) | (metadata.tRNS_green << 8) | (metadata.tRNS_blue);
                BufferedImage tmp = new BufferedImage(i.getWidth(), i.getHeight(), BufferedImage.TYPE_INT_ARGB);
                for (int x = 0; x < i.getWidth(); x++) {
                    for (int y = 0; y < i.getHeight(); y++) {
                        int rgb = i.getRGB(x, y);
                        rgb = (rgb & 0xFFFFFF) == alphaPix ? alphaPix : rgb;
                        tmp.setRGB(x, y, rgb);
                    }
                }
                i = tmp;
            }
        }
    } finally {
        if (ir != null) {
            ir.dispose();
        }
    }
    return i;
}

From source file:org.geotools.gce.imagemosaic.GranuleDescriptor.java

GranuleOverviewLevelDescriptor getLevel(final int index) {

    //load level/* w  w  w. j  a  v  a2  s. c  o m*/
    // create the base grid to world transformation
    ImageInputStream inStream = null;
    ImageReader reader = null;
    try {

        // get a stream
        assert cachedStreamSPI != null : "no cachedStreamSPI available!";
        inStream = cachedStreamSPI.createInputStreamInstance(granuleUrl, ImageIO.getUseCache(),
                ImageIO.getCacheDirectory());
        if (inStream == null)
            throw new IllegalArgumentException("Unable to create an inputstream for the granuleurl:"
                    + (granuleUrl != null ? granuleUrl : "null"));

        // get a reader and try to cache the relevant SPI
        if (cachedReaderSPI == null) {
            reader = ImageIOExt.getImageioReader(inStream);
            if (reader != null)
                cachedReaderSPI = reader.getOriginatingProvider();
        } else
            reader = cachedReaderSPI.createReaderInstance();
        if (reader == null)
            throw new IllegalArgumentException(
                    "Unable to get an ImageReader for the provided file " + granuleUrl.toString());
        final boolean ignoreMetadata = customizeReaderInitialization(reader, null);
        reader.setInput(inStream, false, ignoreMetadata);

        // call internal method which will close everything
        return getLevel(index, reader);

    } catch (IllegalStateException e) {

        // clean up
        try {
            if (inStream != null)
                inStream.close();
        } catch (Throwable ee) {

        } finally {
            if (reader != null)
                reader.dispose();
        }

        throw new IllegalArgumentException(e);

    } catch (IOException e) {

        // clean up
        try {
            if (inStream != null)
                inStream.close();
        } catch (Throwable ee) {
        } finally {
            if (reader != null)
                reader.dispose();
        }

        throw new IllegalArgumentException(e);
    }
}

From source file:org.geotools.utils.imageoverviews.OverviewsEmbedder.java

public void run() {
    // did we create a local private tile cache or not?
    boolean localTileCache = false;
    ////from  w w w . j a v  a 2  s . c om
    // creating the image to use for the successive
    // subsampling
    //
    TileCache baseTC = JAI.getDefaultInstance().getTileCache();

    if (baseTC == null) {
        localTileCache = true;
        final long tilecacheSize = super.getTileCacheSize();
        baseTC = JAI.createTileCache();
        baseTC.setMemoryCapacity(tilecacheSize);
        baseTC.setMemoryThreshold(0.75f);
    }

    //
    // CHECK INPUT DIRECTORIES/FILES
    //
    if (sourcePath == null) {
        fireEvent("Provided sourcePath is null", overallProgress);
        return;
    }
    // getting an image input stream to the file
    final File file = new File(sourcePath);
    final File[] files;
    int numFiles = 1;
    StringBuilder message;
    if (!file.canRead() || !file.exists()) {
        fireEvent("Provided file " + file.getAbsolutePath() + " cannot be read or does not exist", 100);
        return;
    }
    if (file.isDirectory()) {
        if (wildcardString == null) {
            fireEvent("Provided wildcardString is null", 100);
            return;
        }
        final FileFilter fileFilter = new WildcardFileFilter(wildcardString);
        files = file.listFiles(fileFilter);
        numFiles = files.length;
        if (numFiles <= 0) {
            message = new StringBuilder("No files to process!");
            if (LOGGER.isLoggable(Level.FINE)) {
                LOGGER.fine(message.toString());
            }
            fireEvent(message.toString(), 100);

        }

    } else
        files = new File[] { file };

    if (files == null || files.length == 0) {
        fireEvent("Unable to find input files for the provided wildcard " + wildcardString + " and input path "
                + sourcePath, 100);
        return;
    }
    // setting step
    overallProgressStep = 100 * 1.0 / numFiles;

    //
    // ADDING OVERVIEWS TO ALL FOUND FILES
    //
    for (fileBeingProcessed = 0; fileBeingProcessed < numFiles; fileBeingProcessed++) {

        message = new StringBuilder("Managing file  ").append(fileBeingProcessed).append(" of ")
                .append(files[fileBeingProcessed]).append(" files");
        if (LOGGER.isLoggable(Level.FINE)) {
            LOGGER.fine(message.toString());
        }

        overallProgress = overallProgressStep * fileBeingProcessed;
        fireEvent(message.toString(), overallProgress);

        if (getStopThread()) {
            message = new StringBuilder("Stopping requested at file  ").append(fileBeingProcessed)
                    .append(" of ").append(numFiles).append(" files");
            if (LOGGER.isLoggable(Level.FINE)) {
                LOGGER.fine(message.toString());
            }
            fireEvent(message.toString(), overallProgress);
            return;
        }

        ImageInputStream stream = null;
        ImageWriter writer = null;
        ImageOutputStream streamOut = null;
        RenderedOp currentImage = null;
        RenderedOp newImage = null;
        try {

            File localFile = files[fileBeingProcessed];

            //
            // get a stream
            //
            stream = ImageIO.createImageInputStream(localFile);
            if (stream == null) {

                message = new StringBuilder("Unable to create an input stream for file")
                        .append(files[fileBeingProcessed]);
                if (LOGGER.isLoggable(Level.SEVERE)) {
                    LOGGER.severe(message.toString());
                }
                fireEvent(message.toString(), overallProgress);
                break;
            }
            stream.mark();

            //
            // get a reader
            //
            final Iterator<ImageReader> it = ImageIO.getImageReaders(stream);
            if (!it.hasNext()) {
                message = new StringBuilder("Unable to find a reader for file")
                        .append(files[fileBeingProcessed]);
                if (LOGGER.isLoggable(Level.SEVERE)) {
                    LOGGER.severe(message.toString());
                }
                fireEvent(message.toString(), overallProgress);
                break;
            }
            final ImageReader reader = (ImageReader) it.next();
            stream.reset();
            stream.mark();
            // is it a geotiff reader or not?
            if (!reader.getFormatName().toLowerCase().startsWith("tif")) {
                if (LOGGER.isLoggable(Level.INFO)) {
                    LOGGER.info("Discarding input file " + files[fileBeingProcessed]
                            + " since it is not a proper tif file.");
                }
                continue;
            }

            //
            // set input
            //
            reader.setInput(stream);
            ImageLayout layout = null;
            // tiling the image if needed
            int actualTileW = reader.getTileWidth(0);
            int actualTileH = reader.getTileHeight(0);
            if (!reader.isImageTiled(0) || (reader.isImageTiled(0) && (actualTileH != tileH && tileH != -1)
                    || (actualTileW != tileW && tileW != -1))) {

                message = new StringBuilder("Retiling image  ").append(fileBeingProcessed);
                if (LOGGER.isLoggable(Level.FINE)) {
                    LOGGER.fine(message.toString());
                }
                fireEvent(message.toString(), overallProgress);
                layout = Utils.createTiledLayout(tileW, tileH, 0, 0);
            }
            stream.reset();
            reader.reset();
            reader.dispose();

            //
            // output image stream
            //
            if (externalOverviews) {
                // create a sibling file
                localFile = new File(localFile.getParent(),
                        FilenameUtils.getBaseName(localFile.getAbsolutePath()) + ".tif.ovr");
            }
            streamOut = ImageIOExt.createImageOutputStream(null, localFile);
            if (streamOut == null) {
                message = new StringBuilder("Unable to acquire an ImageOutputStream for the file ")
                        .append(files[fileBeingProcessed].toString());
                if (LOGGER.isLoggable(Level.SEVERE)) {
                    LOGGER.severe(message.toString());
                }
                fireEvent(message.toString(), 100);
                break;
            }

            //
            // Preparing to write the set of images. First of all I write
            // the first image `
            //
            // getting a writer for this reader
            writer = TIFF_IMAGE_WRITER_SPI.createWriterInstance();
            writer.setOutput(streamOut);
            writer.addIIOWriteProgressListener(writeProgressListener);
            writer.addIIOWriteWarningListener(writeProgressListener);
            ImageWriteParam param = writer.getDefaultWriteParam();

            //
            // setting tiling on the first image using writing parameters
            //
            if (tileH != -1 & tileW != -1) {
                param.setTilingMode(ImageWriteParam.MODE_EXPLICIT);
                param.setTiling(tileW, tileH, 0, 0);

            } else {
                param.setTilingMode(ImageWriteParam.MODE_EXPLICIT);
                param.setTiling(actualTileW, actualTileH, 0, 0);
            }
            if (this.compressionScheme != null && !Double.isNaN(compressionRatio)) {
                param.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);
                param.setCompressionType(compressionScheme);
                param.setCompressionQuality((float) this.compressionRatio);
            }

            final RenderingHints newHints = new RenderingHints(JAI.KEY_IMAGE_LAYOUT, layout);
            newHints.add(new RenderingHints(JAI.KEY_TILE_CACHE, baseTC));

            // read base image
            ParameterBlock pbjRead = new ParameterBlock();
            pbjRead.add(stream);
            pbjRead.add(Integer.valueOf(0));
            pbjRead.add(Boolean.FALSE);
            pbjRead.add(Boolean.FALSE);
            pbjRead.add(Boolean.FALSE);
            pbjRead.add(null);
            pbjRead.add(null);
            pbjRead.add(null);
            pbjRead.add(null);
            currentImage = JAI.create("ImageRead", pbjRead, newHints);
            message = new StringBuilder("Read original image  ").append(fileBeingProcessed);
            if (LOGGER.isLoggable(Level.FINE)) {
                LOGGER.fine(message.toString());
            }
            fireEvent(message.toString(), overallProgress);
            int i = 0;
            //
            // OVERVIEWS CYLE
            //
            for (overviewInProcess = 0; overviewInProcess < numSteps; overviewInProcess++) {

                message = new StringBuilder("Subsampling step ").append(overviewInProcess + 1)
                        .append(" of image  ").append(fileBeingProcessed);
                if (LOGGER.isLoggable(Level.FINE)) {
                    LOGGER.fine(message.toString());
                }
                fireEvent(message.toString(), overallProgress);

                // paranoiac check
                if (currentImage.getWidth() / downsampleStep <= 0
                        || currentImage.getHeight() / downsampleStep <= 0)
                    break;

                // SCALE

                // subsampling the input image using the chosen algorithm
                final SubsampleAlgorithm algorithm = SubsampleAlgorithm.valueOf(scaleAlgorithm);
                switch (algorithm) {
                case Average:
                    newImage = Utils.scaleAverage(currentImage, baseTC, downsampleStep, borderExtender);
                    break;
                case Filtered:
                    newImage = Utils.filteredSubsample(currentImage, baseTC, downsampleStep, lowPassFilter);
                    break;
                case Bilinear:
                    newImage = Utils.subsample(currentImage, baseTC, new InterpolationBilinear(),
                            downsampleStep, borderExtender);
                    break;
                case Bicubic:
                    newImage = Utils.subsample(currentImage, baseTC, new InterpolationBicubic(2),
                            downsampleStep, borderExtender);
                    break;
                case Nearest:
                    newImage = Utils.subsample(currentImage, baseTC, new InterpolationNearest(), downsampleStep,
                            borderExtender);
                    break;
                default:
                    throw new IllegalArgumentException("Invalid scaling algorithm " + scaleAlgorithm);//cannot get here

                }

                //set relevant metadata
                IIOMetadata imageMetadata = null;
                if (writer instanceof TIFFImageWriter) {
                    imageMetadata = writer.getDefaultImageMetadata(new ImageTypeSpecifier(newImage), param);
                    if (imageMetadata != null)
                        ((TIFFImageMetadata) imageMetadata).addShortOrLongField(
                                BaselineTIFFTagSet.TAG_NEW_SUBFILE_TYPE,
                                BaselineTIFFTagSet.NEW_SUBFILE_TYPE_REDUCED_RESOLUTION);
                }
                // write out
                if (!externalOverviews || i > 0)
                    writer.writeInsert(-1, new IIOImage(newImage, null, imageMetadata), param);
                else
                    writer.write(null, new IIOImage(newImage, null, imageMetadata), param);
                message = new StringBuilder("Step ").append(overviewInProcess + 1).append(" of image  ")
                        .append(fileBeingProcessed).append(" done!");
                if (LOGGER.isLoggable(Level.FINE)) {
                    LOGGER.fine(message.toString());
                }
                fireEvent(message.toString(), overallProgress);

                // switching images
                currentImage.dispose(); //dispose old image
                currentImage = newImage;

                i++;

            }

            overallProgress = 100;
            // close message
            message = new StringBuilder("Done with  image  ").append(fileBeingProcessed);
            if (LOGGER.isLoggable(Level.FINE)) {
                LOGGER.fine(message.toString());
            }
            fireEvent(message.toString(), overallProgress);
        } catch (Throwable e) {
            fireException(e);
        } finally {
            // clean up

            // clean caches if they are local
            if (localTileCache && baseTC != null)
                try {
                    baseTC.flush();
                } catch (Exception e) {
                }

            //
            // free everything
            try {
                if (streamOut != null)
                    streamOut.close();
            } catch (Throwable e) {
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
            }

            try {
                if (writer != null)
                    writer.dispose();
            } catch (Throwable e) {
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
            }

            try {
                if (currentImage != null)
                    currentImage.dispose();
            } catch (Throwable e) {
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
            }

            try {
                if (newImage != null)
                    newImage.dispose();
            } catch (Throwable e) {
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
            }

            try {
                if (stream != null)
                    stream.close();

            } catch (Throwable e) {
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.log(Level.FINE, e.getLocalizedMessage(), e);
            }
        }
    }

    if (LOGGER.isLoggable(Level.FINE))
        LOGGER.fine("Done!!!");

}

From source file:org.apache.carbondata.sdk.file.ImageTest.java

public void binaryToCarbonWithHWD(String sourceImageFolder, String outputPath, String preDestPath,
        String sufAnnotation, final String sufImage, int numToWrite) throws Exception {
    int num = 1;//from   ww w  .  j a  va 2  s .  c  o m
    Field[] fields = new Field[7];
    fields[0] = new Field("height", DataTypes.INT);
    fields[1] = new Field("width", DataTypes.INT);
    fields[2] = new Field("depth", DataTypes.INT);
    fields[3] = new Field("binaryName", DataTypes.STRING);
    fields[4] = new Field("binary", DataTypes.BINARY);
    fields[5] = new Field("labelName", DataTypes.STRING);
    fields[6] = new Field("labelContent", DataTypes.STRING);

    byte[] originBinary = null;

    // read and write image data
    for (int j = 0; j < num; j++) {

        Object[] files = listFiles(sourceImageFolder, sufImage).toArray();

        int index = 0;

        if (null != files) {
            CarbonWriter writer = CarbonWriter.builder().outputPath(outputPath).withCsvInput(new Schema(fields))
                    .withBlockSize(256).writtenBy("SDKS3Example").withPageSizeInMb(1).build();

            for (int i = 0; i < files.length; i++) {
                if (0 == index % numToWrite) {
                    writer.close();
                    writer = CarbonWriter.builder().outputPath(outputPath).withCsvInput(new Schema(fields))
                            .withBlockSize(256).writtenBy("SDKS3Example").withPageSizeInMb(1).build();
                }
                index++;

                // read image and encode to Hex
                File file = new File((String) files[i]);
                System.out.println(file.getCanonicalPath());
                BufferedInputStream bis = new BufferedInputStream(new FileInputStream(file));
                int depth = 0;
                boolean isGray;
                boolean hasAlpha;
                BufferedImage bufferedImage = null;
                try {
                    bufferedImage = ImageIO.read(file);
                    isGray = bufferedImage.getColorModel().getColorSpace().getType() == ColorSpace.TYPE_GRAY;
                    hasAlpha = bufferedImage.getColorModel().hasAlpha();

                    if (isGray) {
                        depth = 1;
                    } else if (hasAlpha) {
                        depth = 4;
                    } else {
                        depth = 3;
                    }

                } catch (Exception e) {
                    e.printStackTrace();
                    System.out.println(i);
                    ImageInputStream stream = new FileImageInputStream(new File(file.getCanonicalPath()));
                    Iterator<ImageReader> iter = ImageIO.getImageReaders(stream);

                    Exception lastException = null;
                    while (iter.hasNext()) {
                        ImageReader reader = null;
                        try {
                            reader = (ImageReader) iter.next();
                            ImageReadParam param = reader.getDefaultReadParam();
                            reader.setInput(stream, true, true);
                            Iterator<ImageTypeSpecifier> imageTypes = reader.getImageTypes(0);

                            while (imageTypes.hasNext()) {
                                ImageTypeSpecifier imageTypeSpecifier = imageTypes.next();
                                System.out
                                        .println(imageTypeSpecifier.getColorModel().getColorSpace().getType());
                                int bufferedImageType = imageTypeSpecifier.getBufferedImageType();
                                if (bufferedImageType == BufferedImage.TYPE_BYTE_GRAY) {
                                    param.setDestinationType(imageTypeSpecifier);
                                    break;
                                }
                            }
                            bufferedImage = reader.read(0, param);
                            isGray = bufferedImage.getColorModel().getColorSpace()
                                    .getType() == ColorSpace.TYPE_GRAY;
                            hasAlpha = bufferedImage.getColorModel().hasAlpha();

                            if (isGray) {
                                depth = 1;
                            } else if (hasAlpha) {
                                depth = 4;
                            } else {
                                depth = 3;
                            }
                            if (null != bufferedImage)
                                break;
                        } catch (Exception e2) {
                            lastException = e2;
                        } finally {
                            if (null != reader)
                                reader.dispose();
                        }
                    }
                    // If you don't have an image at the end of all readers
                    if (null == bufferedImage) {
                        if (null != lastException) {
                            throw lastException;
                        }
                    }
                } finally {
                    originBinary = new byte[bis.available()];
                    while ((bis.read(originBinary)) != -1) {
                    }

                    String txtFileName = file.getCanonicalPath().split(sufImage)[0] + sufAnnotation;
                    BufferedInputStream txtBis = new BufferedInputStream(new FileInputStream(txtFileName));
                    String txtValue = null;
                    byte[] txtBinary = null;
                    txtBinary = new byte[txtBis.available()];
                    while ((txtBis.read(txtBinary)) != -1) {
                        txtValue = new String(txtBinary, "UTF-8");
                    }
                    // write data
                    writer.write(new Object[] { bufferedImage.getHeight(), bufferedImage.getWidth(), depth,
                            file.getCanonicalPath(), originBinary, txtFileName, txtValue.replace("\n", "") });
                    bis.close();
                }
            }
            writer.close();
        }
    }

    CarbonReader reader = CarbonReader.builder(outputPath).build();

    System.out.println("\nData:");
    int i = 0;
    while (i < 20 && reader.hasNext()) {
        Object[] row = (Object[]) reader.readNextRow();

        byte[] outputBinary = (byte[]) row[1];
        System.out.println(row[2] + " " + row[3] + " " + row[4] + " " + row[5] + " image size:"
                + outputBinary.length + " " + row[0]);

        // save image, user can compare the save image and original image
        String destString = preDestPath + i + sufImage;
        BufferedOutputStream bos = new BufferedOutputStream(new FileOutputStream(destString));
        bos.write(outputBinary);
        bos.close();
        i++;
    }
    System.out.println("\nFinished");
    reader.close();
}

From source file:org.apache.xmlgraphics.image.loader.impl.imageio.ImageLoaderImageIO.java

/** {@inheritDoc} */
public Image loadImage(ImageInfo info, Map hints, ImageSessionContext session)
        throws ImageException, IOException {
    RenderedImage imageData = null;
    IIOException firstException = null;

    IIOMetadata iiometa = (IIOMetadata) info.getCustomObjects().get(ImageIOUtil.IMAGEIO_METADATA);
    boolean ignoreMetadata = (iiometa != null);
    boolean providerIgnoresICC = false;

    Source src = session.needSource(info.getOriginalURI());
    ImageInputStream imgStream = ImageUtil.needImageInputStream(src);
    try {/*from   ww w.j av a2 s . c  o  m*/
        Iterator iter = ImageIO.getImageReaders(imgStream);
        while (iter.hasNext()) {
            ImageReader reader = (ImageReader) iter.next();
            try {
                imgStream.mark();
                ImageReadParam param = reader.getDefaultReadParam();
                reader.setInput(imgStream, false, ignoreMetadata);
                final int pageIndex = ImageUtil.needPageIndexFromURI(info.getOriginalURI());
                try {
                    if (ImageFlavor.BUFFERED_IMAGE.equals(this.targetFlavor)) {
                        imageData = reader.read(pageIndex, param);
                    } else {
                        imageData = reader.read(pageIndex, param);
                        //imageData = reader.readAsRenderedImage(pageIndex, param);
                        //TODO Reenable the above when proper listeners are implemented
                        //to react to late pixel population (so the stream can be closed
                        //properly).
                    }
                    if (iiometa == null) {
                        iiometa = reader.getImageMetadata(pageIndex);
                    }
                    providerIgnoresICC = checkProviderIgnoresICC(reader.getOriginatingProvider());
                    break; //Quit early, we have the image
                } catch (IndexOutOfBoundsException indexe) {
                    throw new ImageException("Page does not exist. Invalid image index: " + pageIndex);
                } catch (IllegalArgumentException iae) {
                    //Some codecs like com.sun.imageio.plugins.wbmp.WBMPImageReader throw
                    //IllegalArgumentExceptions when they have trouble parsing the image.
                    throw new ImageException("Error loading image using ImageIO codec", iae);
                } catch (IIOException iioe) {
                    if (firstException == null) {
                        firstException = iioe;
                    } else {
                        log.debug("non-first error loading image: " + iioe.getMessage());
                    }
                }
                try {
                    //Try fallback for CMYK images
                    BufferedImage bi = getFallbackBufferedImage(reader, pageIndex, param);
                    imageData = bi;
                    firstException = null; //Clear exception after successful fallback attempt
                    break;
                } catch (IIOException iioe) {
                    //ignore
                }
                imgStream.reset();
            } finally {
                reader.dispose();
            }
        }
    } finally {
        ImageUtil.closeQuietly(src);
        //TODO Some codecs may do late reading.
    }
    if (firstException != null) {
        throw new ImageException("Error while loading image: " + firstException.getMessage(), firstException);
    }
    if (imageData == null) {
        throw new ImageException("No ImageIO ImageReader found .");
    }

    ColorModel cm = imageData.getColorModel();

    Color transparentColor = null;
    if (cm instanceof IndexColorModel) {
        //transparent color will be extracted later from the image
    } else {
        if (providerIgnoresICC && cm instanceof ComponentColorModel) {
            // Apply ICC Profile to Image by creating a new image with a new
            // color model.
            ICC_Profile iccProf = tryToExctractICCProfile(iiometa);
            if (iccProf != null) {
                ColorModel cm2 = new ComponentColorModel(new ICC_ColorSpace(iccProf), cm.hasAlpha(),
                        cm.isAlphaPremultiplied(), cm.getTransparency(), cm.getTransferType());
                WritableRaster wr = Raster.createWritableRaster(imageData.getSampleModel(), null);
                imageData.copyData(wr);
                BufferedImage bi = new BufferedImage(cm2, wr, cm2.isAlphaPremultiplied(), null);
                imageData = bi;
                cm = cm2;
            }
        }
        // ImageIOUtil.dumpMetadataToSystemOut(iiometa);
        // Retrieve the transparent color from the metadata
        if (iiometa != null && iiometa.isStandardMetadataFormatSupported()) {
            Element metanode = (Element) iiometa.getAsTree(IIOMetadataFormatImpl.standardMetadataFormatName);
            Element dim = ImageIOUtil.getChild(metanode, "Transparency");
            if (dim != null) {
                Element child;
                child = ImageIOUtil.getChild(dim, "TransparentColor");
                if (child != null) {
                    String value = child.getAttribute("value");
                    if (value == null || value.length() == 0) {
                        //ignore
                    } else if (cm.getNumColorComponents() == 1) {
                        int gray = Integer.parseInt(value);
                        transparentColor = new Color(gray, gray, gray);
                    } else {
                        StringTokenizer st = new StringTokenizer(value);
                        transparentColor = new Color(Integer.parseInt(st.nextToken()),
                                Integer.parseInt(st.nextToken()), Integer.parseInt(st.nextToken()));
                    }
                }
            }
        }
    }

    if (ImageFlavor.BUFFERED_IMAGE.equals(this.targetFlavor)) {
        return new ImageBuffered(info, (BufferedImage) imageData, transparentColor);
    } else {
        return new ImageRendered(info, imageData, transparentColor);
    }
}

From source file:net.filterlogic.util.imaging.ToTIFF.java

/**
 * Convert multipage TIFF to single page TIFF.
 * @param srcFiles Array of source files to convert.
 * @param destPath Folder to store single page TIFFs in.
 * @param archivePath Path to move source TIFF files to after single page TIFFs created.
 * @param pattern Pattern of single page TIFF file names.  Java NumberFormatter used with page number to create file name.
 * @param multipage Set to true if source TIFFs should be coverted to multi-page TIFF.
 * @param dpi DPI to set TIFFs to./*w w  w  . j a  v a 2 s  .com*/
 * @return Returns a list of files in destination path.
 * @throws net.filterlogic.util.imaging.OpenCaptureImagingException
 */
public static List toTIFF(String[] srcFiles, String destPath, String archivePath, String pattern,
        boolean multipage, int dpi) throws OpenCaptureImagingException {
    String pathSep = System.getProperty("file.separator");
    boolean jaiSupport = true;

    int pageCount = 0;
    int fileNameCount = 0;

    byte[] imageData = null;

    // make sure destpath has trailing slash.
    if (destPath.lastIndexOf(pathSep) != destPath.length() - 1)
        destPath += pathSep;

    // create path if doesn't exist
    if (!Path.ValidatePath(destPath))
        if (!Path.createPath(destPath))
            throw new OpenCaptureImagingException(
                    "Unable to create destination path for imported images [" + destPath + "]");

    // make sure archivePath has trailing slash
    if (archivePath.lastIndexOf(pathSep) != archivePath.length() - 1)
        archivePath += pathSep;

    if (!Path.ValidatePath(archivePath))
        if (!Path.createPath(archivePath))
            throw new OpenCaptureImagingException(
                    "Unable to create archive path for imported images [" + archivePath + "]");

    // set a default pattern if one not passed.
    if (pattern.trim().length() < 1)
        pattern = "#";

    NumberFormat formatter = new DecimalFormat(pattern);

    ArrayList<String> list = new ArrayList<String>();

    for (int i = 0; i < srcFiles.length; i++) {
        try {

            File f = new File(srcFiles[i]);
            imageData = null;

            ImageIO.setUseCache(false);
            ImageInputStream imageInputStream = ImageIO.createImageInputStream(f);
            java.util.Iterator readers = ImageIO.getImageReaders(imageInputStream);

            ImageReader reader1 = null;

            if (readers.hasNext()) {
                reader1 = (ImageReader) readers.next();
                jaiSupport = true;
            } else
                jaiSupport = false;

            if (jaiSupport) {
                //ImageInputStream iis = ImageIO.createImageInputStream(new FileInputStream(f));
                reader1.setInput(imageInputStream);

                pageCount = reader1.getNumImages(true);
            } else {
                String newFileName = bigEndian2LittleEndian(f.getAbsolutePath());

                if (imageInputStream != null) {
                    imageInputStream.flush();
                    imageInputStream.close();

                    reader1.setInput(imageInputStream);
                    pageCount = reader1.getNumImages(true);

                }

                imageInputStream = ImageIO.createImageInputStream(new File(newFileName));

                readers = ImageIO.getImageReaders(imageInputStream);

            }
            //                Iterator writers = ImageIO.getImageWritersByFormatName("tiff");
            //                ImageWriter writer = (ImageWriter)writers.next();

            //ImageWriteParam param = writer.getDefaultWriteParam();

            //param.setCompressionMode(ImageWriteParam.MODE_EXPLICIT);

            //String[] legalTypes = param.getCompressionTypes();

            //param.setCompressionType("PackBits");

            //ByteArrayOutputStream byteOut = new ByteArrayOutputStream();
            ImageOutputStream ios = null;
            BufferedImage img = null;

            // break out each page to single file
            for (int t = 0; t < pageCount; t++) {

                // format filenumber
                String tifName = destPath + formatter.format(fileNameCount) + ".tif";

                while (new File(tifName).exists()) {
                    tifName = destPath + formatter.format(++fileNameCount) + ".tif";
                }

                FileOutputStream file = new FileOutputStream(new File(tifName));

                if (jaiSupport) {
                    img = reader1.read(t);
                    IIOImage iioimg = reader1.readAll(t, null);
                    //ios = ImageIO.createImageOutputStream(file);
                    //IIOMetadata iiom = getMetadata(writer, img, null, 200);
                } else {
                    img = loadTIFF(imageData, t);
                }
                TIFFEncodeParam tep = setEncoder(TIFFEncodeParam.COMPRESSION_PACKBITS, 200);

                ImageEncoder encoder = ImageCodec.createImageEncoder("TIFF", file, tep);

                encoder.encode(img);
                //boolean ok = ImageIO.write(img, "tiff", ios);
                //writer.setOutput(ios);
                //writer.write(iiom, iioimg, null);

                img.flush();

                //ios.flush();
                //ios.close();
                // ios = null;
                //iioimg = null;
                //iiom = null;
                img = null;
                //writer.dispose();
                //byteOut.flush();
                file.close();

                file = null;

                //System.out.println("Add file!");

                list.add(tifName);
            }

            if (jaiSupport) {
                reader1.dispose();
            }

            readers = null;

            //                writer.dispose();
            //                writers = null;

            imageInputStream.flush();
            imageInputStream.close();
            imageInputStream = null;

            f = null;

            // move file with overwrite
            if (!net.filterlogic.io.FileAccess.Move(srcFiles[i], archivePath, true))
                throw new Exception("Unable to move input file to archive path [" + srcFiles[i] + "] to ["
                        + archivePath + "]");

        } catch (Exception e) {
            throw new OpenCaptureImagingException(e.toString());
        }
    }

    return list;
}

From source file:org.geotools.utils.imagemosaic.MosaicIndexBuilder.java

/**
 * Main thread for the mosaic index builder.
 *//* w  ww.j  av  a2  s.  c  om*/
public void run() {

    // /////////////////////////////////////////////////////////////////////
    //
    // CREATING INDEX FILE
    //
    // /////////////////////////////////////////////////////////////////////

    // /////////////////////////////////////////////////////////////////////
    //
    // Create a file handler that write log record to a file called
    // my.log
    //
    // /////////////////////////////////////////////////////////////////////
    FileHandler handler = null;
    try {
        boolean append = true;
        handler = new FileHandler(new StringBuffer(locationPath).append("/error.txt").toString(), append);
        handler.setLevel(Level.SEVERE);
        // Add to the desired logger
        LOGGER.addHandler(handler);

        // /////////////////////////////////////////////////////////////////////
        //
        // Create a set of file names that have to be skipped since these are
        // our metadata files
        //
        // /////////////////////////////////////////////////////////////////////
        final Set<String> skipFiles = new HashSet<String>(
                Arrays.asList(new String[] { indexName + ".shp", indexName + ".dbf", indexName + ".shx",
                        indexName + ".prj", "error.txt", "error.txt.lck", indexName + ".properties" }));

        // /////////////////////////////////////////////////////////////////////
        //
        // Creating temp vars
        //
        // /////////////////////////////////////////////////////////////////////
        ShapefileDataStore index = null;
        Transaction t = new DefaultTransaction();
        // declaring a preciosion model to adhere the java double type
        // precision
        PrecisionModel precMod = new PrecisionModel(PrecisionModel.FLOATING);
        GeometryFactory geomFactory = new GeometryFactory(precMod);
        try {
            index = new ShapefileDataStore(
                    new File(locationPath + File.separator + indexName + ".shp").toURI().toURL());
        } catch (MalformedURLException ex) {
            if (LOGGER.isLoggable(Level.SEVERE))
                LOGGER.log(Level.SEVERE, ex.getLocalizedMessage(), ex);
            fireException(ex);
            return;
        }

        final List<File> files = new ArrayList<File>();
        recurse(files, locationPath);

        // /////////////////////////////////////////////////////////////////////
        //
        // Cycling over the files that have filtered out
        //
        // /////////////////////////////////////////////////////////////////////
        numFiles = files.size();
        String validFileName = null;
        final Iterator<File> filesIt = files.iterator();
        FeatureWriter<SimpleFeatureType, SimpleFeature> fw = null;
        boolean doneSomething = false;
        for (int i = 0; i < numFiles; i++) {

            StringBuffer message;
            // //
            //
            // Check that this file is actually good to go
            //
            // //         
            final File fileBeingProcessed = ((File) filesIt.next());
            if (!fileBeingProcessed.exists() || !fileBeingProcessed.canRead() || !fileBeingProcessed.isFile()) {
                // send a message
                message = new StringBuffer("Skipped file ").append(files.get(i))
                        .append(" snce it seems invalid.");
                if (LOGGER.isLoggable(Level.INFO))
                    LOGGER.info(message.toString());
                fireEvent(message.toString(), ((i * 99.0) / numFiles));
                continue;
            }

            // //
            //
            // Anyone has asked us to stop?
            //
            // //
            if (getStopThread()) {
                message = new StringBuffer("Stopping requested at file  ").append(i).append(" of ")
                        .append(numFiles).append(" files");
                if (LOGGER.isLoggable(Level.FINE)) {
                    LOGGER.fine(message.toString());
                }
                fireEvent(message.toString(), ((i * 100.0) / numFiles));
                return;
            } // replacing chars on input path
            try {
                validFileName = fileBeingProcessed.getCanonicalPath();
            } catch (IOException e1) {
                fireException(e1);
                return;
            }
            validFileName = validFileName.replace('\\', '/');
            validFileName = validFileName.substring(locationPath.length() + 1,
                    fileBeingProcessed.getAbsolutePath().length());
            if (skipFiles.contains(validFileName))
                continue;
            message = new StringBuffer("Now indexing file ").append(validFileName);

            if (LOGGER.isLoggable(Level.FINE)) {
                LOGGER.fine(message.toString());
            }
            fireEvent(message.toString(), ((i * 100.0) / numFiles));
            try {
                // ////////////////////////////////////////////////////////
                //
                //
                // STEP 1
                // Getting an ImageIO reader for this coverage.
                //
                //
                // ////////////////////////////////////////////////////////
                ImageInputStream inStream = ImageIO.createImageInputStream(fileBeingProcessed);
                if (inStream == null) {
                    if (LOGGER.isLoggable(Level.SEVERE))
                        LOGGER.severe(fileBeingProcessed
                                + " has been skipped since we could not get a stream for it");
                    continue;
                }
                inStream.mark();
                final Iterator<ImageReader> it = ImageIO.getImageReaders(inStream);
                ImageReader r = null;
                if (it.hasNext()) {
                    r = (ImageReader) it.next();
                    r.setInput(inStream);
                } else {
                    // release resources
                    try {
                        inStream.close();
                    } catch (Exception e) {
                        // ignore exception
                    }
                    //               try {
                    //                  r.dispose();
                    //               } catch (Exception e) {
                    //                  // ignore exception
                    //               }

                    // send a message
                    message = new StringBuffer("Skipped file ").append(files.get(i))
                            .append(":No ImageIO readeres avalaible.");
                    if (LOGGER.isLoggable(Level.INFO))
                        LOGGER.info(message.toString());
                    fireEvent(message.toString(), ((i * 99.0) / numFiles));
                    continue;
                }

                // ////////////////////////////////////////////////////////
                //
                // STEP 2
                // Getting a coverage reader for this coverage.
                //
                // ////////////////////////////////////////////////////////
                if (LOGGER.isLoggable(Level.FINE))
                    LOGGER.fine(new StringBuffer("Getting a reader").toString());
                final AbstractGridFormat format = (AbstractGridFormat) GridFormatFinder
                        .findFormat(files.get(i));
                if (format == null || !format.accepts(files.get(i))) {
                    // release resources
                    try {
                        inStream.close();
                    } catch (Exception e) {
                        // ignore exception
                    }
                    try {
                        r.dispose();
                    } catch (Exception e) {
                        // ignore exception
                    }

                    message = new StringBuffer("Skipped file ").append(files.get(i))
                            .append(": File format is not supported.");
                    if (LOGGER.isLoggable(Level.INFO))
                        LOGGER.info(message.toString());
                    fireEvent(message.toString(), ((i * 99.0) / numFiles));
                    continue;
                }
                final AbstractGridCoverage2DReader reader = (AbstractGridCoverage2DReader) format
                        .getReader(files.get(i));
                envelope = (GeneralEnvelope) reader.getOriginalEnvelope();
                actualCRS = reader.getCrs();

                // /////////////////////////////////////////////////////////////////////
                //
                // STEP 3
                // Get the type specifier for this image and the check that the
                // image has the correct sample model and color model.
                // If this is the first cycle of the loop we initialize
                // eveything.
                //
                // /////////////////////////////////////////////////////////////////////
                final ImageTypeSpecifier its = ((ImageTypeSpecifier) r.getImageTypes(0).next());
                boolean skipFeature = false;
                if (globEnvelope == null) {
                    // /////////////////////////////////////////////////////////////////////
                    //
                    // at the first step we initialize everything that we will
                    // reuse afterwards starting with color models, sample
                    // models, crs, etc....
                    //
                    // /////////////////////////////////////////////////////////////////////
                    defaultCM = its.getColorModel();
                    if (defaultCM instanceof IndexColorModel) {
                        IndexColorModel icm = (IndexColorModel) defaultCM;
                        int numBands = defaultCM.getNumColorComponents();
                        defaultPalette = new byte[3][icm.getMapSize()];
                        icm.getReds(defaultPalette[0]);
                        icm.getGreens(defaultPalette[0]);
                        icm.getBlues(defaultPalette[0]);
                        if (numBands == 4)
                            icm.getAlphas(defaultPalette[0]);

                    }
                    defaultSM = its.getSampleModel();
                    defaultCRS = actualCRS;
                    globEnvelope = new GeneralEnvelope(envelope);

                    // /////////////////////////////////////////////////////////////////////
                    //
                    // getting information about resolution
                    //
                    // /////////////////////////////////////////////////////////////////////

                    // //
                    //
                    // get the dimension of the hr image and build the model
                    // as well as
                    // computing the resolution
                    // //
                    // resetting reader and recreating stream, turnaround for a
                    // strange imageio bug
                    r.reset();
                    try {
                        inStream.reset();
                    } catch (IOException e) {
                        inStream = ImageIO.createImageInputStream(fileBeingProcessed);
                    }
                    //let's check if we got something now
                    if (inStream == null) {
                        //skip file
                        if (LOGGER.isLoggable(Level.WARNING))
                            LOGGER.warning("Skipping file " + fileBeingProcessed.toString());
                        continue;
                    }
                    r.setInput(inStream);
                    numberOfLevels = r.getNumImages(true);
                    resolutionLevels = new double[2][numberOfLevels];
                    double[] res = getResolution(envelope, new Rectangle(r.getWidth(0), r.getHeight(0)),
                            defaultCRS);
                    resolutionLevels[0][0] = res[0];
                    resolutionLevels[1][0] = res[1];

                    // resolutions levels
                    if (numberOfLevels > 1) {

                        for (int k = 0; k < numberOfLevels; k++) {
                            res = getResolution(envelope, new Rectangle(r.getWidth(k), r.getHeight(k)),
                                    defaultCRS);
                            resolutionLevels[0][k] = res[0];
                            resolutionLevels[1][k] = res[1];
                        }
                    }

                    // /////////////////////////////////////////////////////////////////////
                    //
                    // creating the schema
                    //
                    // /////////////////////////////////////////////////////////////////////
                    final SimpleFeatureTypeBuilder featureBuilder = new SimpleFeatureTypeBuilder();
                    featureBuilder.setName("Flag");
                    featureBuilder.setNamespaceURI("http://www.geo-solutions.it/");
                    featureBuilder.add("location", String.class);
                    featureBuilder.add("the_geom", Polygon.class, this.actualCRS);
                    featureBuilder.setDefaultGeometry("the_geom");
                    final SimpleFeatureType simpleFeatureType = featureBuilder.buildFeatureType();
                    // create the schema for the new shape file
                    index.createSchema(simpleFeatureType);

                    // get a feature writer
                    fw = index.getFeatureWriter(t);
                } else {
                    // ////////////////////////////////////////////////////////
                    // 
                    // comparing ColorModel
                    // comparing SampeModel
                    // comparing CRSs
                    // ////////////////////////////////////////////////////////
                    globEnvelope.add(envelope);
                    actualCM = its.getColorModel();
                    actualSM = its.getSampleModel();
                    skipFeature = (i > 0 ? !(CRS.equalsIgnoreMetadata(defaultCRS, actualCRS)) : false);
                    if (skipFeature)
                        LOGGER.warning(new StringBuffer("Skipping image ").append(files.get(i))
                                .append(" because CRSs do not match.").toString());
                    skipFeature = checkColorModels(defaultCM, defaultPalette, actualCM);
                    if (skipFeature)
                        LOGGER.warning(new StringBuffer("Skipping image ").append(files.get(i))
                                .append(" because color models do not match.").toString());
                    // defaultCM.getNumComponents()==actualCM.getNumComponents()&&
                    // defaultCM.getClass().equals(actualCM.getClass())
                    // && defaultSM.getNumBands() == actualSM
                    // .getNumBands()
                    // && defaultSM.getDataType() == actualSM
                    // .getDataType() &&
                    //
                    // if (skipFeature)
                    // LOGGER
                    // .warning(new StringBuffer("Skipping image ")
                    // .append(files.get(i))
                    // .append(
                    // " because cm or sm does not match.")
                    // .toString());
                    // res = getResolution(envelope, new
                    // Rectangle(r.getWidth(0),
                    // r.getHeight(0)), defaultCRS);
                    // if (Math.abs((resX - res[0]) / resX) > EPS
                    // || Math.abs(resY - res[1]) > EPS) {
                    // LOGGER.warning(new StringBuffer("Skipping image
                    // ").append(
                    // files.get(i)).append(
                    // " because resolutions does not match.")
                    // .toString());
                    // skipFeature = true;
                    // }
                }

                // ////////////////////////////////////////////////////////
                //
                // STEP 4
                //
                // create and store features
                //
                // ////////////////////////////////////////////////////////
                if (!skipFeature) {

                    final SimpleFeature feature = fw.next();
                    feature.setAttribute(1,
                            geomFactory.toGeometry(new ReferencedEnvelope((Envelope) envelope)));
                    feature.setAttribute(
                            0, absolute
                                    ? new StringBuilder(this.locationPath).append(File.separatorChar)
                                            .append(validFileName).toString()
                                    : validFileName);
                    fw.write();

                    message = new StringBuffer("Done with file ").append(files.get(i));
                    if (LOGGER.isLoggable(Level.FINE)) {
                        LOGGER.fine(message.toString());
                    }
                    message.append('\n');
                    fireEvent(message.toString(), (((i + 1) * 99.0) / numFiles));
                    doneSomething = true;
                } else
                    skipFeature = false;

                // ////////////////////////////////////////////////////////
                //
                // STEP 5
                //
                // release resources
                //
                // ////////////////////////////////////////////////////////
                try {
                    inStream.close();
                } catch (Exception e) {
                    // ignore exception
                }
                try {
                    r.dispose();
                } catch (Exception e) {
                    // ignore exception
                }
                // release resources
                reader.dispose();

            } catch (IOException e) {
                fireException(e);
                break;
            } catch (ArrayIndexOutOfBoundsException e) {
                fireException(e);
                break;
            }

        }
        try {
            if (fw != null)
                fw.close();
            t.commit();
            t.close();
            index.dispose();
        } catch (IOException e) {
            LOGGER.log(Level.SEVERE, e.getLocalizedMessage(), e);
        }
        createPropertiesFiles(globEnvelope, doneSomething);
    } catch (SecurityException el) {
        fireException(el);
        return;
    } catch (IOException el) {
        fireException(el);
        return;
    } finally {
        try {
            if (handler != null)
                handler.close();
        } catch (Throwable e) {
            // ignore
        }

    }

}

From source file:de.cismet.cids.custom.objecteditors.wunda_blau.WebDavPicturePanel.java

/**
 * DOCUMENT ME!/*from www . j  av  a  2s . c  om*/
 *
 * @param   fileName  DOCUMENT ME!
 *
 * @return  DOCUMENT ME!
 *
 * @throws  Exception  DOCUMENT ME!
 */
private BufferedImage downloadImageFromWebDAV(final String fileName) throws Exception {
    final InputStream iStream = webdavHelper.getFileFromWebDAV(fileName, webdavDirectory,
            getConnectionContext());
    try {
        final ImageInputStream iiStream = ImageIO.createImageInputStream(iStream);
        final Iterator<ImageReader> itReader = ImageIO.getImageReaders(iiStream);
        if (itReader.hasNext()) {
            final ImageReader reader = itReader.next();
            final ProgressMonitor monitor = new ProgressMonitor(this, "Bild wird bertragen...", "", 0, 100);
            //            monitor.setMillisToPopup(500);
            reader.addIIOReadProgressListener(new IIOReadProgressListener() {

                @Override
                public void sequenceStarted(final ImageReader source, final int minIndex) {
                }

                @Override
                public void sequenceComplete(final ImageReader source) {
                }

                @Override
                public void imageStarted(final ImageReader source, final int imageIndex) {
                    monitor.setProgress(monitor.getMinimum());
                }

                @Override
                public void imageProgress(final ImageReader source, final float percentageDone) {
                    if (monitor.isCanceled()) {
                        try {
                            iiStream.close();
                        } catch (final IOException ex) {
                            // NOP
                        }
                    } else {
                        monitor.setProgress(Math.round(percentageDone));
                    }
                }

                @Override
                public void imageComplete(final ImageReader source) {
                    monitor.setProgress(monitor.getMaximum());
                }

                @Override
                public void thumbnailStarted(final ImageReader source, final int imageIndex,
                        final int thumbnailIndex) {
                }

                @Override
                public void thumbnailProgress(final ImageReader source, final float percentageDone) {
                }

                @Override
                public void thumbnailComplete(final ImageReader source) {
                }

                @Override
                public void readAborted(final ImageReader source) {
                    monitor.close();
                }
            });

            final ImageReadParam param = reader.getDefaultReadParam();
            reader.setInput(iiStream, true, true);
            final BufferedImage result;
            try {
                result = reader.read(0, param);
            } finally {
                reader.dispose();
                iiStream.close();
            }
            return result;
        } else {
            return null;
        }
    } finally {
        IOUtils.closeQuietly(iStream);
    }
}

From source file:org.geotools.gce.imagemosaic.GranuleDescriptor.java

private void init(final BoundingBox granuleBBOX, final URL granuleUrl, final ImageReaderSpi suggestedSPI,
        final MultiLevelROI roiProvider, final boolean heterogeneousGranules,
        final boolean handleArtifactsFiltering, final Hints hints) {
    this.granuleBBOX = ReferencedEnvelope.reference(granuleBBOX);
    this.granuleUrl = granuleUrl;
    this.roiProvider = roiProvider;
    this.handleArtifactsFiltering = handleArtifactsFiltering;
    filterMe = handleArtifactsFiltering && roiProvider != null;

    // create the base grid to world transformation
    ImageInputStream inStream = null;
    ImageReader reader = null;
    try {/*from w  w w  .j a v  a2  s . c  o  m*/
        //
        //get info about the raster we have to read
        //

        // get a stream
        if (cachedStreamSPI == null) {
            cachedStreamSPI = ImageIOExt.getImageInputStreamSPI(granuleUrl, true);
            if (cachedStreamSPI == null) {
                final File file = DataUtilities.urlToFile(granuleUrl);
                if (file != null) {
                    if (LOGGER.isLoggable(Level.WARNING)) {
                        LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
                    }
                }
                throw new IllegalArgumentException(
                        "Unable to get an input stream for the provided granule " + granuleUrl.toString());
            }
        }
        assert cachedStreamSPI != null : "no cachedStreamSPI available!";
        inStream = cachedStreamSPI.createInputStreamInstance(granuleUrl, ImageIO.getUseCache(),
                ImageIO.getCacheDirectory());
        if (inStream == null) {
            final File file = DataUtilities.urlToFile(granuleUrl);
            if (file != null) {
                if (LOGGER.isLoggable(Level.WARNING)) {
                    LOGGER.log(Level.WARNING, Utils.getFileInfo(file));
                }
            }
            throw new IllegalArgumentException(
                    "Unable to get an input stream for the provided file " + granuleUrl.toString());
        }

        // get a reader and try to cache the suggested SPI first
        if (cachedReaderSPI == null) {
            inStream.mark();
            if (suggestedSPI != null && suggestedSPI.canDecodeInput(inStream)) {
                cachedReaderSPI = suggestedSPI;
                inStream.reset();
            } else {
                inStream.mark();
                reader = ImageIOExt.getImageioReader(inStream);
                if (reader != null)
                    cachedReaderSPI = reader.getOriginatingProvider();
                inStream.reset();
            }

        }
        if (reader == null) {
            if (cachedReaderSPI == null) {
                throw new IllegalArgumentException(
                        "Unable to get a ReaderSPI for the provided input: " + granuleUrl.toString());
            }
            reader = cachedReaderSPI.createReaderInstance();
        }

        if (reader == null)
            throw new IllegalArgumentException(
                    "Unable to get an ImageReader for the provided file " + granuleUrl.toString());
        boolean ignoreMetadata = customizeReaderInitialization(reader, hints);
        reader.setInput(inStream, false, ignoreMetadata);
        //get selected level and base level dimensions
        final Rectangle originalDimension = Utils.getDimension(0, reader);

        // build the g2W for this tile, in principle we should get it
        // somehow from the tile itself or from the index, but at the moment
        // we do not have such info, hence we assume that it is a simple
        // scale and translate
        this.geMapper = new GridToEnvelopeMapper(new GridEnvelope2D(originalDimension), granuleBBOX);
        geMapper.setPixelAnchor(PixelInCell.CELL_CENTER);//this is the default behavior but it is nice to write it down anyway
        this.baseGridToWorld = geMapper.createAffineTransform();

        // add the base level
        this.granuleLevels.put(Integer.valueOf(0),
                new GranuleOverviewLevelDescriptor(1, 1, originalDimension.width, originalDimension.height));

        ////////////////////// Setting overviewController ///////////////////////
        if (heterogeneousGranules) {
            // //
            //
            // Right now we are setting up overviewsController by assuming that
            // overviews are internal images as happens in TIFF images
            // We can improve this by leveraging on coverageReaders  
            //
            // //

            // Getting the first level descriptor
            final GranuleOverviewLevelDescriptor baseOverviewLevelDescriptor = granuleLevels.get(0);

            // Variables initialization
            final int numberOfOvervies = reader.getNumImages(true) - 1;
            final AffineTransform2D baseG2W = baseOverviewLevelDescriptor.getGridToWorldTransform();
            final int width = baseOverviewLevelDescriptor.getWidth();
            final int height = baseOverviewLevelDescriptor.getHeight();
            final double resX = AffineTransform2D.getScaleX0(baseG2W);
            final double resY = AffineTransform2D.getScaleY0(baseG2W);
            final double[] highestRes = new double[] { resX, resY };
            final double[][] overviewsResolution = new double[numberOfOvervies][2];

            // Populating overviews and initializing overviewsController
            for (int i = 0; i < numberOfOvervies; i++) {
                overviewsResolution[i][0] = (highestRes[0] * width) / reader.getWidth(i + 1);
                overviewsResolution[i][1] = (highestRes[1] * height) / reader.getHeight(i + 1);
            }
            overviewsController = new OverviewsController(highestRes, numberOfOvervies, overviewsResolution);
        }
        //////////////////////////////////////////////////////////////////////////

        if (hints != null && hints.containsKey(Utils.CHECK_AUXILIARY_METADATA)) {
            boolean checkAuxiliaryMetadata = (Boolean) hints.get(Utils.CHECK_AUXILIARY_METADATA);
            if (checkAuxiliaryMetadata) {
                checkPamDataset();
            }
        }

    } catch (IllegalStateException e) {
        throw new IllegalArgumentException(e);

    } catch (IOException e) {
        throw new IllegalArgumentException(e);
    } finally {
        // close/dispose stream and readers
        try {
            if (inStream != null) {
                inStream.close();
            }
        } catch (Throwable e) {
            throw new IllegalArgumentException(e);
        } finally {
            if (reader != null) {
                reader.dispose();
            }
        }
    }
}

From source file:org.geotools.gce.imagemosaic.GranuleDescriptor.java

/**
* Load a specified a raster as a portion of the granule describe by this {@link GranuleDescriptor}.
* 
* @param imageReadParameters the {@link ImageReadParam} to use for reading.
* @param index the index to use for the {@link ImageReader}.
* @param cropBBox the bbox to use for cropping. 
* @param mosaicWorldToGrid the cropping grid to world transform.
* @param request the incoming request to satisfy.
* @param hints {@link Hints} to be used for creating this raster.
* @return a specified a raster as a portion of the granule describe by this {@link GranuleDescriptor}.
* @throws IOException in case an error occurs.
*//*from   w ww .ja v  a2  s .  c o m*/
public GranuleLoadingResult loadRaster(final ImageReadParam imageReadParameters, final int index,
        final ReferencedEnvelope cropBBox, final MathTransform2D mosaicWorldToGrid,
        final RasterLayerRequest request, final Hints hints) throws IOException {

    if (LOGGER.isLoggable(java.util.logging.Level.FINER)) {
        final String name = Thread.currentThread().getName();
        LOGGER.finer("Thread:" + name + " Loading raster data for granuleDescriptor " + this.toString());
    }
    ImageReadParam readParameters = null;
    int imageIndex;
    final boolean useFootprint = roiProvider != null
            && request.getFootprintBehavior() != FootprintBehavior.None;
    Geometry inclusionGeometry = useFootprint ? roiProvider.getFootprint() : null;
    final ReferencedEnvelope bbox = useFootprint
            ? new ReferencedEnvelope(granuleBBOX.intersection(inclusionGeometry.getEnvelopeInternal()),
                    granuleBBOX.getCoordinateReferenceSystem())
            : granuleBBOX;
    boolean doFiltering = false;
    if (filterMe && useFootprint) {
        doFiltering = Utils.areaIsDifferent(inclusionGeometry, baseGridToWorld, granuleBBOX);
    }

    // intersection of this tile bound with the current crop bbox
    final ReferencedEnvelope intersection = new ReferencedEnvelope(bbox.intersection(cropBBox),
            cropBBox.getCoordinateReferenceSystem());
    if (intersection.isEmpty()) {
        if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
            LOGGER.fine(new StringBuilder("Got empty intersection for granule ").append(this.toString())
                    .append(" with request ").append(request.toString())
                    .append(" Resulting in no granule loaded: Empty result").toString());
        }
        return null;
    }

    // check if the requested bbox intersects or overlaps the requested area 
    if (useFootprint && inclusionGeometry != null && !JTS.toGeometry(cropBBox).intersects(inclusionGeometry)) {
        if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
            LOGGER.fine(new StringBuilder("Got empty intersection for granule ").append(this.toString())
                    .append(" with request ").append(request.toString())
                    .append(" Resulting in no granule loaded: Empty result").toString());
        }
        return null;
    }

    ImageInputStream inStream = null;
    ImageReader reader = null;
    try {
        //
        //get info about the raster we have to read
        //

        // get a stream
        assert cachedStreamSPI != null : "no cachedStreamSPI available!";
        inStream = cachedStreamSPI.createInputStreamInstance(granuleUrl, ImageIO.getUseCache(),
                ImageIO.getCacheDirectory());
        if (inStream == null)
            return null;

        // get a reader and try to cache the relevant SPI
        if (cachedReaderSPI == null) {
            reader = ImageIOExt.getImageioReader(inStream);
            if (reader != null)
                cachedReaderSPI = reader.getOriginatingProvider();
        } else
            reader = cachedReaderSPI.createReaderInstance();
        if (reader == null) {
            if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
                LOGGER.warning(new StringBuilder("Unable to get s reader for granuleDescriptor ")
                        .append(this.toString()).append(" with request ").append(request.toString())
                        .append(" Resulting in no granule loaded: Empty result").toString());
            }
            return null;
        }
        // set input
        customizeReaderInitialization(reader, hints);
        reader.setInput(inStream);

        // Checking for heterogeneous granules
        if (request.isHeterogeneousGranules()) {
            // create read parameters
            readParameters = new ImageReadParam();

            //override the overviews controller for the base layer
            imageIndex = ReadParamsController.setReadParams(
                    request.spatialRequestHelper.getRequestedResolution(), request.getOverviewPolicy(),
                    request.getDecimationPolicy(), readParameters, request.rasterManager, overviewsController);
        } else {
            imageIndex = index;
            readParameters = imageReadParameters;
        }

        //get selected level and base level dimensions
        final GranuleOverviewLevelDescriptor selectedlevel = getLevel(imageIndex, reader);

        // now create the crop grid to world which can be used to decide
        // which source area we need to crop in the selected level taking
        // into account the scale factors imposed by the selection of this
        // level together with the base level grid to world transformation
        AffineTransform2D cropWorldToGrid = new AffineTransform2D(selectedlevel.gridToWorldTransformCorner);
        cropWorldToGrid = (AffineTransform2D) cropWorldToGrid.inverse();
        // computing the crop source area which lives into the
        // selected level raster space, NOTICE that at the end we need to
        // take into account the fact that we might also decimate therefore
        // we cannot just use the crop grid to world but we need to correct
        // it.
        final Rectangle sourceArea = CRS.transform(cropWorldToGrid, intersection).toRectangle2D().getBounds();
        //gutter
        if (selectedlevel.baseToLevelTransform.isIdentity()) {
            sourceArea.grow(2, 2);
        }
        XRectangle2D.intersect(sourceArea, selectedlevel.rasterDimensions, sourceArea);//make sure roundings don't bother us
        // is it empty??
        if (sourceArea.isEmpty()) {
            if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
                LOGGER.fine("Got empty area for granuleDescriptor " + this.toString() + " with request "
                        + request.toString() + " Resulting in no granule loaded: Empty result");

            }
            return null;

        } else if (LOGGER.isLoggable(java.util.logging.Level.FINER)) {
            LOGGER.finer("Loading level " + imageIndex + " with source region: " + sourceArea + " subsampling: "
                    + readParameters.getSourceXSubsampling() + "," + readParameters.getSourceYSubsampling()
                    + " for granule:" + granuleUrl);
        }

        // Setting subsampling 
        int newSubSamplingFactor = 0;
        final String pluginName = cachedReaderSPI.getPluginClassName();
        if (pluginName != null && pluginName.equals(ImageUtilities.DIRECT_KAKADU_PLUGIN)) {
            final int ssx = readParameters.getSourceXSubsampling();
            final int ssy = readParameters.getSourceYSubsampling();
            newSubSamplingFactor = ImageIOUtilities.getSubSamplingFactor2(ssx, ssy);
            if (newSubSamplingFactor != 0) {
                if (newSubSamplingFactor > maxDecimationFactor && maxDecimationFactor != -1) {
                    newSubSamplingFactor = maxDecimationFactor;
                }
                readParameters.setSourceSubsampling(newSubSamplingFactor, newSubSamplingFactor, 0, 0);
            }
        }

        // set the source region
        readParameters.setSourceRegion(sourceArea);
        RenderedImage raster;
        try {
            // read
            raster = request.getReadType().read(readParameters, imageIndex, granuleUrl,
                    selectedlevel.rasterDimensions, reader, hints, false);

        } catch (Throwable e) {
            if (LOGGER.isLoggable(java.util.logging.Level.FINE)) {
                LOGGER.log(java.util.logging.Level.FINE,
                        "Unable to load raster for granuleDescriptor " + this.toString() + " with request "
                                + request.toString() + " Resulting in no granule loaded: Empty result",
                        e);
            }
            return null;
        }

        // use fixed source area
        sourceArea.setRect(readParameters.getSourceRegion());

        //
        // setting new coefficients to define a new affineTransformation
        // to be applied to the grid to world transformation
        // -----------------------------------------------------------------------------------
        //
        // With respect to the original envelope, the obtained planarImage
        // needs to be rescaled. The scaling factors are computed as the
        // ratio between the cropped source region sizes and the read
        // image sizes.
        //
        // place it in the mosaic using the coords created above;
        double decimationScaleX = ((1.0 * sourceArea.width) / raster.getWidth());
        double decimationScaleY = ((1.0 * sourceArea.height) / raster.getHeight());
        final AffineTransform decimationScaleTranform = XAffineTransform.getScaleInstance(decimationScaleX,
                decimationScaleY);

        // keep into account translation  to work into the selected level raster space
        final AffineTransform afterDecimationTranslateTranform = XAffineTransform
                .getTranslateInstance(sourceArea.x, sourceArea.y);

        // now we need to go back to the base level raster space
        final AffineTransform backToBaseLevelScaleTransform = selectedlevel.baseToLevelTransform;

        // now create the overall transform
        final AffineTransform finalRaster2Model = new AffineTransform(baseGridToWorld);
        finalRaster2Model.concatenate(CoverageUtilities.CENTER_TO_CORNER);

        if (!XAffineTransform.isIdentity(backToBaseLevelScaleTransform, Utils.AFFINE_IDENTITY_EPS))
            finalRaster2Model.concatenate(backToBaseLevelScaleTransform);
        if (!XAffineTransform.isIdentity(afterDecimationTranslateTranform, Utils.AFFINE_IDENTITY_EPS))
            finalRaster2Model.concatenate(afterDecimationTranslateTranform);
        if (!XAffineTransform.isIdentity(decimationScaleTranform, Utils.AFFINE_IDENTITY_EPS))
            finalRaster2Model.concatenate(decimationScaleTranform);

        // adjust roi
        if (useFootprint) {

            ROIGeometry transformed;
            try {
                transformed = roiProvider.getTransformedROI(finalRaster2Model.createInverse());
                if (transformed.getAsGeometry().isEmpty()) {
                    // inset might have killed the geometry fully
                    return null;
                }

                PlanarImage pi = PlanarImage.wrapRenderedImage(raster);
                if (!transformed.intersects(pi.getBounds())) {
                    return null;
                }
                pi.setProperty("ROI", transformed);
                raster = pi;

            } catch (NoninvertibleTransformException e) {
                if (LOGGER.isLoggable(java.util.logging.Level.INFO))
                    LOGGER.info("Unable to create a granuleDescriptor " + this.toString()
                            + " due to a problem when managing the ROI");
                return null;
            }

        }
        // keep into account translation factors to place this tile
        finalRaster2Model.preConcatenate((AffineTransform) mosaicWorldToGrid);
        final Interpolation interpolation = request.getInterpolation();

        //paranoiac check to avoid that JAI freaks out when computing its internal layouT on images that are too small
        Rectangle2D finalLayout = ImageUtilities.layoutHelper(raster, (float) finalRaster2Model.getScaleX(),
                (float) finalRaster2Model.getScaleY(), (float) finalRaster2Model.getTranslateX(),
                (float) finalRaster2Model.getTranslateY(), interpolation);
        if (finalLayout.isEmpty()) {
            if (LOGGER.isLoggable(java.util.logging.Level.INFO))
                LOGGER.info("Unable to create a granuleDescriptor " + this.toString()
                        + " due to jai scale bug creating a null source area");
            return null;
        }

        // apply the affine transform  conserving indexed color model
        final RenderingHints localHints = new RenderingHints(JAI.KEY_REPLACE_INDEX_COLOR_MODEL,
                interpolation instanceof InterpolationNearest ? Boolean.FALSE : Boolean.TRUE);
        if (XAffineTransform.isIdentity(finalRaster2Model, Utils.AFFINE_IDENTITY_EPS)) {
            return new GranuleLoadingResult(raster, null, granuleUrl, doFiltering, pamDataset);
        } else {
            //
            // In case we are asked to use certain tile dimensions we tile
            // also at this stage in case the read type is Direct since
            // buffered images comes up untiled and this can affect the
            // performances of the subsequent affine operation.
            //
            final Dimension tileDimensions = request.getTileDimensions();
            if (tileDimensions != null && request.getReadType().equals(ReadType.DIRECT_READ)) {
                final ImageLayout layout = new ImageLayout();
                layout.setTileHeight(tileDimensions.width).setTileWidth(tileDimensions.height);
                localHints.add(new RenderingHints(JAI.KEY_IMAGE_LAYOUT, layout));
            } else {
                if (hints != null && hints.containsKey(JAI.KEY_IMAGE_LAYOUT)) {
                    final Object layout = hints.get(JAI.KEY_IMAGE_LAYOUT);
                    if (layout != null && layout instanceof ImageLayout) {
                        localHints
                                .add(new RenderingHints(JAI.KEY_IMAGE_LAYOUT, ((ImageLayout) layout).clone()));
                    }
                }
            }
            if (hints != null && hints.containsKey(JAI.KEY_TILE_CACHE)) {
                final Object cache = hints.get(JAI.KEY_TILE_CACHE);
                if (cache != null && cache instanceof TileCache)
                    localHints.add(new RenderingHints(JAI.KEY_TILE_CACHE, (TileCache) cache));
            }
            if (hints != null && hints.containsKey(JAI.KEY_TILE_SCHEDULER)) {
                final Object scheduler = hints.get(JAI.KEY_TILE_SCHEDULER);
                if (scheduler != null && scheduler instanceof TileScheduler)
                    localHints.add(new RenderingHints(JAI.KEY_TILE_SCHEDULER, (TileScheduler) scheduler));
            }
            boolean addBorderExtender = true;
            if (hints != null && hints.containsKey(JAI.KEY_BORDER_EXTENDER)) {
                final Object extender = hints.get(JAI.KEY_BORDER_EXTENDER);
                if (extender != null && extender instanceof BorderExtender) {
                    localHints.add(new RenderingHints(JAI.KEY_BORDER_EXTENDER, (BorderExtender) extender));
                    addBorderExtender = false;
                }
            }
            // BORDER extender
            if (addBorderExtender) {
                localHints.add(ImageUtilities.BORDER_EXTENDER_HINTS);
            }

            ImageWorker iw = new ImageWorker(raster);
            iw.setRenderingHints(localHints);
            iw.affine(finalRaster2Model, interpolation, request.getBackgroundValues());
            return new GranuleLoadingResult(iw.getRenderedImage(), null, granuleUrl, doFiltering, pamDataset);
        }

    } catch (IllegalStateException e) {
        if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
            LOGGER.log(java.util.logging.Level.WARNING,
                    new StringBuilder("Unable to load raster for granuleDescriptor ").append(this.toString())
                            .append(" with request ").append(request.toString())
                            .append(" Resulting in no granule loaded: Empty result").toString(),
                    e);
        }
        return null;
    } catch (org.opengis.referencing.operation.NoninvertibleTransformException e) {
        if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
            LOGGER.log(java.util.logging.Level.WARNING,
                    new StringBuilder("Unable to load raster for granuleDescriptor ").append(this.toString())
                            .append(" with request ").append(request.toString())
                            .append(" Resulting in no granule loaded: Empty result").toString(),
                    e);
        }
        return null;
    } catch (TransformException e) {
        if (LOGGER.isLoggable(java.util.logging.Level.WARNING)) {
            LOGGER.log(java.util.logging.Level.WARNING,
                    new StringBuilder("Unable to load raster for granuleDescriptor ").append(this.toString())
                            .append(" with request ").append(request.toString())
                            .append(" Resulting in no granule loaded: Empty result").toString(),
                    e);
        }
        return null;

    } finally {
        try {
            if (request.getReadType() != ReadType.JAI_IMAGEREAD && inStream != null) {
                inStream.close();
            }
        } finally {
            if (request.getReadType() != ReadType.JAI_IMAGEREAD && reader != null) {
                reader.dispose();
            }
        }
    }
}