Example usage for javax.ejb EJBException EJBException

Introduction

In this page you can find the example usage for javax.ejb EJBException EJBException.

Prototype

public EJBException(Exception ex) 

Source Link

Document

Constructs an EJBException that embeds the originally thrown exception.

Usage

From source file:org.cesecore.certificates.certificate.CertificateCreateSessionBean.java

/**
 * Help Method that extracts the CA specified in the request.
 * //from  www.j  a  v a2s .c  om
 * @throws AuthorizationDeniedException
 * @throws CADoesntExistsException
 */
private CA getCAFromRequest(final AuthenticationToken admin, final RequestMessage req)
        throws CADoesntExistsException, AuthorizationDeniedException {
    CA ca = null;
    // See if we can get issuerDN directly from request
    if (req.getIssuerDN() != null) {
        String dn = certificateStoreSession.getCADnFromRequest(req);
        ca = caSession.getCA(admin, dn.hashCode());
        if (log.isDebugEnabled()) {
            log.debug("Using CA (from issuerDN) with id: " + ca.getCAId() + " and DN: " + ca.getSubjectDN());
        }
    } else {
        throw new CADoesntExistsException(intres.getLocalizedMessage("createcert.canotfoundissuerusername",
                req.getIssuerDN(), req.getUsername()));
    }

    if (ca.getStatus() != CAConstants.CA_ACTIVE) {
        final String msg = intres.getLocalizedMessage("createcert.canotactive", ca.getSubjectDN());
        throw new EJBException(msg);
    }
    return ca;
}

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From source file:com.egt.ejb.toolkit.ToolKitSessionBean.java

@Override
public void generarJasperReport() {
    try {/*w  w  w .  j a va 2 s  .  c o  m*/
        VelocityContext context = new VelocityContext();
        String query = VelocityEngineer.write(context, "sdk-query-generar-jasper-report.vm").toString();
        List<Dominio> dominios = dominioFacade.findByQuery(query, EnumTipoQuery.NATIVE, REFRESH);
        generarJasperReport(dominios);
        TLC.getBitacora().info(Bundle.getString("generar.informes.ok"), dominios.size());
    } catch (Exception ex) {
        //          TLC.getBitacora().fatal(ex);
        throw ex instanceof EJBException ? (EJBException) ex : new EJBException(ex);
    }
}

---

From source file:edu.harvard.iq.dvn.core.analysis.NetworkDataServiceBean.java

private void saveNetworkDBFiles(StudyFileEditBean editBean) {
    File temploc = new File(editBean.getTempSystemFileLocation());
    File tempDir = temploc.getParentFile();
    File ingestedDir = new File(tempDir, "ingested");
    if (!ingestedDir.exists()) {
        ingestedDir.mkdirs();/*from  www  . j  a  va2  s  . c o m*/
    }
    String neo4jDirName = FileUtil.replaceExtension(temploc.getName(), this.NEO4J_EXTENSION);
    File neo4jDir = new File(ingestedDir, neo4jDirName);
    neo4jDir.mkdirs();
    String sqliteFileName = FileUtil.replaceExtension(temploc.getName(), this.SQLITE_EXTENSION);
    File sqliteFile = new File(ingestedDir, sqliteFileName);

    try {

        if (batchInserterFactory == null) {
            batchInserterFactory = new GraphBatchInserterFactory(LIB_PATH);
        }
        dvnGBI = batchInserterFactory.newInstance(neo4jDir.getAbsolutePath(), sqliteFile.getAbsolutePath(),
                SQLITE_CONFIG_FILE, NEO4J_CONFIG_FILE);
        dvnGBI.ingest(editBean.getTempSystemFileLocation());
    } catch (Exception e) {
        throw new EJBException(e);
    }

}

---

From source file:edu.harvard.iq.dvn.core.study.StudyFileServiceBean.java

private void addFiles(StudyVersion studyVersion, List<StudyFileEditBean> newFiles, VDCUser user,
        String ingestEmail, int messageLevel) {

    Study study = studyVersion.getStudy();
    MD5Checksum md5Checksum = new MD5Checksum();

    // step 1: divide the files, based on subsettable or not
    List subsettableFiles = new ArrayList();
    List otherFiles = new ArrayList();

    Iterator iter = newFiles.iterator();
    while (iter.hasNext()) {
        StudyFileEditBean fileBean = (StudyFileEditBean) iter.next();
        // Note that for the "special" OtherFiles we want to utilize the 
        // same ingest scheme as for subsettables: they will be queued and 
        // processed asynchronously, and the user will be notified by email.
        // - L.A.
        if (fileBean.getStudyFile().isSubsettable() || fileBean.getStudyFile() instanceof SpecialOtherFile) {
            subsettableFiles.add(fileBean);
        } else {//from w  ww .  j  a va 2s.  co  m
            otherFiles.add(fileBean);
            // also add to study, so that it will be flushed for the ids
            fileBean.getStudyFile().setStudy(study);
            study.getStudyFiles().add(fileBean.getStudyFile());

        }
    }

    if (otherFiles.size() > 0) {
        // Only persist the studyVersion we are adding a file that doesn't need to be ingested (non-subsettable)
        if (studyVersion.getId() == null) {
            em.persist(studyVersion);
            em.flush(); // populates studyVersion_id
        } else {
            // There is a problem merging the existing studyVersion,
            // so since all we need from the exisiting version is the versionNote,
            // we get a fresh copy of the object from the database, and update it with the versionNote.
            String versionNote = studyVersion.getVersionNote();
            studyVersion = em.find(StudyVersion.class, studyVersion.getId());
            studyVersion.setVersionNote(versionNote);
        }

    }

    // step 2: iterate through nonsubsettable files, moving from temp to new location
    File newDir = FileUtil.getStudyFileDir(study);
    iter = otherFiles.iterator();
    while (iter.hasNext()) {
        StudyFileEditBean fileBean = (StudyFileEditBean) iter.next();
        StudyFile f = fileBean.getStudyFile();
        File tempFile = new File(fileBean.getTempSystemFileLocation());
        File newLocationFile = new File(newDir, f.getFileSystemName());
        try {
            FileUtil.copyFile(tempFile, newLocationFile);
            tempFile.delete();
            f.setFileSystemLocation(newLocationFile.getAbsolutePath());

            fileBean.getFileMetadata().setStudyVersion(studyVersion);

            em.persist(fileBean.getStudyFile());
            em.persist(fileBean.getFileMetadata());

        } catch (IOException ex) {
            throw new EJBException(ex);
        }
        f.setMd5(md5Checksum.CalculateMD5(f.getFileSystemLocation()));
    }

    // step 3: iterate through subsettable files, sending a message via JMS
    if (subsettableFiles.size() > 0) {
        QueueConnection conn = null;
        QueueSession session = null;
        QueueSender sender = null;
        try {
            conn = factory.createQueueConnection();
            session = conn.createQueueSession(false, 0);
            sender = session.createSender(queue);

            DSBIngestMessage ingestMessage = new DSBIngestMessage(messageLevel);
            ingestMessage.setFileBeans(subsettableFiles);
            ingestMessage.setIngestEmail(ingestEmail);
            ingestMessage.setIngestUserId(user.getId());
            ingestMessage.setStudyId(study.getId());
            ingestMessage.setStudyVersionId(studyVersion.getId());
            ingestMessage.setVersionNote(studyVersion.getVersionNote());

            ingestMessage.setStudyTitle(studyVersion.getMetadata().getTitle());
            ingestMessage.setStudyGlobalId(studyVersion.getStudy().getGlobalId());
            ingestMessage.setStudyVersionNumber(studyVersion.getVersionNumber().toString());
            ingestMessage.setDataverseName(studyVersion.getStudy().getOwner().getName());

            Message message = session.createObjectMessage(ingestMessage);

            String detail = "Ingest processing for " + subsettableFiles.size() + " file(s).";
            studyService.addStudyLock(study.getId(), user.getId(), detail);
            try {
                sender.send(message);
            } catch (Exception ex) {
                // If anything goes wrong, remove the study lock.
                studyService.removeStudyLock(study.getId());
                ex.printStackTrace();
            }

            // send an e-mail
            if (ingestMessage.sendInfoMessage()) {
                mailService.sendIngestRequestedNotification(ingestMessage, subsettableFiles);
            }

        } catch (JMSException ex) {
            ex.printStackTrace();
        } finally {
            try {

                if (sender != null) {
                    sender.close();
                }
                if (session != null) {
                    session.close();
                }
                if (conn != null) {
                    conn.close();
                }
            } catch (JMSException ex) {
                ex.printStackTrace();
            }
        }
    }

    if (!otherFiles.isEmpty()) {
        studyService.saveStudyVersion(studyVersion, user.getId());

    }

}

---

From source file:edu.harvard.iq.dataverse.harvest.client.HarvesterServiceBean.java

@TransactionAttribute(TransactionAttributeType.NOT_SUPPORTED)
public Long processRecord(DataverseRequest dataverseRequest, Logger hdLogger, PrintWriter importCleanupLog,
        OaiHandler oaiHandler, String identifier, MutableBoolean recordErrorOccurred,
        MutableLong processedSizeThisBatch, List<String> deletedIdentifiers) {
    String errMessage = null;//w  w w.j  av  a  2  s  . c o m
    Dataset harvestedDataset = null;
    logGetRecord(hdLogger, oaiHandler, identifier);
    File tempFile = null;

    try {
        FastGetRecord record = oaiHandler.runGetRecord(identifier);
        errMessage = record.getErrorMessage();

        if (errMessage != null) {
            hdLogger.log(Level.SEVERE, "Error calling GetRecord - " + errMessage);
        } else if (record.isDeleted()) {
            hdLogger.info(
                    "Deleting harvesting dataset for " + identifier + ", per the OAI server's instructions.");

            Dataset dataset = datasetService
                    .getDatasetByHarvestInfo(oaiHandler.getHarvestingClient().getDataverse(), identifier);
            if (dataset != null) {
                hdLogger.info("Deleting dataset " + dataset.getGlobalId());
                deleteHarvestedDataset(dataset, dataverseRequest, hdLogger);
                // TODO: 
                // check the status of that Delete - see if it actually succeeded
                deletedIdentifiers.add(identifier);
            } else {
                hdLogger.info("No dataset found for " + identifier + ", skipping delete. ");
            }

        } else {
            hdLogger.info("Successfully retrieved GetRecord response.");

            tempFile = record.getMetadataFile();
            PrintWriter cleanupLog;
            harvestedDataset = importService.doImportHarvestedDataset(dataverseRequest,
                    oaiHandler.getHarvestingClient(), identifier, oaiHandler.getMetadataPrefix(),
                    record.getMetadataFile(), importCleanupLog);

            hdLogger.fine("Harvest Successful for identifier " + identifier);
            hdLogger.fine("Size of this record: " + record.getMetadataFile().length());
            processedSizeThisBatch.add(record.getMetadataFile().length());
        }
    } catch (Throwable e) {
        logGetRecordException(hdLogger, oaiHandler, identifier, e);
        errMessage = "Caught exception while executing GetRecord on " + identifier;
        //logException(e, hdLogger);

    } finally {
        if (tempFile != null) {
            // temporary - let's not delete the temp metadata file if anything went wrong, for now:
            if (errMessage == null) {
                try {
                    tempFile.delete();
                } catch (Throwable t) {
                }
                ;
            }
        }
    }

    // TODO: the message below is taken from DVN3; - figure out what it means...
    // 
    // If we got an Error from the OAI server or an exception happened during import, then
    // set recordErrorOccurred to true (if recordErrorOccurred is being used)
    // otherwise throw an exception (if recordErrorOccurred is not used, i.e null)

    if (errMessage != null) {
        if (recordErrorOccurred != null) {
            recordErrorOccurred.setValue(true);
        } else {
            throw new EJBException(errMessage);
        }
    }

    return harvestedDataset != null ? harvestedDataset.getId() : null;
}

---

From source file:com.egt.ejb.toolkit.ToolKitSessionBean.java

@Override
public void generarJasperViews() {
    try {//from  ww w . j  av a 2s . com
        VelocityContext context = new VelocityContext();
        String query = VelocityEngineer.write(context, "sdk-query-generar-jasper-query.vm").toString();
        List<Dominio> dominios = dominioFacade.findByQuery(query, EnumTipoQuery.NATIVE, REFRESH);
        generarJasperViews(dominios);
        TLC.getBitacora().info(Bundle.getString("generar.views.ok"), dominios.size());
    } catch (Exception ex) {
        //          TLC.getBitacora().fatal(ex);
        throw ex instanceof EJBException ? (EJBException) ex : new EJBException(ex);
    }
}

---

From source file:org.ejbca.core.ejb.ca.store.CertificateStoreSessionBean.java

@TransactionAttribute(TransactionAttributeType.REQUIRED)
@Override//from  ww w  .ja  va  2  s  .c  o  m
public void setArchivedStatus(Admin admin, String fingerprint) throws AuthorizationDeniedException {
    if (admin.getAdminType() != Admin.TYPE_INTERNALUSER) {
        throw new AuthorizationDeniedException("Unauthorized");
    }
    CertificateData rev = CertificateData.findByFingerprint(entityManager, fingerprint);
    if (rev != null) {
        rev.setStatus(SecConst.CERT_ARCHIVED);
        if (log.isDebugEnabled()) {
            log.debug("Set status ARCHIVED for certificate with fp: " + fingerprint + ", revocation reason is: "
                    + rev.getRevocationReason());
        }
    } else {
        String msg = intres.getLocalizedMessage("store.errorcertinfo", fingerprint);
        logSession.log(admin, 0, LogConstants.MODULE_CA, new java.util.Date(), null, null,
                LogConstants.EVENT_ERROR_UNKNOWN, msg);
        throw new EJBException(msg);
    }
}

---

From source file:edu.harvard.iq.dvn.core.harvest.HarvesterServiceBean.java

@TransactionAttribute(TransactionAttributeType.NOT_SUPPORTED)
public ResumptionTokenType harvestFromIdentifiers(Logger hdLogger, ResumptionTokenType resumptionToken,
        HarvestingDataverse dataverse, String from, String until, List<Long> harvestedStudyIds,
        List<String> failedIdentifiers, MutableBoolean harvestErrorOccurred) throws java.io.IOException,
        ParserConfigurationException, SAXException, TransformerException, JAXBException {
    String encodedSet = dataverse.getHarvestingSet() == null ? null
            : URLEncoder.encode(dataverse.getHarvestingSet(), "UTF-8");
    ListIdentifiers listIdentifiers = null;

    if (resumptionToken == null) {
        listIdentifiers = new ListIdentifiers(dataverse.getServerUrl(), from, until, encodedSet,
                URLEncoder.encode(dataverse.getHarvestFormatType().getMetadataPrefix(), "UTF-8"));
    } else {/*from   w  w w .  j av  a2 s  .co  m*/
        hdLogger.log(Level.INFO, "harvestFromIdentifiers(), resumptionToken=" + resumptionToken.getValue());
        listIdentifiers = new ListIdentifiers(dataverse.getServerUrl(), resumptionToken.getValue());
    }

    Document doc = listIdentifiers.getDocument();

    //       JAXBContext jc = JAXBContext.newInstance("edu.harvard.hmdc.vdcnet.jaxb.oai");
    //       Unmarshaller unmarshaller = jc.createUnmarshaller();
    JAXBElement unmarshalObj = (JAXBElement) unmarshaller.unmarshal(doc);
    OAIPMHtype oaiObj = (OAIPMHtype) unmarshalObj.getValue();

    if (oaiObj.getError() != null && oaiObj.getError().size() > 0) {
        if (oaiObj.getError().get(0).getCode().equals(OAIPMHerrorcodeType.NO_RECORDS_MATCH)) {
            hdLogger.info("ListIdentifiers returned NO_RECORDS_MATCH - no studies found to be harvested.");
        } else {
            handleOAIError(hdLogger, oaiObj,
                    "calling listIdentifiers, oaiServer= " + dataverse.getServerUrl() + ",from=" + from
                            + ",until=" + until + ",encodedSet=" + encodedSet + ",format="
                            + dataverse.getHarvestFormatType().getMetadataPrefix());
            throw new EJBException("Received OAI Error response calling ListIdentifiers");
        }
    } else {
        ListIdentifiersType listIdentifiersType = oaiObj.getListIdentifiers();
        if (listIdentifiersType != null) {
            resumptionToken = listIdentifiersType.getResumptionToken();
            for (Iterator it = listIdentifiersType.getHeader().iterator(); it.hasNext();) {
                HeaderType header = (HeaderType) it.next();
                MutableBoolean getRecordErrorOccurred = new MutableBoolean(false);
                Long studyId = getRecord(hdLogger, dataverse, header.getIdentifier(),
                        dataverse.getHarvestFormatType().getMetadataPrefix(), getRecordErrorOccurred);
                if (studyId != null) {
                    harvestedStudyIds.add(studyId);
                }
                if (getRecordErrorOccurred.booleanValue() == true) {
                    failedIdentifiers.add(header.getIdentifier());
                }

            }

        }
    }
    String logMsg = "Returning from harvestFromIdentifiers";

    if (resumptionToken == null) {
        logMsg += " resumptionToken is null";
    } else if (!StringUtil.isEmpty(resumptionToken.getValue())) {
        logMsg += " resumptionToken is " + resumptionToken.getValue();
    } else {
        // Some OAIServers return an empty resumptionToken element when all
        // the identifiers have been sent, so need to check  for this, and 
        // treat it as if resumptiontoken is null.
        logMsg += " resumptionToken is empty, setting return value to null.";
        resumptionToken = null;
    }
    hdLogger.info(logMsg);
    return resumptionToken;
}

---

From source file:io.hops.hopsworks.common.user.AuthController.java

private void resetProjectCertPassword(Users p, String oldPass) {
    //For every project, change the certificate secret in the database
    //Get cert password by decrypting it with old password
    List<Project> projects = projectFacade.findAllMemberStudies(p);
    List<ProjectGenericUserCerts> pguCerts = null;
    try {//from  ww  w  .j av  a  2  s . c o  m
        for (Project project : projects) {
            UserCerts userCert = userCertsFacade.findUserCert(project.getName(), p.getUsername());
            String masterEncryptionPassword = certificatesMgmService.getMasterEncryptionPassword();
            String certPassword = HopsUtils.decrypt(oldPass, userCert.getUserKeyPwd(),
                    masterEncryptionPassword);
            //Encrypt it with new password and store it in the db
            String newSecret = HopsUtils.encrypt(p.getPassword(), certPassword, masterEncryptionPassword);
            userCert.setUserKeyPwd(newSecret);
            userCertsFacade.update(userCert);

            //If user is owner of the project, update projectgenericuser certs as well
            if (project.getOwner().equals(p)) {
                if (pguCerts == null) {
                    pguCerts = new ArrayList<>();
                }
                ProjectGenericUserCerts pguCert = userCertsFacade
                        .findProjectGenericUserCerts(project.getName() + Settings.PROJECT_GENERIC_USER_SUFFIX);
                pguCerts.add(userCertsFacade
                        .findProjectGenericUserCerts(project.getName() + Settings.PROJECT_GENERIC_USER_SUFFIX));
                String pguCertPassword = HopsUtils.decrypt(oldPass, pguCert.getCertificatePassword(),
                        masterEncryptionPassword);
                //Encrypt it with new password and store it in the db
                String newPguSecret = HopsUtils.encrypt(p.getPassword(), pguCertPassword,
                        masterEncryptionPassword);
                pguCert.setCertificatePassword(newPguSecret);
                userCertsFacade.updatePGUCert(pguCert);
            }
        }
    } catch (Exception ex) {
        LOGGER.log(Level.SEVERE, null, ex);
        throw new EJBException(ex);
    }

}

---

From source file:org.ejbca.core.ejb.ca.store.CertificateStoreSessionBean.java

@TransactionAttribute(TransactionAttributeType.REQUIRED)
@Override//from   w w  w  .  j  ava2s  .com
public void setRevokeStatus(Admin admin, String issuerdn, BigInteger serno, Date revokedate,
        Collection<Integer> publishers, int reason, String userDataDN) {
    if (log.isTraceEnabled()) {
        log.trace(">setRevokeStatus(),  issuerdn=" + issuerdn + ", serno=" + serno.toString(16) + ", reason="
                + reason);
    }
    try {
        Certificate certificate = findCertificateByIssuerAndSerno(admin, issuerdn, serno);
        setRevokeStatus(admin, certificate, revokedate, publishers, reason, userDataDN);
    } catch (FinderException e) {
        String msg = intres.getLocalizedMessage("store.errorfindcertserno", serno.toString(16));
        logSession.log(admin, issuerdn.hashCode(), LogConstants.MODULE_CA, new java.util.Date(), null, null,
                LogConstants.EVENT_ERROR_REVOKEDCERT, msg);
        throw new EJBException(e);
    }
    if (log.isTraceEnabled()) {
        log.trace("<setRevokeStatus(),  issuerdn=" + issuerdn + ", serno=" + serno.toString(16) + ", reason="
                + reason);
    }
}

---

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