List of usage examples for javafx.scene.layout VBox setSpacing
public final void setSpacing(double value)
From source file:gov.va.isaac.gui.preferences.plugins.ViewCoordinatePreferencesPluginView.java
@Override public Region getContent() { if (hBox == null) { VBox statedInferredToggleGroupVBox = new VBox(); statedInferredToggleGroupVBox.setSpacing(4.0); //Instantiate Everything pathComboBox = new ComboBox<>(); //Path statedInferredToggleGroup = new ToggleGroup(); //Stated / Inferred List<RadioButton> statedInferredOptionButtons = new ArrayList<>(); datePicker = new DatePicker(); //Date timeSelectCombo = new ComboBox<Long>(); //Time //Radio buttons for (StatedInferredOptions option : StatedInferredOptions.values()) { RadioButton optionButton = new RadioButton(); if (option == StatedInferredOptions.STATED) { optionButton.setText("Stated"); } else if (option == StatedInferredOptions.INFERRED_THEN_STATED) { optionButton.setText("Inferred Then Stated"); } else if (option == StatedInferredOptions.INFERRED) { optionButton.setText("Inferred"); } else { throw new RuntimeException("oops"); }/* w ww . ja v a2s . co m*/ optionButton.setUserData(option); optionButton.setTooltip( new Tooltip("Default StatedInferredOption is " + getDefaultStatedInferredOption())); statedInferredToggleGroup.getToggles().add(optionButton); statedInferredToggleGroupVBox.getChildren().add(optionButton); statedInferredOptionButtons.add(optionButton); } statedInferredToggleGroup.selectedToggleProperty().addListener(new ChangeListener<Toggle>() { @Override public void changed(ObservableValue<? extends Toggle> observable, Toggle oldValue, Toggle newValue) { currentStatedInferredOptionProperty.set((StatedInferredOptions) newValue.getUserData()); } }); //Path Combo Box pathComboBox.setCellFactory(new Callback<ListView<UUID>, ListCell<UUID>>() { @Override public ListCell<UUID> call(ListView<UUID> param) { final ListCell<UUID> cell = new ListCell<UUID>() { @Override protected void updateItem(UUID c, boolean emptyRow) { super.updateItem(c, emptyRow); if (c == null) { setText(null); } else { String desc = OTFUtility.getDescription(c); setText(desc); } } }; return cell; } }); pathComboBox.setButtonCell(new ListCell<UUID>() { // Don't know why this should be necessary, but without this the UUID itself is displayed @Override protected void updateItem(UUID c, boolean emptyRow) { super.updateItem(c, emptyRow); if (emptyRow) { setText(""); } else { String desc = OTFUtility.getDescription(c); setText(desc); } } }); pathComboBox.setOnAction((event) -> { if (!pathComboFirstRun) { UUID selectedPath = pathComboBox.getSelectionModel().getSelectedItem(); if (selectedPath != null) { int path = OTFUtility.getConceptVersion(selectedPath).getPathNid(); StampBdb stampDb = Bdb.getStampDb(); NidSet nidSet = new NidSet(); nidSet.add(path); //TODO: Make this multi-threaded and possibly implement setTimeOptions() here also NidSetBI stamps = stampDb.getSpecifiedStamps(nidSet, Long.MIN_VALUE, Long.MAX_VALUE); pathDatesList.clear(); // disableTimeCombo(true); timeSelectCombo.setValue(Long.MAX_VALUE); for (Integer thisStamp : stamps.getAsSet()) { try { Position stampPosition = stampDb.getPosition(thisStamp); this.stampDate = new Date(stampPosition.getTime()); stampDateInstant = stampDate.toInstant().atZone(ZoneId.systemDefault()) .toLocalDate(); this.pathDatesList.add(stampDateInstant); //Build DatePicker } catch (Exception e) { e.printStackTrace(); } } datePicker.setValue(LocalDate.now()); } } else { pathComboFirstRun = false; } }); pathComboBox.setTooltip( new Tooltip("Default path is \"" + OTFUtility.getDescription(getDefaultPath()) + "\"")); //Calendar Date Picker final Callback<DatePicker, DateCell> dayCellFactory = new Callback<DatePicker, DateCell>() { @Override public DateCell call(final DatePicker datePicker) { return new DateCell() { @Override public void updateItem(LocalDate thisDate, boolean empty) { super.updateItem(thisDate, empty); if (pathDatesList != null) { if (pathDatesList.contains(thisDate)) { setDisable(false); } else { setDisable(true); } } } }; } }; datePicker.setDayCellFactory(dayCellFactory); datePicker.setOnAction((event) -> { if (!datePickerFirstRun) { UUID selectedPath = pathComboBox.getSelectionModel().getSelectedItem(); Instant instant = Instant.from(datePicker.getValue().atStartOfDay(ZoneId.systemDefault())); Long dateSelected = Date.from(instant).getTime(); if (selectedPath != null && dateSelected != 0) { int path = OTFUtility.getConceptVersion(selectedPath).getPathNid(); setTimeOptions(path, dateSelected); try { timeSelectCombo.setValue(times.first()); //Default Dropdown Value } catch (Exception e) { // Eat it.. like a sandwich! TODO: Create Read Only Property Conditional for checking if Time Combo is disabled // Right now, Sometimes Time Combo is disabled, so we catch this and eat it // Otherwise make a conditional from the Read Only Boolean Property to check first } } else { disableTimeCombo(false); logger.debug("The path isn't set or the date isn't set. Both are needed right now"); } } else { datePickerFirstRun = false; } }); //Commit-Time ComboBox timeSelectCombo.setMinWidth(200); timeSelectCombo.setCellFactory(new Callback<ListView<Long>, ListCell<Long>>() { @Override public ListCell<Long> call(ListView<Long> param) { final ListCell<Long> cell = new ListCell<Long>() { @Override protected void updateItem(Long item, boolean emptyRow) { super.updateItem(item, emptyRow); if (item == null) { setText(""); } else { if (item == Long.MAX_VALUE) { setText("LATEST TIME"); } else { setText(timeFormatter.format(new Date(item))); } } } }; return cell; } }); timeSelectCombo.setButtonCell(new ListCell<Long>() { @Override protected void updateItem(Long item, boolean emptyRow) { super.updateItem(item, emptyRow); if (item == null) { setText(""); } else { if (item == Long.MAX_VALUE) { setText("LATEST TIME"); } else { setText(timeFormatter.format(new Date(item))); } } } }); try { currentPathProperty.bind(pathComboBox.getSelectionModel().selectedItemProperty()); //Set Path Property currentTimeProperty.bind(timeSelectCombo.getSelectionModel().selectedItemProperty()); } catch (Exception e) { e.printStackTrace(); } // DEFAULT VALUES UserProfile loggedIn = ExtendedAppContext.getCurrentlyLoggedInUserProfile(); storedTimePref = loggedIn.getViewCoordinateTime(); storedPathPref = loggedIn.getViewCoordinatePath(); if (storedPathPref != null) { pathComboBox.getItems().clear(); //Set the path Dates by default pathComboBox.getItems().addAll(getPathOptions()); final UUID storedPath = getStoredPath(); if (storedPath != null) { pathComboBox.getSelectionModel().select(storedPath); } if (storedTimePref != null) { final Long storedTime = loggedIn.getViewCoordinateTime(); Calendar cal = Calendar.getInstance(); cal.setTime(new Date(storedTime)); cal.set(Calendar.MILLISECOND, 0); //Strip milliseconds Long storedTruncTime = cal.getTimeInMillis(); if (!storedTime.equals(Long.MAX_VALUE)) { //***** FIX THIS, not checking default vc time value int path = OTFUtility.getConceptVersion(storedPathPref).getPathNid(); setTimeOptions(path, storedTimePref); timeSelectCombo.setValue(storedTruncTime); // timeSelectCombo.getItems().addAll(getTimeOptions()); //The correct way, but doesen't work Date storedDate = new Date(storedTime); datePicker.setValue(storedDate.toInstant().atZone(ZoneId.systemDefault()).toLocalDate()); } else { datePicker.setValue(LocalDate.now()); timeSelectCombo.getItems().addAll(Long.MAX_VALUE); //The correct way, but doesen't work timeSelectCombo.setValue(Long.MAX_VALUE); // disableTimeCombo(false); } } else { //Stored Time Pref == null logger.error("ERROR: Stored Time Preference = null"); } } else { //Stored Path Pref == null logger.error("We could not load a stored path, ISAAC cannot run"); throw new Error("No stored PATH could be found. ISAAC can't run without a path"); } GridPane gridPane = new GridPane(); gridPane.setHgap(10); gridPane.setVgap(10); Label pathLabel = new Label("View Coordinate Path"); gridPane.add(pathLabel, 0, 0); //Path Label - Row 0 GridPane.setHalignment(pathLabel, HPos.LEFT); gridPane.add(statedInferredToggleGroupVBox, 1, 0, 1, 2); //--Row 0, span 2 gridPane.add(pathComboBox, 0, 1); //Path Combo box - Row 2 GridPane.setValignment(pathComboBox, VPos.TOP); Label datePickerLabel = new Label("View Coordinate Dates"); gridPane.add(datePickerLabel, 0, 2); //Row 3 GridPane.setHalignment(datePickerLabel, HPos.LEFT); gridPane.add(datePicker, 0, 3); //Row 4 Label timeSelectLabel = new Label("View Coordinate Times"); gridPane.add(timeSelectLabel, 1, 2); //Row 3 GridPane.setHalignment(timeSelectLabel, HPos.LEFT); gridPane.add(timeSelectCombo, 1, 3); //Row 4 // FOR DEBUGGING CURRENTLY SELECTED PATH, TIME AND POLICY /* UserProfile userProfile = ExtendedAppContext.getCurrentlyLoggedInUserProfile(); StatedInferredOptions chosenPolicy = userProfile.getStatedInferredPolicy(); UUID chosenPathUuid = userProfile.getViewCoordinatePath(); Long chosenTime = userProfile.getViewCoordinateTime(); Label printSelectedPathLabel = new Label("Path: " + OTFUtility.getDescription(chosenPathUuid)); gridPane.add(printSelectedPathLabel, 0, 4); GridPane.setHalignment(printSelectedPathLabel, HPos.LEFT); Label printSelectedTimeLabel = null; if(chosenTime != getDefaultTime()) { printSelectedTimeLabel = new Label("Time: " + dateFormat.format(new Date(chosenTime))); } else { printSelectedTimeLabel = new Label("Time: LONG MAX VALUE"); } gridPane.add(printSelectedTimeLabel, 1, 4); GridPane.setHalignment(printSelectedTimeLabel, HPos.LEFT); Label printSelectedPolicyLabel = new Label("Policy: " + chosenPolicy); gridPane.add(printSelectedPolicyLabel, 2, 4); GridPane.setHalignment(printSelectedPolicyLabel, HPos.LEFT); */ hBox = new HBox(); hBox.getChildren().addAll(gridPane); allValid_ = new ValidBooleanBinding() { { bind(currentStatedInferredOptionProperty, currentPathProperty, currentTimeProperty); setComputeOnInvalidate(true); } @Override protected boolean computeValue() { if (currentStatedInferredOptionProperty.get() == null) { this.setInvalidReason("Null/unset/unselected StatedInferredOption"); for (RadioButton button : statedInferredOptionButtons) { TextErrorColorHelper.setTextErrorColor(button); } return false; } else { for (RadioButton button : statedInferredOptionButtons) { TextErrorColorHelper.clearTextErrorColor(button); } } if (currentPathProperty.get() == null) { this.setInvalidReason("Null/unset/unselected path"); TextErrorColorHelper.setTextErrorColor(pathComboBox); return false; } else { TextErrorColorHelper.clearTextErrorColor(pathComboBox); } if (OTFUtility.getConceptVersion(currentPathProperty.get()) == null) { this.setInvalidReason("Invalid path"); TextErrorColorHelper.setTextErrorColor(pathComboBox); return false; } else { TextErrorColorHelper.clearTextErrorColor(pathComboBox); } // if(currentTimeProperty.get() == null && currentTimeProperty.get() != Long.MAX_VALUE) // { // this.setInvalidReason("View Coordinate Time is unselected"); // TextErrorColorHelper.setTextErrorColor(timeSelectCombo); // return false; // } this.clearInvalidReason(); return true; } }; } // createButton.disableProperty().bind(saveButtonValid.not())); // Reload persisted values every time final StatedInferredOptions storedStatedInferredOption = getStoredStatedInferredOption(); for (Toggle toggle : statedInferredToggleGroup.getToggles()) { if (toggle.getUserData() == storedStatedInferredOption) { toggle.setSelected(true); } } // pathComboBox.setButtonCell(new ListCell<UUID>() { // @Override // protected void updateItem(UUID c, boolean emptyRow) { // super.updateItem(c, emptyRow); // if (emptyRow) { // setText(""); // } else { // String desc = OTFUtility.getDescription(c); // setText(desc); // } // } // }); // timeSelectCombo.setButtonCell(new ListCell<Long>() { // @Override // protected void updateItem(Long item, boolean emptyRow) { // super.updateItem(item, emptyRow); // if (emptyRow) { // setText(""); // } else { // setText(timeFormatter.format(new Date(item))); // } // } // }); // datePickerFirstRun = false; // pathComboFirstRun = false; return hBox; }
From source file:snpviewer.SnpViewer.java
public void refreshView(String chrom, boolean forceRedraw) { //if forceRedraw is false look for existing png files for each snpFile if (chrom == null) { /*if null is passed then select/reselect chromosome from * chromosomeSelector, return and let chromosomeSelector's * listener refire this method/*from www . j a va 2s . c o m*/ */ if (chromosomeSelector.getSelectionModel().isEmpty()) { chromosomeSelector.getSelectionModel().selectFirst(); } else { int sel = chromosomeSelector.getSelectionModel().getSelectedIndex(); chromosomeSelector.getSelectionModel().clearSelection(); chromosomeSelector.getSelectionModel().select(sel); } return; } int totalFiles = affFiles.size() + unFiles.size(); if (totalFiles < 1) { return; } ArrayList<Pane> panesToAdd = new ArrayList<>(); ArrayList<ScrollPane> labelsToAdd = new ArrayList<>(); clearSplitPanes(); setProgressMode(true); nextChromMenu.setDisable(false); nextChromMenu.setDisable(false); for (final SnpFile f : affFiles) { Pane sPane = new Pane(); sPane.setMinHeight(chromSplitPane.getHeight() / totalFiles); sPane.setMinWidth(chromSplitPane.getWidth()); sPane.setVisible(true); panesToAdd.add(sPane); ScrollPane labelPane = new ScrollPane(); Label fileLabel = new Label(f.inputFile.getName() + "\n(Affected)"); fileLabel.setTextFill(Color.WHITE); labelPane.setMinHeight(labelSplitPane.getHeight() / totalFiles); labelPane.setPrefWidth(labelSplitPane.getWidth()); labelPane.minHeightProperty().bind(labelSplitPane.heightProperty().divide(totalFiles)); VBox vbox = new VBox(); vbox.setSpacing(10); vbox.getChildren().add(fileLabel); final TextField textField = new TextField(); textField.setStyle("-fx-text-fill: white; -fx-background-color: " + "rgba(90%,90%,90%,0.3); -fx-border-color:white"); textField.setPromptText("Sample Name"); if (f.getSampleName() != null) { textField.setText(f.getSampleName()); } textField.setFocusTraversable(true); textField.setOnKeyPressed(new EventHandler<KeyEvent>() { @Override public void handle(KeyEvent ke) { if (ke.getCode().equals(KeyCode.ENTER)) { if (!textField.getText().isEmpty()) { String name = textField.getText().trim(); if (name.length() > 0) { f.setSampleName(name); } textField.getParent().requestFocus(); saveProject(); } } } }); textField.focusedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (!textField.isFocused()) { if (!textField.getText().isEmpty()) { String name = textField.getText().trim(); if (name.length() > 0) { f.setSampleName(name); } saveProject(); } } } }); vbox.getChildren().add(textField); Label noCalls = new Label(); if (f.getPercentNoCall() != null) { noCalls.setText("No Calls: " + DecimalFormat.getInstance().format(f.getPercentNoCall()) + " %"); } else { noCalls.setText("No Calls: none"); } Label meanQual = new Label(); if (f.getMeanQuality() != null) { meanQual.setText("Av. Call Conf: " + DecimalFormat.getInstance().format(100 - (f.getMeanQuality() * 100)) + " %"); } else { meanQual.setText("No Call Confidence Data"); } vbox.getChildren().add(noCalls); vbox.getChildren().add(meanQual); labelPane.setContent(vbox); // labelPane.getChildren().add(fileLabel); // labelPane.getChildren().add(new TextField()); labelsToAdd.add(labelPane); } for (final SnpFile f : unFiles) { Pane sPane = new Pane(); sPane.setMinHeight(chromSplitPane.getHeight() / totalFiles); sPane.setMinWidth(chromSplitPane.getWidth()); sPane.setVisible(true); panesToAdd.add(sPane); ScrollPane labelPane = new ScrollPane(); Label fileLabel = new Label(f.inputFile.getName() + "\n(Unaffected)"); fileLabel.setStyle("-fx-text-fill: black"); labelPane.setMinHeight(labelSplitPane.getHeight() / totalFiles); labelPane.setPrefWidth(labelSplitPane.getWidth()); labelPane.minHeightProperty().bind(labelSplitPane.heightProperty().divide(totalFiles)); VBox vbox = new VBox(); vbox.setSpacing(10); vbox.getChildren().add(fileLabel); final TextField textField = new TextField(); textField.setStyle("-fx-text-fill: black; " + "-fx-background-color: rgba(90%,90%,90%,0.3);" + " -fx-border-color:white"); textField.setPromptText("Sample Name"); if (f.getSampleName() != null) { textField.setText(f.getSampleName()); } textField.setFocusTraversable(true); textField.setOnKeyPressed(new EventHandler<KeyEvent>() { @Override public void handle(KeyEvent ke) { if (ke.getCode().equals(KeyCode.ENTER)) { if (!textField.getText().isEmpty()) { f.setSampleName(textField.getText()); textField.getParent().requestFocus(); saveProject(); } } } }); textField.focusedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (!textField.isFocused()) { if (!textField.getText().isEmpty()) { f.setSampleName(textField.getText()); saveProject(); } } } }); vbox.getChildren().add(textField); Label noCalls = new Label(); if (f.getPercentNoCall() != null) { noCalls.setText("No Calls: " + DecimalFormat.getInstance().format(f.getPercentNoCall()) + " %"); } else { noCalls.setText("No Calls: none"); } Label meanQual = new Label(); if (f.getMeanQuality() != null) { meanQual.setText("Av. Call Conf: " + DecimalFormat.getInstance().format(100 - (f.getMeanQuality() * 100)) + " %"); } else { meanQual.setText("No Call Confidence Data"); } vbox.getChildren().add(noCalls); vbox.getChildren().add(meanQual); labelPane.setContent(vbox); // labelPane.getChildren().add(fileLabel); labelsToAdd.add(labelPane); } if (panesToAdd.size() > 0) { chromSplitPane.getItems().addAll(panesToAdd); labelSplitPane.getItems().addAll(labelsToAdd); ArrayList<SnpFile> bothFiles = new ArrayList<>(affFiles); bothFiles.addAll(unFiles); final Iterator<SnpFile> fileIter = bothFiles.iterator(); final Iterator<Pane> paneIter = panesToAdd.iterator(); SnpFile firstFileToProcess = fileIter.next(); Pane firstPaneToProcess = paneIter.next(); String pngPath = null; if (qualityFilter != null) { Integer percent = new Integer(100 - (int) (qualityFilter * 100)); pngPath = percent.toString(); } drawWithIterator(firstFileToProcess, firstPaneToProcess, pngPath, fileIter, paneIter, 1, totalFiles, chrom, forceRedraw, chromSplitPane); } else { setProgressMode(false); } }