Example usage for javafx.scene.layout BorderPane setBottom

List of usage examples for javafx.scene.layout BorderPane setBottom

Introduction

In this page you can find the example usage for javafx.scene.layout BorderPane setBottom.

Prototype

public final void setBottom(Node value) 

Source Link

Usage

From source file:Main.java

@Override
public void start(Stage primaryStage) {
    final Label label = new Label("Progress:");
    final ProgressBar progressBar = new ProgressBar(0);
    final ProgressIndicator progressIndicator = new ProgressIndicator(0);

    final Button startButton = new Button("Start");
    final Button cancelButton = new Button("Cancel");
    final TextArea textArea = new TextArea();

    startButton.setOnAction((ActionEvent event) -> {
        startButton.setDisable(true);/* w w  w  .ja v a2  s .  co m*/

        progressBar.setProgress(0);
        progressIndicator.setProgress(0);

        textArea.setText("");
        cancelButton.setDisable(false);

        copyWorker = createWorker(numFiles);

        progressBar.progressProperty().unbind();
        progressBar.progressProperty().bind(copyWorker.progressProperty());
        progressIndicator.progressProperty().unbind();
        progressIndicator.progressProperty().bind(copyWorker.progressProperty());

        copyWorker.messageProperty().addListener(
                (ObservableValue<? extends String> observable, String oldValue, String newValue) -> {
                    textArea.appendText(newValue + "\n");
                });

        new Thread(copyWorker).start();
    });

    cancelButton.setOnAction((ActionEvent event) -> {
        startButton.setDisable(false);
        cancelButton.setDisable(true);
        copyWorker.cancel(true);

        progressBar.progressProperty().unbind();
        progressBar.setProgress(0);
        progressIndicator.progressProperty().unbind();
        progressIndicator.setProgress(0);
        textArea.appendText("File transfer was cancelled.");
    });

    BorderPane root = new BorderPane();
    Scene scene = new Scene(root, 500, 250, javafx.scene.paint.Color.WHITE);

    FlowPane topPane = new FlowPane(5, 5);
    topPane.setPadding(new Insets(5));
    topPane.setAlignment(Pos.CENTER);
    topPane.getChildren().addAll(label, progressBar, progressIndicator);

    GridPane middlePane = new GridPane();
    middlePane.setPadding(new Insets(5));
    middlePane.setHgap(20);
    middlePane.setVgap(20);
    ColumnConstraints column1 = new ColumnConstraints(300, 400, Double.MAX_VALUE);
    middlePane.getColumnConstraints().addAll(column1);
    middlePane.setAlignment(Pos.CENTER);
    middlePane.add(textArea, 0, 0);

    FlowPane bottomPane = new FlowPane(5, 5);
    bottomPane.setPadding(new Insets(5));
    bottomPane.setAlignment(Pos.CENTER);
    bottomPane.getChildren().addAll(startButton, cancelButton);

    root.setTop(topPane);
    root.setCenter(middlePane);
    root.setBottom(bottomPane);

    primaryStage.setScene(scene);
    primaryStage.show();
}

From source file:Main.java

@Override
public void start(Stage stage) {
    BorderPane root = new BorderPane();

    Pane parentContainer = new Pane();
    parentContainer.setPrefSize(500, 500);
    parentContainer.setPickOnBounds(false);

    //Pane parent = new Pane();
    Group parent = new Group();
    boundsLayoutNode = parent;/* w ww  .j a va 2  s .co  m*/
    //parent.setPrefSize(300, 200);
    parent.setLayoutX(200);
    parent.setLayoutY(200);
    parent.setStyle("-fx-background-color:white;");
    parent.getChildren().addAll(new Group(localXAxisGroup, localYAxisGroup),
            new Group(parentXAxisGroup, parentYAxisGroup),
            new Group(parentBoundsRect, PARENT_BOUNDS_PATH_CIRCLE),
            new Group(localBoundsRect, LOCAL_BOUNDS_PATH_CIRCLE),
            new Group(layoutBoundsRect, LAYOUT_BOUNDS_PATH_CIRCLE), new Group(mainRect));

    parentContainer.getChildren().addAll(parent);

    VBox transformsControls = getTransformationControls();
    VBox resultsControls = getResultsControls();

    BorderPane nestedPane = new BorderPane();
    nestedPane.setCenter(parentContainer);
    nestedPane.setBottom(resultsControls);
    //nestedPane.setTop(printDataTextArea);
    //printDataTextArea.setPrefColumnCount(40);
    //printDataTextArea.setPrefRowCount(3);
    root.setCenter(nestedPane);

    root.setRight(transformsControls);
    //root.setBottom(resultsControls);
    //root.setCenter(parentContainer);

    // Attach event handlers
    attachEventHandlers();

    Scene scene = new Scene(root); //, 600, 400);
    stage.setScene(scene);
    stage.setTitle("Bounds of a Node");
    Rectangle2D visualBounds = Screen.getPrimary().getVisualBounds();
    stage.setX(visualBounds.getMinX());
    stage.setY(visualBounds.getMinY());
    stage.setWidth(visualBounds.getWidth());
    stage.setHeight(visualBounds.getHeight());
    stage.show();

    // Make sure everything is in sync
    relayout();
}

From source file:ijfx.ui.canvas.FxCanvasTester.java

@Override
public void start(Stage primaryStage) {

    final SCIFIO scifio = new SCIFIO();
    MenuBar menuBar = new MenuBar();
    InputControl parameterInput = null;/*from w  w w.  j  a  va 2 s  . com*/
    try {
        System.setProperty("imagej.legacy.sync", "true");
        //reader.getContext().inject(this);
        ImageJ imagej = new ImageJ();
        context = imagej.getContext();
        CommandInfo command = imagej.command().getCommand(GaussianBlur.class);

        CommandModuleItem input = command.getInput("sigma");
        Class<?> type = input.getType();
        if (type == double.class) {
            type = Double.class;
        }

        context.inject(this);

        GaussianBlur module = new GaussianBlur();

        imagej.ui().showUI();

        //reader = scifio.initializer().initializeReader("./stack.tif");
        commandService.run(OpenFile.class, true, new HashMap<String, Object>());

        menuBar = new MenuBar();
        menuService.createMenus(new FxMenuCreator(), menuBar);
        ObjectMapper mapper = new ObjectMapper();
        SimpleModule simpleModule = new SimpleModule("ModuleSerializer");
        // simpleModule.addSerializer(ModuleItem<?>.class,new ModuleItemSerializer());
        simpleModule.addSerializer(ModuleInfo.class, new ModuleSerializer());
        simpleModule.addSerializer(ModuleItem.class, new ModuleItemSerializer());
        mapper.configure(DeserializationFeature.UNWRAP_ROOT_VALUE, true);
        mapper.enable(SerializationFeature.INDENT_OUTPUT);
        mapper.registerModule(simpleModule);

        mapper.writeValue(new File("modules.json"), moduleService.getModules());

    } catch (Exception ex) {
        ImageJFX.getLogger();
    }

    //imageView.fitImageToScreen();
    Button reset = new Button("Reset");

    reset.setOnAction(event -> update());

    BorderPane pane = new BorderPane();

    Button test = new Button("Test");

    AnchorPane root = new AnchorPane();
    root.getChildren().add(pane);
    root.getStylesheets().add(ArcMenu.class.getResource("arc-default.css").toExternalForm());
    root.getStylesheets().add(ImageJFX.class.getResource(("flatterfx.css")).toExternalForm());
    AnchorPane.setTopAnchor(pane, 0.0);
    AnchorPane.setBottomAnchor(pane, 0.0);
    AnchorPane.setLeftAnchor(pane, 0.0);
    AnchorPane.setRightAnchor(pane, 0.0);
    pane.setTop(menuBar);

    HBox vbox = new HBox();
    vbox.getChildren().addAll(reset, test, parameterInput);
    vbox.setSpacing(10);
    vbox.setPadding(new Insets(10, 10, 10, 10));
    // update();
    pane.setCenter(ImageWindowContainer.getInstance());
    // pane.setPrefSize(Region.USE_PREF_SIZE, Region.USE_PREF_SIZE);
    pane.setBottom(vbox);

    Scene scene = new Scene(root, 600, 600);

    test.setOnAction(event -> {

        test();
    });

    primaryStage.setTitle("ImageCanvasTest");
    primaryStage.setScene(scene);
    primaryStage.show();
}

From source file:qupath.lib.gui.tma.TMASummaryViewer.java

private Pane getCustomizeTablePane() {
    TableView<TreeTableColumn<TMAEntry, ?>> tableColumns = new TableView<>();
    tableColumns.setPlaceholder(new Text("No columns available"));
    tableColumns.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE);
    tableColumns.setColumnResizePolicy(TableView.CONSTRAINED_RESIZE_POLICY);

    SortedList<TreeTableColumn<TMAEntry, ?>> sortedColumns = new SortedList<>(
            table.getColumns().filtered(p -> !p.getText().trim().isEmpty()));
    sortedColumns.setComparator((c1, c2) -> c1.getText().compareTo(c2.getText()));
    tableColumns.setItems(sortedColumns);
    sortedColumns.comparatorProperty().bind(tableColumns.comparatorProperty());
    //      sortedColumns.comparatorProperty().bind(tableColumns.comparatorProperty());

    TableColumn<TreeTableColumn<TMAEntry, ?>, String> columnName = new TableColumn<>("Column");
    columnName.setCellValueFactory(v -> v.getValue().textProperty());
    TableColumn<TreeTableColumn<TMAEntry, ?>, Boolean> columnVisible = new TableColumn<>("Visible");
    columnVisible.setCellValueFactory(v -> v.getValue().visibleProperty());
    //      columnVisible.setCellValueFactory(col -> {
    //         SimpleBooleanProperty prop = new SimpleBooleanProperty(col.getValue().isVisible());
    //         prop.addListener((v, o, n) -> col.getValue().setVisible(n));
    //         return prop;
    //      });//w  w  w .j av  a 2  s .  co m
    tableColumns.setEditable(true);
    columnVisible.setCellFactory(v -> new CheckBoxTableCell<>());
    tableColumns.getColumns().add(columnName);
    tableColumns.getColumns().add(columnVisible);
    ContextMenu contextMenu = new ContextMenu();

    Action actionShowSelected = new Action("Show selected", e -> {
        for (TreeTableColumn<?, ?> col : tableColumns.getSelectionModel().getSelectedItems()) {
            if (col != null)
                col.setVisible(true);
            else {
                // Not sure why this happens...?
                logger.trace("Selected column is null!");
            }
        }
    });

    Action actionHideSelected = new Action("Hide selected", e -> {
        for (TreeTableColumn<?, ?> col : tableColumns.getSelectionModel().getSelectedItems()) {
            if (col != null)
                col.setVisible(false);
            else {
                // Not sure why this happens...?
                logger.trace("Selected column is null!");
            }
        }
    });

    contextMenu.getItems().addAll(ActionUtils.createMenuItem(actionShowSelected),
            ActionUtils.createMenuItem(actionHideSelected));
    tableColumns.setContextMenu(contextMenu);
    tableColumns.setTooltip(
            new Tooltip("Show or hide table columns - right-click to change multiple columns at once"));

    BorderPane paneColumns = new BorderPane(tableColumns);
    paneColumns.setBottom(PanelToolsFX.createColumnGridControls(ActionUtils.createButton(actionShowSelected),
            ActionUtils.createButton(actionHideSelected)));

    VBox paneRows = new VBox();

    // Create a box to filter on some metadata text
    ComboBox<String> comboMetadata = new ComboBox<>();
    comboMetadata.setItems(metadataNames);
    comboMetadata.getSelectionModel().getSelectedItem();
    comboMetadata.setPromptText("Select column");
    TextField tfFilter = new TextField();
    CheckBox cbExact = new CheckBox("Exact");
    // Set listeners
    cbExact.selectedProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));
    tfFilter.textProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));
    comboMetadata.getSelectionModel().selectedItemProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));

    GridPane paneMetadata = new GridPane();
    paneMetadata.add(comboMetadata, 0, 0);
    paneMetadata.add(tfFilter, 1, 0);
    paneMetadata.add(cbExact, 2, 0);
    paneMetadata.setPadding(new Insets(10, 10, 10, 10));
    paneMetadata.setVgap(2);
    paneMetadata.setHgap(5);
    comboMetadata.setMaxWidth(Double.MAX_VALUE);
    GridPane.setHgrow(tfFilter, Priority.ALWAYS);
    GridPane.setFillWidth(comboMetadata, Boolean.TRUE);
    GridPane.setFillWidth(tfFilter, Boolean.TRUE);

    TitledPane tpMetadata = new TitledPane("Metadata filter", paneMetadata);
    tpMetadata.setExpanded(false);
    //      tpMetadata.setCollapsible(false);
    Tooltip tooltipMetadata = new Tooltip(
            "Enter text to filter entries according to a selected metadata column");
    Tooltip.install(paneMetadata, tooltipMetadata);
    tpMetadata.setTooltip(tooltipMetadata);
    paneRows.getChildren().add(tpMetadata);

    // Add measurement predicate
    TextField tfCommand = new TextField();
    tfCommand.setTooltip(new Tooltip("Predicate used to filter entries for inclusion"));

    TextFields.bindAutoCompletion(tfCommand, e -> {
        int ind = tfCommand.getText().lastIndexOf("\"");
        if (ind < 0)
            return Collections.emptyList();
        String part = tfCommand.getText().substring(ind + 1);
        return measurementNames.stream().filter(n -> n.startsWith(part)).map(n -> "\"" + n + "\" ")
                .collect(Collectors.toList());
    });

    String instructions = "Enter a predicate to filter entries.\n"
            + "Only entries passing the test will be included in any results.\n"
            + "Examples of predicates include:\n" + "    \"Num Tumor\" > 200\n"
            + "    \"Num Tumor\" > 100 && \"Num Stroma\" < 1000";
    //      labelInstructions.setTooltip(new Tooltip("Note: measurement names must be in \"inverted commands\" and\n" + 
    //            "&& indicates 'and', while || indicates 'or'."));

    BorderPane paneMeasurementFilter = new BorderPane(tfCommand);
    Label label = new Label("Predicate: ");
    label.setAlignment(Pos.CENTER);
    label.setMaxHeight(Double.MAX_VALUE);
    paneMeasurementFilter.setLeft(label);

    Button btnApply = new Button("Apply");
    btnApply.setOnAction(e -> {
        TablePredicate predicateNew = new TablePredicate(tfCommand.getText());
        if (predicateNew.isValid()) {
            predicateMeasurements.set(predicateNew);
        } else {
            DisplayHelpers.showErrorMessage("Invalid predicate",
                    "Current predicate '" + tfCommand.getText() + "' is invalid!");
        }
        e.consume();
    });
    TitledPane tpMeasurementFilter = new TitledPane("Measurement filter", paneMeasurementFilter);
    tpMeasurementFilter.setExpanded(false);
    Tooltip tooltipInstructions = new Tooltip(instructions);
    tpMeasurementFilter.setTooltip(tooltipInstructions);
    Tooltip.install(paneMeasurementFilter, tooltipInstructions);
    paneMeasurementFilter.setRight(btnApply);

    paneRows.getChildren().add(tpMeasurementFilter);

    logger.info("Predicate set to: {}", predicateMeasurements.get());

    VBox pane = new VBox();
    //      TitledPane tpColumns = new TitledPane("Select column", paneColumns);
    //      tpColumns.setMaxHeight(Double.MAX_VALUE);
    //      tpColumns.setCollapsible(false);
    pane.getChildren().addAll(paneColumns, new Separator(), paneRows);
    VBox.setVgrow(paneColumns, Priority.ALWAYS);

    return pane;
}

From source file:qupath.lib.gui.tma.TMASummaryViewer.java

private void initialize() {

    model = new TMATableModel();

    groupByIDProperty.addListener((v, o, n) -> refreshTableData());

    MenuBar menuBar = new MenuBar();
    Menu menuFile = new Menu("File");
    MenuItem miOpen = new MenuItem("Open...");
    miOpen.setAccelerator(new KeyCodeCombination(KeyCode.O, KeyCombination.SHORTCUT_DOWN));
    miOpen.setOnAction(e -> {//from  w  w  w  . j a  va  2 s  . c o m
        File file = QuPathGUI.getDialogHelper(stage).promptForFile(null, null, "TMA data files",
                new String[] { "qptma" });
        if (file == null)
            return;
        setInputFile(file);
    });

    MenuItem miSave = new MenuItem("Save As...");
    miSave.setAccelerator(
            new KeyCodeCombination(KeyCode.S, KeyCombination.SHORTCUT_DOWN, KeyCombination.SHIFT_DOWN));
    miSave.setOnAction(
            e -> SummaryMeasurementTableCommand.saveTableModel(model, null, Collections.emptyList()));

    MenuItem miImportFromImage = new MenuItem("Import from current image...");
    miImportFromImage.setAccelerator(
            new KeyCodeCombination(KeyCode.I, KeyCombination.SHORTCUT_DOWN, KeyCombination.SHIFT_DOWN));
    miImportFromImage.setOnAction(e -> setTMAEntriesFromOpenImage());

    MenuItem miImportFromProject = new MenuItem("Import from current project... (experimental)");
    miImportFromProject.setAccelerator(
            new KeyCodeCombination(KeyCode.P, KeyCombination.SHORTCUT_DOWN, KeyCombination.SHIFT_DOWN));
    miImportFromProject.setOnAction(e -> setTMAEntriesFromOpenProject());

    MenuItem miImportClipboard = new MenuItem("Import from clipboard...");
    miImportClipboard.setOnAction(e -> {
        String text = Clipboard.getSystemClipboard().getString();
        if (text == null) {
            DisplayHelpers.showErrorMessage("Import scores", "Clipboard is empty!");
            return;
        }
        int n = importScores(text);
        if (n > 0) {
            setTMAEntries(new ArrayList<>(entriesBase));
        }
        DisplayHelpers.showMessageDialog("Import scores", "Number of scores imported: " + n);
    });

    Menu menuEdit = new Menu("Edit");
    MenuItem miCopy = new MenuItem("Copy table to clipboard");
    miCopy.setOnAction(e -> {
        SummaryMeasurementTableCommand.copyTableContentsToClipboard(model, Collections.emptyList());
    });

    combinedPredicate.addListener((v, o, n) -> {
        // We want any other changes triggered by this to have happened, 
        // so that the data has already been updated
        Platform.runLater(() -> handleTableContentChange());
    });

    // Reset the scores for missing cores - this ensures they will be NaN and not influence subsequent results
    MenuItem miResetMissingScores = new MenuItem("Reset scores for missing cores");
    miResetMissingScores.setOnAction(e -> {
        int changes = 0;
        for (TMAEntry entry : entriesBase) {
            if (!entry.isMissing())
                continue;
            boolean changed = false;
            for (String m : entry.getMeasurementNames().toArray(new String[0])) {
                if (!TMASummaryEntry.isSurvivalColumn(m) && !Double.isNaN(entry.getMeasurementAsDouble(m))) {
                    entry.putMeasurement(m, null);
                    changed = true;
                }
            }
            if (changed)
                changes++;
        }
        if (changes == 0) {
            logger.info("No changes made when resetting scores for missing cores!");
            return;
        }
        logger.info("{} change(s) made when resetting scores for missing cores!", changes);
        table.refresh();
        updateSurvivalCurves();
        if (scatterPane != null)
            scatterPane.updateChart();
        if (histogramDisplay != null)
            histogramDisplay.refreshHistogram();
    });
    menuEdit.getItems().add(miResetMissingScores);

    QuPathGUI.addMenuItems(menuFile, miOpen, miSave, null, miImportClipboard, null, miImportFromImage,
            miImportFromProject);
    menuBar.getMenus().add(menuFile);
    menuEdit.getItems().add(miCopy);
    menuBar.getMenus().add(menuEdit);

    menuFile.setOnShowing(e -> {
        boolean imageDataAvailable = QuPathGUI.getInstance() != null
                && QuPathGUI.getInstance().getImageData() != null
                && QuPathGUI.getInstance().getImageData().getHierarchy().getTMAGrid() != null;
        miImportFromImage.setDisable(!imageDataAvailable);
        boolean projectAvailable = QuPathGUI.getInstance() != null
                && QuPathGUI.getInstance().getProject() != null
                && !QuPathGUI.getInstance().getProject().getImageList().isEmpty();
        miImportFromProject.setDisable(!projectAvailable);
    });

    // Double-clicking previously used for comments... but conflicts with tree table expansion
    //      table.setOnMouseClicked(e -> {
    //         if (!e.isPopupTrigger() && e.getClickCount() > 1)
    //            promptForComment();
    //      });

    table.setPlaceholder(new Text("Drag TMA data folder onto window, or choose File -> Open"));
    table.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE);

    BorderPane pane = new BorderPane();
    pane.setTop(menuBar);
    menuBar.setUseSystemMenuBar(true);

    // Create options
    ToolBar toolbar = new ToolBar();
    Label labelMeasurementMethod = new Label("Combination method");
    labelMeasurementMethod.setLabelFor(comboMeasurementMethod);
    labelMeasurementMethod
            .setTooltip(new Tooltip("Method whereby measurements for multiple cores with the same "
                    + TMACoreObject.KEY_UNIQUE_ID + " will be combined"));

    CheckBox cbHidePane = new CheckBox("Hide pane");
    cbHidePane.setSelected(hidePaneProperty.get());
    cbHidePane.selectedProperty().bindBidirectional(hidePaneProperty);

    CheckBox cbGroupByID = new CheckBox("Group by ID");
    entriesBase.addListener((Change<? extends TMAEntry> event) -> {
        if (!event.getList().stream().anyMatch(e -> e.getMetadataValue(TMACoreObject.KEY_UNIQUE_ID) != null)) {
            cbGroupByID.setSelected(false);
            cbGroupByID.setDisable(true);
        } else {
            cbGroupByID.setDisable(false);
        }
    });
    cbGroupByID.setSelected(groupByIDProperty.get());
    cbGroupByID.selectedProperty().bindBidirectional(groupByIDProperty);

    CheckBox cbUseSelected = new CheckBox("Use selection only");
    cbUseSelected.selectedProperty().bindBidirectional(useSelectedProperty);

    CheckBox cbSkipMissing = new CheckBox("Hide missing cores");
    cbSkipMissing.selectedProperty().bindBidirectional(skipMissingCoresProperty);
    skipMissingCoresProperty.addListener((v, o, n) -> {
        table.refresh();
        updateSurvivalCurves();
        if (histogramDisplay != null)
            histogramDisplay.refreshHistogram();
        updateSurvivalCurves();
        if (scatterPane != null)
            scatterPane.updateChart();
    });

    toolbar.getItems().addAll(labelMeasurementMethod, comboMeasurementMethod,
            new Separator(Orientation.VERTICAL), cbHidePane, new Separator(Orientation.VERTICAL), cbGroupByID,
            new Separator(Orientation.VERTICAL), cbUseSelected, new Separator(Orientation.VERTICAL),
            cbSkipMissing);
    comboMeasurementMethod.getItems().addAll(MeasurementCombinationMethod.values());
    comboMeasurementMethod.getSelectionModel().select(MeasurementCombinationMethod.MEDIAN);
    selectedMeasurementCombinationProperty.addListener((v, o, n) -> table.refresh());

    ContextMenu popup = new ContextMenu();
    MenuItem miSetMissing = new MenuItem("Set missing");
    miSetMissing.setOnAction(e -> setSelectedMissingStatus(true));

    MenuItem miSetAvailable = new MenuItem("Set available");
    miSetAvailable.setOnAction(e -> setSelectedMissingStatus(false));

    MenuItem miExpand = new MenuItem("Expand all");
    miExpand.setOnAction(e -> {
        if (table.getRoot() == null)
            return;
        for (TreeItem<?> item : table.getRoot().getChildren()) {
            item.setExpanded(true);
        }
    });
    MenuItem miCollapse = new MenuItem("Collapse all");
    miCollapse.setOnAction(e -> {
        if (table.getRoot() == null)
            return;
        for (TreeItem<?> item : table.getRoot().getChildren()) {
            item.setExpanded(false);
        }
    });
    popup.getItems().addAll(miSetMissing, miSetAvailable, new SeparatorMenuItem(), miExpand, miCollapse);
    table.setContextMenu(popup);

    table.setRowFactory(e -> {
        TreeTableRow<TMAEntry> row = new TreeTableRow<>();

        //         // Make rows invisible if they don't pass the predicate
        //         row.visibleProperty().bind(Bindings.createBooleanBinding(() -> {
        //               TMAEntry entry = row.getItem();
        //               if (entry == null || (entry.isMissing() && skipMissingCoresProperty.get()))
        //                     return false;
        //               return entries.getPredicate() == null || entries.getPredicate().test(entry);
        //               },
        //               skipMissingCoresProperty,
        //               entries.predicateProperty()));

        // Style rows according to what they contain
        row.styleProperty().bind(Bindings.createStringBinding(() -> {
            if (row.isSelected())
                return "";
            TMAEntry entry = row.getItem();
            if (entry == null || entry instanceof TMASummaryEntry)
                return "";
            else if (entry.isMissing())
                return "-fx-background-color:rgb(225,225,232)";
            else
                return "-fx-background-color:rgb(240,240,245)";
        }, row.itemProperty(), row.selectedProperty()));
        //         row.itemProperty().addListener((v, o, n) -> {
        //            if (n == null || n instanceof TMASummaryEntry || row.isSelected())
        //               row.setStyle("");
        //            else if (n.isMissing())
        //               row.setStyle("-fx-background-color:rgb(225,225,232)");            
        //            else
        //               row.setStyle("-fx-background-color:rgb(240,240,245)");            
        //         });
        return row;
    });

    BorderPane paneTable = new BorderPane();
    paneTable.setTop(toolbar);
    paneTable.setCenter(table);

    MasterDetailPane mdTablePane = new MasterDetailPane(Side.RIGHT, paneTable, createSidePane(), true);

    mdTablePane.showDetailNodeProperty().bind(Bindings.createBooleanBinding(
            () -> !hidePaneProperty.get() && !entriesBase.isEmpty(), hidePaneProperty, entriesBase));
    mdTablePane.setDividerPosition(2.0 / 3.0);

    pane.setCenter(mdTablePane);

    model.getEntries().addListener(new ListChangeListener<TMAEntry>() {
        @Override
        public void onChanged(ListChangeListener.Change<? extends TMAEntry> c) {
            if (histogramDisplay != null)
                histogramDisplay.refreshHistogram();
            updateSurvivalCurves();
            if (scatterPane != null)
                scatterPane.updateChart();
        }
    });

    Label labelPredicate = new Label();
    labelPredicate.setPadding(new Insets(5, 5, 5, 5));
    labelPredicate.setAlignment(Pos.CENTER);
    //      labelPredicate.setStyle("-fx-background-color: rgba(20, 120, 20, 0.15);");
    labelPredicate.setStyle("-fx-background-color: rgba(120, 20, 20, 0.15);");

    labelPredicate.textProperty().addListener((v, o, n) -> {
        if (n.trim().length() > 0)
            pane.setBottom(labelPredicate);
        else
            pane.setBottom(null);
    });
    labelPredicate.setMaxWidth(Double.MAX_VALUE);
    labelPredicate.setMaxHeight(labelPredicate.getPrefHeight());
    labelPredicate.setTextAlignment(TextAlignment.CENTER);
    predicateMeasurements.addListener((v, o, n) -> {
        if (n == null)
            labelPredicate.setText("");
        else if (n instanceof TablePredicate) {
            TablePredicate tp = (TablePredicate) n;
            if (tp.getOriginalCommand().trim().isEmpty())
                labelPredicate.setText("");
            else
                labelPredicate.setText("Predicate: " + tp.getOriginalCommand());
        } else
            labelPredicate.setText("Predicate: " + n.toString());
    });
    //      predicate.set(new TablePredicate("\"Tumor\" > 100"));

    scene = new Scene(pane);

    scene.addEventHandler(KeyEvent.KEY_PRESSED, e -> {
        KeyCode code = e.getCode();
        if ((code == KeyCode.SPACE || code == KeyCode.ENTER) && entrySelected != null) {
            promptForComment();
            return;
        }
    });

}

From source file:gov.va.isaac.gui.refexViews.refexEdit.AddSememePopup.java

private AddSememePopup() {
    super();/*from w  w w . ja v  a 2s .  c  om*/
    BorderPane root = new BorderPane();

    VBox topItems = new VBox();
    topItems.setFillWidth(true);

    title_ = new Label("Create new sememe instance");
    title_.getStyleClass().add("titleLabel");
    title_.setAlignment(Pos.CENTER);
    title_.prefWidthProperty().bind(topItems.widthProperty());
    topItems.getChildren().add(title_);
    VBox.setMargin(title_, new Insets(10, 10, 10, 10));

    gp_ = new GridPane();
    gp_.setHgap(10.0);
    gp_.setVgap(10.0);
    VBox.setMargin(gp_, new Insets(5, 5, 5, 5));
    topItems.getChildren().add(gp_);

    Label referencedComponent = new Label("Referenced Component");
    referencedComponent.getStyleClass().add("boldLabel");
    gp_.add(referencedComponent, 0, 0);

    unselectableComponentLabel_ = new CopyableLabel();
    unselectableComponentLabel_.setWrapText(true);
    AppContext.getService(DragRegistry.class).setupDragOnly(unselectableComponentLabel_, () -> {
        if (editRefex_ == null) {
            return focusNid_ + "";
        } else {
            return Get.identifierService().getConceptNid(editRefex_.getSememe().getAssemblageSequence()) + "";
        }
    });
    //delay adding till we know which row

    Label assemblageConceptLabel = new Label("Assemblage Concept");
    assemblageConceptLabel.getStyleClass().add("boldLabel");
    gp_.add(assemblageConceptLabel, 0, 1);

    selectableConcept_ = new ConceptNode(null, true, refexDropDownOptions, null);

    selectableConcept_.getConceptProperty().addListener(new ChangeListener<ConceptSnapshot>() {
        @Override
        public void changed(ObservableValue<? extends ConceptSnapshot> observable, ConceptSnapshot oldValue,
                ConceptSnapshot newValue) {
            if (createRefexFocus_ != null && createRefexFocus_ == ViewFocus.REFERENCED_COMPONENT) {
                if (selectableConcept_.isValid().get()) {
                    //Its a valid concept, but is it a valid assemblage concept?
                    try {
                        assemblageInfo_ = DynamicSememeUsageDescription
                                .read(selectableConcept_.getConceptNoWait().getNid());
                        assemblageIsValid_.set(true);
                        if (assemblageInfo_.getReferencedComponentTypeRestriction() != null) {
                            String result = DynamicSememeValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(new DynamicSememeNid(focusNid_),
                                            new DynamicSememeString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null, null); //don't need coordinates for component type validator
                            if (result.length() > 0) {
                                selectableConcept_.isValid()
                                        .setInvalid("The selected assemblage requires the component type to be "
                                                + assemblageInfo_.getReferencedComponentTypeRestriction()
                                                        .toString()
                                                + ", which doesn't match the referenced component.");
                                logger_.info("The selected assemblage requires the component type to be "
                                        + assemblageInfo_.getReferencedComponentTypeRestriction().toString()
                                        + ", which doesn't match the referenced component.");
                                assemblageIsValid_.set(false);
                            }
                        }
                    } catch (Exception e) {
                        selectableConcept_.isValid().setInvalid(
                                "The selected concept is not properly constructed for use as an Assemblage concept");
                        logger_.info("Concept not a valid concept for a sememe assemblage", e);
                        assemblageIsValid_.set(false);
                    }
                } else {
                    assemblageInfo_ = null;
                    assemblageIsValid_.set(false);
                }
                buildDataFields(assemblageIsValid_.get(), null);
            }
        }
    });

    selectableComponent_ = new TextField();

    selectableComponentNodeValid_ = new ValidBooleanBinding() {
        {
            setComputeOnInvalidate(true);
            bind(selectableComponent_.textProperty());
            invalidate();
        }

        @Override
        protected boolean computeValue() {
            if (createRefexFocus_ != null && createRefexFocus_ == ViewFocus.ASSEMBLAGE
                    && !conceptNodeIsConceptType_) {
                //If the assembly nid was what was set - the component node may vary - validate if we are using the text field 
                String value = selectableComponent_.getText().trim();
                if (value.length() > 0) {
                    try {
                        if (Utility.isUUID(value)) {
                            String result = DynamicSememeValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(new DynamicSememeUUID(UUID.fromString(value)),
                                            new DynamicSememeString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null, null); //component type validator doesn't use vc, so null is ok
                            if (result.length() > 0) {
                                setInvalidReason(result);
                                logger_.info(result);
                                return false;
                            }
                        } else if (Utility.isInt(value)) {
                            String result = DynamicSememeValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(new DynamicSememeNid(Integer.parseInt(value)),
                                            new DynamicSememeString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null, null); //component type validator doesn't use vc, so null is ok
                            if (result.length() > 0) {
                                setInvalidReason(result);
                                logger_.info(result);
                                return false;
                            }
                        } else {
                            setInvalidReason(
                                    "Value cannot be parsed as a component identifier.  Must be a UUID or a valid NID");
                            return false;
                        }
                    } catch (Exception e) {
                        logger_.error("Error checking component type validation", e);
                        setInvalidReason("Unexpected error validating entry");
                        return false;
                    }
                } else {
                    setInvalidReason("Component identifier is required");
                    return false;
                }
            }
            clearInvalidReason();
            return true;
        }
    };

    selectableComponentNode_ = ErrorMarkerUtils.setupErrorMarker(selectableComponent_, null,
            selectableComponentNodeValid_);

    //delay adding concept / component till we know if / where
    ColumnConstraints cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    cc.setMinWidth(FxUtils.calculateNecessaryWidthOfBoldLabel(referencedComponent));
    gp_.getColumnConstraints().add(cc);

    cc = new ColumnConstraints();
    cc.setHgrow(Priority.ALWAYS);
    gp_.getColumnConstraints().add(cc);

    Label l = new Label("Data Fields");
    l.getStyleClass().add("boldLabel");
    VBox.setMargin(l, new Insets(5, 5, 5, 5));
    topItems.getChildren().add(l);

    root.setTop(topItems);

    sp_ = new ScrollPane();
    sp_.visibleProperty().bind(assemblageIsValid_);
    sp_.setFitToHeight(true);
    sp_.setFitToWidth(true);
    root.setCenter(sp_);

    allValid_ = new UpdateableBooleanBinding() {
        {
            addBinding(assemblageIsValid_, selectableConcept_.isValid(), selectableComponentNodeValid_);
        }

        @Override
        protected boolean computeValue() {
            if (assemblageIsValid_.get() && (conceptNodeIsConceptType_ ? selectableConcept_.isValid().get()
                    : selectableComponentNodeValid_.get())) {
                boolean allDataValid = true;
                for (ReadOnlyStringProperty ssp : currentDataFieldWarnings_) {
                    if (ssp.get().length() > 0) {
                        allDataValid = false;
                        break;
                    }
                }
                if (allDataValid) {
                    clearInvalidReason();
                    return true;
                }
            }
            setInvalidReason("All errors must be corrected before save is allowed");
            return false;
        }
    };

    GridPane bottomRow = new GridPane();
    //spacer col
    bottomRow.add(new Region(), 0, 0);

    Button cancelButton = new Button("Cancel");
    cancelButton.setOnAction((action) -> {
        close();
    });
    GridPane.setMargin(cancelButton, new Insets(5, 20, 5, 0));
    GridPane.setHalignment(cancelButton, HPos.RIGHT);
    bottomRow.add(cancelButton, 1, 0);

    Button saveButton = new Button("Save");
    saveButton.disableProperty().bind(allValid_.not());
    saveButton.setOnAction((action) -> {
        doSave();
    });
    Node wrappedSave = ErrorMarkerUtils.setupDisabledInfoMarker(saveButton, allValid_.getReasonWhyInvalid());
    GridPane.setMargin(wrappedSave, new Insets(5, 0, 5, 20));
    bottomRow.add(wrappedSave, 2, 0);

    //spacer col
    bottomRow.add(new Region(), 3, 0);

    cc = new ColumnConstraints();
    cc.setHgrow(Priority.SOMETIMES);
    cc.setFillWidth(true);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.SOMETIMES);
    cc.setFillWidth(true);
    bottomRow.getColumnConstraints().add(cc);
    root.setBottom(bottomRow);

    Scene scene = new Scene(root);
    scene.getStylesheets().add(AddSememePopup.class.getResource("/isaac-shared-styles.css").toString());
    setScene(scene);
}

From source file:gov.va.isaac.gui.refexViews.refexEdit.AddRefexPopup.java

private AddRefexPopup() {
    super();/*from w  w  w . j a v  a  2 s.  c  om*/
    BorderPane root = new BorderPane();

    VBox topItems = new VBox();
    topItems.setFillWidth(true);

    title_ = new Label("Create new sememe instance");
    title_.getStyleClass().add("titleLabel");
    title_.setAlignment(Pos.CENTER);
    title_.prefWidthProperty().bind(topItems.widthProperty());
    topItems.getChildren().add(title_);
    VBox.setMargin(title_, new Insets(10, 10, 10, 10));

    gp_ = new GridPane();
    gp_.setHgap(10.0);
    gp_.setVgap(10.0);
    VBox.setMargin(gp_, new Insets(5, 5, 5, 5));
    topItems.getChildren().add(gp_);

    Label referencedComponent = new Label("Referenced Component");
    referencedComponent.getStyleClass().add("boldLabel");
    gp_.add(referencedComponent, 0, 0);

    unselectableComponentLabel_ = new CopyableLabel();
    unselectableComponentLabel_.setWrapText(true);
    AppContext.getService(DragRegistry.class).setupDragOnly(unselectableComponentLabel_, () -> {
        if (editRefex_ == null) {
            if (createRefexFocus_.getComponentNid() != null) {
                return createRefexFocus_.getComponentNid() + "";
            } else {
                return createRefexFocus_.getAssemblyNid() + "";
            }
        } else {
            return editRefex_.getRefex().getAssemblageNid() + "";
        }
    });
    //delay adding till we know which row

    Label assemblageConceptLabel = new Label("Assemblage Concept");
    assemblageConceptLabel.getStyleClass().add("boldLabel");
    gp_.add(assemblageConceptLabel, 0, 1);

    selectableConcept_ = new ConceptNode(null, true, refexDropDownOptions, null);

    selectableConcept_.getConceptProperty().addListener(new ChangeListener<ConceptVersionBI>() {
        @Override
        public void changed(ObservableValue<? extends ConceptVersionBI> observable, ConceptVersionBI oldValue,
                ConceptVersionBI newValue) {
            if (createRefexFocus_ != null && createRefexFocus_.getComponentNid() != null) {
                if (selectableConcept_.isValid().get()) {
                    //Its a valid concept, but is it a valid assemblage concept?
                    try {
                        assemblageInfo_ = RefexDynamicUsageDescriptionBuilder
                                .readRefexDynamicUsageDescriptionConcept(
                                        selectableConcept_.getConceptNoWait().getNid());
                        assemblageIsValid_.set(true);
                        if (assemblageInfo_.getReferencedComponentTypeRestriction() != null) {
                            String result = RefexDynamicValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(
                                            new RefexDynamicNid(createRefexFocus_.getComponentNid()),
                                            new RefexDynamicString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null); //component type validator doesn't use vc, so null is ok
                            if (result.length() > 0) {
                                selectableConcept_.isValid()
                                        .setInvalid("The selected assemblage requires the component type to be "
                                                + assemblageInfo_.getReferencedComponentTypeRestriction()
                                                        .toString()
                                                + ", which doesn't match the referenced component.");
                                logger_.info("The selected assemblage requires the component type to be "
                                        + assemblageInfo_.getReferencedComponentTypeRestriction().toString()
                                        + ", which doesn't match the referenced component.");
                                assemblageIsValid_.set(false);
                            }
                        }
                    } catch (Exception e) {
                        selectableConcept_.isValid().setInvalid(
                                "The selected concept is not properly constructed for use as an Assemblage concept");
                        logger_.info("Concept not a valid concept for a sememe assemblage", e);
                        assemblageIsValid_.set(false);
                    }
                } else {
                    assemblageInfo_ = null;
                    assemblageIsValid_.set(false);
                }
                buildDataFields(assemblageIsValid_.get(), null);
            }
        }
    });

    selectableComponent_ = new TextField();

    selectableComponentNodeValid_ = new ValidBooleanBinding() {
        {
            setComputeOnInvalidate(true);
            bind(selectableComponent_.textProperty());
            invalidate();
        }

        @Override
        protected boolean computeValue() {
            if (createRefexFocus_ != null && createRefexFocus_.getAssemblyNid() != null
                    && !conceptNodeIsConceptType_) {
                //If the assembly nid was what was set - the component node may vary - validate if we are using the text field 
                String value = selectableComponent_.getText().trim();
                if (value.length() > 0) {
                    try {
                        if (Utility.isUUID(value)) {
                            String result = RefexDynamicValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(new RefexDynamicUUID(UUID.fromString(value)),
                                            new RefexDynamicString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null); //component type validator doesn't use vc, so null is ok
                            if (result.length() > 0) {
                                setInvalidReason(result);
                                logger_.info(result);
                                return false;
                            }
                        } else if (Utility.isInt(value)) {
                            String result = RefexDynamicValidatorType.COMPONENT_TYPE
                                    .passesValidatorStringReturn(new RefexDynamicNid(Integer.parseInt(value)),
                                            new RefexDynamicString(assemblageInfo_
                                                    .getReferencedComponentTypeRestriction().name()),
                                            null); //component type validator doesn't use vc, so null is ok
                            if (result.length() > 0) {
                                setInvalidReason(result);
                                logger_.info(result);
                                return false;
                            }
                        } else {
                            setInvalidReason(
                                    "Value cannot be parsed as a component identifier.  Must be a UUID or a valid NID");
                            return false;
                        }
                    } catch (Exception e) {
                        logger_.error("Error checking component type validation", e);
                        setInvalidReason("Unexpected error validating entry");
                        return false;
                    }
                } else {
                    setInvalidReason("Component identifier is required");
                    return false;
                }
            }
            clearInvalidReason();
            return true;
        }
    };

    selectableComponentNode_ = ErrorMarkerUtils.setupErrorMarker(selectableComponent_, null,
            selectableComponentNodeValid_);

    //delay adding concept / component till we know if / where
    ColumnConstraints cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    cc.setMinWidth(FxUtils.calculateNecessaryWidthOfBoldLabel(referencedComponent));
    gp_.getColumnConstraints().add(cc);

    cc = new ColumnConstraints();
    cc.setHgrow(Priority.ALWAYS);
    gp_.getColumnConstraints().add(cc);

    Label l = new Label("Data Fields");
    l.getStyleClass().add("boldLabel");
    VBox.setMargin(l, new Insets(5, 5, 5, 5));
    topItems.getChildren().add(l);

    root.setTop(topItems);

    sp_ = new ScrollPane();
    sp_.visibleProperty().bind(assemblageIsValid_);
    sp_.setFitToHeight(true);
    sp_.setFitToWidth(true);
    root.setCenter(sp_);

    allValid_ = new UpdateableBooleanBinding() {
        {
            addBinding(assemblageIsValid_, selectableConcept_.isValid(), selectableComponentNodeValid_);
        }

        @Override
        protected boolean computeValue() {
            if (assemblageIsValid_.get() && (conceptNodeIsConceptType_ ? selectableConcept_.isValid().get()
                    : selectableComponentNodeValid_.get())) {
                boolean allDataValid = true;
                for (ReadOnlyStringProperty ssp : currentDataFieldWarnings_) {
                    if (ssp.get().length() > 0) {
                        allDataValid = false;
                        break;
                    }
                }
                if (allDataValid) {
                    clearInvalidReason();
                    return true;
                }
            }
            setInvalidReason("All errors must be corrected before save is allowed");
            return false;
        }
    };

    GridPane bottomRow = new GridPane();
    //spacer col
    bottomRow.add(new Region(), 0, 0);

    Button cancelButton = new Button("Cancel");
    cancelButton.setOnAction((action) -> {
        close();
    });
    GridPane.setMargin(cancelButton, new Insets(5, 20, 5, 0));
    GridPane.setHalignment(cancelButton, HPos.RIGHT);
    bottomRow.add(cancelButton, 1, 0);

    Button saveButton = new Button("Save");
    saveButton.disableProperty().bind(allValid_.not());
    saveButton.setOnAction((action) -> {
        doSave();
    });
    Node wrappedSave = ErrorMarkerUtils.setupDisabledInfoMarker(saveButton, allValid_.getReasonWhyInvalid());
    GridPane.setMargin(wrappedSave, new Insets(5, 0, 5, 20));
    bottomRow.add(wrappedSave, 2, 0);

    //spacer col
    bottomRow.add(new Region(), 3, 0);

    cc = new ColumnConstraints();
    cc.setHgrow(Priority.SOMETIMES);
    cc.setFillWidth(true);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.NEVER);
    bottomRow.getColumnConstraints().add(cc);
    cc = new ColumnConstraints();
    cc.setHgrow(Priority.SOMETIMES);
    cc.setFillWidth(true);
    bottomRow.getColumnConstraints().add(cc);
    root.setBottom(bottomRow);

    Scene scene = new Scene(root);
    scene.getStylesheets().add(AddRefexPopup.class.getResource("/isaac-shared-styles.css").toString());
    setScene(scene);
}