Example usage for javafx.scene.layout BorderPane BorderPane

List of usage examples for javafx.scene.layout BorderPane BorderPane

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Introduction

In this page you can find the example usage for javafx.scene.layout BorderPane BorderPane.

Prototype

public BorderPane(Node center)

Source Link

Document

Creates an BorderPane layout with the given Node as the center of the BorderPane.

Usage

From source file:org.mskcc.shenkers.control.track.bam.BamView2.java

@Override
public Task<Pane> getContent(BamContext context) {
    return context.spanProperty().getValue().map(i -> {

        String chr = i.getChr();/* w w w.ja  va 2 s . c o  m*/
        int start = i.getStart();
        int end = i.getEnd();

        Task<Pane> task = new PaneTask(context, chr, start, end);

        logger.info("returning task");
        return task;
    }).orElse(new Task<Pane>() {

        @Override
        protected Pane call() throws Exception {
            return new BorderPane(new Label("coordinates not set"));
        }
    }
    //                new BorderPane(new Label("bamview1: span not set"))
    //                new Pane()
    );
}

From source file:org.mskcc.shenkers.control.track.bigwig.BigWigView.java

@Override
public Task<Pane> getContent(BigWigContext context) {
    return context.spanProperty().getValue().map(i -> {

        String chr = i.getChr();/*  w w w  . java2  s .c  o  m*/
        int start = i.getStart();
        int end = i.getEnd();

        Task<Pane> task = new PaneTask(context, chr, start, end);

        logger.info("returning task");
        return task;
    }).orElse(new Task<Pane>() {

        @Override
        protected Pane call() throws Exception {
            return new BorderPane(new Label("coordinates not set"));
        }
    }
    //                new BorderPane(new Label("bamview1: span not set"))
    //                new Pane()
    );
}

From source file:org.mskcc.shenkers.control.track.gene.GeneModelView.java

@Override
public Task<Pane> getContent(GeneModelContext context) {
    return context.spanProperty().getValue().map(i -> {

        String chr = i.getChr();/*w  w  w.  j a  v a  2  s  .c  o m*/
        int start = i.getStart();
        int end = i.getEnd();

        Task<Pane> task = new PaneTask(context, chr, start, end);

        logger.info("returning task");
        return task;
    }).orElse(new Task<Pane>() {

        @Override
        protected Pane call() throws Exception {
            return new BorderPane(new Label("coordinates not set"));
        }
    }
    //                new BorderPane(new Label("bamview1: span not set"))
    //                new Pane()
    );
}

From source file:org.mskcc.shenkers.control.track.rest.RestIntervalView.java

@Override
public Task<Pane> getContent(RestIntervalContext context) {
    return context.spanProperty().getValue().map(i -> {

        String chr = i.getChr();/*w ww  .  j  a  v  a2 s  .  c om*/
        int start = i.getStart();
        int end = i.getEnd();

        Task<Pane> task = new PaneTask(context, chr, start, end);

        logger.info("returning task");
        return task;
    }).orElse(new Task<Pane>() {

        @Override
        protected Pane call() throws Exception {
            return new BorderPane(new Label("coordinates not set"));
        }
    }
    //                new BorderPane(new Label("bamview1: span not set"))
    //                new Pane()
    );
}

From source file:com.thomaskuenneth.tkmactuning.TKMacTuning.java

@Override
public void start(Stage primaryStage) {
    TabPane tabPane = new TabPane();
    tabPane.setTabClosingPolicy(TabPane.TabClosingPolicy.UNAVAILABLE);
    // Found here: http://stackoverflow.com/a/17488304/5956451
    tabPane.getStyleClass().add("floating");

    // TODO: propper error handling
    JSONTokener t = new JSONTokener(getClass().getResourceAsStream("resources/plugins.json"));
    JSONArray a = new JSONArray(t);
    a.forEach((Object anObject) -> {
        JSONObject jsonObject = (JSONObject) anObject;
        addPlugin(tabPane, jsonObject.getString("class"), jsonObject.getString("pluginName"));
    });/*w w  w .  ja v  a  2  s  .com*/

    FlowPane buttonsPane = new FlowPane(Orientation.HORIZONTAL);
    buttonsPane.setPadding(LayoutConstants.PADDING_1);
    buttonsPane.setHgap(LayoutConstants.HORIZONTAL_CONTROL_GAP);
    buttonsPane.setAlignment(Pos.BASELINE_LEFT);
    final Button buttonReread = new Button(getString("reread"));
    buttonReread.setOnAction(event -> {
        PluginManager.reread(this);
    });
    buttonsPane.getChildren().add(buttonReread);
    final Button buttonApply = new Button(getString("apply"));
    buttonApply.setOnAction(event -> {
        PluginManager.save(this);
    });
    buttonsPane.getChildren().add(buttonApply);

    statusbar = new StatusBar();
    BorderPane borderPane = new BorderPane(tabPane);
    borderPane.setTop(buttonsPane);
    borderPane.setBottom(statusbar);
    primaryStage.setScene(new Scene(borderPane, 800, 600));
    primaryStage.setTitle(getString("application_name"));

    ready();
    primaryStage.show();
}

From source file:org.mskcc.shenkers.control.track.bam.BamView1.java

@Override
public Task<Pane> getContent(BamContext context) {

    return context.spanProperty().getValue().map(i -> {

        if (false) {
            SamReader reader = context.readerProperty().getValue();
            int[] coverage = coverage(reader, i.getChr(), i.getStart(), i.getEnd());
            String chr = i.getChr();
            int start = i.getStart();
            int end = i.getEnd();
            PaneTask task = new PaneTask(context, chr, start, end);
            //            LineHistogramView lhv = new LineHistogramView();
            //                lhv.setMin(0);
            //                OptionalInt max = IntStream.of(coverage).max();
            //                max.ifPresent(m -> lhv.setMax(m));
            //                double[] data = ArrayUtils.toPrimitive(IntStream.of(coverage).mapToDouble(j -> j + 0.).boxed().collect(Collectors.toList()).toArray(new Double[0]));
            //            lhv.setData(data);
            //                logger.info("coverage {}", IntStream.of(coverage).mapToDouble(j -> j + 0.).boxed().collect(Collectors.toList()).toString());
        }/* w w  w.  j  ava  2  s  .  com*/

        SamReader reader = context.readerProperty().getValue();

        String chr = i.getChr();
        int start = i.getStart();
        int end = i.getEnd();
        Task<Pane> task = new PaneTask(context, chr, start, end);

        //            LineHistogramView lhv = new LineHistogramView();
        //            SamReader reader = context.readerProperty().getValue();
        //
        //            Pane content = get(reader, i.getChr(), i.getStart(), i.getEnd());
        //            Task<Pane> task = new BAMCoverageTask(lhv, reader, i.getChr(), i.getStart(), i.getEnd());
        // start a background thread to load the track
        //            logger.info("canceling");
        //            bcs.cancel();
        //            logger.info("reseting");
        //            bcs.reset();
        //
        //            logger.info("reading context");
        //            SamReader reader = context.readerProperty().getValue();
        //            logger.info("setting region");
        //            bcs.setRegion(reader, i.getChr(), i.getStart(), i.getEnd());
        //
        //            logger.info("starting service");
        //            bcs.start();
        logger.info("returning task");
        return task;
    }).orElse(new Task<Pane>() {

        @Override
        protected Pane call() throws Exception {
            return new BorderPane(new Label("bamview1: span not set"));
        }
    }
    //                new BorderPane(new Label("bamview1: span not set"))
    //                new Pane()
    );

}

From source file:com.deicos.lince.Initializer.java

@Override
public void start(Stage stage) throws Exception {
    /*AppPreloader preloader = new AppPreloader();
    preloader.start(stage);*///from   ww w . j a  v  a2s.  co  m
    notifyPreloader(new Preloader.StateChangeNotification(Preloader.StateChangeNotification.Type.BEFORE_START));
    stage.setTitle(windowTitle);
    //stage.setScene(new Scene(mainLayout));

    Rectangle2D screenBounds = Screen.getPrimary().getVisualBounds();
    Browser browser = new Browser(BrowserType.HEAVYWEIGHT);
    BrowserView view = new BrowserView(browser);
    //String url = getClass().getClassLoader().getResource("app-lince.html").toString();
    String url = getServerURL();
    browser.loadURL(url);
    String remoteDebuggingURL = browser.getRemoteDebuggingURL();
    logger.info("==============================================================================");
    logger.info("   Remote debug   :" + remoteDebuggingURL);
    logger.info("   Remote uri     :" + url);
    logger.info("==============================================================================");
    Scene scene = new Scene(new BorderPane(view), screenBounds.getWidth() - 20, screenBounds.getHeight() - 40);
    stage.setScene(scene);
    stage.setResizable(true);
    stage.centerOnScreen();
    stage.show();
    stage.setOnCloseRequest(this);
}

From source file:tachyon.view.ProjectProperties.java

public ProjectProperties(JavaProject project, Window w) {
    this.project = project;
    stage = new Stage();
    stage.initOwner(w);//  www.  ja v a2  s.  com
    stage.initModality(Modality.APPLICATION_MODAL);
    stage.setWidth(600);
    stage.setTitle("Project Properties - " + project.getProjectName());
    stage.getIcons().add(tachyon.Tachyon.icon);
    stage.setResizable(false);
    HBox mai, libs, one, two, thr, fou;
    ListView<String> compileList, runtimeList;
    Button compileAdd, compileRemove, preview, selectIm, runtimeAdd, runtimeRemove;
    TextField iconField;
    stage.setScene(new Scene(new VBox(5, pane = new TabPane(
            new Tab("Library Settings",
                    box1 = new VBox(15,
                            libs = new HBox(10, new Label("External Libraries"), libsView = new ListView<>(),
                                    new VBox(5, addJar = new Button("Add Jar"),
                                            removeJar = new Button("Remove Jar"))))),
            new Tab("Program Settings",
                    new ScrollPane(box2 = new VBox(15, one = new HBox(10, new Label("Main-Class"),
                            mainClass = new TextField(project.getMainClassName()),
                            select = new Button("Select")),
                            two = new HBox(10, new Label("Compile-Time Arguments"),
                                    compileList = new ListView<>(),
                                    new VBox(5, compileAdd = new Button("Add Argument"),
                                            compileRemove = new Button("Remove Argument")))))),
            new Tab("Deployment Settings",
                    box3 = new VBox(15, thr = new HBox(10, new Label("Icon File"),
                            iconField = new TextField(project.getFileIconPath()),
                            preview = new Button("Preview Image"), selectIm = new Button("Select Icon")),
                            fou = new HBox(10, new Label("Runtime Arguments"), runtimeList = new ListView<>(),
                                    new VBox(5, runtimeAdd = new Button("Add Argument"),
                                            runtimeRemove = new Button("Remove Argument")))))),
            new VBox(15, mai = new HBox(10, cancel = new Button("Cancel"), confirm = new Button("Confirm"))))));
    if (applyCss.get()) {
        stage.getScene().getStylesheets().add(css);
    }
    for (Tab b : pane.getTabs()) {
        b.setClosable(false);
    }
    mainClass.setPromptText("Main-Class");
    box1.setPadding(new Insets(5, 10, 5, 10));
    mai.setAlignment(Pos.CENTER_RIGHT);
    mai.setPadding(box1.getPadding());
    libs.setAlignment(Pos.CENTER);
    one.setAlignment(Pos.CENTER);
    two.setAlignment(Pos.CENTER);
    thr.setAlignment(Pos.CENTER);
    fou.setAlignment(Pos.CENTER);
    box1.setAlignment(Pos.CENTER);
    box2.setPadding(box1.getPadding());
    box2.setAlignment(Pos.CENTER);
    box3.setPadding(box1.getPadding());
    box3.setAlignment(Pos.CENTER);
    mainClass.setEditable(false);
    mainClass.setPrefWidth(200);
    for (JavaLibrary lib : project.getAllLibs()) {
        libsView.getItems().add(lib.getBinaryAbsolutePath());
    }
    for (String sa : project.getCompileTimeArguments().keySet()) {
        compileList.getItems().add(sa + ":" + project.getCompileTimeArguments().get(sa));
    }
    for (String sa : project.getRuntimeArguments()) {
        runtimeList.getItems().add(sa);
    }
    compileAdd.setOnAction((e) -> {
        Dialog<Pair<String, String>> dialog = new Dialog<>();
        dialog.setTitle("Compiler Argument");
        dialog.initOwner(stage);
        dialog.setHeaderText("Entry the argument");

        ButtonType loginButtonType = new ButtonType("Done", ButtonData.OK_DONE);
        dialog.getDialogPane().getButtonTypes().addAll(loginButtonType, ButtonType.CANCEL);

        GridPane grid = new GridPane();
        grid.setHgap(10);
        grid.setVgap(10);
        grid.setPadding(new Insets(20, 150, 10, 10));

        TextField username = new TextField();
        username.setPromptText("Key");
        TextField password = new TextField();
        password.setPromptText("Value");

        grid.add(new Label("Key:"), 0, 0);
        grid.add(username, 1, 0);
        grid.add(new Label("Value:"), 0, 1);
        grid.add(password, 1, 1);

        Node loginButton = dialog.getDialogPane().lookupButton(loginButtonType);
        loginButton.setDisable(true);

        username.textProperty().addListener((observable, oldValue, newValue) -> {
            loginButton.setDisable(newValue.trim().isEmpty());
        });

        dialog.getDialogPane().setContent(grid);

        Platform.runLater(() -> username.requestFocus());

        dialog.setResultConverter(dialogButton -> {
            if (dialogButton == loginButtonType) {
                return new Pair<>(username.getText(), password.getText());
            }
            return null;
        });

        Optional<Pair<String, String>> result = dialog.showAndWait();
        if (result.isPresent()) {
            compileList.getItems().add(result.get().getKey() + ":" + result.get().getValue());
        }
    });
    compileRemove.setOnAction((e) -> {
        if (compileList.getSelectionModel().getSelectedItem() != null) {
            compileList.getItems().remove(compileList.getSelectionModel().getSelectedItem());
        }
    });
    runtimeAdd.setOnAction((e) -> {
        TextInputDialog dia = new TextInputDialog();
        dia.setTitle("Add Runtime Argument");
        dia.setHeaderText("Enter an argument");
        dia.initOwner(stage);
        Optional<String> res = dia.showAndWait();
        if (res.isPresent()) {
            runtimeList.getItems().add(res.get());
        }
    });
    runtimeRemove.setOnAction((e) -> {
        if (runtimeList.getSelectionModel().getSelectedItem() != null) {
            runtimeList.getItems().remove(runtimeList.getSelectionModel().getSelectedItem());
        }
    });
    preview.setOnAction((e) -> {
        if (!iconField.getText().isEmpty()) {
            if (iconField.getText().endsWith(".ico")) {
                List<BufferedImage> read = new ArrayList<>();
                try {
                    read.addAll(ICODecoder.read(new File(iconField.getText())));
                } catch (IOException ex) {
                }
                if (read.size() >= 1) {
                    Image im = SwingFXUtils.toFXImage(read.get(0), null);
                    Stage st = new Stage();
                    st.initOwner(stage);
                    st.initModality(Modality.APPLICATION_MODAL);
                    st.setTitle("Icon Preview");
                    st.getIcons().add(Tachyon.icon);
                    st.setScene(new Scene(new BorderPane(new ImageView(im))));
                    if (applyCss.get()) {
                        st.getScene().getStylesheets().add(css);
                    }
                    st.showAndWait();
                }
            } else if (iconField.getText().endsWith(".icns")) {
                try {
                    BufferedImage ima = Imaging.getBufferedImage(new File(iconField.getText()));
                    if (ima != null) {
                        Image im = SwingFXUtils.toFXImage(ima, null);
                        Stage st = new Stage();
                        st.initOwner(stage);
                        st.initModality(Modality.APPLICATION_MODAL);
                        st.setTitle("Icon Preview");
                        st.getIcons().add(Tachyon.icon);
                        st.setScene(new Scene(new BorderPane(new ImageView(im))));
                        if (applyCss.get()) {
                            st.getScene().getStylesheets().add(css);
                        }
                        st.showAndWait();
                    }
                } catch (ImageReadException | IOException ex) {
                }
            } else {
                Image im = new Image(new File(iconField.getText()).toURI().toString());
                Stage st = new Stage();
                st.initOwner(stage);
                st.initModality(Modality.APPLICATION_MODAL);
                st.setTitle("Icon Preview");
                st.getIcons().add(Tachyon.icon);
                st.setScene(new Scene(new BorderPane(new ImageView(im))));
                if (applyCss.get()) {
                    st.getScene().getStylesheets().add(css);
                }
                st.showAndWait();
            }
        }
    });
    selectIm.setOnAction((e) -> {
        FileChooser fc = new FileChooser();
        fc.setTitle("Icon File");
        String OS = System.getProperty("os.name").toLowerCase();
        fc.getExtensionFilters().add(new ExtensionFilter("Icon File",
                OS.contains("win") ? getWindowsImageExtensions() : getMacImageExtensions()));
        fc.setSelectedExtensionFilter(fc.getExtensionFilters().get(0));
        File lf = fc.showOpenDialog(stage);
        if (lf != null) {
            iconField.setText(lf.getAbsolutePath());
        }
    });

    addJar.setOnAction((e) -> {
        FileChooser f = new FileChooser();
        f.setTitle("External Libraries");
        f.setSelectedExtensionFilter(new ExtensionFilter("Jar Files", "*.jar"));
        List<File> showOpenMultipleDialog = f.showOpenMultipleDialog(stage);
        if (showOpenMultipleDialog != null) {
            for (File fi : showOpenMultipleDialog) {
                if (!libsView.getItems().contains(fi.getAbsolutePath())) {
                    libsView.getItems().add(fi.getAbsolutePath());
                }
            }
        }
    });

    removeJar.setOnAction((e) -> {
        String selected = libsView.getSelectionModel().getSelectedItem();
        if (selected != null) {
            libsView.getItems().remove(selected);
        }
    });

    select.setOnAction((e) -> {
        List<String> all = getAll();
        ChoiceDialog<String> di = new ChoiceDialog<>(project.getMainClassName(), all);
        di.setTitle("Select Main Class");
        di.initOwner(stage);
        di.setHeaderText("Select A Main Class");
        Optional<String> show = di.showAndWait();
        if (show.isPresent()) {
            mainClass.setText(show.get());
        }
    });
    cancel.setOnAction((e) -> {
        stage.close();
    });
    confirm.setOnAction((e) -> {
        project.setMainClassName(mainClass.getText());
        project.setFileIconPath(iconField.getText());
        project.setRuntimeArguments(runtimeList.getItems());
        HashMap<String, String> al = new HashMap<>();
        for (String s : compileList.getItems()) {
            String[] spl = s.split(":");
            al.put(spl[0], spl[1]);
        }
        project.setCompileTimeArguments(al);
        project.setAllLibs(libsView.getItems());
        stage.close();
    });
}

From source file:jp.ac.tohoku.ecei.sb.metabolome.lims.gui.MainWindowController.java

@Override
public void initialize(URL location, ResourceBundle resources) {
    // Table Study
    initializeTable(tableStudy, StudyImpl.class);
    initializeTable(tablePlate, PlateImpl.class);
    initializeTable(tableSample, SampleImpl.class);
    initializeTable(tableInjection, InjectionImpl.class);
    initializeTable(tableCompound, CompoundImpl.class);
    initializeTable(tableHistory, OperationHistoryImpl.class);

    menuBar.setUseSystemMenuBar(true);//from  w w w  .  j  av a2  s . co m

    commandManager = new CommandManager();
    commandManager.setContext(commandManagerContext);
    final GUICommandPaneFactory commandPaneFactory = new GUICommandPaneFactory(commandManager);
    MetabolomeQC.addCorrectionCommands(commandManager);
    for (Map.Entry<String, Class> commend : commandManager.getCommands().entrySet()) {
        MenuItem menuItem = new MenuItem(commend.getKey());
        menuItem.setText(commend.getKey());
        menuItem.setOnAction(e -> {
            final Stage stage = new Stage();
            stage.initModality(Modality.WINDOW_MODAL);

            Parent guiCommand = commandPaneFactory.getCommandPane(commend.getKey(),
                    (commandEvent, managedCommand) -> {
                        stage.close();
                    });
            BorderPane margins = new BorderPane(guiCommand);
            BorderPane.setMargin(guiCommand, new Insets(10));

            stage.setScene(new Scene(margins));
            stage.initOwner(this.stage);
            stage.showAndWait();
            onRefresh(null);
        });
        correctionMenu.getItems().add(menuItem);
    }

    onRefresh(null);
}

From source file:qupath.lib.gui.tma.TMASummaryViewer.java

private Pane getCustomizeTablePane() {
    TableView<TreeTableColumn<TMAEntry, ?>> tableColumns = new TableView<>();
    tableColumns.setPlaceholder(new Text("No columns available"));
    tableColumns.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE);
    tableColumns.setColumnResizePolicy(TableView.CONSTRAINED_RESIZE_POLICY);

    SortedList<TreeTableColumn<TMAEntry, ?>> sortedColumns = new SortedList<>(
            table.getColumns().filtered(p -> !p.getText().trim().isEmpty()));
    sortedColumns.setComparator((c1, c2) -> c1.getText().compareTo(c2.getText()));
    tableColumns.setItems(sortedColumns);
    sortedColumns.comparatorProperty().bind(tableColumns.comparatorProperty());
    //      sortedColumns.comparatorProperty().bind(tableColumns.comparatorProperty());

    TableColumn<TreeTableColumn<TMAEntry, ?>, String> columnName = new TableColumn<>("Column");
    columnName.setCellValueFactory(v -> v.getValue().textProperty());
    TableColumn<TreeTableColumn<TMAEntry, ?>, Boolean> columnVisible = new TableColumn<>("Visible");
    columnVisible.setCellValueFactory(v -> v.getValue().visibleProperty());
    //      columnVisible.setCellValueFactory(col -> {
    //         SimpleBooleanProperty prop = new SimpleBooleanProperty(col.getValue().isVisible());
    //         prop.addListener((v, o, n) -> col.getValue().setVisible(n));
    //         return prop;
    //      });//from w  w  w.j a v a 2  s . c om
    tableColumns.setEditable(true);
    columnVisible.setCellFactory(v -> new CheckBoxTableCell<>());
    tableColumns.getColumns().add(columnName);
    tableColumns.getColumns().add(columnVisible);
    ContextMenu contextMenu = new ContextMenu();

    Action actionShowSelected = new Action("Show selected", e -> {
        for (TreeTableColumn<?, ?> col : tableColumns.getSelectionModel().getSelectedItems()) {
            if (col != null)
                col.setVisible(true);
            else {
                // Not sure why this happens...?
                logger.trace("Selected column is null!");
            }
        }
    });

    Action actionHideSelected = new Action("Hide selected", e -> {
        for (TreeTableColumn<?, ?> col : tableColumns.getSelectionModel().getSelectedItems()) {
            if (col != null)
                col.setVisible(false);
            else {
                // Not sure why this happens...?
                logger.trace("Selected column is null!");
            }
        }
    });

    contextMenu.getItems().addAll(ActionUtils.createMenuItem(actionShowSelected),
            ActionUtils.createMenuItem(actionHideSelected));
    tableColumns.setContextMenu(contextMenu);
    tableColumns.setTooltip(
            new Tooltip("Show or hide table columns - right-click to change multiple columns at once"));

    BorderPane paneColumns = new BorderPane(tableColumns);
    paneColumns.setBottom(PanelToolsFX.createColumnGridControls(ActionUtils.createButton(actionShowSelected),
            ActionUtils.createButton(actionHideSelected)));

    VBox paneRows = new VBox();

    // Create a box to filter on some metadata text
    ComboBox<String> comboMetadata = new ComboBox<>();
    comboMetadata.setItems(metadataNames);
    comboMetadata.getSelectionModel().getSelectedItem();
    comboMetadata.setPromptText("Select column");
    TextField tfFilter = new TextField();
    CheckBox cbExact = new CheckBox("Exact");
    // Set listeners
    cbExact.selectedProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));
    tfFilter.textProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));
    comboMetadata.getSelectionModel().selectedItemProperty().addListener(
            (v, o, n) -> setMetadataTextPredicate(comboMetadata.getSelectionModel().getSelectedItem(),
                    tfFilter.getText(), cbExact.isSelected(), !cbExact.isSelected()));

    GridPane paneMetadata = new GridPane();
    paneMetadata.add(comboMetadata, 0, 0);
    paneMetadata.add(tfFilter, 1, 0);
    paneMetadata.add(cbExact, 2, 0);
    paneMetadata.setPadding(new Insets(10, 10, 10, 10));
    paneMetadata.setVgap(2);
    paneMetadata.setHgap(5);
    comboMetadata.setMaxWidth(Double.MAX_VALUE);
    GridPane.setHgrow(tfFilter, Priority.ALWAYS);
    GridPane.setFillWidth(comboMetadata, Boolean.TRUE);
    GridPane.setFillWidth(tfFilter, Boolean.TRUE);

    TitledPane tpMetadata = new TitledPane("Metadata filter", paneMetadata);
    tpMetadata.setExpanded(false);
    //      tpMetadata.setCollapsible(false);
    Tooltip tooltipMetadata = new Tooltip(
            "Enter text to filter entries according to a selected metadata column");
    Tooltip.install(paneMetadata, tooltipMetadata);
    tpMetadata.setTooltip(tooltipMetadata);
    paneRows.getChildren().add(tpMetadata);

    // Add measurement predicate
    TextField tfCommand = new TextField();
    tfCommand.setTooltip(new Tooltip("Predicate used to filter entries for inclusion"));

    TextFields.bindAutoCompletion(tfCommand, e -> {
        int ind = tfCommand.getText().lastIndexOf("\"");
        if (ind < 0)
            return Collections.emptyList();
        String part = tfCommand.getText().substring(ind + 1);
        return measurementNames.stream().filter(n -> n.startsWith(part)).map(n -> "\"" + n + "\" ")
                .collect(Collectors.toList());
    });

    String instructions = "Enter a predicate to filter entries.\n"
            + "Only entries passing the test will be included in any results.\n"
            + "Examples of predicates include:\n" + "    \"Num Tumor\" > 200\n"
            + "    \"Num Tumor\" > 100 && \"Num Stroma\" < 1000";
    //      labelInstructions.setTooltip(new Tooltip("Note: measurement names must be in \"inverted commands\" and\n" + 
    //            "&& indicates 'and', while || indicates 'or'."));

    BorderPane paneMeasurementFilter = new BorderPane(tfCommand);
    Label label = new Label("Predicate: ");
    label.setAlignment(Pos.CENTER);
    label.setMaxHeight(Double.MAX_VALUE);
    paneMeasurementFilter.setLeft(label);

    Button btnApply = new Button("Apply");
    btnApply.setOnAction(e -> {
        TablePredicate predicateNew = new TablePredicate(tfCommand.getText());
        if (predicateNew.isValid()) {
            predicateMeasurements.set(predicateNew);
        } else {
            DisplayHelpers.showErrorMessage("Invalid predicate",
                    "Current predicate '" + tfCommand.getText() + "' is invalid!");
        }
        e.consume();
    });
    TitledPane tpMeasurementFilter = new TitledPane("Measurement filter", paneMeasurementFilter);
    tpMeasurementFilter.setExpanded(false);
    Tooltip tooltipInstructions = new Tooltip(instructions);
    tpMeasurementFilter.setTooltip(tooltipInstructions);
    Tooltip.install(paneMeasurementFilter, tooltipInstructions);
    paneMeasurementFilter.setRight(btnApply);

    paneRows.getChildren().add(tpMeasurementFilter);

    logger.info("Predicate set to: {}", predicateMeasurements.get());

    VBox pane = new VBox();
    //      TitledPane tpColumns = new TitledPane("Select column", paneColumns);
    //      tpColumns.setMaxHeight(Double.MAX_VALUE);
    //      tpColumns.setCollapsible(false);
    pane.getChildren().addAll(paneColumns, new Separator(), paneRows);
    VBox.setVgrow(paneColumns, Priority.ALWAYS);

    return pane;
}