List of usage examples for javafx.scene.input ClipboardContent ClipboardContent
ClipboardContent
From source file:net.rptools.tokentool.controller.TokenTool_Controller.java
@FXML void tokenImageView_OnDragDetected(MouseEvent event) { Dragboard db = tokenImageView.startDragAndDrop(TransferMode.ANY); ClipboardContent content = new ClipboardContent(); boolean saveAsToken = false; try {/* ww w .jav a 2 s . c o m*/ File tempTokenFile = fileSaveUtil.getTempFileName(saveAsToken, useFileNumberingCheckbox.isSelected(), fileNameTextField.getText(), fileNameSuffixTextField); writeTokenImage(tempTokenFile); content.putFiles(java.util.Collections.singletonList(tempTokenFile)); tempTokenFile.deleteOnExit(); } catch (Exception e) { log.error(e); } finally { content.putImage(tokenImageView.getImage()); db.setContent(content); event.consume(); } }
From source file:io.github.mzmine.modules.plots.msspectrum.MsSpectrumPlotWindowController.java
public void handleCopySpectra(Event event) { StringBuilder sb = new StringBuilder(); for (MsSpectrumDataSet dataset : datasets) { MsSpectrum spectrum = dataset.getSpectrum(); String spectrumString = TxtExportAlgorithm.spectrumToString(spectrum); String splash = SplashCalculationAlgorithm.calculateSplash(spectrum); sb.append("# "); sb.append(dataset.getName());/* ww w. java 2 s. c o m*/ sb.append("\n"); sb.append("# SPLASH ID: "); sb.append(splash); sb.append("\n"); sb.append(spectrumString); sb.append("\n"); } final Clipboard clipboard = Clipboard.getSystemClipboard(); final ClipboardContent content = new ClipboardContent(); content.putString(sb.toString()); clipboard.setContent(content); }
From source file:io.github.mzmine.modules.plots.msspectrum.MsSpectrumPlotWindowController.java
public void handleCopySplash(Event event) { StringBuilder sb = new StringBuilder(); for (MsSpectrumDataSet dataset : datasets) { MsSpectrum spectrum = dataset.getSpectrum(); String splash = SplashCalculationAlgorithm.calculateSplash(spectrum); sb.append(dataset.getName());/*w ww. ja v a2 s. c om*/ sb.append(" SPLASH ID: "); sb.append(splash); sb.append("\n"); } final Clipboard clipboard = Clipboard.getSystemClipboard(); final ClipboardContent content = new ClipboardContent(); content.putString(sb.toString()); clipboard.setContent(content); }
From source file:qupath.lib.gui.panels.survival.KaplanMeierDisplay.java
@SuppressWarnings("unchecked") private void generatePlot() { KaplanMeierDisplay.ScoreData newScoreData = scoreData; // If we have a hierarchy, update the scores with the most recent data if (hierarchy != null) { List<TMACoreObject> cores = PathObjectTools.getTMACoreObjects(hierarchy, false); double[] survival = new double[cores.size()]; boolean[] censored = new boolean[cores.size()]; double[] scores = new double[cores.size()]; // // Optionally sort by scores... helps a bit when debugging e.g. p-values, Hazard ratios etc. // cores.sort((c1, c2) -> Double.compare(c1.getMeasurementList().getMeasurementValue(scoreColumn), c2.getMeasurementList().getMeasurementValue(scoreColumn))); // scoreColumn = "Positive %"; // scoreColumn = "RoughScore"; for (int i = 0; i < cores.size(); i++) { TMACoreObject core = cores.get(i); MeasurementList ml = core.getMeasurementList(); survival[i] = core.getMeasurementList().getMeasurementValue(survivalColumn); double censoredValue = core.getMeasurementList().getMeasurementValue(censoredColumn); boolean hasCensoredValue = !Double.isNaN(censoredValue) && (censoredValue == 0 || censoredValue == 1); censored[i] = censoredValue != 0; if (!hasCensoredValue) { // If we don't have a censored value, ensure we mask out everything else scores[i] = Double.NaN; survival[i] = Double.NaN; } else if (ml.containsNamedMeasurement(scoreColumn)) // Get the score if we can scores[i] = ml.getMeasurementValue(scoreColumn); else { // // Try to compute score if we need to // Map<String, Number> map = ROIMeaningfulMeasurements.getPathClassSummaryMeasurements(core.getChildObjects(), true); // Number value = map.get(scoreColumn); // if (value == null) scores[i] = Double.NaN; // else // scores[i] = value.doubleValue(); }/*from w ww . ja v a 2 s. co m*/ } // Mask out any scores that don't have associated survival data for (int i = 0; i < survival.length; i++) { if (Double.isNaN(survival[i])) scores[i] = Double.NaN; } newScoreData = new ScoreData(scores, survival, censored); } if (newScoreData == null || newScoreData.scores.length == 0) return; // KaplanMeier kmHigh = new KaplanMeier("Above threshold"); // KaplanMeier kmLow = new KaplanMeier("Below threshold"); double[] quartiles = StatisticsHelper.getQuartiles(newScoreData.scores); double q1 = quartiles[0]; double median = quartiles[1]; double q3 = quartiles[2]; double[] thresholds; if (params != null) { Object thresholdMethod = params.getChoiceParameterValue("scoreThresholdMethod"); if (thresholdMethod.equals("Median")) { // panelParams.setNumericParameterValue("scoreThreshold", median); // ((DoubleParameter)params.getParameters().get("scoreThreshold")).setValue(median); // TODO: UPDATE DIALOG! thresholds = new double[] { median }; } else if (thresholdMethod.equals("Tertiles")) { // ((DoubleParameter)params.getParameters().get("scoreThreshold")).setValue(median); // TODO: UPDATE DIALOG! thresholds = StatisticsHelper.getTertiles(newScoreData.scores); } else if (thresholdMethod.equals("Quartiles")) { // ((DoubleParameter)params.getParameters().get("scoreThreshold")).setValue(median); // TODO: UPDATE DIALOG! thresholds = new double[] { q1, median, q3 }; } else if (thresholdMethod.equals("Manual (1)")) { thresholds = new double[] { params.getDoubleParameterValue("threshold1") }; } else if (thresholdMethod.equals("Manual (2)")) { thresholds = new double[] { params.getDoubleParameterValue("threshold1"), params.getDoubleParameterValue("threshold2") }; } else //if (thresholdMethod.equals("Manual (3)")) { thresholds = new double[] { params.getDoubleParameterValue("threshold1"), params.getDoubleParameterValue("threshold2"), params.getDoubleParameterValue("threshold3") }; } else thresholds = new double[] { median }; double minVal = Double.POSITIVE_INFINITY; double maxVal = Double.NEGATIVE_INFINITY; int numNonNaN = 0; for (double d : newScoreData.scores) { if (Double.isNaN(d)) continue; if (d < minVal) minVal = d; if (d > maxVal) maxVal = d; numNonNaN++; } boolean scoresValid = maxVal > minVal; // If not this, we don't have valid scores that we can work with double maxTimePoint = 0; for (double d : newScoreData.survival) { if (Double.isNaN(d)) continue; if (d > maxTimePoint) maxTimePoint = d; } if (panelParams != null && maxTimePoint > ((IntParameter) params.getParameters().get("censorTimePoints")).getUpperBound()) { panelParams.setNumericParameterValueRange("censorTimePoints", 0, Math.ceil(maxTimePoint)); } // Optionally censor at specified time double censorThreshold = params == null ? maxTimePoint : params.getIntParameterValue("censorTimePoints"); // Compute log-rank p-values for *all* possible thresholds // Simultaneously determine the threshold that yields the lowest p-value, // resolving ties in favour of a more even split between high/low numbers of events boolean pValuesChanged = false; if (calculateAllPValues) { if (!(pValues != null && pValueThresholds != null && newScoreData.equals(scoreData) && censorThreshold == lastPValueCensorThreshold)) { Map<Double, Double> mapLogRank = new TreeMap<>(); Set<Double> setObserved = new HashSet<>(); for (int i = 0; i < newScoreData.scores.length; i++) { Double d = newScoreData.scores[i]; boolean observed = !newScoreData.censored[i] && newScoreData.survival[i] < censorThreshold; if (observed) setObserved.add(d); if (mapLogRank.containsKey(d)) continue; List<KaplanMeierData> kmsTemp = splitByThresholds(newScoreData, new double[] { d }, censorThreshold, false); // if (kmsTemp.get(1).nObserved() == 0 || kmsTemp.get(1).nObserved() == 0) // continue; LogRankResult test = LogRankTest.computeLogRankTest(kmsTemp.get(0), kmsTemp.get(1)); double pValue = test.getPValue(); // double pValue = test.hazardRatio < 1 ? test.hazardRatio : 1.0/test.hazardRatio; // Checking usefulness of Hazard ratios... if (!Double.isFinite(pValue)) continue; // if (!Double.isFinite(test.getHazardRatio())) { //// continue; // pValue = Double.NaN; // } mapLogRank.put(d, pValue); } pValueThresholds = new double[mapLogRank.size()]; pValues = new double[mapLogRank.size()]; pValueThresholdsObserved = new boolean[mapLogRank.size()]; int count = 0; for (Entry<Double, Double> entry : mapLogRank.entrySet()) { pValueThresholds[count] = entry.getKey(); pValues[count] = entry.getValue(); if (setObserved.contains(entry.getKey())) pValueThresholdsObserved[count] = true; count++; } // Find the longest 'significant' stretch int maxSigCount = 0; int maxSigInd = -1; int sigCurrent = 0; int[] sigCount = new int[pValues.length]; for (int i = 0; i < pValues.length; i++) { if (pValues[i] < 0.05) { sigCurrent++; sigCount[i] = sigCurrent; if (sigCurrent > maxSigCount) { maxSigCount = sigCurrent; maxSigInd = i; } } else sigCurrent = 0; } if (maxSigCount == 0) { logger.info("No p-values < 0.05"); } else { double minThresh = maxSigInd - maxSigCount < 0 ? pValueThresholds[0] - 0.0000001 : pValueThresholds[maxSigInd - maxSigCount]; double maxThresh = pValueThresholds[maxSigInd]; int nBetween = 0; int nBetweenObserved = 0; for (int i = 0; i < newScoreData.scores.length; i++) { if (newScoreData.scores[i] > minThresh && newScoreData.scores[i] <= maxThresh) { nBetween++; if (newScoreData.survival[i] < censorThreshold && !newScoreData.censored[i]) nBetweenObserved++; } } logger.info("Longest stretch of p-values < 0.05: {} - {} ({} entries, {} observed)", minThresh, maxThresh, nBetween, nBetweenObserved); } pValuesSmoothed = new double[pValues.length]; Arrays.fill(pValuesSmoothed, Double.NaN); int n = (pValues.length / 20) * 2 + 1; logger.info("Smoothing log-rank test p-values by " + n); for (int i = n / 2; i < pValues.length - n / 2; i++) { double sum = 0; for (int k = i - n / 2; k < i - n / 2 + n; k++) { sum += pValues[k]; } pValuesSmoothed[i] = sum / n; } // for (int i = 0; i < pValues.length; i++) { // double sum = 0; // for (int k = Math.max(0, i-n/2); k < Math.min(pValues.length, i-n/2+n); k++) { // sum += pValues[k]; // } // pValuesSmoothed[i] = sum/n; // } // pValues = pValuesSmoothed; lastPValueCensorThreshold = censorThreshold; pValuesChanged = true; } } else { lastPValueCensorThreshold = Double.NaN; pValueThresholds = null; pValues = null; } // if (params != null && !Double.isNaN(bestThreshold) && (params.getChoiceParameterValue("scoreThresholdMethod").equals("Lowest p-value"))) if (params != null && (params.getChoiceParameterValue("scoreThresholdMethod").equals("Lowest p-value"))) { int bestIdx = -1; double bestPValue = Double.POSITIVE_INFINITY; for (int i = pValueThresholds.length / 10; i < pValueThresholds.length * 9 / 10; i++) { if (pValues[i] < bestPValue) { bestIdx = i; bestPValue = pValues[i]; } } thresholds = bestIdx >= 0 ? new double[] { pValueThresholds[bestIdx] } : new double[0]; } else if (params != null && (params.getChoiceParameterValue("scoreThresholdMethod").equals("Lowest smoothed p-value"))) { int bestIdx = -1; double bestPValue = Double.POSITIVE_INFINITY; for (int i = pValueThresholds.length / 10; i < pValueThresholds.length * 9 / 10; i++) { if (pValuesSmoothed[i] < bestPValue) { bestIdx = i; bestPValue = pValuesSmoothed[i]; } } thresholds = bestIdx >= 0 ? new double[] { pValueThresholds[bestIdx] } : new double[0]; } // Split into different curves using the provided thresholds List<KaplanMeierData> kms = splitByThresholds(newScoreData, thresholds, censorThreshold, params != null && "Quartiles".equals(params.getChoiceParameterValue("scoreThresholdMethod"))); // for (KaplanMeier km : kms) // km.censorAtTime(censorThreshold); //// kmHigh.censorAtTime(censorThreshold); //// kmLow.censorAtTime(censorThreshold); // logger.info("High: " + kmHigh.toString()); // logger.info("Low: " + kmLow.toString()); // logger.info("Log rank comparison: {}", LogRankTest.computeLogRankTest(kmLow, kmHigh)); if (plotter == null) { plotter = new KaplanMeierChartWrapper(survivalColumn + " time"); // plotter.setBorder(BorderFactory.createTitledBorder("Survival plot")); // plotter.getCanvas().setWidth(300); // plotter.getCanvas().setHeight(300); } KaplanMeierData[] kmArray = new KaplanMeierData[kms.size()]; plotter.setKaplanMeierCurves(survivalColumn + " time", kms.toArray(kmArray)); tableModel.setSurvivalCurves(thresholds, params != null && params.getChoiceParameterValue("scoreThresholdMethod").equals("Lowest p-value"), kmArray); // Bar width determined using 'Freedman and Diaconis' rule' (but overridden if this gives < 16 bins...) double barWidth = (2 * q3 - q1) * Math.pow(numNonNaN, -1.0 / 3.0); int nBins = 100; if (!Double.isNaN(barWidth)) barWidth = (int) Math.max(16, Math.ceil((maxVal - minVal) / barWidth)); Histogram histogram = scoresValid ? new Histogram(newScoreData.scores, nBins) : null; if (histogramPanel == null) { GridPane paneHistogram = new GridPane(); histogramPanel = new HistogramPanelFX(); histogramPanel.getChart().setAnimated(false); histogramWrapper = new ThresholdedChartWrapper(histogramPanel.getChart()); for (ObservableNumberValue val : threshProperties) histogramWrapper.addThreshold(val, ColorToolsFX.getCachedColor(240, 0, 0, 128)); histogramWrapper.getPane().setPrefHeight(150); paneHistogram.add(histogramWrapper.getPane(), 0, 0); Tooltip.install(histogramPanel.getChart(), new Tooltip("Distribution of scores")); GridPane.setHgrow(histogramWrapper.getPane(), Priority.ALWAYS); GridPane.setVgrow(histogramWrapper.getPane(), Priority.ALWAYS); NumberAxis xAxis = new NumberAxis(); xAxis.setLabel("Score threshold"); NumberAxis yAxis = new NumberAxis(); yAxis.setLowerBound(0); yAxis.setUpperBound(1); yAxis.setTickUnit(0.1); yAxis.setAutoRanging(false); yAxis.setLabel("P-value"); chartPValues = new LineChart<>(xAxis, yAxis); chartPValues.setAnimated(false); chartPValues.setLegendVisible(false); // Make chart so it can be navigated ChartToolsFX.makeChartInteractive(chartPValues, xAxis, yAxis); pValuesChanged = true; Tooltip.install(chartPValues, new Tooltip( "Distribution of p-values (log-rank test) comparing low vs. high for all possible score thresholds")); // chartPValues.getYAxis().setAutoRanging(false); pValuesWrapper = new ThresholdedChartWrapper(chartPValues); for (ObservableNumberValue val : threshProperties) pValuesWrapper.addThreshold(val, ColorToolsFX.getCachedColor(240, 0, 0, 128)); pValuesWrapper.getPane().setPrefHeight(150); paneHistogram.add(pValuesWrapper.getPane(), 0, 1); GridPane.setHgrow(pValuesWrapper.getPane(), Priority.ALWAYS); GridPane.setVgrow(pValuesWrapper.getPane(), Priority.ALWAYS); ContextMenu popup = new ContextMenu(); ChartToolsFX.addChartExportMenu(chartPValues, popup); RadioMenuItem miZoomY1 = new RadioMenuItem("0-1"); miZoomY1.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(1); yAxis.setTickUnit(0.2); }); RadioMenuItem miZoomY05 = new RadioMenuItem("0-0.5"); miZoomY05.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(0.5); yAxis.setTickUnit(0.1); }); RadioMenuItem miZoomY02 = new RadioMenuItem("0-0.2"); miZoomY02.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(0.2); yAxis.setTickUnit(0.05); }); RadioMenuItem miZoomY01 = new RadioMenuItem("0-0.1"); miZoomY01.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(0.1); yAxis.setTickUnit(0.05); }); RadioMenuItem miZoomY005 = new RadioMenuItem("0-0.05"); miZoomY005.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(0.05); yAxis.setTickUnit(0.01); }); RadioMenuItem miZoomY001 = new RadioMenuItem("0-0.01"); miZoomY001.setOnAction(e -> { yAxis.setAutoRanging(false); yAxis.setUpperBound(0.01); yAxis.setTickUnit(0.005); }); ToggleGroup tgZoom = new ToggleGroup(); miZoomY1.setToggleGroup(tgZoom); miZoomY05.setToggleGroup(tgZoom); miZoomY02.setToggleGroup(tgZoom); miZoomY01.setToggleGroup(tgZoom); miZoomY005.setToggleGroup(tgZoom); miZoomY001.setToggleGroup(tgZoom); Menu menuZoomY = new Menu("Set y-axis range"); menuZoomY.getItems().addAll(miZoomY1, miZoomY05, miZoomY02, miZoomY01, miZoomY005, miZoomY001); MenuItem miCopyData = new MenuItem("Copy chart data"); miCopyData.setOnAction(e -> { String dataString = ChartToolsFX.getChartDataAsString(chartPValues); ClipboardContent content = new ClipboardContent(); content.putString(dataString); Clipboard.getSystemClipboard().setContent(content); }); popup.getItems().addAll(miCopyData, menuZoomY); chartPValues.setOnContextMenuRequested(e -> { popup.show(chartPValues, e.getScreenX(), e.getScreenY()); }); for (int col = 0; col < tableModel.getColumnCount(); col++) { TableColumn<Integer, String> column = new TableColumn<>(tableModel.getColumnName(col)); int colNumber = col; column.setCellValueFactory( new Callback<CellDataFeatures<Integer, String>, ObservableValue<String>>() { @Override public ObservableValue<String> call(CellDataFeatures<Integer, String> p) { return new SimpleStringProperty( (String) tableModel.getValueAt(p.getValue(), colNumber)); } }); column.setCellFactory(new Callback<TableColumn<Integer, String>, TableCell<Integer, String>>() { @Override public TableCell<Integer, String> call(TableColumn<Integer, String> param) { TableCell<Integer, String> cell = new TableCell<Integer, String>() { @Override protected void updateItem(String item, boolean empty) { super.updateItem(item, empty); setText(item); setTooltip(new Tooltip(item)); } }; return cell; } }); table.getColumns().add(column); } table.setPrefHeight(250); table.setColumnResizePolicy(TableView.CONSTRAINED_RESIZE_POLICY); table.maxHeightProperty().bind(table.prefHeightProperty()); params = new ParameterList(); // maxTimePoint = 0; // for (TMACoreObject core : hierarchy.getTMAGrid().getTMACoreList()) { // double os = core.getMeasurementList().getMeasurementValue(TMACoreObject.KEY_OVERALL_SURVIVAL); // double rfs = core.getMeasurementList().getMeasurementValue(TMACoreObject.KEY_RECURRENCE_FREE_SURVIVAL); // if (os > maxTimePoint) // maxTimePoint = os; // if (rfs > maxTimePoint) // maxTimePoint = rfs; // } params.addIntParameter("censorTimePoints", "Max censored time", (int) (censorThreshold + 0.5), null, 0, (int) Math.ceil(maxTimePoint), "Latest time point beyond which data will be censored"); // params.addChoiceParameter("scoreThresholdMethod", "Threshold method", "Manual", Arrays.asList("Manual", "Median", "Log-rank test")); if (calculateAllPValues) // Don't include "Lowest smoothed p-value" - it's not an established method and open to misinterpretation... params.addChoiceParameter("scoreThresholdMethod", "Threshold method", "Median", Arrays.asList("Manual (1)", "Manual (2)", "Manual (3)", "Median", "Tertiles", "Quartiles", "Lowest p-value")); // params.addChoiceParameter("scoreThresholdMethod", "Threshold method", "Median", Arrays.asList("Manual (1)", "Manual (2)", "Manual (3)", "Median", "Tertiles", "Quartiles", "Lowest p-value", "Lowest smoothed p-value")); else params.addChoiceParameter("scoreThresholdMethod", "Threshold method", "Median", Arrays.asList("Manual (1)", "Manual (2)", "Manual (3)", "Median", "Tertiles", "Quartiles")); params.addDoubleParameter("threshold1", "Threshold 1", thresholds.length > 0 ? thresholds[0] : (minVal + maxVal) / 2, null, "Threshold to distinguish between patient groups"); params.addDoubleParameter("threshold2", "Threshold 2", thresholds.length > 1 ? thresholds[1] : (minVal + maxVal) / 2, null, "Threshold to distinguish between patient groups"); params.addDoubleParameter("threshold3", "Threshold 3", thresholds.length > 2 ? thresholds[2] : (minVal + maxVal) / 2, null, "Threshold to distinguish between patient groups"); params.addBooleanParameter("showAtRisk", "Show at risk", plotter.getShowAtRisk(), "Show number of patients at risk below the plot"); params.addBooleanParameter("showTicks", "Show censored ticks", plotter.getShowCensoredTicks(), "Show ticks to indicate censored data"); params.addBooleanParameter("showKey", "Show key", plotter.getShowKey(), "Show key indicating display of each curve"); // params.addBooleanParameter("useColor", "Use color", plotter.getUseColor(), "Show each curve in a different color"); // params.addBooleanParameter("useStrokes", "Use strokes", plotter.getUseStrokes(), "Show each curve with a differed line stroke"); // Hide threshold parameters if threshold can't be used if (!scoresValid) { // params.setHiddenParameters(true, "scoreThresholdMethod", "scoreThreshold"); histogramPanel.getChart().setVisible(false); } panelParams = new ParameterPanelFX(params); panelParams.addParameterChangeListener(this); updateThresholdsEnabled(); for (int i = 0; i < threshProperties.length; i++) { String p = "threshold" + (i + 1); threshProperties[i].addListener((v, o, n) -> { if (interactiveThresholds()) { // Need to do a decent double check with tolerance to text field value changing while typing if (!GeneralTools.almostTheSame(params.getDoubleParameterValue(p), n.doubleValue(), 0.0001)) panelParams.setNumericParameterValue(p, n); } }); } BorderPane paneBottom = new BorderPane(); TitledPane paneOptions = new TitledPane("Options", panelParams.getPane()); // paneOptions.setCollapsible(false); Pane paneCanvas = new StackPane(); paneCanvas.getChildren().add(plotter.getCanvas()); GridPane paneLeft = new GridPane(); paneLeft.add(paneOptions, 0, 0); paneLeft.add(table, 0, 1); GridPane.setHgrow(paneOptions, Priority.ALWAYS); GridPane.setHgrow(table, Priority.ALWAYS); paneBottom.setLeft(paneLeft); paneBottom.setCenter(paneHistogram); paneMain.setCenter(paneCanvas); paneMain.setBottom(paneBottom); paneMain.setPadding(new Insets(10, 10, 10, 10)); } else if (thresholds.length > 0) { // Ensure the sliders/text fields are set sensibly if (!GeneralTools.almostTheSame(thresholds[0], params.getDoubleParameterValue("threshold1"), 0.0001)) { panelParams.setNumericParameterValue("threshold1", thresholds[0]); } if (thresholds.length > 1 && !GeneralTools.almostTheSame(thresholds[1], params.getDoubleParameterValue("threshold2"), 0.0001)) { panelParams.setNumericParameterValue("threshold2", thresholds[1]); } if (thresholds.length > 2 && !GeneralTools.almostTheSame(thresholds[2], params.getDoubleParameterValue("threshold3"), 0.0001)) { panelParams.setNumericParameterValue("threshold3", thresholds[2]); } } if (histogram != null) { histogramPanel.getHistogramData() .setAll(HistogramPanelFX.createHistogramData(histogram, false, (Color) null)); histogramPanel.getChart().getXAxis().setLabel(scoreColumn); histogramPanel.getChart().getYAxis().setLabel("Count"); ChartToolsFX.addChartExportMenu(histogramPanel.getChart(), null); // histogramWrapper.setVerticalLines(thresholds, ColorToolsFX.getCachedColor(240, 0, 0, 128)); // Deal with threshold adjustment // histogramWrapper.getThresholds().addListener((Observable o) -> generatePlot()); } if (pValues != null) { // TODO: Raise earlier where p-value calculation is if (pValuesChanged) { ObservableList<XYChart.Data<Number, Number>> data = FXCollections.observableArrayList(); for (int i = 0; i < pValueThresholds.length; i++) { double pValue = pValues[i]; if (Double.isNaN(pValue)) continue; data.add(new XYChart.Data<>(pValueThresholds[i], pValue, pValueThresholdsObserved[i])); } ObservableList<XYChart.Data<Number, Number>> dataSmoothed = null; if (pValuesSmoothed != null) { dataSmoothed = FXCollections.observableArrayList(); for (int i = 0; i < pValueThresholds.length; i++) { double pValueSmoothed = pValuesSmoothed[i]; if (Double.isNaN(pValueSmoothed)) continue; dataSmoothed.add(new XYChart.Data<>(pValueThresholds[i], pValueSmoothed)); } } // Don't bother showing the smoothed data... it tends to get in the way... // if (dataSmoothed != null) // chartPValues.getData().setAll(new XYChart.Series<>("P-values", data), new XYChart.Series<>("Smoothed P-values", dataSmoothed)); // else chartPValues.getData().setAll(new XYChart.Series<>("P-values", data)); // Add line to show 0.05 significance threshold if (pValueThresholds.length > 1) { Data<Number, Number> sigData1 = new Data<>(pValueThresholds[0], 0.05); Data<Number, Number> sigData2 = new Data<>(pValueThresholds[pValueThresholds.length - 1], 0.05); XYChart.Series<Number, Number> dataSignificant = new XYChart.Series<>("Signficance 0.05", FXCollections.observableArrayList(sigData1, sigData2)); chartPValues.getData().add(dataSignificant); sigData1.getNode().setVisible(false); sigData2.getNode().setVisible(false); } // chartPValues.getData().get(0).getNode().setVisible(true); // pValuesWrapper.clearThresholds(); for (XYChart.Data<Number, Number> dataPoint : data) { if (!Boolean.TRUE.equals(dataPoint.getExtraValue())) dataPoint.getNode().setVisible(false); } // if (dataSmoothed != null) { // for (XYChart.Data<Number, Number> dataPoint : dataSmoothed) { // dataPoint.getNode().setVisible(false); // } // chartPValues.getData().get(1).getNode().setOpacity(0.5); // } // int count = 0; // for (int i = 0; i < pValueThresholds.length; i++) { // double pValue = pValues[i]; // if (Double.isNaN(pValue)) // continue; // boolean observed = pValueThresholdsObserved[i]; //// if (observed) //// pValuesWrapper.addThreshold(new ReadOnlyDoubleWrapper(pValueThresholds[i]), Color.rgb(0, 0, 0, 0.05)); // // if (!observed) { //// StackPane pane = (StackPane)data.get(count).getNode(); //// pane.setEffect(new DropShadow()); // data.get(count).getNode().setVisible(false); // } // count++; // } } for (int i = 0; i < threshProperties.length; i++) { if (i < thresholds.length) threshProperties[i].set(thresholds[i]); else threshProperties[i].set(Double.NaN); } boolean isInteractive = interactiveThresholds(); histogramWrapper.setIsInteractive(isInteractive); pValuesWrapper.setIsInteractive(isInteractive); chartPValues.setVisible(true); } // else // chartPValues.setVisible(false); // Store values for next time scoreData = newScoreData; }
From source file:com.cdd.bao.editor.EditSchema.java
public void actionEditCopy(boolean andCut) { if (!treeView.isFocused()) return; // punt to default action TreeItem<Branch> item = currentBranch(); if (item == null) return;/* w ww.jav a 2s . com*/ Branch branch = item.getValue(); JSONObject json = null; if (branch.group != null) json = ClipboardSchema.composeGroup(branch.group); else if (branch.assignment != null) json = ClipboardSchema.composeAssignment(branch.assignment); else if (branch.assay != null) json = ClipboardSchema.composeAssay(branch.assay); String serial = null; try { serial = json.toString(2); } catch (JSONException ex) { return; } ClipboardContent content = new ClipboardContent(); content.putString(serial); if (!Clipboard.getSystemClipboard().setContent(content)) { Util.informWarning("Clipboard Copy", "Unable to copy to the clipboard."); return; } if (andCut) actionEditDelete(); }
From source file:com.cdd.bao.editor.EditSchema.java
public void actionEditCopyLayoutTSV() { TreeItem<Branch> item = currentBranch(); if (item == null) return;/* w ww .j a v a2 s.com*/ Branch branch = item.getValue(); String tsv = null; try { if (branch.group != null) tsv = ClipboardSchema.composeGroupTSV(branch.group); else if (branch.assignment != null) tsv = ClipboardSchema.composeAssignmentTSV(branch.assignment); if (tsv == null) { Util.informWarning("Clipboard Copy", "Select a branch or assignment to copy."); return; } } catch (Exception ex) { ex.printStackTrace(); return; } ClipboardContent content = new ClipboardContent(); content.putString(tsv); if (!Clipboard.getSystemClipboard().setContent(content)) { Util.informWarning("Clipboard Copy", "Unable to copy to the clipboard."); return; } }
From source file:fr.amap.lidar.amapvox.gui.MainFrameController.java
/** * Initializes the controller class.//from www . j a v a 2 s. com */ @Override public void initialize(URL url, ResourceBundle rb) { this.resourceBundle = rb; viewer3DPanelController.setResourceBundle(rb); initStrings(rb); colorPickerSeries.valueProperty().addListener(new ChangeListener<javafx.scene.paint.Color>() { @Override public void changed(ObservableValue<? extends javafx.scene.paint.Color> observable, javafx.scene.paint.Color oldValue, javafx.scene.paint.Color newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() == 1) { listViewVoxelsFilesChart.getSelectionModel().getSelectedItem().getSeriesParameters() .setColor(new Color((float) newValue.getRed(), (float) newValue.getGreen(), (float) newValue.getBlue(), 1.0f)); } } }); comboboxScript.getItems().setAll("Daniel script"); vboxWeighting.disableProperty().bind(checkboxEnableWeighting.selectedProperty().not()); checkboxEnableWeighting.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue && textAreaWeighting.getText().isEmpty()) { int selectedVoxTab = tabPaneVoxelisation.getSelectionModel().getSelectedIndex(); if (selectedVoxTab == 0) { //ALS fillWeightingData(EchoesWeightParams.DEFAULT_ALS_WEIGHTING); } else if (selectedVoxTab == 1) { //TLS fillWeightingData(EchoesWeightParams.DEFAULT_TLS_WEIGHTING); } } } }); /*comboboxTransMode.getItems().setAll(1, 2, 3); comboboxTransMode.getSelectionModel().selectFirst(); comboboxPathLengthMode.getItems().setAll("A", "B"); comboboxPathLengthMode.getSelectionModel().selectFirst();*/ helpButtonNaNsCorrection.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonNaNsCorrectionController.showHelpDialog(resourceBundle.getString("help_NaNs_correction")); } }); helpButtonAutoBBox.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonAutoBBoxController.showHelpDialog(resourceBundle.getString("help_bbox")); } }); helpButtonHemiPhoto.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { helpButtonHemiPhotoController.showHelpDialog(resourceBundle.getString("help_hemiphoto")); } }); buttonHelpEmptyShotsFilter.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { buttonHelpEmptyShotsFilterController .showHelpDialog(resourceBundle.getString("help_empty_shots_filter")); } }); /*work around, the divider positions values are defined in the fxml, but when the window is initialized the values are lost*/ Platform.runLater(new Runnable() { @Override public void run() { splitPaneMain.setDividerPositions(0.75f); splitPaneVoxelization.setDividerPositions(0.45f); } }); initValidationSupport(); initPostProcessTab(); listViewTransmittanceMapSensorPositions.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewTaskList.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); MenuItem menuItemPadValue1m = new MenuItem("1m voxel size"); addMenuItemPadValue(menuItemPadValue1m, 3.536958f); MenuItem menuItemPadValue2m = new MenuItem("2m voxel size"); addMenuItemPadValue(menuItemPadValue2m, 2.262798f); MenuItem menuItemPadValue3m = new MenuItem("3m voxel size"); addMenuItemPadValue(menuItemPadValue3m, 1.749859f); MenuItem menuItemPadValue4m = new MenuItem("4m voxel size"); addMenuItemPadValue(menuItemPadValue4m, 1.3882959f); MenuItem menuItemPadValue5m = new MenuItem("5m voxel size"); addMenuItemPadValue(menuItemPadValue5m, 1.0848f); menuButtonAdvisablePADMaxValues.getItems().addAll(menuItemPadValue1m, menuItemPadValue2m, menuItemPadValue3m, menuItemPadValue4m, menuItemPadValue5m); fileChooserSaveCanopyAnalyserOutputFile = new FileChooserContext(); fileChooserSaveCanopyAnalyserCfgFile = new FileChooserContext(); fileChooserSaveTransmittanceSimCfgFile = new FileChooserContext(); fileChooserOpenCanopyAnalyserInputFile = new FileChooserContext(); listViewCanopyAnalyzerSensorPositions.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); ContextMenu contextMenuProductsList = new ContextMenu(); MenuItem openImageItem = new MenuItem(RS_STR_OPEN_IMAGE); openImageItem.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedFile = listViewProductsFiles.getSelectionModel().getSelectedItem(); showImage(selectedFile); } }); Menu menuEdit = new Menu(RS_STR_EDIT); MenuItem menuItemEditVoxels = new MenuItem("Remove voxels (delete key)"); MenuItem menuItemFitToContent = new MenuItem("Fit to content"); MenuItem menuItemCrop = new MenuItem("Crop"); menuEdit.getItems().setAll(menuItemEditVoxels, menuItemFitToContent, menuItemCrop); menuItemFitToContent.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { fitVoxelSpaceToContent(selectedItem); } } }); menuItemEditVoxels.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { editVoxelSpace(selectedItem); } } }); menuItemCrop.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { try { voxelSpaceCroppingFrameController.setVoxelFile(selectedItem); voxelSpaceCroppingFrame.show(); } catch (Exception ex) { showErrorDialog(ex); } } } }); Menu menuExport = new Menu(RS_STR_EXPORT); MenuItem menuItemExportDartMaket = new MenuItem("Dart (maket.txt)"); MenuItem menuItemExportDartPlots = new MenuItem("Dart (plots.xml)"); MenuItem menuItemExportMeshObj = new MenuItem("Mesh (*.obj)"); menuItemExportDartMaket.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportDartMaket(selectedItem); } } }); menuItemExportDartPlots.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportDartPlots(selectedItem); } } }); menuItemExportMeshObj.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { exportMeshObj(selectedItem); } } }); menuExport.getItems().setAll(menuItemExportDartMaket, menuItemExportDartPlots, menuItemExportMeshObj); MenuItem menuItemInfo = new MenuItem(RS_STR_INFO); menuItemInfo.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { Alert alert = new Alert(AlertType.INFORMATION); File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { VoxelFileReader reader; try { reader = new VoxelFileReader(selectedItem); VoxelSpaceInfos voxelSpaceInfos = reader.getVoxelSpaceInfos(); alert.setTitle("Information"); alert.setHeaderText("Voxel space informations"); alert.setContentText(voxelSpaceInfos.toString()); alert.show(); } catch (Exception ex) { showErrorDialog(ex); } } } }); final MenuItem menuItemOpenContainingFolder = new MenuItem(RS_STR_OPEN_CONTAINING_FOLDER); menuItemOpenContainingFolder.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { final File selectedItem = listViewProductsFiles.getSelectionModel().getSelectedItem(); if (selectedItem != null) { if (Desktop.isDesktopSupported()) { new Thread(() -> { try { Desktop.getDesktop().open(selectedItem.getParentFile()); } catch (IOException ex) { logger.error("Cannot open directory " + selectedItem); } }).start(); } } } }); listViewProductsFiles.setOnContextMenuRequested(new EventHandler<ContextMenuEvent>() { @Override public void handle(ContextMenuEvent event) { if (listViewProductsFiles.getSelectionModel().getSelectedIndices().size() == 1) { File selectedFile = listViewProductsFiles.getSelectionModel().getSelectedItem(); String extension = FileManager.getExtension(selectedFile); switch (extension) { case ".png": case ".bmp": case ".jpg": contextMenuProductsList.getItems().setAll(openImageItem, menuItemOpenContainingFolder); contextMenuProductsList.show(listViewProductsFiles, event.getScreenX(), event.getScreenY()); break; case ".vox": default: if (VoxelFileReader.isFileAVoxelFile(selectedFile)) { contextMenuProductsList.getItems().setAll(menuItemInfo, menuItemOpenContainingFolder, menuEdit, menuExport); contextMenuProductsList.show(listViewProductsFiles, event.getScreenX(), event.getScreenY()); } } } } }); ContextMenu contextMenuLidarScanEdit = new ContextMenu(); MenuItem editItem = new MenuItem("Edit"); editItem.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent event) { filterFrameController.setFilters("Reflectance", "Deviation", "Amplitude"); filterFrame.show(); filterFrame.setOnHidden(new EventHandler<WindowEvent>() { @Override public void handle(WindowEvent event) { if (filterFrameController.getFilter() != null) { ObservableList<LidarScan> items = listViewHemiPhotoScans.getSelectionModel() .getSelectedItems(); for (LidarScan scan : items) { scan.filters.add(filterFrameController.getFilter()); } } } }); } }); contextMenuLidarScanEdit.getItems().add(editItem); listViewHemiPhotoScans.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewHemiPhotoScans.setOnContextMenuRequested(new EventHandler<ContextMenuEvent>() { @Override public void handle(ContextMenuEvent event) { contextMenuLidarScanEdit.show(listViewHemiPhotoScans, event.getScreenX(), event.getScreenY()); } }); /**LAD tab initialization**/ comboboxLADChoice.getItems().addAll(LeafAngleDistribution.Type.UNIFORM, LeafAngleDistribution.Type.SPHERIC, LeafAngleDistribution.Type.ERECTOPHILE, LeafAngleDistribution.Type.PLANOPHILE, LeafAngleDistribution.Type.EXTREMOPHILE, LeafAngleDistribution.Type.PLAGIOPHILE, LeafAngleDistribution.Type.HORIZONTAL, LeafAngleDistribution.Type.VERTICAL, LeafAngleDistribution.Type.ELLIPSOIDAL, LeafAngleDistribution.Type.ELLIPTICAL, LeafAngleDistribution.Type.TWO_PARAMETER_BETA); comboboxLADChoice.getSelectionModel().select(LeafAngleDistribution.Type.SPHERIC); comboboxLADChoice.getSelectionModel().selectedItemProperty() .addListener(new ChangeListener<LeafAngleDistribution.Type>() { @Override public void changed(ObservableValue<? extends LeafAngleDistribution.Type> observable, LeafAngleDistribution.Type oldValue, LeafAngleDistribution.Type newValue) { if (newValue == LeafAngleDistribution.Type.TWO_PARAMETER_BETA || newValue == LeafAngleDistribution.Type.ELLIPSOIDAL) { hboxTwoBetaParameters.setVisible(true); if (newValue == LeafAngleDistribution.Type.ELLIPSOIDAL) { labelLADBeta.setVisible(false); } else { labelLADBeta.setVisible(true); } } else { hboxTwoBetaParameters.setVisible(false); } } }); ToggleGroup ladTypeGroup = new ToggleGroup(); radiobuttonLADHomogeneous.setToggleGroup(ladTypeGroup); radiobuttonLADLocalEstimation.setToggleGroup(ladTypeGroup); /**CHART panel initialization**/ ToggleGroup profileChartType = new ToggleGroup(); radiobuttonPreDefinedProfile.setToggleGroup(profileChartType); radiobuttonFromVariableProfile.setToggleGroup(profileChartType); ToggleGroup profileChartRelativeHeightType = new ToggleGroup(); radiobuttonHeightFromAboveGround.setToggleGroup(profileChartRelativeHeightType); radiobuttonHeightFromBelowCanopy.setToggleGroup(profileChartRelativeHeightType); comboboxFromVariableProfile.disableProperty().bind(radiobuttonPreDefinedProfile.selectedProperty()); comboboxPreDefinedProfile.disableProperty().bind(radiobuttonFromVariableProfile.selectedProperty()); hboxMaxPADVegetationProfile.visibleProperty().bind(radiobuttonPreDefinedProfile.selectedProperty()); listViewVoxelsFilesChart.getSelectionModel().selectedIndexProperty() .addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() > 1) { colorPickerSeries.setDisable(true); } else if (listViewVoxelsFilesChart.getSelectionModel().getSelectedItems().size() == 1) { VoxelFileChart selectedItem = listViewVoxelsFilesChart.getSelectionModel() .getSelectedItem(); Color selectedItemColor = selectedItem.getSeriesParameters().getColor(); colorPickerSeries.setDisable(false); colorPickerSeries.setValue(new javafx.scene.paint.Color( selectedItemColor.getRed() / 255.0, selectedItemColor.getGreen() / 255.0, selectedItemColor.getBlue() / 255.0, 1.0)); if (newValue.intValue() >= 0) { textfieldLabelVoxelFileChart.setText( listViewVoxelsFilesChart.getItems().get(newValue.intValue()).label); } } } }); textfieldLabelVoxelFileChart.textProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { if (listViewVoxelsFilesChart.getSelectionModel().getSelectedIndex() >= 0) { listViewVoxelsFilesChart.getSelectionModel().getSelectedItem().label = newValue; } } }); listViewVoxelsFilesChart.getItems().addListener(new ListChangeListener<VoxelFileChart>() { @Override public void onChanged(ListChangeListener.Change<? extends VoxelFileChart> c) { while (c.next()) { } if (c.wasAdded() && c.getAddedSize() == c.getList().size()) { try { VoxelFileReader reader = new VoxelFileReader(c.getList().get(0).file); String[] columnNames = reader.getVoxelSpaceInfos().getColumnNames(); comboboxFromVariableProfile.getItems().clear(); comboboxFromVariableProfile.getItems().addAll(columnNames); comboboxFromVariableProfile.getSelectionModel().selectFirst(); } catch (Exception ex) { logger.error("Cannot read voxel file", ex); } } } }); anchorpaneQuadrats.disableProperty().bind(checkboxMakeQuadrats.selectedProperty().not()); comboboxSelectAxisForQuadrats.getItems().addAll("X", "Y", "Z"); comboboxSelectAxisForQuadrats.getSelectionModel().select(1); comboboxPreDefinedProfile.getItems().addAll("Vegetation (PAD)"); comboboxPreDefinedProfile.getSelectionModel().selectFirst(); radiobuttonSplitCountForQuadrats.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { textFieldSplitCountForQuadrats.setDisable(!newValue); textFieldLengthForQuadrats.setDisable(newValue); } }); ToggleGroup chartMakeQuadratsSplitType = new ToggleGroup(); radiobuttonLengthForQuadrats.setToggleGroup(chartMakeQuadratsSplitType); radiobuttonSplitCountForQuadrats.setToggleGroup(chartMakeQuadratsSplitType); /**Virtual measures panel initialization**/ comboboxHemiPhotoBitmapOutputMode.getItems().addAll("Pixel", "Color"); comboboxHemiPhotoBitmapOutputMode.getSelectionModel().selectFirst(); ToggleGroup virtualMeasuresChoiceGroup = new ToggleGroup(); toggleButtonLAI2000Choice.setToggleGroup(virtualMeasuresChoiceGroup); toggleButtonLAI2200Choice.setToggleGroup(virtualMeasuresChoiceGroup); comboboxChooseCanopyAnalyzerSampling.getItems().setAll(500, 4000, 10000); comboboxChooseCanopyAnalyzerSampling.getSelectionModel().selectFirst(); initEchoFiltering(); data = FXCollections.observableArrayList(); tableViewSimulationPeriods.setItems(data); tableViewSimulationPeriods.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); comboboxChooseDirectionsNumber.getItems().addAll(1, 6, 16, 46, 136, 406); comboboxChooseDirectionsNumber.getSelectionModel().select(4); ToggleGroup scannerPositionsMode = new ToggleGroup(); /*radiobuttonScannerPosSquaredArea.setToggleGroup(scannerPositionsMode); radiobuttonScannerPosFile.setToggleGroup(scannerPositionsMode);*/ tableColumnPeriod.setCellValueFactory( new Callback<TableColumn.CellDataFeatures<SimulationPeriod, String>, ObservableValue<String>>() { @Override public ObservableValue<String> call( TableColumn.CellDataFeatures<SimulationPeriod, String> param) { return new SimpleStringProperty(param.getValue().getPeriod().toString()); } }); tableColumnClearness.setCellValueFactory( new Callback<TableColumn.CellDataFeatures<SimulationPeriod, String>, ObservableValue<String>>() { @Override public ObservableValue<String> call( TableColumn.CellDataFeatures<SimulationPeriod, String> param) { return new SimpleStringProperty(String.valueOf(param.getValue().getClearnessCoefficient())); } }); checkboxMultiFiles.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { anchorpaneBoundingBoxParameters.setDisable(newValue); } }); hboxGenerateBitmapFiles.disableProperty().bind(checkboxGenerateBitmapFile.selectedProperty().not()); hboxGenerateTextFile.disableProperty().bind(checkboxGenerateTextFile.selectedProperty().not()); fileChooserOpenConfiguration = new FileChooser(); fileChooserOpenConfiguration.setTitle("Choose configuration file"); fileChooserSaveConfiguration = new FileChooserContext("cfg.xml"); fileChooserSaveConfiguration.fc.setTitle("Choose output file"); fileChooserOpenInputFileALS = new FileChooser(); fileChooserOpenInputFileALS.setTitle("Open input file"); fileChooserOpenInputFileALS.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Shot files", "*.sht"), new ExtensionFilter("Text Files", "*.txt"), new ExtensionFilter("Las Files", "*.las", "*.laz")); fileChooserOpenTrajectoryFileALS = new FileChooser(); fileChooserOpenTrajectoryFileALS.setTitle("Open trajectory file"); fileChooserOpenTrajectoryFileALS.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenOutputFileALS = new FileChooser(); fileChooserOpenOutputFileALS.setTitle("Choose output file"); fileChooserOpenInputFileTLS = new FileChooserContext(); fileChooserOpenInputFileTLS.fc.setTitle("Open input file"); fileChooserOpenInputFileTLS.fc.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt"), new ExtensionFilter("Rxp Files", "*.rxp"), new ExtensionFilter("Project Rsp Files", "*.rsp")); directoryChooserOpenOutputPathTLS = new DirectoryChooser(); directoryChooserOpenOutputPathTLS.setTitle("Choose output path"); directoryChooserOpenOutputPathALS = new DirectoryChooser(); directoryChooserOpenOutputPathALS.setTitle("Choose output path"); fileChooserSaveOutputFileTLS = new FileChooser(); fileChooserSaveOutputFileTLS.setTitle("Save voxel file"); fileChooserSaveTransmittanceTextFile = new FileChooser(); fileChooserSaveTransmittanceTextFile.setTitle("Save text file"); directoryChooserSaveTransmittanceBitmapFile = new DirectoryChooser(); directoryChooserSaveTransmittanceBitmapFile.setTitle("Choose output directory"); fileChooserSaveHemiPhotoOutputBitmapFile = new FileChooserContext("*.png"); fileChooserSaveHemiPhotoOutputBitmapFile.fc.setTitle("Save bitmap file"); directoryChooserSaveHemiPhotoOutputBitmapFile = new DirectoryChooser(); directoryChooserSaveHemiPhotoOutputBitmapFile.setTitle("Choose bitmap files output directory"); directoryChooserSaveHemiPhotoOutputTextFile = new DirectoryChooser(); directoryChooserSaveHemiPhotoOutputTextFile.setTitle("Choose text files output directory"); fileChooserSaveHemiPhotoOutputTextFile = new FileChooser(); fileChooserSaveHemiPhotoOutputTextFile.setTitle("Save text file"); fileChooserOpenVoxelFile = new FileChooser(); fileChooserOpenVoxelFile.setTitle("Open voxel file"); fileChooserOpenVoxelFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenPopMatrixFile = new FileChooser(); fileChooserOpenPopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenPopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenSopMatrixFile = new FileChooser(); fileChooserOpenSopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenSopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenVopMatrixFile = new FileChooser(); fileChooserOpenVopMatrixFile.setTitle("Choose matrix file"); fileChooserOpenVopMatrixFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenPonderationFile = new FileChooser(); fileChooserOpenPonderationFile.setTitle("Choose ponderation file"); fileChooserOpenPonderationFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Text Files", "*.txt")); fileChooserOpenDTMFile = new FileChooser(); fileChooserOpenDTMFile.setTitle("Choose DTM file"); fileChooserOpenDTMFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("DTM Files", "*.asc")); fileChooserOpenPointCloudFile = new FileChooser(); fileChooserOpenPointCloudFile.setTitle("Choose point cloud file"); fileChooserOpenPointCloudFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("TXT Files", "*.txt")); fileChooserOpenMultiResVoxelFile = new FileChooser(); fileChooserOpenMultiResVoxelFile.setTitle("Choose voxel file"); fileChooserOpenMultiResVoxelFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenOutputFileMultiRes = new FileChooser(); fileChooserOpenOutputFileMultiRes.setTitle("Save voxel file"); fileChooserAddTask = new FileChooser(); fileChooserAddTask.setTitle("Choose parameter file"); fileChooserAddTask.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("XML Files", "*.xml")); fileChooserSaveDartFile = new FileChooser(); fileChooserSaveDartFile.setTitle("Save dart file (.maket)"); fileChooserSaveDartFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Maket File", "*.maket")); fileChooserOpenOutputFileMerging = new FileChooser(); fileChooserOpenOutputFileMerging.setTitle("Choose voxel file"); fileChooserOpenOutputFileMerging.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("Voxel Files", "*.vox")); fileChooserOpenScriptFile = new FileChooser(); fileChooserOpenScriptFile.setTitle("Choose script file"); fileChooserSaveGroundEnergyOutputFile = new FileChooser(); fileChooserSaveGroundEnergyOutputFile.setTitle("Save ground energy file"); fileChooserOpenPointsPositionFile = new FileChooser(); fileChooserOpenPointsPositionFile.setTitle("Choose points file"); fileChooserOpenPointsPositionFile.getExtensionFilters().addAll(new ExtensionFilter("All Files", "*"), new ExtensionFilter("TXT Files", "*.txt")); try { viewCapsSetupFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/ViewCapsSetupFrame.fxml")); Parent root = loader.load(); viewCapsSetupFrameController = loader.getController(); viewCapsSetupFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/FilteringPaneComponent.fxml")); anchorPaneEchoFilteringRxp = loader.load(); filteringPaneController = loader.getController(); filteringPaneController.setFiltersNames("Reflectance", "Amplitude", "Deviation"); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { positionImporterFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/PositionImporterFrame.fxml")); Parent root = loader.load(); positionImporterFrameController = loader.getController(); positionImporterFrame.setScene(new Scene(root)); positionImporterFrameController.setStage(positionImporterFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { voxelSpaceCroppingFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/VoxelSpaceCroppingFrame.fxml")); Parent root = loader.load(); voxelSpaceCroppingFrameController = loader.getController(); voxelSpaceCroppingFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { attributsImporterFrame = new Stage(); FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/AttributsImporterFrame.fxml")); Parent root = loader.load(); attributsImporterFrameController = loader.getController(); attributsImporterFrame.setScene(new Scene(root)); attributsImporterFrameController.setStage(attributsImporterFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { textFileParserFrameController = TextFileParserFrameController.getInstance(); } catch (Exception ex) { logger.error("Cannot load fxml file", ex); } try { transformationFrameController = TransformationFrameController.getInstance(); transformationFrame = transformationFrameController.getStage(); } catch (Exception ex) { logger.error("Cannot load fxml file", ex); } updaterFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/update/UpdaterFrame.fxml")); Parent root = loader.load(); updaterFrameController = loader.getController(); updaterFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } riscanProjectExtractor = new RiscanProjectExtractor(); ptxProjectExtractor = new PTXProjectExtractor(); ptgProjectExtractor = new PTGProjectExtractor(); dateChooserFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/DateChooserFrame.fxml")); Parent root = loader.load(); dateChooserFrameController = loader.getController(); dateChooserFrame.setScene(new Scene(root)); dateChooserFrameController.setStage(dateChooserFrame); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } comboboxModeALS.getItems().addAll(RS_STR_INPUT_TYPE_LAS, RS_STR_INPUT_TYPE_LAZ, /*RS_STR_INPUT_TYPE_XYZ, */RS_STR_INPUT_TYPE_SHOTS); comboboxModeALS.getSelectionModel().selectedItemProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { if (newValue.equals(RS_STR_INPUT_TYPE_SHOTS)) { alsVoxValidationSupport.registerValidator(textFieldTrajectoryFileALS, false, Validators.unregisterValidator); } else { alsVoxValidationSupport.registerValidator(textFieldTrajectoryFileALS, false, Validators.fileExistValidator); } } }); comboboxModeTLS.getItems().setAll("Rxp scan", "Rsp project", "PTX", "PTG"/*, RS_STR_INPUT_TYPE_XYZ, RS_STR_INPUT_TYPE_SHOTS*/); comboboxGroundEnergyOutputFormat.getItems().setAll("txt", "png"); comboboxLaserSpecification.getItems().addAll(LaserSpecification.getPresets()); comboboxLaserSpecification.getSelectionModel().selectedItemProperty() .addListener(new ChangeListener<LaserSpecification>() { @Override public void changed(ObservableValue<? extends LaserSpecification> observable, LaserSpecification oldValue, LaserSpecification newValue) { DecimalFormatSymbols symb = new DecimalFormatSymbols(); symb.setDecimalSeparator('.'); DecimalFormat formatter = new DecimalFormat("#####.######", symb); textFieldBeamDiameterAtExit.setText(formatter.format(newValue.getBeamDiameterAtExit())); textFieldBeamDivergence.setText(formatter.format(newValue.getBeamDivergence())); } }); comboboxLaserSpecification.getSelectionModel().select(LaserSpecification.LMS_Q560); comboboxLaserSpecification.disableProperty().bind(checkboxCustomLaserSpecification.selectedProperty()); textFieldBeamDiameterAtExit.disableProperty() .bind(checkboxCustomLaserSpecification.selectedProperty().not()); textFieldBeamDivergence.disableProperty().bind(checkboxCustomLaserSpecification.selectedProperty().not()); listViewProductsFiles.getSelectionModel().setSelectionMode(SelectionMode.MULTIPLE); listViewProductsFiles.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { int size = listViewProductsFiles.getSelectionModel().getSelectedIndices().size(); if (size == 1) { viewer3DPanelController .updateCurrentVoxelFile(listViewProductsFiles.getSelectionModel().getSelectedItem()); } } }); listViewTaskList.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { int size = listViewTaskList.getSelectionModel().getSelectedIndices().size(); if (size == 1) { buttonLoadSelectedTask.setDisable(false); } else { buttonLoadSelectedTask.setDisable(true); } buttonExecute.setDisable(size == 0); } }); resetMatrices(); calculateMatrixFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/CalculateMatrixFrame.fxml")); Parent root = loader.load(); calculateMatrixFrameController = loader.getController(); calculateMatrixFrameController.setStage(calculateMatrixFrame); Scene scene = new Scene(root); calculateMatrixFrame.setScene(scene); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } filterFrame = new Stage(); try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/FilterFrame.fxml")); Parent root = loader.load(); filterFrameController = loader.getController(); filterFrameController.setStage(filterFrame); filterFrameController.setFilters("Angle"); filterFrame.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } try { FXMLLoader loader = new FXMLLoader(getClass().getResource("/fxml/export/ObjExporterDialog.fxml")); Parent root = loader.load(); objExporterController = loader.getController(); Stage s = new Stage(); objExporterController.setStage(s); s.setScene(new Scene(root)); } catch (IOException ex) { logger.error("Cannot load fxml file", ex); } textFieldResolution.textProperty().addListener(new ChangeListener<String>() { @Override public void changed(ObservableValue<? extends String> observable, String oldValue, String newValue) { voxelSpacePanelVoxelizationController.setResolution(Float.valueOf(newValue)); } }); textFieldResolution.textProperty().addListener(voxelSpacePanelVoxelizationController.getChangeListener()); checkboxUseDTMFilter.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (checkboxUseDTMFilter.isSelected()) { buttonOpenDTMFile.setDisable(false); textfieldDTMPath.setDisable(false); textfieldDTMValue.setDisable(false); checkboxApplyVOPMatrix.setDisable(false); labelDTMValue.setDisable(false); labelDTMPath.setDisable(false); } else { buttonOpenDTMFile.setDisable(true); textfieldDTMPath.setDisable(true); textfieldDTMValue.setDisable(true); checkboxApplyVOPMatrix.setDisable(true); labelDTMValue.setDisable(true); labelDTMPath.setDisable(true); } } }); checkboxUseVopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { buttonSetVOPMatrix.setDisable(!newValue); } }); checkboxUsePopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { checkBoxUseDefaultPopMatrix.setDisable(false); buttonOpenPopMatrixFile.setDisable(false); } else { checkBoxUseDefaultPopMatrix.setDisable(true); buttonOpenPopMatrixFile.setDisable(true); } } }); checkboxUseSopMatrix.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { checkBoxUseDefaultSopMatrix.setDisable(false); buttonOpenSopMatrixFile.setDisable(false); } else { checkBoxUseDefaultSopMatrix.setDisable(true); buttonOpenSopMatrixFile.setDisable(true); } } }); checkboxCalculateGroundEnergy.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { if (newValue) { anchorPaneGroundEnergyParameters.setDisable(false); } else { anchorPaneGroundEnergyParameters.setDisable(true); } } }); listviewRxpScans.getSelectionModel().selectedItemProperty().addListener(new ChangeListener<LidarScan>() { @Override public void changed(ObservableValue<? extends LidarScan> observable, LidarScan oldValue, LidarScan newValue) { if (newValue != null) { sopMatrix = newValue.matrix; updateResultMatrix(); } } }); comboboxModeTLS.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { switch (newValue.intValue()) { case 1: case 2: case 3: listviewRxpScans.setDisable(false); checkboxMergeAfter.setDisable(false); textFieldMergedFileName.setDisable(false); disableSopMatrixChoice(false); labelTLSOutputPath.setText("Output path"); break; default: listviewRxpScans.setDisable(true); checkboxMergeAfter.setDisable(true); textFieldMergedFileName.setDisable(true); //disableSopMatrixChoice(true); labelTLSOutputPath.setText("Output file"); } if (newValue.intValue() == 0 || newValue.intValue() == 1) { checkboxEmptyShotsFilter.setDisable(false); } else { checkboxEmptyShotsFilter.setDisable(true); } } }); tabPaneVoxelisation.getSelectionModel().selectedIndexProperty().addListener(new ChangeListener<Number>() { @Override public void changed(ObservableValue<? extends Number> observable, Number oldValue, Number newValue) { switch (newValue.intValue()) { case 1: disableSopMatrixChoice(false); disablePopMatrixChoice(false); checkboxEmptyShotsFilter.setDisable(false); break; default: disableSopMatrixChoice(true); disablePopMatrixChoice(true); checkboxEmptyShotsFilter.setDisable(true); } switch (newValue.intValue()) { case 0: checkboxCalculateGroundEnergy.setDisable(false); if (checkboxCalculateGroundEnergy.isSelected()) { anchorPaneGroundEnergyParameters.setDisable(true); checkboxCalculateGroundEnergy.setDisable(false); } anchorPaneEchoFiltering.getChildren().set(0, anchorPaneEchoFilteringClassifications); //anchorPaneEchoFilteringClassifications.setVisible(true); anchorpaneBoundingBoxParameters.setDisable(checkboxMultiFiles.isSelected()); hboxAutomaticBBox.setDisable(false); break; default: anchorPaneGroundEnergyParameters.setDisable(true); checkboxCalculateGroundEnergy.setDisable(true); anchorPaneEchoFiltering.getChildren().set(0, anchorPaneEchoFilteringRxp); //anchorPaneEchoFilteringClassifications.setVisible(false); anchorpaneBoundingBoxParameters.setDisable(false); hboxAutomaticBBox.setDisable(true); } } }); int availableCores = Runtime.getRuntime().availableProcessors(); sliderRSPCoresToUse.setMin(1); sliderRSPCoresToUse.setMax(availableCores); sliderRSPCoresToUse.setValue(availableCores); textFieldInputFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldTrajectoryFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileALS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldInputFileTLS.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileMerging.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldDTMPath.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldOutputFileGroundEnergy.setOnDragOver(DragAndDropHelper.dragOverEvent); listViewTaskList.setOnDragOver(DragAndDropHelper.dragOverEvent); listViewProductsFiles.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldVoxelFilePathTransmittance.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldOutputTextFilePath.setOnDragOver(DragAndDropHelper.dragOverEvent); textfieldOutputBitmapFilePath.setOnDragOver(DragAndDropHelper.dragOverEvent); textFieldInputFileALS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { textFieldInputFileALS.setText(file.getAbsolutePath()); selectALSInputMode(file); } } } event.setDropCompleted(success); event.consume(); } }); textFieldTrajectoryFileALS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { onTrajectoryFileChoosed(file); } } } event.setDropCompleted(success); event.consume(); } }); textFieldInputFileTLS.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles() && db.getFiles().size() == 1) { success = true; for (File file : db.getFiles()) { if (file != null) { onInputFileTLSChoosed(file); } } } event.setDropCompleted(success); event.consume(); } }); setDragDroppedSingleFileEvent(textFieldOutputFileALS); setDragDroppedSingleFileEvent(textFieldOutputFileMerging); setDragDroppedSingleFileEvent(textfieldDTMPath); setDragDroppedSingleFileEvent(textFieldOutputFileGroundEnergy); setDragDroppedSingleFileEvent(textfieldVoxelFilePathTransmittance); setDragDroppedSingleFileEvent(textfieldOutputTextFilePath); setDragDroppedSingleFileEvent(textfieldOutputBitmapFilePath); listViewTaskList.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles()) { success = true; for (File file : db.getFiles()) { addFileToTaskList(file); } } event.setDropCompleted(success); event.consume(); } }); listViewProductsFiles.setOnDragDropped(new EventHandler<DragEvent>() { @Override public void handle(DragEvent event) { Dragboard db = event.getDragboard(); boolean success = false; if (db.hasFiles()) { success = true; for (File file : db.getFiles()) { addFileToProductsList(file); } } event.setDropCompleted(success); event.consume(); } }); listViewProductsFiles.setOnDragDetected(new EventHandler<MouseEvent>() { @Override public void handle(MouseEvent event) { Dragboard db = listViewProductsFiles.startDragAndDrop(TransferMode.COPY); ClipboardContent content = new ClipboardContent(); content.putFiles(listViewProductsFiles.getSelectionModel().getSelectedItems()); db.setContent(content); event.consume(); } }); addPointcloudFilterComponent(); checkboxUsePointcloudFilter.selectedProperty().addListener(new ChangeListener<Boolean>() { @Override public void changed(ObservableValue<? extends Boolean> observable, Boolean oldValue, Boolean newValue) { hBoxPointCloudFiltering.setDisable(!newValue); ObservableList<Node> list = vBoxPointCloudFiltering.getChildren(); for (Node n : list) { if (n instanceof PointCloudFilterPaneComponent) { PointCloudFilterPaneComponent panel = (PointCloudFilterPaneComponent) n; panel.disableContent(!newValue); } } buttonAddPointcloudFilter.setDisable(!newValue); } }); //displayGThetaAllDistributions(); }