Example usage for java.util Vector contains

List of usage examples for java.util Vector contains

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Introduction

In this page you can find the example usage for java.util Vector contains.

Prototype

public boolean contains(Object o)

Source Link

Document

Returns true if this vector contains the specified element.

Usage

From source file:org.mahasen.util.SearchUtil.java

/**
 * @param searchParameters/*from  w  w w  .ja  va  2 s  .c o m*/
 * @return
 * @throws MahasenException
 * @throws InterruptedException
 */
public Vector<String> multipleOrSearch(Hashtable<String, Vector<String>> searchParameters)
        throws MahasenException, InterruptedException {
    ArrayList<SearchBean> searchValues = createSearchBeans(searchParameters);
    Vector<String> fileNames = new Vector<String>();

    Vector<Id> finalResultIds = new Vector<Id>();
    for (SearchBean searchBean : searchValues) {
        Vector<Id> resultIds;
        if (searchBean.isRangeBased()) {
            resultIds = getRangeSearchResultIds(searchBean.getPropertyName(), searchBean.getInitialValue(),
                    searchBean.getLastValue());

        } else {
            resultIds = getSearchResultIds(searchBean.getPropertyName(), searchBean.getInitialValue());

        }

        if (finalResultIds.isEmpty()) {
            finalResultIds.addAll(resultIds);
        } else {
            for (Id id : resultIds) {
                if (!finalResultIds.contains(id)) {
                    finalResultIds.add(id);
                }
            }
        }
    }
    fileNames = getResultantFileNames(finalResultIds);
    return fileNames;
}

From source file:EditorPaneExample10A.java

public URL[] findLinks(Document doc, String protocol) {
    Vector links = new Vector();
    Vector urlNames = new Vector();
    URL baseURL = (URL) doc.getProperty(Document.StreamDescriptionProperty);

    if (doc instanceof HTMLDocument) {
        HTMLDocument.Iterator iterator = ((HTMLDocument) doc).getIterator(HTML.Tag.A);
        for (; iterator.isValid(); iterator.next()) {
            AttributeSet attrs = iterator.getAttributes();
            Object linkAttr = attrs.getAttribute(HTML.Attribute.HREF);
            if (linkAttr instanceof String) {
                try {
                    URL linkURL = new URL(baseURL, (String) linkAttr);
                    if (protocol == null || protocol.equalsIgnoreCase(linkURL.getProtocol())) {
                        String linkURLName = linkURL.toString();
                        if (urlNames.contains(linkURLName) == false) {
                            urlNames.addElement(linkURLName);
                            links.addElement(linkURL);
                        }// w ww  .jav  a 2 s. co  m
                    }
                } catch (MalformedURLException e) {
                    // Ignore invalid links
                }
            }
        }
    }

    URL[] urls = new URL[links.size()];
    links.copyInto(urls);
    links.removeAllElements();
    urlNames.removeAllElements();

    return urls;
}

From source file:es.pode.administracion.presentacion.adminusuarios.modificarUsuario.ModificarUsuarioControllerImpl.java

private GrupoVOCheck[] obtenerGrupoCheck(GrupoVO[] grupoVO, UsuarioVO usuarioVO) {

    GrupoVOCheck[] resultado = null;/*w  ww  .ja v  a2s  . c  o  m*/
    resultado = new GrupoVOCheck[grupoVO.length];
    GrupoVO[] gruposUsuario = usuarioVO.getGrupos();
    Vector vRol = new Vector();

    for (int j = 0; j < gruposUsuario.length; j++) {
        vRol.add(gruposUsuario[j].getId());
    }

    for (int i = 0; i < grupoVO.length; i++) {
        GrupoVOCheck grupo = new GrupoVOCheck();
        grupo.setId(grupoVO[i].getId());
        grupo.setDescripcion(grupoVO[i].getDescripcion());
        grupo.setLoginUsuario(usuarioVO.getUsuario());
        if (vRol.contains(grupoVO[i].getId())) {
            grupo.setChecked(Boolean.TRUE);
        } else {
            grupo.setChecked(Boolean.FALSE);
        }
        resultado[i] = grupo;
    }

    return resultado;
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetSiteIdListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setSiteIdUI.getValues();
    Vector<String> samples = this.setSiteIdUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setSiteIdUI.displayMessage("Error: no subject to sample mapping file");
    }/*from  w  w  w .  j a va2 s  . c  om*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String site;
                if (samples.contains(sample)) {
                    site = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + site + "\t" + fields[2] + "\t" + sample + "\t" + fields[4] + "\t"
                        + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setSiteIdUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setSiteIdUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setSiteIdUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetPlatformsListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setPlatformsUI.getValues();
    Vector<String> samples = this.setPlatformsUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setPlatformsUI.displayMessage("Error: no subject to sample mapping file");
    }/*from  ww w.  j  a  v a  2 s.co  m*/
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String platform;
                if (samples.contains(sample)) {
                    platform = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + platform
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setPlatformsUI.displayMessage("Error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setPlatformsUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setPlatformsUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setPlatformsUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetAttribute1Listener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setAttribute1UI.getValues();
    Vector<String> samples = this.setAttribute1UI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setAttribute1UI.displayMessage("Error: no subject to sample mapping file");
    }//from   w  w w  .j a v  a2s . c o  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String attribute;
                if (samples.contains(sample)) {
                    attribute = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + fields[5] + "\t" + attribute + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            setAttribute1UI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setAttribute1UI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setAttribute1UI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setAttribute1UI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetAttribute2Listener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setAttribute2UI.getValues();
    Vector<String> samples = this.setAttribute2UI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setAttribute2UI.displayMessage("Error: no subject to sample mapping file");
    }//  www .ja  va2 s . c  o  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String attribute;
                if (samples.contains(sample)) {
                    attribute = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + fields[5] + "\t" + fields[6] + "\t" + attribute + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setAttribute2UI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setAttribute2UI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setAttribute2UI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setAttribute2UI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:fr.sanofi.fcl4transmart.controllers.listeners.geneExpression.SetTissueTypeListener.java

@Override
public void handleEvent(Event event) {
    // TODO Auto-generated method stub
    Vector<String> values = this.setTissueTypeUI.getValues();
    Vector<String> samples = this.setTissueTypeUI.getSamples();
    File file = new File(this.dataType.getPath().toString() + File.separator
            + this.dataType.getStudy().toString() + ".subject_mapping.tmp");
    File stsmf = ((GeneExpressionData) this.dataType).getStsmf();
    if (stsmf == null) {
        this.setTissueTypeUI.displayMessage("Error: no subject to sample mapping file");
    }// w  w  w. j  a v  a  2 s .c o  m
    try {
        FileWriter fw = new FileWriter(file);
        BufferedWriter out = new BufferedWriter(fw);
        out.write(
                "study_id\tsite_id\tsubject_id\tSAMPLE_ID\tPLATFORM\tTISSUETYPE\tATTR1\tATTR2\tcategory_cd\n");

        try {
            BufferedReader br = new BufferedReader(new FileReader(stsmf));
            String line = br.readLine();
            while ((line = br.readLine()) != null) {
                String[] fields = line.split("\t", -1);
                String sample = fields[3];
                String tissueType;
                if (samples.contains(sample)) {
                    tissueType = values.get(samples.indexOf(sample));
                } else {
                    br.close();
                    return;
                }
                out.write(fields[0] + "\t" + fields[1] + "\t" + fields[2] + "\t" + sample + "\t" + fields[4]
                        + "\t" + tissueType + "\t" + fields[6] + "\t" + fields[7] + "\t" + fields[8] + "\n");
            }
            br.close();
        } catch (Exception e) {
            this.setTissueTypeUI.displayMessage("File error: " + e.getLocalizedMessage());
            out.close();
            e.printStackTrace();
        }
        out.close();
        try {
            File fileDest;
            if (stsmf != null) {
                String fileName = stsmf.getName();
                stsmf.delete();
                fileDest = new File(this.dataType.getPath() + File.separator + fileName);
            } else {
                fileDest = new File(this.dataType.getPath() + File.separator
                        + this.dataType.getStudy().toString() + ".subject_mapping");
            }
            FileUtils.moveFile(file, fileDest);
            ((GeneExpressionData) this.dataType).setSTSMF(fileDest);
        } catch (IOException ioe) {
            this.setTissueTypeUI.displayMessage("File error: " + ioe.getLocalizedMessage());
            return;
        }
    } catch (Exception e) {
        this.setTissueTypeUI.displayMessage("Error: " + e.getLocalizedMessage());
        e.printStackTrace();
    }
    this.setTissueTypeUI.displayMessage("Subject to sample mapping file updated");
    WorkPart.updateSteps();
    WorkPart.updateFiles();
}

From source file:org.mahasen.util.PutUtil.java

/**
 * @param part/*from   w ww  .j  a  v  a  2 s  .co  m*/
 * @param parentFileName
 * @param partName
 * @throws MahasenConfigurationException
 * @throws PastException
 * @throws InterruptedException
 */
public void replicateFilePart(File part, String parentFileName, String partName)
        throws MahasenConfigurationException, PastException, InterruptedException, MahasenException {
    Vector<String> nodeIpsToPut = getNodeIpsToPut();

    String resourcePath = MahasenConstants.ROOT_REGISTRY_PATH + parentFileName;
    Id parentFileId = Id.build(String.valueOf(resourcePath.hashCode()));

    while (mahasenManager.lookupDHT(parentFileId) == null) {
        Thread.sleep(1000);
    }
    MahasenResource mahasenResourceToUpdate = mahasenManager.lookupDHT(parentFileId);

    getReplicaReference().put(partName, 0);

    Random random = new Random();

    Hashtable<String, Vector<String>> spittedPartsStoredIps = mahasenResourceToUpdate.getSplittedPartsIpTable();
    Vector<String> currentPartStoredIps = spittedPartsStoredIps.get(partName);
    List<String> replicateIds = new ArrayList<String>();
    final BlockFlag blockFlag = new BlockFlag(true, 3000);

    while (true) {

        if (nodeIpsToPut.size() >= MahasenConstants.NUMBER_OF_REPLICAS + 1) {
            if (getReplicaReference().get(partName) == MahasenConstants.NUMBER_OF_REPLICAS) {
                log.info("Success in replicating :" + getReplicaReference().get(partName) + " parts");
                break;
            }

            String nodeIp = nodeIpsToPut.get(random.nextInt(nodeIpsToPut.size()));

            if (!currentPartStoredIps.contains(nodeIp) && !replicateIds.contains(nodeIp)) {
                replicateIds.add(nodeIp);
                try {
                    sendReplicateRequest(nodeIp, part, partName, mahasenResourceToUpdate, parentFileId);
                } catch (URISyntaxException e) {
                    e.printStackTrace(); //To change body of catch statement use File | Settings | File Templates.
                }
            }
        } else {

            for (String ip : nodeIpsToPut) {
                if (!currentPartStoredIps.contains(ip)) {
                    try {
                        sendReplicateRequest(ip, part, partName, mahasenResourceToUpdate, parentFileId);
                    } catch (URISyntaxException e) {
                        e.printStackTrace();
                    }
                }
            }
            blockFlag.unblock();
            break;

        }

        if (blockFlag.isBlocked()) {

            mahasenManager.getNode().getEnvironment().getTimeSource().sleep(10);
        } else {
            throw new MahasenException("Time out in storing " + part.getName());
        }
        Thread.sleep(100);
    }
}

From source file:picocash.Picocash.java

@Action
public void managePayees() {
    Vector<Payee> payees = new Vector<Payee>(Services.getSelectedPersistenceMan().getAllPayees());

    ManagePayeesDialog dialog = new ManagePayeesDialog(getMainFrame(), payees, true);
    dialog.setVisible(true);//from w  w w  . jav  a  2  s.c o m
    if (dialog.getStatus() == DialogReturnStatus.OK) {
        log.debug("ManagePayeesDialog [OK]");
        Vector<Payee> oldPayees = new Vector<Payee>(Services.getSelectedPersistenceMan().getAllPayees());
        for (Payee payee : payees) {
            Services.getSelectedPersistenceMan().persist(payee);
            setChangesAvailable(true);
        }

        for (Payee payee : oldPayees) {
            if (!payees.contains(payee)) {
                List<Transaction> transactions = Services.getSelectedPersistenceMan()
                        .getAllTransactionsForPayee(payee);
                for (Transaction transaction : transactions) {
                    transaction.setPayee(null);
                }
                Services.getSelectedPersistenceMan().delete(payee);
                setChangesAvailable(true);
                if (log.isDebugEnabled()) {
                    log.debug("old payee [" + payee.getName() + "] deleted");
                }
            }
        }

    } else if (dialog.getStatus() == DialogReturnStatus.CANCEL) {
        log.debug("ManagePayeesDialog [CANCEL]");
    } else {
        throw new IllegalStateException("ManagePayeesDialog not closed with ReturnStatus");
    }
}