Example usage for java.util TreeSet add

List of usage examples for java.util TreeSet add

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Introduction

In this page you can find the example usage for java.util TreeSet add.

Prototype

public boolean add(E e)

Source Link

Document

Adds the specified element to this set if it is not already present.

Usage

From source file:gdsc.smlm.results.TraceManager.java

/**
 * @return The traces that have been found using {@link #traceMolecules(double, int)}
 *///from w  ww . ja va 2s  .com
public Trace[] getTraces() {
    // No tracing yet performed or no thresholds
    if (totalTraces == localisations.length) {
        if (filterActivationFrames) {
            ArrayList<Trace> traces = new ArrayList<Trace>();
            for (int index = 0; index < totalTraces; index++) {
                PeakResult peakResult = results.getResults().get(localisations[index].id);
                if (!outsideActivationWindow(peakResult.peak))
                    traces.add(new Trace(peakResult));
            }
            return traces.toArray(new Trace[traces.size()]);
        } else {
            Trace[] traces = new Trace[localisations.length];
            for (int index = 0; index < traces.length; index++)
                traces[index] = new Trace(results.getResults().get(localisations[index].id));
            return traces;
        }
    }

    if (tracker != null)
        tracker.progress(0);

    // Build the list of traces
    Trace[] traces = new Trace[getTotalTraces()];
    int n = 0;

    //for (int index = 0; index < localisations.length; index++)
    //   if (localisations[index].trace == 0)
    //      System.out.printf("error @ %d\n", index);

    // Since the trace numbers are allocated by processing the spots in frames, each frame can have 
    // trace number out-of-order. This occurs if re-allocation has been performed,
    // e.g.  [1,2,2,1,3] => [1,2,5,4,3] when spots in group 1 are reallocated before spots in group 2.

    TreeSet<Integer> processedTraces = new TreeSet<Integer>();
    for (int index = 0; index < localisations.length; index++) {
        if (tracker != null && index % 256 == 0)
            tracker.progress(index, localisations.length);

        final int traceId = localisations[index].trace;

        if (processedTraces.contains(traceId))
            continue;
        processedTraces.add(traceId);

        if (filterActivationFrames && outsideActivationWindow(localisations[index].t))
            continue;

        PeakResult peakResult = results.getResults().get(localisations[index].id);

        Trace nextTrace = new Trace(peakResult);
        final int tLimit = maxT[traceId];

        // Check if the trace has later frames
        if (tLimit > localisations[index].t) {
            for (int j = index + 1; j < localisations.length; j++) {
                if (localisations[j].t > tLimit) {
                    //for (; j < localisations.length; j++)
                    //   if (localisations[j].trace == traceId)
                    //      System.out.printf("missed %d\n", j);
                    break;
                }
                if (localisations[j].trace == traceId)
                    nextTrace.add(results.getResults().get(localisations[j].id));
            }
        }

        //// DEBUG: Check the trace does not contain two localisations from the same time frame.
        //// This should be handled by the findAlternativeForerunner code.
        //int[] time = new int[nextTrace.size()];
        //int count = 0;
        //for (PeakResult p : nextTrace.getPoints())
        //{
        //   for (int i = 0; i < count; i++)
        //      if (time[i] == p.peak)
        //         System.out.println("Trace contains multiple localisations from the same frame");
        //   time[count++] = p.peak;
        //}

        traces[n++] = nextTrace;
    }

    if (tracker != null)
        tracker.progress(1.0);

    return traces;
}

From source file:net.spfbl.core.Analise.java

public static TreeSet<String> getIPv4Set(String hostname) {
    TreeSet<String> ipv4Set = new TreeSet<String>();
    try {//w  w w .ja va 2 s  .com
        Attributes attributesA = Server.getAttributesDNS(hostname, new String[] { "A" });
        if (attributesA != null) {
            Enumeration enumerationA = attributesA.getAll();
            while (enumerationA.hasMoreElements()) {
                Attribute attributeA = (Attribute) enumerationA.nextElement();
                NamingEnumeration enumeration = attributeA.getAll();
                while (enumeration.hasMoreElements()) {
                    String address = (String) enumeration.next();
                    if (SubnetIPv4.isValidIPv4(address)) {
                        address = SubnetIPv4.normalizeIPv4(address);
                        ipv4Set.add(address);
                    }
                }
            }
        }
    } catch (NameNotFoundException ex) {
        return null;
    } catch (NamingException ex) {
        // Ignore.
    }
    return ipv4Set;
}

From source file:biz.wolschon.fileformats.gnucash.jwsdpimpl.GnucashFileWritingImpl.java

/**
 *
 * @return a read-only collection of all accounts
 *//*from  ww w  .  j  a v a  2  s  .  c  om*/
@SuppressWarnings("unchecked")
public Collection<GnucashWritableAccount> getWritableAccounts() {
    TreeSet<GnucashWritableAccount> retval = new TreeSet();
    for (GnucashAccount account : getAccounts()) {
        retval.add((GnucashWritableAccount) account);
    }
    return retval;
}

From source file:net.spfbl.core.Analise.java

public static TreeSet<String> getIPSet(String hostname) {
    TreeSet<String> ipSet = new TreeSet<String>();
    try {/*ww w. j av a  2s  .  com*/
        Attributes attributesA = Server.getAttributesDNS(hostname, new String[] { "A" });
        if (attributesA != null) {
            Enumeration enumerationA = attributesA.getAll();
            while (enumerationA.hasMoreElements()) {
                Attribute attributeA = (Attribute) enumerationA.nextElement();
                NamingEnumeration enumeration = attributeA.getAll();
                while (enumeration.hasMoreElements()) {
                    String address = (String) enumeration.next();
                    if (SubnetIPv4.isValidIPv4(address)) {
                        address = SubnetIPv4.normalizeIPv4(address);
                        ipSet.add(address);
                    }
                }
            }
        }
        Attributes attributesAAAA = Server.getAttributesDNS(hostname, new String[] { "AAAA" });
        if (attributesAAAA != null) {
            Enumeration enumerationAAAA = attributesAAAA.getAll();
            while (enumerationAAAA.hasMoreElements()) {
                Attribute attributeAAAA = (Attribute) enumerationAAAA.nextElement();
                NamingEnumeration enumeration = attributeAAAA.getAll();
                while (enumeration.hasMoreElements()) {
                    String address = (String) enumeration.next();
                    if (SubnetIPv6.isValidIPv6(address)) {
                        address = SubnetIPv6.normalizeIPv6(address);
                        ipSet.add(address);
                    }
                }
            }
        }
    } catch (NameNotFoundException ex) {
        return null;
    } catch (NamingException ex) {
        // Ignore.
    }
    return ipSet;
}

From source file:com.hichinaschool.flashcards.anki.CardEditor.java

private void actualizeTagDialog(StyledDialog ad) {
    TreeSet<String> tags = new TreeSet<String>(String.CASE_INSENSITIVE_ORDER);
    for (String tag : mCol.getTags().all()) {
        tags.add(tag);
    }// ww w  .j a  v  a 2 s  .  com
    tags.addAll(selectedTags);
    int len = tags.size();
    allTags = new String[len];
    boolean[] checked = new boolean[len];
    int i = 0;
    for (String t : tags) {
        allTags[i++] = t;
        if (selectedTags.contains(t)) {
            checked[i - 1] = true;
        }
    }
    ad.setMultiChoiceItems(allTags, checked, new DialogInterface.OnClickListener() {
        @Override
        public void onClick(DialogInterface arg0, int which) {
            String tag = allTags[which];
            if (selectedTags.contains(tag)) {
                // Log.i(AnkiDroidApp.TAG, "unchecked tag: " + tag);
                selectedTags.remove(tag);
            } else {
                // Log.i(AnkiDroidApp.TAG, "checked tag: " + tag);
                selectedTags.add(tag);
            }
        }
    });
}

From source file:net.spfbl.core.Analise.java

public static TreeSet<String> getIPv6Set(String hostname) {
    TreeSet<String> ipv6Set = new TreeSet<String>();
    try {/*from w w  w. j av  a 2 s  . c o m*/
        Attributes attributesAAAA = Server.getAttributesDNS(hostname, new String[] { "AAAA" });
        if (attributesAAAA != null) {
            Enumeration enumerationAAAA = attributesAAAA.getAll();
            while (enumerationAAAA.hasMoreElements()) {
                Attribute attributeAAAA = (Attribute) enumerationAAAA.nextElement();
                NamingEnumeration enumeration = attributeAAAA.getAll();
                while (enumeration.hasMoreElements()) {
                    String address = (String) enumeration.next();
                    if (SubnetIPv6.isValidIPv6(address)) {
                        address = SubnetIPv6.normalizeIPv6(address);
                        ipv6Set.add(address);
                    }
                }
            }
        }
    } catch (NameNotFoundException ex) {
        return null;
    } catch (NamingException ex) {
        // Ignore.
    }
    return ipv6Set;
}

From source file:net.spfbl.core.Peer.java

public TreeSet<Peer> getSendSet() {
    TreeSet<Peer> peerSet = new TreeSet<Peer>();
    for (Peer peer : getSet()) {
        if (!peer.equals(this)) {
            switch (peer.getSendStatus()) {
            case BLOCK:
            case ALWAYS:
            case REPASS:
                peerSet.add(peer);
                break;
            }//from  w w w .j  av  a 2s  .co  m
        }
    }
    return peerSet;
}

From source file:com.jaspersoft.jasperserver.test.ReportSchedulingTestTestNG.java

private void testListJobs(long jobId_01, long jobId_02, String userName) {
    // test Mail Notification
    ReportJobModel criteria = new ReportJobModel();
    ReportJobMailNotificationModel mailNotificationModel = new ReportJobMailNotificationModel();
    mailNotificationModel.setSubject("updated subject");
    criteria.setMailNotificationModel(mailNotificationModel);
    ArrayList<Long> expectedJob01 = new ArrayList<Long>();
    expectedJob01.add(jobId_01);//from  www .jav  a  2 s .c  om
    compareResult(criteria, expectedJob01);
    // test base report job
    criteria = new ReportJobModel();
    criteria.setLabel("foo");
    compareResult(criteria, expectedJob01);
    // test output format
    criteria = new ReportJobModel();
    Set<Byte> outputFormats = new HashSet<Byte>();
    outputFormats.add(ReportJob.OUTPUT_FORMAT_PDF);
    criteria.setOutputFormatsSet(outputFormats);
    ArrayList<Long> expectedJobBOTH = new ArrayList<Long>();
    expectedJobBOTH.add(jobId_01);
    expectedJobBOTH.add(jobId_02);
    compareResult(criteria, expectedJobBOTH);
    // test user name
    criteria = new ReportJobModel();
    criteria.setUsername(userName);
    compareResult(criteria, expectedJobBOTH);

    // test trigger
    criteria = new ReportJobModel();
    ReportJobCalendarTriggerModel reportJobCalendarTriggerModel = new ReportJobCalendarTriggerModel();
    TreeSet months = new TreeSet();
    months.add(new Byte((byte) 1));
    months.add(new Byte((byte) 2));
    months.add(new Byte((byte) 3));
    reportJobCalendarTriggerModel.setMonths(months);
    criteria.setTriggerModel(reportJobCalendarTriggerModel);
    ArrayList<Long> expectedJob02 = new ArrayList<Long>();
    expectedJob02.add(jobId_02);
    compareResult(criteria, expectedJob02);
    // test data source
    criteria = new ReportJobModel();
    ReportJobSourceModel reportJobSourceModel = new ReportJobSourceModel();
    reportJobSourceModel.setReportUnitURI("/test/reportURI");
    criteria.setSourceModel(reportJobSourceModel);
    compareResult(criteria, expectedJob01);
    // test repository destination
    criteria = new ReportJobModel();
    ReportJobRepositoryDestinationModel reportJobRepositoryDestinationModel = new ReportJobRepositoryDestinationModel();
    reportJobRepositoryDestinationModel.setSequentialFilenames(false);
    criteria.setContentRepositoryDestinationModel(reportJobRepositoryDestinationModel);
    compareResult(criteria, expectedJob02);
    // test ftp info
    criteria = new ReportJobModel();
    reportJobRepositoryDestinationModel = new ReportJobRepositoryDestinationModel();
    FTPInfoModel ftpInfoModel = new FTPInfoModel();
    ftpInfoModel.setUserName("JohnSmith");
    reportJobRepositoryDestinationModel.setOutputFTPInfoModel(ftpInfoModel);
    criteria.setContentRepositoryDestinationModel(reportJobRepositoryDestinationModel);
    compareResult(criteria, expectedJob02);
    // should return none
    criteria.setMailNotificationModel(mailNotificationModel);
    compareResult(criteria, new ArrayList<Long>());
    // text email
    criteria = new ReportJobModel();
    mailNotificationModel = new ReportJobMailNotificationModel();
    ArrayList<String> toAddress = new ArrayList<String>();
    toAddress.add("peter@pan.com");
    mailNotificationModel.setToAddresses(toAddress);
    criteria.setMailNotificationModel(mailNotificationModel);
    compareResult(criteria, expectedJob02);
}

From source file:edu.umd.cs.submitServer.filters.RegisterStudentsFilter.java

@Override
public void doFilter(ServletRequest req, ServletResponse resp, FilterChain chain)
        throws IOException, ServletException {
    HttpServletRequest request = (HttpServletRequest) req;
    HttpServletResponse response = (HttpServletResponse) resp;
    if (!request.getMethod().equals("POST")) {
        throw new ServletException("Only POST accepted");
    }//from  ww w . jav  a2 s.  com
    Connection conn = null;
    BufferedReader reader = null;
    FileItem fileItem = null;
    TreeSet<StudentRegistration> registeredStudents = new TreeSet<StudentRegistration>();
    List<String> errors = new ArrayList<String>();
    try {
        conn = getConnection();

        // MultipartRequestFilter is required
        MultipartRequest multipartRequest = (MultipartRequest) request.getAttribute(MULTIPART_REQUEST);

        Course course = (Course) request.getAttribute("course");

        // open the uploaded file
        fileItem = multipartRequest.getFileItem();
        reader = new BufferedReader(new InputStreamReader(fileItem.getInputStream()));

        int lineNumber = 1;

        while (true) {
            String line = reader.readLine();
            if (line == null)
                break;
            lineNumber++;

            // hard-coded skip of first two lines for Maryland-specific
            // format
            if (line.startsWith("Last,First,UID,section,ClassAcct,DirectoryID"))
                continue;
            if (line.startsWith(",,,,,")) {
                if (line.equals(",,,,,"))
                    continue;
                String ldap = line.substring(5);
                Student student = Student.lookupByLoginName(ldap, conn);
                if (student != null) {
                    StudentRegistration sr = StudentForUpload.registerStudent(course, student, "", ldap, null,
                            conn);
                    registeredStudents.add(sr);
                } else
                    errors.add("Did not find " + ldap);

                continue;

            }
            if (line.startsWith("#"))
                continue;

            // skip blank lines
            if (line.trim().equals(""))
                continue;

            try {
                StudentForUpload s = new StudentForUpload(line, delimiter);

                Student student = s.lookupOrInsert(conn);
                StudentRegistration sr = StudentForUpload.registerStudent(course, student, s.section,
                        s.classAccount, null, conn);
                registeredStudents.add(sr);

            } catch (IllegalStateException e) {
                errors.add(e.getMessage());
                ServletExceptionFilter.logError(conn, ServerError.Kind.EXCEPTION, request,
                        "error while registering " + line, null, e);

            } catch (Exception e1) {
                errors.add("Problem processing line: '" + line + "' at line number: " + lineNumber);
                ServletExceptionFilter.logError(conn, ServerError.Kind.EXCEPTION, request,
                        "error while registering " + line, null, e1);
            }
        }
    } catch (SQLException e) {
        throw new ServletException(e);
    } finally {
        releaseConnection(conn);
        if (reader != null)
            reader.close();
        if (fileItem != null)
            fileItem.delete();
    }
    request.setAttribute("registeredStudents", registeredStudents);
    request.setAttribute("errors", errors);
    chain.doFilter(request, response);
}

From source file:edu.ucla.stat.SOCR.analyses.gui.AnovaTwoWay.java

protected void doGraph() {
    graphPanel.removeAll();//from   w w w  . j  a  v a  2s  . c  o m
    // 1. Box plot of data: yData vs. xData (where xData is categorical)
    JPanel innerPanel = new JPanel();
    JScrollPane graphPane = new JScrollPane(innerPanel, JScrollPane.VERTICAL_SCROLLBAR_ALWAYS,
            JScrollPane.HORIZONTAL_SCROLLBAR_ALWAYS);

    graphPanel.add(graphPane);
    innerPanel.setLayout(new BoxLayout(innerPanel, BoxLayout.Y_AXIS));
    graphPanel.setLayout(new BoxLayout(graphPanel, BoxLayout.Y_AXIS));

    String[][] xNameData = new String[seriesCount][categoryCount]; // xNameData: category names.
    //////System.out.println("xNameData = "+xNameData.length);
    for (int i = 0; i < seriesCount; i++) {
        for (int j = 0; j < categoryCount; j++) {
            xNameData[i][j] = categoryName[j];
            //////System.out.println("xNameData = " + xNameData[i][j]);
        }
    }

    /* the parameters to be passed are:
    1.boxPlotTitle, xAxisLabel, YAxisLabel.
    2. serieCount, categoryCount
    3. seriesname (e.g. sex, race, etc)
    4. category's name (e.g. height, weight, etc)--xData
    5. yValue(double),
    */
    ChartPanel chartPanel = null;
    double xDataDouble[] = null;
    TreeSet<String> treeSet = new TreeSet<String>();
    String groupLegend = "";
    boolean groupHasChar = false;
    // 1. scatter plot of data: yData vs. xData
    try {
        for (int i = xDataArray.length - 1; i >= 0; i--) {
            xData = xDataArray[i];
            xDataDouble = new double[xData.length];
            try {
                for (int j = 0; j < xData.length; j++) {
                    xDataDouble[j] = (new Double(xData[j])).doubleValue();
                }
            } catch (Exception e) {
                for (int j = 0; j < xData.length; j++) {
                    treeSet.add((String) xData[j]);
                }
                groupHasChar = true;
            }

            Iterator iterator = treeSet.iterator();
            int groupIndex = 1;
            String groupName = null;
            while (iterator.hasNext()) {
                groupName = (String) iterator.next();
                //xDataDouble[groupIndex-1] = groupIndex;
                groupLegend += ("\t" + groupName + "=" + groupIndex + "  ");
                for (int j = 0; j < xData.length; j++) {
                    if (xData[j].equalsIgnoreCase(groupName)) { // xData[i] is a String.
                        xDataDouble[j] = (double) groupIndex;
                    }
                }
                groupIndex++;

            }
            independentHeader = independentHeaderArray[i];
            //JFreeChart scatterChart = chartFactory.getLineChart("Scatter Plot of " + dependentHeader + " vs. " + independentHeader, independentHeader, dependentHeader, xDataDouble, yData);//getChart(title, xlabel, ylabel, xdata,ydata)

            JFreeChart scatterChart = chartFactory.getQQChart(
                    "Scatter Plot of " + dependentHeader + " vs. " + independentHeader, independentHeader,
                    dependentHeader, "Residuals  ", xDataDouble, yData, "   " + groupLegend, 0, 0, "");
            ////System.out.println("doGraph dependentHeader = " + dependentHeader);
            ////System.out.println("doGraph independentHeader = " + independentHeader);
            chartPanel = new ChartPanel(scatterChart, false);
            chartPanel.setPreferredSize(new Dimension(plotWidth, plotHeight));
            innerPanel.add(chartPanel);

            if (groupHasChar) {
                groupLegend = "Group Names for " + independentHeaderArray[i] + ": " + groupLegend;
                /*JLabel legendLabel1 = new JLabel(groupLegend);
                legendLabel1.setBackground(Color.WHITE);
                JPanel labelPanel1 = new JPanel();
                labelPanel1.add(legendLabel1, BorderLayout.NORTH);
                innerPanel.add(labelPanel1);
                */
            }
            groupLegend = "";
            treeSet = new TreeSet<String>();

        }
    } catch (Exception e) {
        ////System.out.println("doGraph Scatter Exception = " + e);

    }

    groupHasChar = false;
    // 2. residual on fit plot: residuals vs. predicted

    //JFreeChart rfChart = chartFactory.getLineChart("Residual on Fit Plot", "Predicted", "Residuals", predicted, residuals, "Other Stuff");
    JFreeChart rfChart = chartFactory.getQQChart("Residual on Fit Plot", "Predicted " + dependentHeader,
            "Residuals", "Residuals  ", predicted, residuals, "At Residual = 0", 0, 0, "");

    for (int i = 0; i < predicted.length; i++) {
        //System.out.println("predicted["+i+"] = " + predicted[i] + ". residuals["+i+"] = " + residuals[i]);
    }
    chartPanel = new ChartPanel(rfChart, false);
    chartPanel.setPreferredSize(new Dimension(plotWidth, plotHeight));
    innerPanel.add(chartPanel);

    // 3. residual on fit plot: residuals vs. xData
    xDataDouble = new double[xData.length];
    groupLegend = "";
    boolean useStringLegent = false;
    treeSet = new TreeSet<String>();
    try {
        for (int i = xDataArray.length - 1; i >= 0; i--) {
            xData = xDataArray[i];
            xDataDouble = new double[xData.length];
            try {
                for (int j = 0; j < xData.length; j++) {
                    xDataDouble[j] = (new Double(xData[j])).doubleValue();
                }
            } catch (Exception e) {
                for (int j = 0; j < xData.length; j++) {
                    treeSet.add((String) xData[j]);
                }
                groupHasChar = true;
            }

            Iterator<String> iterator = treeSet.iterator();
            int groupIndex = 1;
            String groupName = null;
            while (iterator.hasNext()) {
                groupName = (String) iterator.next();
                //xDataDouble[groupIndex-1] = groupIndex;
                groupLegend += ("\t" + groupName + "=" + groupIndex + "  ");
                for (int j = 0; j < xData.length; j++) {
                    if (xData[j].equalsIgnoreCase(groupName)) { // xData[i] is a String.
                        xDataDouble[j] = (double) groupIndex;
                    }
                }
                groupIndex++;

            }

            independentHeader = independentHeaderArray[i];
            //JFreeChart scatterChart = chartFactory.getLineChart("Residual on Covariate Plot, Residual vs. " + independentHeaderArray[i], independentHeaderArray[i], dependentHeader, xDataDouble, residuals, "Other Stuff 2");//getChart(title, xlabel, ylabel, xdata,ydata)
            JFreeChart scatterChart = chartFactory.getQQChart(
                    "Residual on Covariate Plot: Variable = " + independentHeaderArray[i],
                    independentHeaderArray[i], "Residuals", "Residual  ", xDataDouble, residuals,
                    "   " + groupLegend, 0, 0, "noline");

            chartPanel = new ChartPanel(scatterChart, false);
            chartPanel.setPreferredSize(new Dimension(plotWidth, plotHeight));
            innerPanel.add(chartPanel);

            if (groupHasChar) {
                groupLegend = "Group Names for " + independentHeaderArray[i] + ": " + groupLegend;
                /*
                JLabel legendLabel2 = new JLabel(groupLegend);
                legendLabel2.setBackground(Color.WHITE);
                JPanel labelPanel2 = new JPanel();
                labelPanel2.add(legendLabel2, BorderLayout.NORTH);
                innerPanel.add(labelPanel2);
                */

            }
            groupLegend = "";
            treeSet = new TreeSet<String>();

        }
    } catch (Exception e) {
        ////System.out.println("doGraph Residuals Exception = " + e);

    }

    // 4. Normal QQ plot: need residuals and standardized normal scores
    //JFreeChart qqChart = chartFactory.getLineChart("Residual Normal QQ Plot", "Theoretical Quantiles", "Standardized Residuals", sortedStandardizedNormalQuantiles, sortedStandardizedResiduals);
    JFreeChart qqChart = chartFactory.getQQChart("Residual Normal QQ Plot", "Theoretical Quantiles",
            "Standardized Residuals", "Standardized Residual Value  ", sortedStandardizedNormalQuantiles,
            sortedStandardizedResiduals, "At Standardized Residual = 0", 0, 1, "noshape");
    //JFreeChart qqChart = chartFactory.getLineChart("Residual Normal QQ Plot", "Theoretical Quantiles", "Standardized Residuals", sortedStandardizedNormalQuantiles, sortedStandardizedResiduals);

    //JFreeChart qqChart = chartFactory.getLineChart("Residual Normal QQ Plot", "Theoretical Quantiles", "Standardized Residuals", sortedStandardizedNormalQuantiles, sortedStandardizedResiduals, "noline");
    chartPanel = new ChartPanel(qqChart, false);
    chartPanel.setPreferredSize(new Dimension(plotWidth, plotHeight));
    innerPanel.add(chartPanel);

    graphPanel.validate();

}