Example usage for java.util TreeMap putAll

Introduction

In this page you can find the example usage for java.util TreeMap putAll.

Prototype

public void putAll(Map<? extends K, ? extends V> map) 

Source Link

Document

Copies all of the mappings from the specified map to this map.

Usage

From source file:org.apache.accumulo.shell.commands.ConfigCommand.java

@Override
public int execute(final String fullCommand, final CommandLine cl, final Shell shellState)
        throws AccumuloException, AccumuloSecurityException, TableNotFoundException, IOException,
        ClassNotFoundException, NamespaceNotFoundException {
    reader = shellState.getReader();/*from  w  w w  .  j a v  a2s  .c  om*/

    final String tableName = cl.getOptionValue(tableOpt.getOpt());
    if (tableName != null && !shellState.getConnector().tableOperations().exists(tableName)) {
        throw new TableNotFoundException(null, tableName, null);
    }
    final String namespace = cl.getOptionValue(namespaceOpt.getOpt());
    if (namespace != null && !shellState.getConnector().namespaceOperations().exists(namespace)) {
        throw new NamespaceNotFoundException(null, namespace, null);
    }
    if (cl.hasOption(deleteOpt.getOpt())) {
        // delete property from table
        String property = cl.getOptionValue(deleteOpt.getOpt());
        if (property.contains("=")) {
            throw new BadArgumentException("Invalid '=' operator in delete operation.", fullCommand,
                    fullCommand.indexOf('='));
        }
        if (tableName != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().tableOperations().removeProperty(tableName, property);
            Shell.log.debug("Successfully deleted table configuration option.");
        } else if (namespace != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().namespaceOperations().removeProperty(namespace, property);
            Shell.log.debug("Successfully deleted namespace configuration option.");
        } else {
            if (!Property.isValidZooPropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().instanceOperations().removeProperty(property);
            Shell.log.debug("Successfully deleted system configuration option");
        }
    } else if (cl.hasOption(setOpt.getOpt())) {
        // set property on table
        String property = cl.getOptionValue(setOpt.getOpt()), value = null;
        if (!property.contains("=")) {
            throw new BadArgumentException("Missing '=' operator in set operation.", fullCommand,
                    fullCommand.indexOf(property));
        }
        final String pair[] = property.split("=", 2);
        property = pair[0];
        value = pair[1];

        if (tableName != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                throw new BadArgumentException("Invalid per-table property.", fullCommand,
                        fullCommand.indexOf(property));
            }
            if (property.equals(Property.TABLE_DEFAULT_SCANTIME_VISIBILITY.getKey())) {
                new ColumnVisibility(value); // validate that it is a valid expression
            }
            shellState.getConnector().tableOperations().setProperty(tableName, property, value);
            Shell.log.debug("Successfully set table configuration option.");
        } else if (namespace != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                throw new BadArgumentException("Invalid per-table property.", fullCommand,
                        fullCommand.indexOf(property));
            }
            if (property.equals(Property.TABLE_DEFAULT_SCANTIME_VISIBILITY.getKey())) {
                new ColumnVisibility(value); // validate that it is a valid expression
            }
            shellState.getConnector().namespaceOperations().setProperty(namespace, property, value);
            Shell.log.debug("Successfully set table configuration option.");
        } else {
            if (!Property.isValidZooPropertyKey(property)) {
                throw new BadArgumentException("Property cannot be modified in zookeeper", fullCommand,
                        fullCommand.indexOf(property));
            }
            shellState.getConnector().instanceOperations().setProperty(property, value);
            Shell.log.debug("Successfully set system configuration option");
        }
    } else {
        // display properties
        final TreeMap<String, String> systemConfig = new TreeMap<String, String>();
        systemConfig.putAll(shellState.getConnector().instanceOperations().getSystemConfiguration());

        final String outputFile = cl.getOptionValue(outputFileOpt.getOpt());
        final PrintFile printFile = outputFile == null ? null : new PrintFile(outputFile);

        final TreeMap<String, String> siteConfig = new TreeMap<String, String>();
        siteConfig.putAll(shellState.getConnector().instanceOperations().getSiteConfiguration());

        final TreeMap<String, String> defaults = new TreeMap<String, String>();
        for (Entry<String, String> defaultEntry : AccumuloConfiguration.getDefaultConfiguration()) {
            defaults.put(defaultEntry.getKey(), defaultEntry.getValue());
        }

        final TreeMap<String, String> namespaceConfig = new TreeMap<String, String>();
        if (tableName != null) {
            String n = Namespaces.getNamespaceName(shellState.getInstance(), Tables.getNamespaceId(
                    shellState.getInstance(), Tables.getTableId(shellState.getInstance(), tableName)));
            for (Entry<String, String> e : shellState.getConnector().namespaceOperations().getProperties(n)) {
                namespaceConfig.put(e.getKey(), e.getValue());
            }
        }

        Iterable<Entry<String, String>> acuconf = shellState.getConnector().instanceOperations()
                .getSystemConfiguration().entrySet();
        if (tableName != null) {
            acuconf = shellState.getConnector().tableOperations().getProperties(tableName);
        } else if (namespace != null) {
            acuconf = shellState.getConnector().namespaceOperations().getProperties(namespace);
        }
        final TreeMap<String, String> sortedConf = new TreeMap<String, String>();
        for (Entry<String, String> propEntry : acuconf) {
            sortedConf.put(propEntry.getKey(), propEntry.getValue());
        }

        for (Entry<String, String> propEntry : acuconf) {
            final String key = propEntry.getKey();
            // only show properties with similar names to that
            // specified, or all of them if none specified
            if (cl.hasOption(filterOpt.getOpt()) && !key.contains(cl.getOptionValue(filterOpt.getOpt()))) {
                continue;
            }
            if ((tableName != null || namespace != null) && !Property.isValidTablePropertyKey(key)) {
                continue;
            }
            COL2 = Math.max(COL2, propEntry.getKey().length() + 3);
        }

        final ArrayList<String> output = new ArrayList<String>();
        printConfHeader(output);

        for (Entry<String, String> propEntry : sortedConf.entrySet()) {
            final String key = propEntry.getKey();

            // only show properties with similar names to that
            // specified, or all of them if none specified
            if (cl.hasOption(filterOpt.getOpt()) && !key.contains(cl.getOptionValue(filterOpt.getOpt()))) {
                continue;
            }
            if ((tableName != null || namespace != null) && !Property.isValidTablePropertyKey(key)) {
                continue;
            }
            String siteVal = siteConfig.get(key);
            String sysVal = systemConfig.get(key);
            String curVal = propEntry.getValue();
            String dfault = defaults.get(key);
            String nspVal = namespaceConfig.get(key);
            boolean printed = false;

            if (dfault != null && key.toLowerCase().contains("password")) {
                siteVal = sysVal = dfault = curVal = curVal.replaceAll(".", "*");
            }
            if (sysVal != null) {
                if (defaults.containsKey(key) && !Property.getPropertyByKey(key).isExperimental()) {
                    printConfLine(output, "default", key, dfault);
                    printed = true;
                }
                if (!defaults.containsKey(key) || !defaults.get(key).equals(siteVal)) {
                    printConfLine(output, "site", printed ? "   @override" : key,
                            siteVal == null ? "" : siteVal);
                    printed = true;
                }
                if (!siteConfig.containsKey(key) || !siteVal.equals(sysVal)) {
                    printConfLine(output, "system", printed ? "   @override" : key, sysVal);
                    printed = true;
                }

            }
            if (nspVal != null) {
                if (!systemConfig.containsKey(key) || !sysVal.equals(nspVal)) {
                    printConfLine(output, "namespace", printed ? "   @override" : key, nspVal);
                    printed = true;
                }
            }

            // show per-table value only if it is different (overridden)
            if (tableName != null && !curVal.equals(nspVal)) {
                printConfLine(output, "table", printed ? "   @override" : key, curVal);
            } else if (namespace != null && !curVal.equals(sysVal)) {
                printConfLine(output, "namespace", printed ? "   @override" : key, curVal);
            }
        }
        printConfFooter(output);
        shellState.printLines(output.iterator(), !cl.hasOption(disablePaginationOpt.getOpt()), printFile);
        if (printFile != null) {
            printFile.close();
        }
    }
    return 0;
}

---

From source file:org.apache.accumulo.core.util.shell.commands.ConfigCommand.java

@Override
public int execute(final String fullCommand, final CommandLine cl, final Shell shellState)
        throws AccumuloException, AccumuloSecurityException, TableNotFoundException, IOException,
        ClassNotFoundException, NamespaceNotFoundException {
    reader = shellState.getReader();/*from   w w w  . j  a va2s. c om*/

    final String tableName = cl.getOptionValue(tableOpt.getOpt());
    if (tableName != null && !shellState.getConnector().tableOperations().exists(tableName)) {
        throw new TableNotFoundException(null, tableName, null);
    }
    final String namespace = cl.getOptionValue(namespaceOpt.getOpt());
    if (namespace != null && !shellState.getConnector().namespaceOperations().exists(namespace)) {
        throw new NamespaceNotFoundException(null, namespace, null);
    }
    if (cl.hasOption(deleteOpt.getOpt())) {
        // delete property from table
        String property = cl.getOptionValue(deleteOpt.getOpt());
        if (property.contains("=")) {
            throw new BadArgumentException("Invalid '=' operator in delete operation.", fullCommand,
                    fullCommand.indexOf('='));
        }
        if (tableName != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().tableOperations().removeProperty(tableName, property);
            Shell.log.debug("Successfully deleted table configuration option.");
        } else if (namespace != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().namespaceOperations().removeProperty(namespace, property);
            Shell.log.debug("Successfully deleted namespace configuration option.");
        } else {
            if (!Property.isValidZooPropertyKey(property)) {
                Shell.log.warn("Invalid per-table property : " + property
                        + ", still removing from zookeeper if it's there.");
            }
            shellState.getConnector().instanceOperations().removeProperty(property);
            Shell.log.debug("Successfully deleted system configuration option");
        }
    } else if (cl.hasOption(setOpt.getOpt())) {
        // set property on table
        String property = cl.getOptionValue(setOpt.getOpt()), value = null;
        if (!property.contains("=")) {
            throw new BadArgumentException("Missing '=' operator in set operation.", fullCommand,
                    fullCommand.indexOf(property));
        }
        final String pair[] = property.split("=", 2);
        property = pair[0];
        value = pair[1];

        if (tableName != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                throw new BadArgumentException("Invalid per-table property.", fullCommand,
                        fullCommand.indexOf(property));
            }
            if (property.equals(Property.TABLE_DEFAULT_SCANTIME_VISIBILITY.getKey())) {
                new ColumnVisibility(value); // validate that it is a valid expression
            }
            shellState.getConnector().tableOperations().setProperty(tableName, property, value);
            Shell.log.debug("Successfully set table configuration option.");
        } else if (namespace != null) {
            if (!Property.isValidTablePropertyKey(property)) {
                throw new BadArgumentException("Invalid per-table property.", fullCommand,
                        fullCommand.indexOf(property));
            }
            if (property.equals(Property.TABLE_DEFAULT_SCANTIME_VISIBILITY.getKey())) {
                new ColumnVisibility(value); // validate that it is a valid expression
            }
            shellState.getConnector().namespaceOperations().setProperty(namespace, property, value);
            Shell.log.debug("Successfully set table configuration option.");
        } else {
            if (!Property.isValidZooPropertyKey(property)) {
                throw new BadArgumentException("Property cannot be modified in zookeeper", fullCommand,
                        fullCommand.indexOf(property));
            }
            shellState.getConnector().instanceOperations().setProperty(property, value);
            Shell.log.debug("Successfully set system configuration option");
        }
    } else {
        // display properties
        final TreeMap<String, String> systemConfig = new TreeMap<String, String>();
        systemConfig.putAll(shellState.getConnector().instanceOperations().getSystemConfiguration());

        final String outputFile = cl.getOptionValue(outputFileOpt.getOpt());
        final PrintFile printFile = outputFile == null ? null : new PrintFile(outputFile);

        final TreeMap<String, String> siteConfig = new TreeMap<String, String>();
        siteConfig.putAll(shellState.getConnector().instanceOperations().getSiteConfiguration());

        final TreeMap<String, String> defaults = new TreeMap<String, String>();
        for (Entry<String, String> defaultEntry : AccumuloConfiguration.getDefaultConfiguration()) {
            defaults.put(defaultEntry.getKey(), defaultEntry.getValue());
        }

        final TreeMap<String, String> namespaceConfig = new TreeMap<String, String>();
        if (tableName != null) {
            String n = Namespaces.getNamespaceName(shellState.getInstance(), Tables.getNamespaceId(
                    shellState.getInstance(), Tables.getTableId(shellState.getInstance(), tableName)));
            for (Entry<String, String> e : shellState.getConnector().namespaceOperations().getProperties(n)) {
                namespaceConfig.put(e.getKey(), e.getValue());
            }
        }

        Iterable<Entry<String, String>> acuconf = shellState.getConnector().instanceOperations()
                .getSystemConfiguration().entrySet();
        if (tableName != null) {
            acuconf = shellState.getConnector().tableOperations().getProperties(tableName);
        } else if (namespace != null) {
            acuconf = shellState.getConnector().namespaceOperations().getProperties(namespace);
        }
        final TreeMap<String, String> sortedConf = new TreeMap<String, String>();
        for (Entry<String, String> propEntry : acuconf) {
            sortedConf.put(propEntry.getKey(), propEntry.getValue());
        }

        for (Entry<String, String> propEntry : acuconf) {
            final String key = propEntry.getKey();
            // only show properties with similar names to that
            // specified, or all of them if none specified
            if (cl.hasOption(filterOpt.getOpt()) && !key.contains(cl.getOptionValue(filterOpt.getOpt()))) {
                continue;
            }
            if ((tableName != null || namespace != null) && !Property.isValidTablePropertyKey(key)) {
                continue;
            }
            COL2 = Math.max(COL2, propEntry.getKey().length() + 3);
        }

        final ArrayList<String> output = new ArrayList<String>();
        printConfHeader(output);

        for (Entry<String, String> propEntry : sortedConf.entrySet()) {
            final String key = propEntry.getKey();

            // only show properties with similar names to that
            // specified, or all of them if none specified
            if (cl.hasOption(filterOpt.getOpt()) && !key.contains(cl.getOptionValue(filterOpt.getOpt()))) {
                continue;
            }
            if ((tableName != null || namespace != null) && !Property.isValidTablePropertyKey(key)) {
                continue;
            }
            String siteVal = siteConfig.get(key);
            String sysVal = systemConfig.get(key);
            String curVal = propEntry.getValue();
            String dfault = defaults.get(key);
            String nspVal = namespaceConfig.get(key);
            boolean printed = false;

            if (dfault != null && key.toLowerCase().contains("password")) {
                siteVal = sysVal = dfault = curVal = curVal.replaceAll(".", "*");
            }
            if (sysVal != null) {
                if (defaults.containsKey(key)) {
                    printConfLine(output, "default", key, dfault);
                    printed = true;
                }
                if (!defaults.containsKey(key) || !defaults.get(key).equals(siteVal)) {
                    printConfLine(output, "site", printed ? "   @override" : key,
                            siteVal == null ? "" : siteVal);
                    printed = true;
                }
                if (!siteConfig.containsKey(key) || !siteVal.equals(sysVal)) {
                    printConfLine(output, "system", printed ? "   @override" : key,
                            sysVal == null ? "" : sysVal);
                    printed = true;
                }

            }
            if (nspVal != null) {
                if (!systemConfig.containsKey(key) || !sysVal.equals(nspVal)) {
                    printConfLine(output, "namespace", printed ? "   @override" : key,
                            nspVal == null ? "" : nspVal);
                    printed = true;
                }
            }

            // show per-table value only if it is different (overridden)
            if (tableName != null && !curVal.equals(nspVal)) {
                printConfLine(output, "table", printed ? "   @override" : key, curVal);
            } else if (namespace != null && !curVal.equals(sysVal)) {
                printConfLine(output, "namespace", printed ? "   @override" : key, curVal);
            }
        }
        printConfFooter(output);
        shellState.printLines(output.iterator(), !cl.hasOption(disablePaginationOpt.getOpt()), printFile);
        if (printFile != null) {
            printFile.close();
        }
    }
    return 0;
}

---

From source file:gda.scan.ConcurrentScanChild.java

TreeMap<Integer, Scannable[]> generateDevicesToMoveByLevel(TreeMap<Integer, Scannable[]> scannableLevels,
        Vector<Detector> detectors) {

    TreeMap<Integer, Scannable[]> devicesToMoveByLevel = new TreeMap<Integer, Scannable[]>();
    devicesToMoveByLevel.putAll(scannableLevels);

    for (Scannable detector : detectors) {

        Integer level = detector.getLevel();

        if (devicesToMoveByLevel.containsKey(level)) {
            Scannable[] levelArray = devicesToMoveByLevel.get(level);
            levelArray = (Scannable[]) ArrayUtils.add(levelArray, detector);
            devicesToMoveByLevel.put(level, levelArray);
        } else {/* w w  w. ja va  2  s. c o m*/
            Scannable[] levelArray = new Scannable[] { detector };
            devicesToMoveByLevel.put(level, levelArray);
        }
    }
    return devicesToMoveByLevel;
}

---

From source file:org.overlord.sramp.shell.ShellCommandFactory.java

/**
 * Gets the available commands, ordered by command {@link QName}.
 *///from w w w. jav a  2 s .  co m
private Map<QName, Class<? extends ShellCommand>> getCommands() {
    TreeMap<QName, Class<? extends ShellCommand>> treeMap = new TreeMap<QName, Class<? extends ShellCommand>>(
            new Comparator<QName>() {
                @Override
                public int compare(QName name1, QName name2) {
                    return name1.toString().compareTo(name2.toString());
                }
            });
    treeMap.putAll(this.registry);
    return treeMap;
}

---

From source file:com.opengamma.analytics.financial.provider.sensitivity.inflation.MultipleCurrencyInflationSensitivity.java

/**
 * Create a new multiple currency sensitivity by adding the sensitivity associated to a given currency.
 * If the currency is not yet present in the existing sensitivity a new map is created with the extra entry.
 * If the currency is already present, the associated sensitivities are added (in the sense of {@link InterestRateCurveSensitivity}) and a new map is created with all the other
 * existing entries and the entry with the currency and the sum sensitivity.
 * @param ccy The currency. Not null./*from w w  w  .  j  av a 2  s  .c o m*/
 * @param sensitivity The sensitivity associated to the currency. Not null.
 * @return The new multiple currency sensitivity.
 */
public MultipleCurrencyInflationSensitivity plus(final Currency ccy, final InflationSensitivity sensitivity) {
    ArgumentChecker.notNull(ccy, "Currency");
    ArgumentChecker.notNull(sensitivity, "Sensitivity");
    final TreeMap<Currency, InflationSensitivity> map = new TreeMap<>();
    if (_sensitivity.containsKey(ccy)) {
        map.put(ccy, sensitivity.plus(_sensitivity.get(ccy)));
        for (final Currency loopccy : _sensitivity.keySet()) {
            if (loopccy != ccy) {
                map.put(loopccy, _sensitivity.get(loopccy));
            }
        }
    } else {
        map.putAll(_sensitivity);
        map.put(ccy, sensitivity);
    }
    return new MultipleCurrencyInflationSensitivity(map);
}

---

From source file:com.opengamma.analytics.financial.forex.method.MultipleCurrencyInterestRateCurveSensitivity.java

/**
 * Create a new multiple currency sensitivity by adding the sensitivity associated to a given currency.
 * If the currency is not yet present in the existing sensitivity a new map is created with the extra entry.
 * If the currency is already present, the associated sensitivities are added (in the sense of {@link InterestRateCurveSensitivity}) and a new map is created with all the other
 * existing entries and the entry with the currency and the sum sensitivity.
 * @param ccy The currency. Not null.//from w  w w  . j  a va  2  s .c om
 * @param sensitivity The sensitivity associated to the currency. Not null.
 * @return The new multiple currency sensitivity.
 */
public MultipleCurrencyInterestRateCurveSensitivity plus(final Currency ccy,
        final InterestRateCurveSensitivity sensitivity) {
    ArgumentChecker.notNull(ccy, "Currency");
    ArgumentChecker.notNull(sensitivity, "Sensitivity");
    final TreeMap<Currency, InterestRateCurveSensitivity> map = new TreeMap<>();
    if (_sensitivity.containsKey(ccy)) {
        map.put(ccy, sensitivity.plus(_sensitivity.get(ccy)));
        for (final Currency loopccy : _sensitivity.keySet()) {
            if (loopccy != ccy) {
                map.put(loopccy, _sensitivity.get(loopccy));
            }
        }
    } else {
        map.putAll(_sensitivity);
        map.put(ccy, sensitivity);
    }
    return new MultipleCurrencyInterestRateCurveSensitivity(map);
}

---

From source file:model.plate.ANATestResult.java

public void diagnose2(double control) {
    //titer,positivity,r2,pattern
    final Comparator<DiagnosisConstant.ANA_Titer> titerComparator = new Comparator<DiagnosisConstant.ANA_Titer>() {
        @Override/*w  ww .java 2s. co  m*/
        public int compare(DiagnosisConstant.ANA_Titer t, DiagnosisConstant.ANA_Titer t1) {
            if (t.getId() < 0) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t1.getId() < 0) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t.getId() > 6) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t1.getId() > 6) {
                throw new RuntimeException("Titer: " + t.name());
            }
            return t.getId() < t1.getId() ? -1 : t.getId() == t1.getId() ? 0 : 1;
        }
    };
    TreeMap<DiagnosisConstant.ANA_Titer, Double> decreasingSignals = new TreeMap<>(titerComparator);
    decreasingSignals.putAll(signals);
    SimpleRegression regression = new SimpleRegression();
    Iterator<DiagnosisConstant.ANA_Titer> it = decreasingSignals.keySet().iterator();
    DiagnosisConstant.ANA_Titer t;
    Double signal;
    while (it.hasNext()) {
        t = it.next();
        signal = decreasingSignals.get(t);
        if (signal == null)
            continue;
        //            posCtrl=signal>posCtrl?signal:posCtrl; ??1:40, 
        regression.addData((double) t.getId(), signal);
        if (signal > control) {// * PlateConstants.PositiveCutOffRatio
            titer = t;
        }
    }

    r2 = regression.getRSquare();
    if (r2 < PlateConstants.R2_TH) {
        warningMessage.add(WarningMessage.SampleLinearity.getId());
    }
    if (titer == null)
        titer = DiagnosisConstant.ANA_Titer.ANA_LESS_1_40;
    if (DiagnosisConstant.ANA_Titer.ANA_LESS_1_40.equals(titer) || titer.getId() < 2) {//1:40

        System.out.println();
        for (DiagnosisConstant.ANA_Titer t1 : decreasingSignals.keySet()) {
            System.out.println(
                    this.julien_barcode + " Sample vs Control (th=" + PlateConstants.PositiveCutOffRatio + ")");
            System.out.println(t1 + ": signal=" + decreasingSignals.get(t1) + "\tv.s.\tcontrol=" + control
                    + " (" + decreasingSignals.get(t1) / control + ")");
        }
        System.out.println();
        positivity = DiagnosisConstant.ANA_Result.NEGATIVE;
        warningMessage.add(WarningMessage.WeakPositive.getId());

    } else {
        positivity = DiagnosisConstant.ANA_Result.POSITIVE;
    }
}

---

From source file:model.plate.ANATestResult.java

public boolean initPosCtrl2(double negControl) {
    final Comparator<DiagnosisConstant.ANA_Titer> titerComparator = new Comparator<DiagnosisConstant.ANA_Titer>() {
        @Override//w ww .j a v  a2 s. co m
        public int compare(DiagnosisConstant.ANA_Titer t, DiagnosisConstant.ANA_Titer t1) {
            if (t.getId() < 0) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t1.getId() < 0) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t.getId() > 6) {
                throw new RuntimeException("Titer: " + t.name());
            }
            if (t1.getId() > 6) {
                throw new RuntimeException("Titer: " + t.name());
            }
            return t.getId() < t1.getId() ? -1 : t.getId() == t1.getId() ? 0 : 1;
        }
    };
    TreeMap<DiagnosisConstant.ANA_Titer, Double> decreasingSignals = new TreeMap<>(titerComparator);
    decreasingSignals.putAll(signals);
    SimpleRegression regression = new SimpleRegression();
    Iterator<DiagnosisConstant.ANA_Titer> it = decreasingSignals.keySet().iterator();
    DiagnosisConstant.ANA_Titer t;
    double signal, posCtrl = getFirstPlateSignal();

    while (it.hasNext()) {
        t = it.next();
        signal = decreasingSignals.get(t);
        //            posCtrl=signal>posCtrl?signal:posCtrl; ??1:40, 
        regression.addData((double) t.getId(), signal);
        if (signal > posCtrl * PlateConstants.PositiveCutOffRatio
                || signal > negControl * PlateConstants.NegativeCutOffRatio) {
            titer = t;

        }
    }
    if (titer.getId() >= DiagnosisConstant.ANA_Titer.ANA_1_320.getId()) {
        positivity = DiagnosisConstant.ANA_Result.POSITIVE;
        System.out.println("found titer for " + plateID + " : " + titer);
        System.out.println();
        System.out.println();
    }
    r2 = regression.getRSquare();
    if (r2 < PlateConstants.R2_TH) {
        warningMessage.add(WarningMessage.PositiveControlLinearity.getId());
    }
    if (titer == null || titer.getId() < DiagnosisConstant.ANA_Titer.ANA_1_320.getId()) {//1:40
        titer = DiagnosisConstant.ANA_Titer.ANA_LESS_1_40;
        System.out.println();
        for (DiagnosisConstant.ANA_Titer t1 : decreasingSignals.keySet()) {
            System.out.println(plateID + " Control Sample Compare");
            System.out.println(t1 + ": posCtrl=" + decreasingSignals.get(t1) + "\tv.s.\tnegCtrl=" + negControl
                    + " (" + decreasingSignals.get(t1) / negControl + ")");
        }
        System.out.println();
        positivity = DiagnosisConstant.ANA_Result.NEGATIVE;
        System.out.println("barcode " + this.julien_barcode);
        warningMessage.add(WarningMessage.PositiveNegativeControlComparison.getId());

    } else {
        positivity = DiagnosisConstant.ANA_Result.POSITIVE;
    }
    if (posCtrl < negControl * PlateConstants.CTRL_RATIO_TH) {
        this.warningMessage.add(WarningMessage.PosCtrlFailed.getId());
        return false;
    }
    return true;
}

---

From source file:com.opengamma.analytics.financial.provider.sensitivity.multicurve.MultipleCurrencyMulticurveSensitivity.java

/**
 * Create a new multiple currency sensitivity by adding the sensitivity associated to a given currency.
 * If the currency is not yet present in the existing sensitivity a new map is created with the extra entry.
 * If the currency is already present, the associated sensitivities are added (in the sense of {@link InterestRateCurveSensitivity}) and a new map is created with all the other
 * existing entries and the entry with the currency and the sum sensitivity.
 * @param ccy The currency. Not null./*w ww .ja va2 s.  c  om*/
 * @param sensitivity The sensitivity associated to the currency. Not null.
 * @return The new multiple currency sensitivity.
 */
public MultipleCurrencyMulticurveSensitivity plus(final Currency ccy, final MulticurveSensitivity sensitivity) {
    ArgumentChecker.notNull(ccy, "Currency");
    ArgumentChecker.notNull(sensitivity, "Sensitivity");
    final TreeMap<Currency, MulticurveSensitivity> map = new TreeMap<>();
    if (_sensitivity.containsKey(ccy)) {
        map.put(ccy, sensitivity.plus(_sensitivity.get(ccy)));
        for (final Currency loopccy : _sensitivity.keySet()) {
            if (loopccy != ccy) {
                map.put(loopccy, _sensitivity.get(loopccy));
            }
        }
    } else {
        map.putAll(_sensitivity);
        map.put(ccy, sensitivity);
    }
    return new MultipleCurrencyMulticurveSensitivity(map);
}

---

From source file:com.opengamma.analytics.financial.interestrate.market.description.MultipleCurrencyCurveSensitivityMarket.java

/**
 * Create a new multiple currency sensitivity by adding the sensitivity associated to a given currency. 
 * If the currency is not yet present in the existing sensitivity a new map is created with the extra entry.
 * If the currency is already present, the associated sensitivities are added (in the sense of {@link InterestRateCurveSensitivity}) and a new map is created with all the other
 * existing entries and the entry with the currency and the sum sensitivity.
 * @param ccy The currency. Not null.// ww  w.j  a v  a 2s  .  c  o m
 * @param sensitivity The sensitivity associated to the currency. Not null.
 * @return The new multiple currency sensitivity.
 */
public MultipleCurrencyCurveSensitivityMarket plus(final Currency ccy,
        final CurveSensitivityMarket sensitivity) {
    ArgumentChecker.notNull(ccy, "Currency");
    ArgumentChecker.notNull(sensitivity, "Sensitivity");
    final TreeMap<Currency, CurveSensitivityMarket> map = new TreeMap<Currency, CurveSensitivityMarket>();
    if (_sensitivity.containsKey(ccy)) {
        map.put(ccy, sensitivity.plus(_sensitivity.get(ccy)));
        for (final Currency loopccy : _sensitivity.keySet()) {
            if (loopccy != ccy) {
                map.put(loopccy, _sensitivity.get(loopccy));
            }
        }
    } else {
        map.putAll(_sensitivity);
        map.put(ccy, sensitivity);
    }
    return new MultipleCurrencyCurveSensitivityMarket(map);
}

---

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