Example usage for java.util Set toArray

List of usage examples for java.util Set toArray

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Introduction

In this page you can find the example usage for java.util Set toArray.

Prototype

<T> T[] toArray(T[] a);

Source Link

Document

Returns an array containing all of the elements in this set; the runtime type of the returned array is that of the specified array.

Usage

From source file:Main.java

public static void main(String[] args) {
    String elements[] = { "M", "N", "O", "P", "Q" };
    Set set = new HashSet(Arrays.asList(elements));

    String[] strObj = new String[set.size()];

    strObj = (String[]) set.toArray(strObj);

    for (int i = 0; i < strObj.length; i++) {
        System.out.println(strObj[i]);
    }//from  w w  w .j ava 2s  .co  m
    System.out.println(set);
}

From source file:MainClass.java

public static void main(String[] a) {
    String elements[] = { "A", "B", "C", "D", "E" };
    Set set = new HashSet(Arrays.asList(elements));

    String[] strObj = new String[set.size()];

    strObj = (String[]) set.toArray(strObj);

    for (int i = 0; i < strObj.length; i++) {
        System.out.println(strObj[i]);
    }//from w  w  w  . ja  va  2s. c  o m

    System.out.println(set);
}

From source file:Main.java

public static void main(final String[] args) throws Exception {
    Random random = new Random();
    Set<Integer> intSet = new HashSet<>();
    while (intSet.size() < 6) {
        intSet.add(random.nextInt(49) + 1);
    }//from   w  w w.j a v a  2  s .c o  m
    Integer[] ints = intSet.toArray(new Integer[intSet.size()]);
    System.out.println(Arrays.toString(ints));
}

From source file:Main.java

public static void main(String[] args) {
    // A string array with duplicate values
    String[] data = { "A", "C", "B", "D", "A", "B", "E", "D", "B", "C" };
    System.out.println("Original array         : " + Arrays.toString(data));

    List<String> list = Arrays.asList(data);
    Set<String> set = new HashSet<String>(list);

    System.out.print("Remove duplicate result: ");

    String[] result = new String[set.size()];
    set.toArray(result);
    for (String s : result) {
        System.out.print(s + ", ");
    }/*w  ww.j  a  va 2 s  .c  o m*/
}

From source file:Main.java

public static void main(String[] argv) {
    // Create the sorted set
    Set<String> set = new TreeSet<String>();

    set.add("b");
    set.add("c");
    set.add("a");

    Iterator it = set.iterator();
    while (it.hasNext()) {

        Object element = it.next();
        System.out.println(element);
    }//from   ww w  . j a v a2 s  .  c om

    // Create an array containing the elements in a set
    String[] array = (String[]) set.toArray(new String[set.size()]);
    Arrays.toString(array);
}

From source file:de.unisb.cs.st.javaslicer.slicing.Slicer.java

public static void main(String[] args) throws InterruptedException {
    Options options = createOptions();//w ww. j a  va  2  s. c o m
    CommandLineParser parser = new GnuParser();
    CommandLine cmdLine;

    try {
        cmdLine = parser.parse(options, args, true);
    } catch (ParseException e) {
        System.err.println("Error parsing the command line arguments: " + e.getMessage());
        return;
    }

    if (cmdLine.hasOption('h')) {
        printHelp(options, System.out);
        System.exit(0);
    }

    String[] additionalArgs = cmdLine.getArgs();
    if (additionalArgs.length != 2) {
        printHelp(options, System.err);
        System.exit(-1);
    }
    // ?? 1. ? 2.?
    File traceFile = new File(additionalArgs[0]);
    String slicingCriterionString = additionalArgs[1];

    Long threadId = null;
    if (cmdLine.hasOption('t')) { // the interesting thread id for slicing 
        try {
            threadId = Long.parseLong(cmdLine.getOptionValue('t'));
        } catch (NumberFormatException e) {
            System.err.println("Illegal thread id: " + cmdLine.getOptionValue('t'));
            System.exit(-1);
        }
    }

    TraceResult trace;
    try {
        trace = TraceResult.readFrom(traceFile);
    } catch (IOException e) {
        System.err.format("Could not read the trace file \"%s\": %s%n", traceFile, e);
        System.exit(-1);
        return;
    }

    List<SlicingCriterion> sc = null; // a list contains the instruction's info corresponds to the slicing criterion
    //slicingCriterionString get from additionalArgs[1]
    try {
        sc = StaticSlicingCriterion.parseAll(slicingCriterionString, trace.getReadClasses());
    } catch (IllegalArgumentException e) {
        System.err.println("Error parsing slicing criterion: " + e.getMessage());
        System.exit(-1);
        return;
    }

    List<ThreadId> threads = trace.getThreads(); // the threads that generate the traces
    if (threads.size() == 0) {
        System.err.println("The trace file contains no tracing information.");
        System.exit(-1);
    }

    // threadID is used to mark the interesting thread
    ThreadId tracing = null;
    for (ThreadId t : threads) {
        if (threadId == null) {
            if ("main".equals(t.getThreadName())
                    && (tracing == null || t.getJavaThreadId() < tracing.getJavaThreadId()))
                tracing = t;
        } else if (t.getJavaThreadId() == threadId.longValue()) {
            tracing = t;
        }
    }

    if (tracing == null) {
        System.err.println(threadId == null ? "Couldn't find the main thread."
                : "The thread you specified was not found.");
        System.exit(-1);
        return;
    }

    long startTime = System.nanoTime();
    Slicer slicer = new Slicer(trace);
    if (cmdLine.hasOption("progress")) // the parameter process indicates that we need to monitor the process of slicing
        slicer.addProgressMonitor(new ConsoleProgressMonitor());
    boolean multithreaded;
    if (cmdLine.hasOption("multithreaded")) {
        String multithreadedStr = cmdLine.getOptionValue("multithreaded");
        multithreaded = ("1".equals(multithreadedStr) || "true".equals(multithreadedStr));
    } else {
        multithreaded = Runtime.getRuntime().availableProcessors() > 1;
    }

    boolean warnUntracedMethods = cmdLine.hasOption("warn-untraced"); // give some warns when encounters untraced functions

    //sliceInstructionCollector implements the interface slice visitor, which travel the dependence graph
    SliceInstructionsCollector collector = new SliceInstructionsCollector(); // the collector is used to collect the instructions in the dependence graph according to the slice criterion. 
    slicer.addSliceVisitor(collector);
    // zhushi by yhb

    if (warnUntracedMethods)
        slicer.addUntracedCallVisitor(new PrintUniqueUntracedMethods()); // the user need the untraced function info, so add untraced call visitor

    slicer.process(tracing, sc, multithreaded); //----------------------the key process of slicing!!!
    Set<InstructionInstance> slice = collector.getDynamicSlice(); // return the slice result from the collector
    long endTime = System.nanoTime();

    Instruction[] sliceArray = slice.toArray(new Instruction[slice.size()]); // convert the set to array
    Arrays.sort(sliceArray); // in order to ensure the sequence of dynamic execution

    // show the slicing result
    System.out.println("The dynamic slice for criterion " + sc + ":");
    for (Instruction insn : sliceArray) {
        System.out.format((Locale) null, "%s.%s:%d %s%n", insn.getMethod().getReadClass().getName(),
                insn.getMethod().getName(), insn.getLineNumber(), insn.toString());
    }
    System.out.format((Locale) null, "%nSlice consists of %d bytecode instructions.%n", sliceArray.length);
    System.out.format((Locale) null, "Computation took %.2f seconds.%n", 1e-9 * (endTime - startTime));
}

From source file:Inmemantlr.java

public static void main(String[] args) {
    LOGGER.info("Inmemantlr tool");

    HelpFormatter hformatter = new HelpFormatter();

    Options options = new Options();

    // Binary arguments
    options.addOption("h", "print this message");

    Option grmr = Option.builder().longOpt("grmrfiles").hasArgs().desc("comma-separated list of ANTLR files")
            .required(true).argName("grmrfiles").type(String.class).valueSeparator(',').build();

    Option infiles = Option.builder().longOpt("infiles").hasArgs()
            .desc("comma-separated list of files to parse").required(true).argName("infiles").type(String.class)
            .valueSeparator(',').build();

    Option utilfiles = Option.builder().longOpt("utilfiles").hasArgs()
            .desc("comma-separated list of utility files to be added for " + "compilation").required(false)
            .argName("utilfiles").type(String.class).valueSeparator(',').build();

    Option odir = Option.builder().longOpt("outdir")
            .desc("output directory in which the dot files will be " + "created").required(false).hasArg(true)
            .argName("outdir").type(String.class).build();

    options.addOption(infiles);/*from   w w w .  j  av  a  2s .co m*/
    options.addOption(grmr);
    options.addOption(utilfiles);
    options.addOption(odir);

    CommandLineParser parser = new DefaultParser();

    CommandLine cmd = null;

    try {
        cmd = parser.parse(options, args);
        if (cmd.hasOption('h')) {
            hformatter.printHelp("java -jar inmemantlr.jar", options);
            System.exit(0);
        }
    } catch (ParseException e) {
        hformatter.printHelp("java -jar inmemantlr.jar", options);
        LOGGER.error(e.getMessage());
        System.exit(-1);
    }

    // input files
    Set<File> ins = getFilesForOption(cmd, "infiles");
    // grammar files
    Set<File> gs = getFilesForOption(cmd, "grmrfiles");
    // utility files
    Set<File> uf = getFilesForOption(cmd, "utilfiles");
    // output dir
    Set<File> od = getFilesForOption(cmd, "outdir");

    if (od.size() > 1) {
        LOGGER.error("output directories must be less than or equal to 1");
        System.exit(-1);
    }

    if (ins.size() <= 0) {
        LOGGER.error("no input files were specified");
        System.exit(-1);
    }

    if (gs.size() <= 0) {
        LOGGER.error("no grammar files were specified");
        System.exit(-1);
    }

    LOGGER.info("create generic parser");
    GenericParser gp = null;
    try {
        gp = new GenericParser(gs.toArray(new File[gs.size()]));
    } catch (FileNotFoundException e) {
        LOGGER.error(e.getMessage());
        System.exit(-1);
    }

    if (!uf.isEmpty()) {
        try {
            gp.addUtilityJavaFiles(uf.toArray(new String[uf.size()]));
        } catch (FileNotFoundException e) {
            LOGGER.error(e.getMessage());
            System.exit(-1);
        }
    }

    LOGGER.info("create and add parse tree listener");
    DefaultTreeListener dt = new DefaultTreeListener();
    gp.setListener(dt);

    LOGGER.info("compile generic parser");
    try {
        gp.compile();
    } catch (CompilationException e) {
        LOGGER.error("cannot compile generic parser: {}", e.getMessage());
        System.exit(-1);
    }

    String fpfx = "";
    for (File of : od) {
        if (!of.exists() || !of.isDirectory()) {
            LOGGER.error("output directory does not exist or is not a " + "directory");
            System.exit(-1);
        }
        fpfx = of.getAbsolutePath();
    }

    Ast ast;
    for (File f : ins) {
        try {
            gp.parse(f);
        } catch (IllegalWorkflowException | FileNotFoundException e) {
            LOGGER.error(e.getMessage());
            System.exit(-1);
        }
        ast = dt.getAst();

        if (!fpfx.isEmpty()) {
            String of = fpfx + "/" + FilenameUtils.removeExtension(f.getName()) + ".dot";

            LOGGER.info("write file {}", of);

            try {
                FileUtils.writeStringToFile(new File(of), ast.toDot(), "UTF-8");
            } catch (IOException e) {
                LOGGER.error(e.getMessage());
                System.exit(-1);
            }
        } else {
            LOGGER.info("Tree for {} \n {}", f.getName(), ast.toDot());
        }
    }

    System.exit(0);
}

From source file:org.ala.hbase.RepoDataLoader.java

/**
 * This takes a list of infosource ids...
 * <p/>//from  w w w . java 2 s.  c  o m
 * Usage: -stats or -reindex or -gList and list of infosourceId
 *
 * @param args
 */
public static void main(String[] args) throws Exception {
    //RepoDataLoader loader = new RepoDataLoader();
    ApplicationContext context = SpringUtils.getContext();
    RepoDataLoader loader = (RepoDataLoader) context.getBean(RepoDataLoader.class);
    long start = System.currentTimeMillis();
    loader.loadInfoSources();
    String filePath = repositoryDir;
    if (args.length > 0) {
        if (args[0].equalsIgnoreCase("-stats")) {
            loader.statsOnly = true;
            args = (String[]) ArrayUtils.subarray(args, 1, args.length);
        }
        if (args[0].equalsIgnoreCase("-reindex")) {
            loader.reindex = true;
            loader.indexer = context.getBean(PartialIndex.class);
            args = (String[]) ArrayUtils.subarray(args, 1, args.length);
            logger.info("**** -reindex: " + loader.reindex);
            logger.debug("reindex url: " + loader.reindexUrl);
        }
        if (args[0].equalsIgnoreCase("-gList")) {
            loader.gList = true;
            args = (String[]) ArrayUtils.subarray(args, 1, args.length);
            logger.info("**** -gList: " + loader.gList);
        }
        if (args[0].equalsIgnoreCase("-biocache")) {
            Hashtable<String, String> hashTable = new Hashtable<String, String>();
            hashTable.put("accept", "application/json");
            ObjectMapper mapper = new ObjectMapper();
            mapper.getDeserializationConfig().set(DeserializationConfig.Feature.FAIL_ON_UNKNOWN_PROPERTIES,
                    false);
            RestfulClient restfulClient = new RestfulClient(0);
            String fq = "&fq=";
            if (args.length > 1) {
                java.util.Date date = new java.util.Date();
                if (args[1].equals("-lastWeek")) {
                    date = DateUtils.addWeeks(date, -1);
                } else if (args[1].equals("-lastMonth")) {
                    date = DateUtils.addMonths(date, -1);
                } else if (args[1].equals("-lastYear")) {
                    date = DateUtils.addYears(date, -1);
                } else
                    date = null;
                if (date != null) {
                    SimpleDateFormat sfd = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss'Z'");

                    fq += "last_load_date:%5B" + sfd.format(date) + "%20TO%20*%5D";
                }
            }

            Object[] resp = restfulClient
                    .restGet("http://biocache.ala.org.au/ws/occurrences/search?q=multimedia:Image" + fq
                            + "&facets=data_resource_uid&pageSize=0", hashTable);
            logger.info("The URL: " + "http://biocache.ala.org.au/ws/occurrences/search?q=multimedia:Image" + fq
                    + "&facets=data_resource_uid&pageSize=0");
            if ((Integer) resp[0] == HttpStatus.SC_OK) {
                String content = resp[1].toString();
                logger.debug(resp[1]);
                if (content != null && content.length() > "[]".length()) {
                    Map map = mapper.readValue(content, Map.class);
                    try {
                        List<java.util.LinkedHashMap<String, String>> list = ((List<java.util.LinkedHashMap<String, String>>) ((java.util.LinkedHashMap) ((java.util.ArrayList) map
                                .get("facetResults")).get(0)).get("fieldResult"));
                        Set<String> arg = new LinkedHashSet<String>();
                        for (int i = 0; i < list.size(); i++) {
                            java.util.LinkedHashMap<String, String> value = list.get(i);
                            String dataResource = getDataResource(value.get("fq"));
                            Object provider = (loader.getUidInfoSourceMap().get(dataResource));
                            if (provider != null) {
                                arg.add(provider.toString());
                            }
                        }
                        logger.info("Set of biocache infosource ids to load: " + arg);
                        args = new String[] {};
                        args = arg.toArray(args);
                        //handle the situation where biocache-service reports no data resources
                        if (args.length < 1) {
                            logger.error("No biocache data resources found. Unable to load.");
                            System.exit(0);
                        }
                    } catch (Exception e) {
                        logger.error("ERROR: exit process....." + e);
                        e.printStackTrace();
                        System.exit(0);
                    }
                }
            } else {
                logger.warn("Unable to process url: ");
            }
        }
    }
    int filesRead = loader.load(filePath, args); //FIX ME - move to config
    long finish = System.currentTimeMillis();
    logger.info(filesRead + " files scanned/loaded in: " + ((finish - start) / 60000) + " minutes "
            + ((finish - start) / 1000) + " seconds.");
    System.exit(1);
}

From source file:com.lightboxtechnologies.spectrum.SequenceFileExport.java

public static void main(String[] args) throws Exception {
    final Configuration conf = new Configuration();

    final String[] otherArgs = new GenericOptionsParser(conf, args).getRemainingArgs();

    String imageID;/*from w ww  . jav  a  2 s . c o  m*/
    String outpath;
    String friendlyname;
    final Set<String> exts = new HashSet<String>();

    if ("-f".equals(otherArgs[0])) {
        if (otherArgs.length != 4) {
            die();
        }

        // load extensions from file
        final Path extpath = new Path(otherArgs[1]);

        InputStream in = null;
        try {
            in = extpath.getFileSystem(conf).open(extpath);

            Reader r = null;
            try {
                r = new InputStreamReader(in);

                BufferedReader br = null;
                try {
                    br = new BufferedReader(r);

                    String line;
                    while ((line = br.readLine()) != null) {
                        exts.add(line.trim().toLowerCase());
                    }

                    br.close();
                } finally {
                    IOUtils.closeQuietly(br);
                }

                r.close();
            } finally {
                IOUtils.closeQuietly(r);
            }

            in.close();
        } finally {
            IOUtils.closeQuietly(in);
        }

        imageID = otherArgs[2];
        friendlyname = otherArgs[3];
        outpath = otherArgs[4];
    } else {
        if (otherArgs.length < 3) {
            die();
        }

        // read extensions from trailing args
        imageID = otherArgs[0];
        friendlyname = otherArgs[1];
        outpath = otherArgs[2];

        // lowercase all file extensions
        for (int i = 2; i < otherArgs.length; ++i) {
            exts.add(otherArgs[i].toLowerCase());
        }
    }

    conf.setStrings("extensions", exts.toArray(new String[exts.size()]));

    final Job job = SKJobFactory.createJobFromConf(imageID, friendlyname, "SequenceFileExport", conf);
    job.setJarByClass(SequenceFileExport.class);
    job.setMapperClass(SequenceFileExportMapper.class);
    job.setNumReduceTasks(0);

    job.setOutputKeyClass(BytesWritable.class);
    job.setOutputValueClass(MapWritable.class);

    job.setInputFormatClass(FsEntryHBaseInputFormat.class);
    FsEntryHBaseInputFormat.setupJob(job, imageID);

    job.setOutputFormatClass(SequenceFileOutputFormat.class);
    SequenceFileOutputFormat.setOutputCompressionType(job, SequenceFile.CompressionType.BLOCK);

    FileOutputFormat.setOutputPath(job, new Path(outpath));
    System.exit(job.waitForCompletion(true) ? 0 : 1);
}

From source file:com.act.lcms.db.io.PrintConstructInfo.java

public static void main(String[] args) throws Exception {
    Options opts = new Options();
    for (Option.Builder b : OPTION_BUILDERS) {
        opts.addOption(b.build());/*from  ww  w.j  av a 2 s.  com*/
    }

    CommandLine cl = null;
    try {
        CommandLineParser parser = new DefaultParser();
        cl = parser.parse(opts, args);
    } catch (ParseException e) {
        System.err.format("Argument parsing failed: %s\n", e.getMessage());
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        System.exit(1);
    }

    if (cl.hasOption("help")) {
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        return;
    }

    File lcmsDir = new File(cl.getOptionValue(OPTION_DIRECTORY));
    if (!lcmsDir.isDirectory()) {
        System.err.format("File at %s is not a directory\n", lcmsDir.getAbsolutePath());
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        System.exit(1);
    }

    try (DB db = DB.openDBFromCLI(cl)) {
        System.out.print("Loading/updating LCMS scan files into DB\n");
        ScanFile.insertOrUpdateScanFilesInDirectory(db, lcmsDir);

        String construct = cl.getOptionValue(OPTION_CONSTRUCT);
        List<LCMSWell> lcmsWells = LCMSWell.getInstance().getByConstructID(db, construct);
        Collections.sort(lcmsWells, new Comparator<LCMSWell>() {
            @Override
            public int compare(LCMSWell o1, LCMSWell o2) {
                return o1.getId().compareTo(o2.getId());
            }
        });

        Set<String> uniqueMSIDs = new HashSet<>();
        Map<Integer, Plate> platesById = new HashMap<>();

        System.out.format("\n\n-- Construct %s --\n\n", construct);

        List<ChemicalAssociatedWithPathway> pathwayChems = ChemicalAssociatedWithPathway.getInstance()
                .getChemicalsAssociatedWithPathwayByConstructId(db, construct);
        System.out.print("Chemicals associated with pathway:\n");
        System.out.format("  %-8s%-15s%-45s\n", "index", "kind", "chemical");
        for (ChemicalAssociatedWithPathway chem : pathwayChems) {
            System.out.format("  %-8d%-15s%-45s\n", chem.getIndex(), chem.getKind(), chem.getChemical());
        }

        System.out.print("\nLCMS wells:\n");
        System.out.format("  %-15s%-6s%-15s%-15s%-15s\n", "barcode", "well", "msid", "fed", "lcms_count");
        for (LCMSWell well : lcmsWells) {
            uniqueMSIDs.add(well.getMsid());

            Plate p = platesById.get(well.getPlateId());
            if (p == null) {
                // TODO: migrate Plate to be a subclass of BaseDBModel.
                p = Plate.getPlateById(db, well.getPlateId());
                platesById.put(p.getId(), p);
            }

            String chem = well.getChemical();
            List<ScanFile> scanFiles = ScanFile.getScanFileByPlateIDRowAndColumn(db, p.getId(),
                    well.getPlateRow(), well.getPlateColumn());

            System.out.format("  %-15s%-6s%-15s%-15s%-15d\n", p.getBarcode(), well.getCoordinatesString(),
                    well.getMsid(), chem == null || chem.isEmpty() ? "--" : chem, scanFiles.size());
            System.out.flush();
        }

        List<Integer> plateIds = Arrays.asList(platesById.keySet().toArray(new Integer[platesById.size()]));
        Collections.sort(plateIds);
        System.out.print("\nAppears in plates:\n");
        for (Integer id : plateIds) {
            Plate p = platesById.get(id);
            System.out.format("  %s: %s\n", p.getBarcode(), p.getName());
        }

        List<String> msids = Arrays.asList(uniqueMSIDs.toArray(new String[uniqueMSIDs.size()]));
        Collections.sort(msids);
        System.out.format("\nMSIDS: %s\n", StringUtils.join(msids, ", "));

        Set<String> availableNegativeControls = new HashSet<>();
        for (Map.Entry<Integer, Plate> entry : platesById.entrySet()) {
            List<LCMSWell> wells = LCMSWell.getInstance().getByPlateId(db, entry.getKey());
            for (LCMSWell well : wells) {
                if (!construct.equals(well.getComposition())) {
                    availableNegativeControls.add(well.getComposition());
                }
            }
        }

        // Print available standards for each step w/ plate barcodes and coordinates.
        System.out.format("\nAvailable Standards:\n");
        Map<Integer, Plate> plateCache = new HashMap<>();
        for (ChemicalAssociatedWithPathway chem : pathwayChems) {
            List<StandardWell> matchingWells = StandardWell.getInstance().getStandardWellsByChemical(db,
                    chem.getChemical());
            for (StandardWell well : matchingWells) {
                if (!plateCache.containsKey(well.getPlateId())) {
                    Plate p = Plate.getPlateById(db, well.getPlateId());
                    plateCache.put(p.getId(), p);
                }
            }
            Map<Integer, List<StandardWell>> standardWellsByPlateId = new HashMap<>();
            for (StandardWell well : matchingWells) {
                List<StandardWell> plateWells = standardWellsByPlateId.get(well.getPlateId());
                if (plateWells == null) {
                    plateWells = new ArrayList<>();
                    standardWellsByPlateId.put(well.getPlateId(), plateWells);
                }
                plateWells.add(well);
            }
            List<Pair<String, Integer>> plateBarcodes = new ArrayList<>(plateCache.size());
            for (Plate p : plateCache.values()) {
                if (p.getBarcode() == null) {
                    plateBarcodes.add(Pair.of("(no barcode)", p.getId()));
                } else {
                    plateBarcodes.add(Pair.of(p.getBarcode(), p.getId()));
                }
            }
            Collections.sort(plateBarcodes);
            System.out.format("  %s:\n", chem.getChemical());
            for (Pair<String, Integer> barcodePair : plateBarcodes) {
                // TODO: hoist this whole sorting/translation step into a utility class.
                List<StandardWell> wells = standardWellsByPlateId.get(barcodePair.getRight());
                if (wells == null) {
                    // Don't print plates that don't apply to this chemical, which can happen because we're caching the plates.
                    continue;
                }
                Collections.sort(wells, new Comparator<StandardWell>() {
                    @Override
                    public int compare(StandardWell o1, StandardWell o2) {
                        int c = o1.getPlateRow().compareTo(o2.getPlateRow());
                        if (c != 0)
                            return c;
                        return o1.getPlateColumn().compareTo(o2.getPlateColumn());
                    }
                });
                List<String> descriptions = new ArrayList<>(wells.size());
                for (StandardWell well : wells) {
                    descriptions.add(String.format("%s in %s%s", well.getCoordinatesString(), well.getMedia(),
                            well.getConcentration() == null ? ""
                                    : String.format(" c. %f", well.getConcentration())));
                }
                System.out.format("    %s: %s\n", barcodePair.getLeft(), StringUtils.join(descriptions, ", "));
            }
        }

        List<String> negativeControlStrains = Arrays
                .asList(availableNegativeControls.toArray(new String[availableNegativeControls.size()]));
        Collections.sort(negativeControlStrains);
        System.out.format("\nAvailable negative controls: %s\n", StringUtils.join(negativeControlStrains, ","));
        System.out.print("\n----------\n");
        System.out.print("\n\n");
    }
}