List of usage examples for java.util Deque add
boolean add(E e);
From source file:bb.mcmc.analysis.GewekeConvergeStat.java
@Override protected double calculateEachProgress(Double stat, Deque<Double> record) { if (!Double.isNaN(stat)) { if (record.size() > 2) { record.pop();/*ww w . ja v a 2s . com*/ } record.add(stat); } double avgStat = 0; for (double d : record) { avgStat += d; } avgStat /= record.size(); // final double progress = Math.exp( rafteryThreshold - avgStat ); // return progress; final double progress = (1 - nd.cumulativeProbability(Math.abs(avgStat))) / gewekeProgressThreshold; // final double tempP = (1-nd.cumulativeProbability(Math.abs(gewekeStat)-gewekeThreshold))/0.5; // R Code // data<- seq(1.96,4,by=0.01) // plot(data, 1-(pnorm(abs(data))-pnorm(1.96))/0.025, type="l", col=2) // plot(data, (1-pnorm(data-1.96))/0.5, type="l", col=2) return progress; }
From source file:logicProteinHypernetwork.analysis.reactions.ComplexMultigraph.java
private void subtract(Set<Interaction> impossible, int vertex) throws NotConnectedException { Set<Integer> visited = new HashSet<Integer>(); Deque<Integer> todo = new ArrayDeque<Integer>(); todo.add(vertex); while (!todo.isEmpty()) { int u = todo.remove(); visited.add(u);// w ww. j a v a2s . co m for (int e : getIncidentEdges(u)) { Interaction i = edgesToInteractions.get(e); if (impossible.contains(i)) { removeEdge(e); edgesToInteractions.remove(e); interactionToEdges.remove(i, e); impossible.remove(i); } } for (int v : getNeighbors(u)) { todo.add(v); } } if (visited.size() < getVertexCount()) { throw new NotConnectedException(); } }
From source file:au.com.cybersearch2.classyfy.ClassyfyLogic.java
public NodeDetailsBean getNodeDetails(Node data) { NodeDetailsBean nodeDetailsBean = new NodeDetailsBean(); // Collect children, distinguishing between folders and categories for (Node child : data.getChildren()) { String title = child.getTitle(); long id = (long) child.getId(); ListItem item = new ListItem("Title", title, id); if (RecordModel.getModel(child.getModel()) == RecordModel.recordFolder) nodeDetailsBean.getFolderTitles().add(item); else/*from www .ja v a 2 s .c o m*/ nodeDetailsBean.getCategoryTitles().add(item); } // Collect node hierarchy up to root node Node node = data.getParent(); Deque<Node> nodeDeque = new ArrayDeque<Node>(); // Walk up to top node while (node.getModel() != NodeType.ROOT)// Top of tree { nodeDeque.add(node); node = node.getParent(); } Iterator<Node> nodeIterator = nodeDeque.descendingIterator(); while (nodeIterator.hasNext()) { node = nodeIterator.next(); String title = node.getTitle(); long id = (long) node.getId(); ListItem item = new ListItem("Title", title, id); nodeDetailsBean.getHierarchy().add(item); } // Build heading from Title and record type StringBuilder builder = new StringBuilder(); builder.append(RecordModel.getNameByNode(data)).append(": "); if ((data.getTitle() != null) && (data.getTitle().length() > 0)) builder.append(data.getTitle()); else builder.append('?'); // This is an error. Handle gracefully. nodeDetailsBean.setHeading(builder.toString()); // Collect details in FieldDescripter order Map<String, Object> valueMap = data.getProperties(); Set<FieldDescriptor> fieldSet = FieldDescriptorSetFactory.instance(data); for (FieldDescriptor descriptor : fieldSet) { Object value = valueMap.get(descriptor.getName()); if (value == null) continue; nodeDetailsBean.getFieldList().add(new ListItem(descriptor.getTitle(), value.toString())); } return nodeDetailsBean; }
From source file:org.lunarray.model.descriptor.accessor.reference.ReferenceBuilder.java
/** * Gets the properties.// ww w. ja v a 2 s . c om * * @return The properties. */ public Deque<Property<?>> getProperties() { final Deque<Property<?>> result = new LinkedList<Property<?>>(); for (final PropertyBuilder<?> property : this.properties) { result.add(property.build()); } return result; }
From source file:org.talend.dataquality.semantic.recognizer.DefaultCategoryRecognizer.java
/** * For the discovery, if a category c matches with the data, * it means all the ancestor categories of c have to match too. * This method increments the ancestor categories of c. * //from w w w . ja v a2s . c om * @param categories, the category result * @param id, the category ID of the matched category c * */ private void incrementAncestorsCategories(Set<String> categories, String id) { Deque<Pair<String, Integer>> catToSee = new ArrayDeque<>(); Set<String> catAlreadySeen = new HashSet<>(); catToSee.add(Pair.of(id, 0)); Pair<String, Integer> currentCategory; while (!catToSee.isEmpty()) { currentCategory = catToSee.pop(); DQCategory dqCategory = crm.getCategoryMetadataById(currentCategory.getLeft()); if (dqCategory != null && !CollectionUtils.isEmpty(dqCategory.getParents())) { int parentLevel = currentCategory.getRight() + 1; for (DQCategory parent : dqCategory.getParents()) { if (!catAlreadySeen.contains(parent.getId())) { catAlreadySeen.add(parent.getId()); catToSee.add(Pair.of(parent.getId(), parentLevel)); DQCategory meta = crm.getCategoryMetadataById(parent.getId()); if (meta != null) { incrementCategory(meta.getName(), meta.getLabel(), parentLevel); categories.add(meta.getName()); } } } } } }
From source file:eu.openanalytics.rsb.rservi.CircularRServiUriSelector.java
private URI getCircular(final Deque<URI> applicationRserviPoolUris) { if (applicationRserviPoolUris.size() == 1) { return applicationRserviPoolUris.peek(); }//ww w .j a va2 s .c o m synchronized (applicationRserviPoolUris) { final URI uri = applicationRserviPoolUris.poll(); applicationRserviPoolUris.add(uri); return uri; } }
From source file:org.lunarray.model.descriptor.accessor.reference.ReferenceBuilder.java
/** * Gets the properties./*from ww w .j a va2 s . c om*/ * * @return The properties. */ public Deque<DescribedProperty<?>> getDescribedProperties() { final Deque<DescribedProperty<?>> result = new LinkedList<DescribedProperty<?>>(); for (final PropertyBuilder<?> property : this.properties) { result.add(property.buildDescribed()); } return result; }
From source file:net.jadler.JadlerMocker.java
private Deque<StubRule> createRules() { final Deque<StubRule> rules = new LinkedList<StubRule>(); for (final Stubbing stub : stubbings) { rules.add(stub.createRule()); }//from ww w . j a v a 2s . c om return rules; }
From source file:org.nuxeo.ecm.platform.routing.core.impl.GraphRouteImpl.java
/** * Finds which transitions are re-looping (feedback arc set). *//*from www . j a v a2s .c om*/ protected void computeLoopTransitions(String startNodeId) throws DocumentRouteException { if (startNodeId == null) { // incomplete graph return; } /* * Depth-first search. In the todo stack, each element records a list of the siblings left to visit at that * depth. After visiting the last sibling, we go back to the parent and at this point mark it as visited in * post-traversal order. */ List<String> postOrder = new LinkedList<String>(); Deque<Deque<String>> stack = new LinkedList<Deque<String>>(); Deque<String> first = new LinkedList<String>(); first.add(startNodeId); stack.push(first); Set<String> done = new HashSet<String>(); for (;;) { // find next sibling String nodeId = stack.peek().peek(); if (nodeId == null) { // last sibling done // go back up one level and mark post-traversal order stack.pop(); // pop empty children if (stack.isEmpty()) { // we are done break; } nodeId = stack.peek().pop(); // pop parent postOrder.add(nodeId); // mark post-traversal order } else if (done.add(nodeId)) { // traverse the next sibling Deque<String> children = new LinkedList<String>(); for (Transition t : getNode(nodeId).getOutputTransitions()) { children.add(t.target); } // add children to stack and recurse stack.push(children); } else { // already traversed stack.peek().pop(); // skip it } } // reverse the post-order to find the topological ordering Collections.reverse(postOrder); Map<String, Integer> ordering = new HashMap<String, Integer>(); int i = 1; for (String nodeId : postOrder) { ordering.put(nodeId, Integer.valueOf(i++)); } // walk the graph and all transitions again // and mark as looping the transitions pointing to a node // with a smaller order that the source done.clear(); Deque<String> todo = new LinkedList<String>(); todo.add(startNodeId); while (!todo.isEmpty()) { String nodeId = todo.pop(); if (done.add(nodeId)) { int source = ordering.get(nodeId).intValue(); for (Transition t : getNode(nodeId).getOutputTransitions()) { todo.push(t.target); // compare orders to detected feeback arcs int target = ordering.get(t.target).intValue(); if (target <= source) { t.loop = true; } } } } }
From source file:io.undertow.server.handlers.proxy.LoadBalancingProxyHTTP2TestCase.java
@Test public void testHttp2ClientMultipleStreamsThreadSafety() throws IOException, URISyntaxException, ExecutionException, InterruptedException, TimeoutException { //not actually a proxy test //but convent to put it here UndertowXnioSsl ssl = new UndertowXnioSsl(DefaultServer.getWorker().getXnio(), OptionMap.EMPTY, DefaultServer.SSL_BUFFER_POOL, DefaultServer.createClientSslContext()); final UndertowClient client = UndertowClient.getInstance(); final ClientConnection connection = client.connect( new URI("https", null, DefaultServer.getHostAddress(), DefaultServer.getHostPort() + 1, "/", null, null),// w ww. j a v a2 s . c om DefaultServer.getWorker(), ssl, DefaultServer.getBufferPool(), OptionMap.create(UndertowOptions.ENABLE_HTTP2, true)).get(); final ExecutorService service = Executors.newFixedThreadPool(10); try { Deque<FutureResult<String>> futures = new ArrayDeque<>(); for (int i = 0; i < 100; ++i) { final FutureResult<String> future = new FutureResult<>(); futures.add(future); service.submit(new Callable<String>() { @Override public String call() throws Exception { ClientRequest cr = new ClientRequest().setMethod(Methods.GET).setPath("/path") .setProtocol(Protocols.HTTP_1_1); connection.sendRequest(cr, new ClientCallback<ClientExchange>() { @Override public void completed(ClientExchange result) { result.setResponseListener(new ClientCallback<ClientExchange>() { @Override public void completed(ClientExchange result) { new StringReadChannelListener(DefaultServer.getBufferPool()) { @Override protected void stringDone(String string) { future.setResult(string); } @Override protected void error(IOException e) { future.setException(e); } }.setup(result.getResponseChannel()); } @Override public void failed(IOException e) { future.setException(e); } }); } @Override public void failed(IOException e) { future.setException(e); } }); return null; } }); } while (!futures.isEmpty()) { FutureResult<String> future = futures.poll(); Assert.assertNotEquals(IoFuture.Status.WAITING, future.getIoFuture().awaitInterruptibly(10, TimeUnit.SECONDS)); Assert.assertEquals("/path", future.getIoFuture().get()); } } finally { service.shutdownNow(); } }