Example usage for java.util Comparator Comparator

List of usage examples for java.util Comparator Comparator

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In this page you can find the example usage for java.util Comparator Comparator.

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Comparator

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Usage

From source file:edu.umd.cloud9.example.bigram.AnalyzeBigramRelativeFrequency.java

@SuppressWarnings({ "static-access" })
public static void main(String[] args) {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));

    CommandLine cmdline = null;/*from   w  w w.ja  va 2s . c o m*/
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        System.exit(-1);
    }

    if (!cmdline.hasOption(INPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(AnalyzeBigramRelativeFrequency.class.getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        System.exit(-1);
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    System.out.println("input path: " + inputPath);

    List<PairOfWritables<PairOfStrings, FloatWritable>> pairs = SequenceFileUtils
            .readDirectory(new Path(inputPath));

    List<PairOfWritables<PairOfStrings, FloatWritable>> list1 = Lists.newArrayList();
    List<PairOfWritables<PairOfStrings, FloatWritable>> list2 = Lists.newArrayList();

    for (PairOfWritables<PairOfStrings, FloatWritable> p : pairs) {
        PairOfStrings bigram = p.getLeftElement();

        if (bigram.getLeftElement().equals("light")) {
            list1.add(p);
        }
        if (bigram.getLeftElement().equals("contain")) {
            list2.add(p);
        }
    }

    Collections.sort(list1, new Comparator<PairOfWritables<PairOfStrings, FloatWritable>>() {
        public int compare(PairOfWritables<PairOfStrings, FloatWritable> e1,
                PairOfWritables<PairOfStrings, FloatWritable> e2) {
            if (e1.getRightElement().compareTo(e2.getRightElement()) == 0) {
                return e1.getLeftElement().compareTo(e2.getLeftElement());
            }

            return e2.getRightElement().compareTo(e1.getRightElement());
        }
    });

    Iterator<PairOfWritables<PairOfStrings, FloatWritable>> iter1 = Iterators.limit(list1.iterator(), 10);
    while (iter1.hasNext()) {
        PairOfWritables<PairOfStrings, FloatWritable> p = iter1.next();
        PairOfStrings bigram = p.getLeftElement();
        System.out.println(bigram + "\t" + p.getRightElement());
    }

    Collections.sort(list2, new Comparator<PairOfWritables<PairOfStrings, FloatWritable>>() {
        public int compare(PairOfWritables<PairOfStrings, FloatWritable> e1,
                PairOfWritables<PairOfStrings, FloatWritable> e2) {
            if (e1.getRightElement().compareTo(e2.getRightElement()) == 0) {
                return e1.getLeftElement().compareTo(e2.getLeftElement());
            }

            return e2.getRightElement().compareTo(e1.getRightElement());
        }
    });

    Iterator<PairOfWritables<PairOfStrings, FloatWritable>> iter2 = Iterators.limit(list2.iterator(), 10);
    while (iter2.hasNext()) {
        PairOfWritables<PairOfStrings, FloatWritable> p = iter2.next();
        PairOfStrings bigram = p.getLeftElement();
        System.out.println(bigram + "\t" + p.getRightElement());
    }
}

From source file:TableSortTwoDirection.java

public static void main(String[] args) {
    // initialize data with keys and random values
    int size = 100;
    Random random = new Random();
    final int[][] data = new int[size][];
    for (int i = 0; i < data.length; i++) {
        data[i] = new int[] { i, random.nextInt() };
    }/*from w w  w.jav  a2 s  .  c  om*/
    // create a virtual table to display data
    Display display = new Display();
    Shell shell = new Shell(display);
    shell.setLayout(new FillLayout());
    final Table table = new Table(shell, SWT.VIRTUAL);
    table.setHeaderVisible(true);
    table.setLinesVisible(true);
    table.setItemCount(size);
    final TableColumn column1 = new TableColumn(table, SWT.NONE);
    column1.setText("Key");
    column1.setWidth(200);
    final TableColumn column2 = new TableColumn(table, SWT.NONE);
    column2.setText("Value");
    column2.setWidth(200);
    table.addListener(SWT.SetData, new Listener() {
        public void handleEvent(Event e) {
            TableItem item = (TableItem) e.item;
            int index = table.indexOf(item);
            int[] datum = data[index];
            item.setText(new String[] { Integer.toString(datum[0]), Integer.toString(datum[1]) });
        }
    });
    // Add sort indicator and sort data when column selected
    Listener sortListener = new Listener() {
        public void handleEvent(Event e) {
            // determine new sort column and direction
            TableColumn sortColumn = table.getSortColumn();
            TableColumn currentColumn = (TableColumn) e.widget;
            int dir = table.getSortDirection();
            if (sortColumn == currentColumn) {
                dir = dir == SWT.UP ? SWT.DOWN : SWT.UP;
            } else {
                table.setSortColumn(currentColumn);
                dir = SWT.UP;
            }
            // sort the data based on column and direction
            final int index = currentColumn == column1 ? 0 : 1;
            final int direction = dir;
            Arrays.sort(data, new Comparator() {
                public int compare(Object arg0, Object arg1) {
                    int[] a = (int[]) arg0;
                    int[] b = (int[]) arg1;
                    if (a[index] == b[index])
                        return 0;
                    if (direction == SWT.UP) {
                        return a[index] < b[index] ? -1 : 1;
                    }
                    return a[index] < b[index] ? 1 : -1;
                }
            });
            // update data displayed in table
            table.setSortDirection(dir);
            table.clearAll();
        }
    };
    column1.addListener(SWT.Selection, sortListener);
    column2.addListener(SWT.Selection, sortListener);
    table.setSortColumn(column1);
    table.setSortDirection(SWT.UP);
    shell.setSize(shell.computeSize(SWT.DEFAULT, SWT.DEFAULT).x, 300);
    shell.open();
    while (!shell.isDisposed()) {
        if (!display.readAndDispatch())
            display.sleep();
    }
    display.dispose();
}

From source file:com.datazuul.iiif.presentation.api.ManifestGenerator.java

public static void main(String[] args)
        throws ParseException, JsonProcessingException, IOException, URISyntaxException {
    Options options = new Options();
    options.addOption("d", true, "Absolute file path to the directory containing the image files.");

    CommandLineParser parser = new DefaultParser();
    CommandLine cmd = parser.parse(options, args);

    if (cmd.hasOption("d")) {
        String imageDirectoryPath = cmd.getOptionValue("d");
        Path imageDirectory = Paths.get(imageDirectoryPath);
        final List<Path> files = new ArrayList<>();
        try {/* w ww .j a v a 2  s.c om*/
            Files.walkFileTree(imageDirectory, new SimpleFileVisitor<Path>() {
                @Override
                public FileVisitResult visitFile(Path file, BasicFileAttributes attrs) throws IOException {
                    if (!attrs.isDirectory()) {
                        // TODO there must be a more elegant solution for filtering jpeg files...
                        if (file.getFileName().toString().endsWith("jpg")) {
                            files.add(file);
                        }
                    }
                    return FileVisitResult.CONTINUE;
                }
            });
        } catch (IOException e) {
            e.printStackTrace();
        }
        Collections.sort(files, new Comparator() {
            @Override
            public int compare(Object fileOne, Object fileTwo) {
                String filename1 = ((Path) fileOne).getFileName().toString();
                String filename2 = ((Path) fileTwo).getFileName().toString();

                try {
                    // numerical sorting
                    Integer number1 = Integer.parseInt(filename1.substring(0, filename1.lastIndexOf(".")));
                    Integer number2 = Integer.parseInt(filename2.substring(0, filename2.lastIndexOf(".")));
                    return number1.compareTo(number2);
                } catch (NumberFormatException nfe) {
                    // alpha-numerical sorting
                    return filename1.compareToIgnoreCase(filename2);
                }
            }
        });

        generateManifest(imageDirectory.getFileName().toString(), files);
    } else {
        // automatically generate the help statement
        HelpFormatter formatter = new HelpFormatter();
        formatter.printHelp("ManifestGenerator", options);
    }
}

From source file:edu.umd.cloud9.example.bigram.AnalyzeBigramRelativeFrequencyJson.java

@SuppressWarnings({ "static-access" })
public static void main(String[] args) {
    Options options = new Options();

    options.addOption(OptionBuilder.withArgName("path").hasArg().withDescription("input path").create(INPUT));

    CommandLine cmdline = null;/*w ww  .j  a v a  2s. com*/
    CommandLineParser parser = new GnuParser();

    try {
        cmdline = parser.parse(options, args);
    } catch (ParseException exp) {
        System.err.println("Error parsing command line: " + exp.getMessage());
        System.exit(-1);
    }

    if (!cmdline.hasOption(INPUT)) {
        System.out.println("args: " + Arrays.toString(args));
        HelpFormatter formatter = new HelpFormatter();
        formatter.setWidth(120);
        formatter.printHelp(AnalyzeBigramRelativeFrequencyJson.class.getName(), options);
        ToolRunner.printGenericCommandUsage(System.out);
        System.exit(-1);
    }

    String inputPath = cmdline.getOptionValue(INPUT);
    System.out.println("input path: " + inputPath);

    List<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>> pairs = SequenceFileUtils
            .readDirectory(new Path(inputPath));

    List<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>> list1 = Lists.newArrayList();
    List<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>> list2 = Lists.newArrayList();

    for (PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> p : pairs) {
        BigramRelativeFrequencyJson.MyTuple bigram = p.getLeftElement();

        if (bigram.getJsonObject().get("Left").getAsString().equals("light")) {
            list1.add(p);
        }

        if (bigram.getJsonObject().get("Left").getAsString().equals("contain")) {
            list2.add(p);
        }
    }

    Collections.sort(list1,
            new Comparator<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>>() {
                public int compare(PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> e1,
                        PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> e2) {
                    if (e1.getRightElement().compareTo(e2.getRightElement()) == 0) {
                        return e1.getLeftElement().compareTo(e2.getLeftElement());
                    }

                    return e2.getRightElement().compareTo(e1.getRightElement());
                }
            });

    Iterator<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>> iter1 = Iterators
            .limit(list1.iterator(), 10);
    while (iter1.hasNext()) {
        PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> p = iter1.next();
        BigramRelativeFrequencyJson.MyTuple bigram = p.getLeftElement();
        System.out.println(bigram + "\t" + p.getRightElement());
    }

    Collections.sort(list2,
            new Comparator<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>>() {
                public int compare(PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> e1,
                        PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> e2) {
                    if (e1.getRightElement().compareTo(e2.getRightElement()) == 0) {
                        return e1.getLeftElement().compareTo(e2.getLeftElement());
                    }

                    return e2.getRightElement().compareTo(e1.getRightElement());
                }
            });

    Iterator<PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable>> iter2 = Iterators
            .limit(list2.iterator(), 10);
    while (iter2.hasNext()) {
        PairOfWritables<BigramRelativeFrequencyJson.MyTuple, FloatWritable> p = iter2.next();
        BigramRelativeFrequencyJson.MyTuple bigram = p.getLeftElement();
        System.out.println(bigram + "\t" + p.getRightElement());
    }
}

From source file:de.tudarmstadt.ukp.argumentation.data.roomfordebate.DataFetcher.java

public static void main(String[] args) throws Exception {
    File crawledPagesFolder = new File(args[0]);
    if (!crawledPagesFolder.exists()) {
        crawledPagesFolder.mkdirs();// w ww . ja v a2s  .co m
    }

    File outputFolder = new File(args[1]);
    if (!outputFolder.exists()) {
        outputFolder.mkdirs();
    }

    // read links from text file
    final String urlsResourceName = "roomfordebate-urls.txt";

    InputStream urlsStream = DataFetcher.class.getClassLoader().getResourceAsStream(urlsResourceName);

    if (urlsStream == null) {
        throw new IOException("Cannot find resource " + urlsResourceName + " on the classpath");
    }

    // read list of urls
    List<String> urls = new ArrayList<>();
    LineIterator iterator = IOUtils.lineIterator(urlsStream, "utf-8");
    while (iterator.hasNext()) {
        // ignore commented url (line starts with #)
        String line = iterator.nextLine();
        if (!line.startsWith("#") && !line.trim().isEmpty()) {
            urls.add(line.trim());
        }
    }

    // download all
    crawlPages(urls, crawledPagesFolder);

    List<File> files = new ArrayList<>(FileUtils.listFiles(crawledPagesFolder, null, false));
    Collections.sort(files, new Comparator<File>() {
        @Override
        public int compare(File o1, File o2) {
            return o1.getName().compareTo(o2.getName());
        }
    });

    int idCounter = 0;

    for (File file : files) {
        NYTimesCommentsScraper commentsScraper = new NYTimesCommentsScraper();
        NYTimesArticleExtractor extractor = new NYTimesArticleExtractor();

        String html = FileUtils.readFileToString(file, "utf-8");

        idCounter++;
        File outputFileArticle = new File(outputFolder, String.format("Cx%03d.txt", idCounter));
        File outputFileComments = new File(outputFolder, String.format("Dx%03d.txt", idCounter));

        try {
            List<Comment> comments = commentsScraper.extractComments(html);
            Article article = extractor.extractArticle(html);

            saveArticleToText(article, outputFileArticle);
            System.out.println("Saved to " + outputFileArticle);

            saveCommentsToText(comments, outputFileComments, article);
            System.out.println("Saved to " + outputFileComments);
        } catch (IOException ex) {
            System.err.println(file.getName() + "\n" + ex.getMessage());
        }
    }
}

From source file:br.ufpb.dicomflow.integrationAPI.tools.SendService.java

public static void main(final String args[]) {

    try {//from   www  . j a v  a  2s . c o  m
        CommandLine cl = parseComandLine(args);

        CLIUtils.configureLog(cl);

        CLIUtils.configureProperties(properties, cl, CLIUtils.SEND_PROPERTIES);

        CLIUtils.configureEncryptProperties(signer, privateKey, cipher, cl);

        configureService(service, cl);

        sendService(cl);

    } catch (ParseException e) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.setOptionComparator(new Comparator<Option>() {

            @Override
            public int compare(Option o1, Option o2) {
                return 0;
            }
        });

        formatter.printHelp(rb.getString("send-usage"), rb.getString("send-description"), opts,
                rb.getString("send-example"), true);
    } catch (PropertyNotFoundException e) {
        Logger.ef(e, rb.getString("load-property-exception"));
    } catch (JAXBException e) {
        Logger.ef(e, rb.getString("load-service-exception"));
    } catch (ClassNotFoundException e) {
        Logger.ef(e, rb.getString("load-service-exception"));
    } catch (UnrecoverableKeyException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (KeyStoreException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (NoSuchAlgorithmException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (CertificateException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (FileNotFoundException e) {
        Logger.ef(e, rb.getString("load-file-exception"));
    } catch (IOException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    }

}

From source file:br.ufpb.dicomflow.integrationAPI.tools.ReadService.java

public static void main(final String args[]) {

    try {/*from w  w w  .ja  va2  s  .  c om*/
        CommandLine cl = parseComandLine(args);

        CLIUtils.configureLog(cl);

        CLIUtils.configureProperties(properties, cl, CLIUtils.READ_PROPERTIES);

        CLIUtils.configureEncryptProperties(cipher, privateKey, signer, cl);

        configureFilterProperties(filter, cl);

        readService(cl);

    } catch (ParseException e) {
        HelpFormatter formatter = new HelpFormatter();
        formatter.setOptionComparator(new Comparator<Option>() {

            @Override
            public int compare(Option o1, Option o2) {
                return 0;
            }
        });

        formatter.printHelp(rb.getString("read-usage"), rb.getString("read-description"), opts,
                rb.getString("read-example"), true);
    } catch (PropertyNotFoundException e) {
        Logger.ef(e, rb.getString("load-property-exception"));
    } catch (UnrecoverableKeyException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (KeyStoreException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (NoSuchAlgorithmException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (CertificateException e) {
        Logger.ef(e, rb.getString("load-encrypt-exception"));
    } catch (FileNotFoundException e) {
        Logger.ef(e, rb.getString("load-file-exception"));
    } catch (IOException e) {
        Logger.ef(e, rb.getString("load-file-exception"));
    } catch (NumberFormatException e) {
        Logger.ef(e, rb.getString("load-filter-exception"));
    } catch (java.text.ParseException e) {
        Logger.ef(e, rb.getString("load-filter-exception"));
    } catch (JAXBException e) {
        Logger.ef(e, rb.getString("load-service-exception"));
    }

}

From source file:io.druid.examples.rabbitmq.RabbitMQProducerMain.java

public static void main(String[] args) throws Exception {
    // We use a List to keep track of option insertion order. See below.
    final List<Option> optionList = new ArrayList<Option>();

    optionList.add(OptionBuilder.withLongOpt("help").withDescription("display this help message").create("h"));
    optionList.add(OptionBuilder.withLongOpt("hostname").hasArg()
            .withDescription("the hostname of the AMQP broker [defaults to AMQP library default]").create("b"));
    optionList.add(OptionBuilder.withLongOpt("port").hasArg()
            .withDescription("the port of the AMQP broker [defaults to AMQP library default]").create("n"));
    optionList.add(OptionBuilder.withLongOpt("username").hasArg()
            .withDescription("username to connect to the AMQP broker [defaults to AMQP library default]")
            .create("u"));
    optionList.add(OptionBuilder.withLongOpt("password").hasArg()
            .withDescription("password to connect to the AMQP broker [defaults to AMQP library default]")
            .create("p"));
    optionList.add(OptionBuilder.withLongOpt("vhost").hasArg()
            .withDescription("name of virtual host on the AMQP broker [defaults to AMQP library default]")
            .create("v"));
    optionList.add(OptionBuilder.withLongOpt("exchange").isRequired().hasArg()
            .withDescription("name of the AMQP exchange [required - no default]").create("e"));
    optionList.add(OptionBuilder.withLongOpt("key").hasArg()
            .withDescription("the routing key to use when sending messages [default: 'default.routing.key']")
            .create("k"));
    optionList.add(OptionBuilder.withLongOpt("type").hasArg()
            .withDescription("the type of exchange to create [default: 'topic']").create("t"));
    optionList.add(OptionBuilder.withLongOpt("durable")
            .withDescription("if set, a durable exchange will be declared [default: not set]").create("d"));
    optionList.add(OptionBuilder.withLongOpt("autodelete")
            .withDescription("if set, an auto-delete exchange will be declared [default: not set]")
            .create("a"));
    optionList.add(OptionBuilder.withLongOpt("single")
            .withDescription("if set, only a single message will be sent [default: not set]").create("s"));
    optionList.add(OptionBuilder.withLongOpt("start").hasArg()
            .withDescription("time to use to start sending messages from [default: 2010-01-01T00:00:00]")
            .create());// w ww .j a  v  a  2s  .  c  o m
    optionList.add(OptionBuilder.withLongOpt("stop").hasArg().withDescription(
            "time to use to send messages until (format: '2013-07-18T23:45:59') [default: current time]")
            .create());
    optionList.add(OptionBuilder.withLongOpt("interval").hasArg()
            .withDescription("the interval to add to the timestamp between messages in seconds [default: 10]")
            .create());
    optionList.add(OptionBuilder.withLongOpt("delay").hasArg()
            .withDescription("the delay between sending messages in milliseconds [default: 100]").create());

    // An extremely silly hack to maintain the above order in the help formatting.
    HelpFormatter formatter = new HelpFormatter();
    // Add a comparator to the HelpFormatter using the ArrayList above to sort by insertion order.
    formatter.setOptionComparator(new Comparator() {
        @Override
        public int compare(Object o1, Object o2) {
            // I know this isn't fast, but who cares! The list is short.
            return optionList.indexOf(o1) - optionList.indexOf(o2);
        }
    });

    // Now we can add all the options to an Options instance. This is dumb!
    Options options = new Options();
    for (Option option : optionList) {
        options.addOption(option);
    }

    CommandLine cmd = null;

    try {
        cmd = new BasicParser().parse(options, args);

    } catch (ParseException e) {
        formatter.printHelp("RabbitMQProducerMain", e.getMessage(), options, null);
        System.exit(1);
    }

    if (cmd.hasOption("h")) {
        formatter.printHelp("RabbitMQProducerMain", options);
        System.exit(2);
    }

    ConnectionFactory factory = new ConnectionFactory();

    if (cmd.hasOption("b")) {
        factory.setHost(cmd.getOptionValue("b"));
    }
    if (cmd.hasOption("u")) {
        factory.setUsername(cmd.getOptionValue("u"));
    }
    if (cmd.hasOption("p")) {
        factory.setPassword(cmd.getOptionValue("p"));
    }
    if (cmd.hasOption("v")) {
        factory.setVirtualHost(cmd.getOptionValue("v"));
    }
    if (cmd.hasOption("n")) {
        factory.setPort(Integer.parseInt(cmd.getOptionValue("n")));
    }

    String exchange = cmd.getOptionValue("e");
    String routingKey = "default.routing.key";
    if (cmd.hasOption("k")) {
        routingKey = cmd.getOptionValue("k");
    }

    boolean durable = cmd.hasOption("d");
    boolean autoDelete = cmd.hasOption("a");
    String type = cmd.getOptionValue("t", "topic");
    boolean single = cmd.hasOption("single");
    int interval = Integer.parseInt(cmd.getOptionValue("interval", "10"));
    int delay = Integer.parseInt(cmd.getOptionValue("delay", "100"));

    SimpleDateFormat sdf = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss");
    Date stop = sdf.parse(cmd.getOptionValue("stop", sdf.format(new Date())));

    Random r = new Random();
    Calendar timer = Calendar.getInstance();
    timer.setTime(sdf.parse(cmd.getOptionValue("start", "2010-01-01T00:00:00")));

    String msg_template = "{\"utcdt\": \"%s\", \"wp\": %d, \"gender\": \"%s\", \"age\": %d}";

    Connection connection = factory.newConnection();
    Channel channel = connection.createChannel();

    channel.exchangeDeclare(exchange, type, durable, autoDelete, null);

    do {
        int wp = (10 + r.nextInt(90)) * 100;
        String gender = r.nextBoolean() ? "male" : "female";
        int age = 20 + r.nextInt(70);

        String line = String.format(msg_template, sdf.format(timer.getTime()), wp, gender, age);

        channel.basicPublish(exchange, routingKey, null, line.getBytes());

        System.out.println("Sent message: " + line);

        timer.add(Calendar.SECOND, interval);

        Thread.sleep(delay);
    } while ((!single && stop.after(timer.getTime())));

    connection.close();
}

From source file:guardar.en.base.de.datos.MainServidor.java

public static void main(String[] args)
        throws ParserConfigurationException, SAXException, IOException, ClassNotFoundException {

    Mongo mongo = new Mongo("localhost", 27017);

    // nombre de la base de datos
    DB database = mongo.getDB("paginas");
    // coleccion de la db
    DBCollection collection = database.getCollection("indice");
    DBCollection collection_textos = database.getCollection("tabla");
    ArrayList<String> lista_textos = new ArrayList();

    try {/*  w  w  w .j a v  a 2s.  c om*/
        ServerSocket servidor = new ServerSocket(4545); // Crear un servidor en pausa hasta que un cliente llegue.
        while (true) {
            String aux = new String();
            lista_textos.clear();
            Socket clienteNuevo = servidor.accept();// Si llega se acepta.
            // Queda en pausa otra vez hasta que un objeto llegue.
            ObjectInputStream entrada = new ObjectInputStream(clienteNuevo.getInputStream());

            JSONObject request = (JSONObject) entrada.readObject();
            String b = (String) request.get("id");
            //hacer una query a la base de datos con la palabra que se quiere obtener

            BasicDBObject query = new BasicDBObject("palabra", b);
            DBCursor cursor = collection.find(query);
            ArrayList<DocumentosDB> lista_doc = new ArrayList<>();
            // de la query tomo el campo documentos y los agrego a una lista
            try {
                while (cursor.hasNext()) {
                    //System.out.println(cursor.next());
                    BasicDBList campo_documentos = (BasicDBList) cursor.next().get("documentos");
                    // en el for voy tomando uno por uno los elementos en el campo documentos
                    for (Iterator<Object> it = campo_documentos.iterator(); it.hasNext();) {
                        BasicDBObject dbo = (BasicDBObject) it.next();
                        //DOC tiene id y frecuencia
                        DocumentosDB doc = new DocumentosDB();
                        doc.makefn2(dbo);
                        //int id = (int)doc.getId_documento();
                        //int f = (int)doc.getFrecuencia();

                        lista_doc.add(doc);

                        //*******************************************

                        //********************************************

                        //QUERY A LA COLECCION DE TEXTOS
                        /* BasicDBObject query_textos = new BasicDBObject("id", doc.getId_documento());//query
                         DBCursor cursor_textos = collection_textos.find(query_textos);
                         try {
                        while (cursor_textos.hasNext()) {
                                    
                                    
                            DBObject obj = cursor_textos.next();
                                
                            String titulo = (String) obj.get("titulo");
                            titulo = titulo + "\n\n";
                            String texto = (String) obj.get("texto");
                                
                            String texto_final = titulo + texto;
                            aux = texto_final;
                            lista_textos.add(texto_final);
                        }
                         } finally {
                        cursor_textos.close();
                         }*/
                        //System.out.println(doc.getId_documento());
                        //System.out.println(doc.getFrecuencia());

                    } // end for

                } //end while query

            } finally {
                cursor.close();
            }

            // ordeno la lista de menor a mayor
            Collections.sort(lista_doc, new Comparator<DocumentosDB>() {

                @Override
                public int compare(DocumentosDB o1, DocumentosDB o2) {
                    //throw new UnsupportedOperationException("Not supported yet."); //To change body of generated methods, choose Tools | Templates.
                    return o1.getFrecuencia().compareTo(o2.getFrecuencia());
                }
            });
            int tam = lista_doc.size() - 1;
            for (int j = tam; j >= 0; j--) {

                BasicDBObject query_textos = new BasicDBObject("id",
                        (int) lista_doc.get(j).getId_documento().intValue());//query
                DBCursor cursor_textos = collection_textos.find(query_textos);// lo busco
                try {
                    while (cursor_textos.hasNext()) {

                        DBObject obj = cursor_textos.next();
                        String titulo = "*******************************";
                        titulo += (String) obj.get("titulo");
                        int f = (int) lista_doc.get(j).getFrecuencia().intValue();
                        String strinf = Integer.toString(f);
                        titulo += "******************************* frecuencia:" + strinf;
                        titulo = titulo + "\n\n";

                        String texto = (String) obj.get("texto");

                        String texto_final = titulo + texto + "\n\n";
                        aux = aux + texto_final;
                        //lista_textos.add(texto_final);
                    }
                } finally {
                    cursor_textos.close();
                }

            }

            //actualizar el cache
            try {
                Socket cliente_cache = new Socket("localhost", 4500); // nos conectamos con el servidor
                ObjectOutputStream mensaje_cache = new ObjectOutputStream(cliente_cache.getOutputStream()); // get al output del servidor, que es cliente : socket del cliente q se conecto al server
                JSONObject actualizacion_cache = new JSONObject();
                actualizacion_cache.put("actualizacion", 1);
                actualizacion_cache.put("busqueda", b);
                actualizacion_cache.put("respuesta", aux);
                mensaje_cache.writeObject(actualizacion_cache); // envio el msj al servidor
            } catch (Exception ex) {

            }

            //RESPONDER DESDE EL SERVIDORIndex al FRONT
            ObjectOutputStream resp = new ObjectOutputStream(clienteNuevo.getOutputStream());// obtengo el output del cliente para mandarle un msj
            resp.writeObject(aux);
            System.out.println("msj enviado desde el servidor");

        }
    } catch (IOException ex) {
        Logger.getLogger(MainServidor.class.getName()).log(Level.SEVERE, null, ex);
    }

}

From source file:com.act.lcms.db.io.PrintConstructInfo.java

public static void main(String[] args) throws Exception {
    Options opts = new Options();
    for (Option.Builder b : OPTION_BUILDERS) {
        opts.addOption(b.build());/*w w  w .  j a  va2 s.  c o m*/
    }

    CommandLine cl = null;
    try {
        CommandLineParser parser = new DefaultParser();
        cl = parser.parse(opts, args);
    } catch (ParseException e) {
        System.err.format("Argument parsing failed: %s\n", e.getMessage());
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        System.exit(1);
    }

    if (cl.hasOption("help")) {
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        return;
    }

    File lcmsDir = new File(cl.getOptionValue(OPTION_DIRECTORY));
    if (!lcmsDir.isDirectory()) {
        System.err.format("File at %s is not a directory\n", lcmsDir.getAbsolutePath());
        HELP_FORMATTER.printHelp(LoadPlateCompositionIntoDB.class.getCanonicalName(), HELP_MESSAGE, opts, null,
                true);
        System.exit(1);
    }

    try (DB db = DB.openDBFromCLI(cl)) {
        System.out.print("Loading/updating LCMS scan files into DB\n");
        ScanFile.insertOrUpdateScanFilesInDirectory(db, lcmsDir);

        String construct = cl.getOptionValue(OPTION_CONSTRUCT);
        List<LCMSWell> lcmsWells = LCMSWell.getInstance().getByConstructID(db, construct);
        Collections.sort(lcmsWells, new Comparator<LCMSWell>() {
            @Override
            public int compare(LCMSWell o1, LCMSWell o2) {
                return o1.getId().compareTo(o2.getId());
            }
        });

        Set<String> uniqueMSIDs = new HashSet<>();
        Map<Integer, Plate> platesById = new HashMap<>();

        System.out.format("\n\n-- Construct %s --\n\n", construct);

        List<ChemicalAssociatedWithPathway> pathwayChems = ChemicalAssociatedWithPathway.getInstance()
                .getChemicalsAssociatedWithPathwayByConstructId(db, construct);
        System.out.print("Chemicals associated with pathway:\n");
        System.out.format("  %-8s%-15s%-45s\n", "index", "kind", "chemical");
        for (ChemicalAssociatedWithPathway chem : pathwayChems) {
            System.out.format("  %-8d%-15s%-45s\n", chem.getIndex(), chem.getKind(), chem.getChemical());
        }

        System.out.print("\nLCMS wells:\n");
        System.out.format("  %-15s%-6s%-15s%-15s%-15s\n", "barcode", "well", "msid", "fed", "lcms_count");
        for (LCMSWell well : lcmsWells) {
            uniqueMSIDs.add(well.getMsid());

            Plate p = platesById.get(well.getPlateId());
            if (p == null) {
                // TODO: migrate Plate to be a subclass of BaseDBModel.
                p = Plate.getPlateById(db, well.getPlateId());
                platesById.put(p.getId(), p);
            }

            String chem = well.getChemical();
            List<ScanFile> scanFiles = ScanFile.getScanFileByPlateIDRowAndColumn(db, p.getId(),
                    well.getPlateRow(), well.getPlateColumn());

            System.out.format("  %-15s%-6s%-15s%-15s%-15d\n", p.getBarcode(), well.getCoordinatesString(),
                    well.getMsid(), chem == null || chem.isEmpty() ? "--" : chem, scanFiles.size());
            System.out.flush();
        }

        List<Integer> plateIds = Arrays.asList(platesById.keySet().toArray(new Integer[platesById.size()]));
        Collections.sort(plateIds);
        System.out.print("\nAppears in plates:\n");
        for (Integer id : plateIds) {
            Plate p = platesById.get(id);
            System.out.format("  %s: %s\n", p.getBarcode(), p.getName());
        }

        List<String> msids = Arrays.asList(uniqueMSIDs.toArray(new String[uniqueMSIDs.size()]));
        Collections.sort(msids);
        System.out.format("\nMSIDS: %s\n", StringUtils.join(msids, ", "));

        Set<String> availableNegativeControls = new HashSet<>();
        for (Map.Entry<Integer, Plate> entry : platesById.entrySet()) {
            List<LCMSWell> wells = LCMSWell.getInstance().getByPlateId(db, entry.getKey());
            for (LCMSWell well : wells) {
                if (!construct.equals(well.getComposition())) {
                    availableNegativeControls.add(well.getComposition());
                }
            }
        }

        // Print available standards for each step w/ plate barcodes and coordinates.
        System.out.format("\nAvailable Standards:\n");
        Map<Integer, Plate> plateCache = new HashMap<>();
        for (ChemicalAssociatedWithPathway chem : pathwayChems) {
            List<StandardWell> matchingWells = StandardWell.getInstance().getStandardWellsByChemical(db,
                    chem.getChemical());
            for (StandardWell well : matchingWells) {
                if (!plateCache.containsKey(well.getPlateId())) {
                    Plate p = Plate.getPlateById(db, well.getPlateId());
                    plateCache.put(p.getId(), p);
                }
            }
            Map<Integer, List<StandardWell>> standardWellsByPlateId = new HashMap<>();
            for (StandardWell well : matchingWells) {
                List<StandardWell> plateWells = standardWellsByPlateId.get(well.getPlateId());
                if (plateWells == null) {
                    plateWells = new ArrayList<>();
                    standardWellsByPlateId.put(well.getPlateId(), plateWells);
                }
                plateWells.add(well);
            }
            List<Pair<String, Integer>> plateBarcodes = new ArrayList<>(plateCache.size());
            for (Plate p : plateCache.values()) {
                if (p.getBarcode() == null) {
                    plateBarcodes.add(Pair.of("(no barcode)", p.getId()));
                } else {
                    plateBarcodes.add(Pair.of(p.getBarcode(), p.getId()));
                }
            }
            Collections.sort(plateBarcodes);
            System.out.format("  %s:\n", chem.getChemical());
            for (Pair<String, Integer> barcodePair : plateBarcodes) {
                // TODO: hoist this whole sorting/translation step into a utility class.
                List<StandardWell> wells = standardWellsByPlateId.get(barcodePair.getRight());
                if (wells == null) {
                    // Don't print plates that don't apply to this chemical, which can happen because we're caching the plates.
                    continue;
                }
                Collections.sort(wells, new Comparator<StandardWell>() {
                    @Override
                    public int compare(StandardWell o1, StandardWell o2) {
                        int c = o1.getPlateRow().compareTo(o2.getPlateRow());
                        if (c != 0)
                            return c;
                        return o1.getPlateColumn().compareTo(o2.getPlateColumn());
                    }
                });
                List<String> descriptions = new ArrayList<>(wells.size());
                for (StandardWell well : wells) {
                    descriptions.add(String.format("%s in %s%s", well.getCoordinatesString(), well.getMedia(),
                            well.getConcentration() == null ? ""
                                    : String.format(" c. %f", well.getConcentration())));
                }
                System.out.format("    %s: %s\n", barcodePair.getLeft(), StringUtils.join(descriptions, ", "));
            }
        }

        List<String> negativeControlStrains = Arrays
                .asList(availableNegativeControls.toArray(new String[availableNegativeControls.size()]));
        Collections.sort(negativeControlStrains);
        System.out.format("\nAvailable negative controls: %s\n", StringUtils.join(negativeControlStrains, ","));
        System.out.print("\n----------\n");
        System.out.print("\n\n");
    }
}