List of usage examples for java.util Collections reverseOrder
@SuppressWarnings("unchecked") public static <T> Comparator<T> reverseOrder()
From source file:org.apache.geode.management.internal.cli.GfshParser.java
private CommandTarget locateExactMatchingTarget(final String userInput)// exact matching throws IllegalArgumentException, IllegalAccessException, InvocationTargetException { CommandTarget commandTarget = null;/* w ww .ja va 2 s. c om*/ Map<String, CommandTarget> commandTargetsMap = commandManager.getCommands(); // Reverse sort the command names because we should start from longer names // E.g. Consider commands "A", "A B" & user input as "A B --opt1=val1" // In this case, "A B" is the most probable match & should be matched first // which can be achieved by reversing natural order of sorting. Set<String> commandNamesReverseSorted = new TreeSet<String>(Collections.reverseOrder()); commandNamesReverseSorted.addAll(commandTargetsMap.keySet()); // Now we need to locate the CommandTargets from the entries in the map for (final String commandName : commandNamesReverseSorted) { if (userInput.startsWith(commandName) && commandWordsMatch(userInput, commandName)) { // This means that the user has entered the command & name matches exactly commandTarget = commandTargetsMap.get(commandName); if (commandTarget != null) { String remainingBuffer = StringUtils.removeStart(userInput, commandName); commandTarget = commandTarget.duplicate(commandName, remainingBuffer); break; } } } return commandTarget; }
From source file:org.evosuite.testcase.TestFactory.java
/** * Delete the statement at position from the test case and remove all * references to it/* www .j a va 2 s . c om*/ * * @param test * @param position * @return false if it was not possible to delete the statement * @throws ConstructionFailedException */ public boolean deleteStatement(TestCase test, int position) throws ConstructionFailedException { if (!ConstraintVerifier.canDelete(test, position)) { return false; } logger.debug("Deleting target statement - {}", position); Set<Integer> toDelete = new LinkedHashSet<>(); recursiveDeleteInclusion(test, toDelete, position); List<Integer> pos = new ArrayList<>(toDelete); Collections.sort(pos, Collections.reverseOrder()); for (Integer i : pos) { logger.debug("Deleting statement: {}", i); test.remove(i); } return true; }
From source file:org.oscarehr.PMmodule.web.ClientManagerAction.java
private void setEditAttributes(ActionForm form, HttpServletRequest request, String demographicNo) { DynaActionForm clientForm = (DynaActionForm) form; LoggedInInfo loggedInInfo = LoggedInInfo.loggedInInfo.get(); Integer facilityId = loggedInInfo.currentFacility.getId(); ClientManagerFormBean tabBean = (ClientManagerFormBean) clientForm.get("view"); Integer demographicId = Integer.valueOf(demographicNo); request.setAttribute("id", demographicNo); request.setAttribute("client", clientManager.getClientByDemographicNo(demographicNo)); String providerNo = getProviderNo(request); // program domain List<Program> programDomain = new ArrayList<Program>(); for (Iterator<?> i = providerManager.getProgramDomain(providerNo).iterator(); i.hasNext();) { ProgramProvider programProvider = (ProgramProvider) i.next(); programDomain.add(programManager.getProgram(programProvider.getProgramId())); }/*from w w w .j a v a2 s .co m*/ request.setAttribute("programDomain", programDomain); // check role permission HttpSession se = request.getSession(); List admissions = admissionManager.getCurrentAdmissions(Integer.valueOf(demographicNo)); for (Iterator it = admissions.iterator(); it.hasNext();) { Admission admission = (Admission) it.next(); String inProgramId = String.valueOf(admission.getProgramId()); String inProgramType = admission.getProgramType(); if ("service".equalsIgnoreCase(inProgramType)) { se.setAttribute("performDischargeService", new Boolean(caseManagementManager .hasAccessRight("perform discharges", "access", providerNo, demographicNo, inProgramId))); se.setAttribute("performAdmissionService", new Boolean(caseManagementManager .hasAccessRight("perform admissions", "access", providerNo, demographicNo, inProgramId))); } else if ("bed".equalsIgnoreCase(inProgramType)) { se.setAttribute("performDischargeBed", new Boolean(caseManagementManager .hasAccessRight("perform discharges", "access", providerNo, demographicNo, inProgramId))); se.setAttribute("performAdmissionBed", new Boolean(caseManagementManager .hasAccessRight("perform admissions", "access", providerNo, demographicNo, inProgramId))); se.setAttribute("performBedAssignments", new Boolean(caseManagementManager.hasAccessRight("perform bed assignments", "access", providerNo, demographicNo, inProgramId))); } } // tab override - from survey module String tabOverride = (String) request.getAttribute("tab.override"); if (tabOverride != null && tabOverride.length() > 0) { tabBean.setTab(tabOverride); } if (tabBean.getTab().equals("Summary")) { /* survey module */ request.setAttribute("survey_list", surveyManager.getAllFormsForCurrentProviderAndCurrentFacility()); request.setAttribute("surveys", surveyManager.getFormsForCurrentProviderAndCurrentFacility(demographicNo)); // request.setAttribute("admissions", admissionManager.getCurrentAdmissions(Integer.valueOf(demographicNo))); // only allow bed/service programs show up.(not external program) List<Admission> currentAdmissionList = admissionManager.getCurrentAdmissionsByFacility(demographicId, facilityId); ArrayList<AdmissionForDisplay> bedServiceList = new ArrayList<AdmissionForDisplay>(); for (Admission admission1 : currentAdmissionList) { if (!"External".equalsIgnoreCase(programManager.getProgram(admission1.getProgramId()).getType())) { bedServiceList.add(new AdmissionForDisplay(admission1)); } } addRemoteAdmissions(bedServiceList, demographicId); request.setAttribute("admissions", bedServiceList); Intake mostRecentQuickIntake = genericIntakeManager .getMostRecentQuickIntakeByFacility(Integer.valueOf(demographicNo), facilityId); request.setAttribute("mostRecentQuickIntake", mostRecentQuickIntake); HealthSafety healthsafety = healthSafetyManager .getHealthSafetyByDemographic(Long.valueOf(demographicNo)); request.setAttribute("healthsafety", healthsafety); request.setAttribute("referrals", getReferralsForSummary(Integer.parseInt(demographicNo), facilityId)); // FULL OCAN Staff/Client Assessment OcanStaffForm ocanStaffForm = ocanStaffFormDao.findLatestByFacilityClient(facilityId, Integer.valueOf(demographicNo), "FULL"); if (ocanStaffForm != null) { if (ocanStaffForm.getAssessmentStatus() != null && ocanStaffForm.getAssessmentStatus().equals("In Progress")) request.setAttribute("ocanStaffForm", ocanStaffForm); } else { request.setAttribute("ocanStaffForm", null); } // SELF+CORE OCAN Staff/Client Assessment OcanStaffForm selfOcanStaffForm = ocanStaffFormDao.findLatestByFacilityClient(facilityId, Integer.valueOf(demographicNo), "SELF"); if (selfOcanStaffForm != null) { if (selfOcanStaffForm.getAssessmentStatus() != null && selfOcanStaffForm.getAssessmentStatus().equals("In Progress")) { request.setAttribute("selfOcanStaffForm", selfOcanStaffForm); } } else { request.setAttribute("selfOcanStaffForm", null); } // CORE OCAN Staff/Client Assessment OcanStaffForm coreOcanStaffForm = ocanStaffFormDao.findLatestByFacilityClient(facilityId, Integer.valueOf(demographicNo), "CORE"); if (coreOcanStaffForm != null) { if (coreOcanStaffForm.getAssessmentStatus() != null && coreOcanStaffForm.getAssessmentStatus().equals("In Progress")) { request.setAttribute("coreOcanStaffForm", coreOcanStaffForm); } } else { request.setAttribute("coreOcanStaffForm", null); } // CDS CdsClientForm cdsClientForm = cdsClientFormDao.findLatestByFacilityClient(facilityId, Integer.valueOf(demographicNo)); request.setAttribute("cdsClientForm", cdsClientForm); } /* history */ if (tabBean.getTab().equals("History")) { ArrayList<AdmissionForDisplay> allResults = new ArrayList<AdmissionForDisplay>(); List<Admission> addLocalAdmissions = admissionManager.getAdmissionsByFacility(demographicId, facilityId); for (Admission admission : addLocalAdmissions) allResults.add(new AdmissionForDisplay(admission)); addRemoteAdmissions(allResults, demographicId); request.setAttribute("admissionHistory", allResults); request.setAttribute("referralHistory", getReferralsForHistory(demographicId, facilityId)); } List<?> currentAdmissions = admissionManager.getCurrentAdmissions(Integer.valueOf(demographicNo)); for (int x = 0; x < currentAdmissions.size(); x++) { Admission admission = (Admission) currentAdmissions.get(x); if (isInDomain(admission.getProgramId().longValue(), providerManager.getProgramDomain(providerNo))) { request.setAttribute("isInProgramDomain", Boolean.TRUE); break; } } /* bed reservation view */ BedDemographic bedDemographic = bedDemographicManager .getBedDemographicByDemographic(Integer.valueOf(demographicNo), facilityId); request.setAttribute("bedDemographic", bedDemographic); RoomDemographic roomDemographic = getRoomDemographicManager() .getRoomDemographicByDemographic(Integer.valueOf(demographicNo), facilityId); if (roomDemographic != null) { Integer roomIdInt = roomDemographic.getId().getRoomId(); Room room = null; if (roomIdInt != null) { room = getRoomManager().getRoom(roomIdInt); } if (room != null) { roomDemographic.setRoom(room); } } request.setAttribute("roomDemographic", roomDemographic); if (tabBean.getTab().equals("Bed/Room Reservation")) { boolean isRefreshRoomDropDown = false; if (request.getAttribute("isRefreshRoomDropDown") != null && request.getAttribute("isRefreshRoomDropDown").equals("Y")) { isRefreshRoomDropDown = true; } else { isRefreshRoomDropDown = false; } String roomId = request.getParameter("roomId"); if (roomDemographic != null && roomId == null) { roomId = roomDemographic.getId().getRoomId().toString(); } // set bed program id Admission bedProgramAdmission = admissionManager .getCurrentBedProgramAdmission(Integer.valueOf(demographicNo)); Integer bedProgramId = null; if (bedProgramAdmission != null) { bedProgramId = (bedProgramAdmission != null) ? bedProgramAdmission.getProgramId() : null; } request.setAttribute("bedProgramId", bedProgramId); Bed reservedBed = null; if (bedDemographic == null) { bedDemographic = BedDemographic.create(Integer.valueOf(demographicNo), bedDemographicManager.getDefaultBedDemographicStatus(), providerNo); if (roomDemographic != null) { bedDemographic.setReservationStart(roomDemographic.getAssignStart()); bedDemographic.setReservationEnd(roomDemographic.getAssignEnd()); } reservedBed = null; } else { reservedBed = bedManager.getBed(bedDemographic.getBedId()); } if (isRefreshRoomDropDown) { bedDemographic.setRoomId(Integer.valueOf(roomId)); } clientForm.set("bedDemographic", bedDemographic); Room[] availableRooms = getRoomManager().getAvailableRooms(facilityId, bedProgramId, Boolean.TRUE, demographicNo); request.setAttribute("availableRooms", availableRooms); if ((isRefreshRoomDropDown && roomId != null) || (reservedBed == null && !"0".equals(roomId))) { request.setAttribute("roomId", roomId); } else if (reservedBed != null) { request.setAttribute("roomId", reservedBed.getRoomId().toString()); } else { request.setAttribute("roomId", "0"); } request.setAttribute("isAssignedBed", String.valueOf( getRoomManager().isAssignedBed((String) request.getAttribute("roomId"), availableRooms))); // retrieve an array of beds associated with this roomId Bed[] unreservedBeds = null; if (isRefreshRoomDropDown && request.getAttribute("unreservedBeds") != null) { unreservedBeds = (Bed[]) request.getAttribute("unreservedBeds"); } else if (reservedBed != null) { // unreservedBeds = bedManager.getBedsByRoomProgram(availableRooms, bedProgramId, false); unreservedBeds = bedManager.getCurrentPlusUnreservedBedsByRoom(reservedBed.getRoomId(), bedDemographic.getId().getBedId(), false); } clientForm.set("unreservedBeds", unreservedBeds); // set bed demographic statuses clientForm.set("bedDemographicStatuses", bedDemographicManager.getBedDemographicStatuses()); } /* forms */ if (tabBean.getTab().equals("Forms")) { request.setAttribute("regIntakes", genericIntakeManager.getRegIntakes(Integer.valueOf(demographicNo), facilityId)); request.setAttribute("quickIntakes", genericIntakeManager.getQuickIntakes(Integer.valueOf(demographicNo), facilityId)); // request.setAttribute("indepthIntakes", genericIntakeManager.getIndepthIntakes(Integer.valueOf(demographicNo), facilityId)); request.setAttribute("indepthIntakes", genericIntakeManager.getIntakesByType(Integer.valueOf(demographicNo), facilityId, 2)); request.setAttribute("generalIntakes", genericIntakeManager.getIntakesByType(Integer.valueOf(demographicNo), facilityId, 3)); request.setAttribute("programIntakes", genericIntakeManager.getProgramIntakes(Integer.valueOf(demographicNo), facilityId)); request.setAttribute("programsWithIntake", genericIntakeManager.getProgramsWithIntake(Integer.valueOf(demographicNo))); request.setAttribute("indepthIntakeNodes", genericIntakeManager.getIntakeNodesByType(2)); request.setAttribute("generalIntakeNodes", genericIntakeManager.getIntakeNodesByType(3)); /* survey module */ request.setAttribute("survey_list", surveyManager.getAllFormsForCurrentProviderAndCurrentFacility()); request.setAttribute("surveys", surveyManager.getFormsForCurrentProviderAndCurrentFacility(demographicNo)); /* consent forms */ int clientId = Integer.parseInt(demographicNo); List<IntegratorConsent> consentTemp = integratorConsentDao.findByFacilityAndDemographic(facilityId, clientId); TreeMap<Date, HashMap<String, Object>> consents = new TreeMap<Date, HashMap<String, Object>>( Collections.reverseOrder()); for (IntegratorConsent x : consentTemp) { HashMap<String, Object> map = new HashMap<String, Object>(); map.put("createdDate", DateFormatUtils.ISO_DATETIME_FORMAT.format(x.getCreatedDate()).replace('T', ' ')); Provider provider = providerDao.getProvider(x.getProviderNo()); map.put("provider", provider.getFormattedName()); map.put("consentId", x.getId()); consents.put(x.getCreatedDate(), map); } request.setAttribute("consents", consents.values()); // CDS forms List<CdsClientForm> cdsForms = cdsClientFormDao.findByFacilityClient(facilityId, clientId); request.setAttribute("cdsForms", cdsForms); // FULL OCAN Forms List<OcanStaffForm> ocanStaffForms = ocanStaffFormDao.findByFacilityClient(facilityId, clientId, "FULL"); request.setAttribute("ocanStaffForms", ocanStaffForms); // SELF+CORE OCAN Forms List<OcanStaffForm> selfOcanStaffForms = ocanStaffFormDao.findByFacilityClient(facilityId, clientId, "SELF"); request.setAttribute("selfOcanStaffForms", selfOcanStaffForms); // CORE OCAN Forms List<OcanStaffForm> coreOcanStaffForms = ocanStaffFormDao.findByFacilityClient(facilityId, clientId, "CORE"); request.setAttribute("coreOcanStaffForms", coreOcanStaffForms); } /* refer */ if (tabBean.getTab().equals("Refer")) { request.setAttribute("referrals", clientManager.getActiveReferrals(demographicNo, String.valueOf(facilityId))); if (loggedInInfo.currentFacility.isIntegratorEnabled()) { try { ArrayList<RemoteReferral> results = new ArrayList<RemoteReferral>(); // get local data List<RemoteReferral> remoteReferralsFromDB = remoteReferralDao .findByFacilityIdDemogprahicId(facilityId, demographicId); results.addAll(remoteReferralsFromDB); // get remote Data ReferralWs referralWs = CaisiIntegratorManager.getReferralWs(); Integer currentRemoteFacilityId = CaisiIntegratorManager.getCurrentRemoteFacility() .getIntegratorFacilityId(); List<Referral> referrals = referralWs.getLinkedReferrals(Integer.parseInt(demographicNo)); if (referrals != null) { for (Referral remoteReferral : referrals) { if (currentRemoteFacilityId.equals(remoteReferral.getSourceIntegratorFacilityId())) continue; RemoteReferral temp = new RemoteReferral(); CachedFacility cachedFacility = CaisiIntegratorManager .getRemoteFacility(remoteReferral.getDestinationIntegratorFacilityId()); temp.setReferredToFacilityName(cachedFacility.getName()); FacilityIdIntegerCompositePk pk = new FacilityIdIntegerCompositePk(); pk.setIntegratorFacilityId(remoteReferral.getDestinationIntegratorFacilityId()); pk.setCaisiItemId(remoteReferral.getDestinationCaisiProgramId()); CachedProgram cachedProgram = CaisiIntegratorManager.getRemoteProgram(pk); temp.setReferredToProgramName(cachedProgram.getName()); temp.setReferalDate(remoteReferral.getReferralDate()); Provider tempProvider = providerDao .getProvider(remoteReferral.getSourceCaisiProviderId()); temp.setReferringProviderNo(tempProvider.getFormattedName()); temp.setReasonForReferral(remoteReferral.getReasonForReferral()); temp.setPresentingProblem(remoteReferral.getPresentingProblem()); results.add(temp); } } Comparator<RemoteReferral> tempComparator = new Comparator<RemoteReferral>() { @Override public int compare(RemoteReferral o1, RemoteReferral o2) { if (o1.getReferalDate() == null && o2.getReferalDate() == null) return (0); if (o1.getReferalDate() == null) return (-1); if (o2.getReferalDate() == null) return (1); return (o1.getReferalDate().compareTo(o2.getReferalDate())); } }; Collections.sort(results, tempComparator); request.setAttribute("remoteReferrals", results); } catch (Exception e) { logger.error("Unexpected Error.", e); } } } /* service restrictions */ if (tabBean.getTab().equals("Service Restrictions")) { // request.setAttribute("serviceRestrictions", clientRestrictionManager.getActiveRestrictionsForClient(Integer.valueOf(demographicNo), new Date())); request.setAttribute("serviceRestrictions", clientRestrictionManager .getActiveRestrictionsForClient(Integer.valueOf(demographicNo), facilityId, new Date())); request.setAttribute("serviceRestrictionList", lookupManager.LoadCodeList("SRT", true, null, null)); } /* discharge */ if (tabBean.getTab().equals("Discharge")) { request.setAttribute("communityPrograms", programManager.getCommunityPrograms()); request.setAttribute("serviceAdmissions", admissionManager.getCurrentServiceProgramAdmission(Integer.valueOf(demographicNo))); request.setAttribute("temporaryAdmissions", admissionManager.getCurrentTemporaryProgramAdmission(Integer.valueOf(demographicNo))); request.setAttribute("current_bed_program", admissionManager.getCurrentBedProgramAdmission(Integer.valueOf(demographicNo))); request.setAttribute("current_community_program", admissionManager.getCurrentCommunityProgramAdmission(Integer.valueOf(demographicNo))); request.setAttribute("dischargeReasons", lookupManager.LoadCodeList("DRN", true, null, null)); request.setAttribute("dischargeReasons2", lookupManager.LoadCodeList("DR2", true, null, null)); } /* Relations */ DemographicRelationship demoRelation = new DemographicRelationship(); ArrayList<Hashtable<String, Object>> relList = demoRelation .getDemographicRelationshipsWithNamePhone(demographicNo, facilityId); List<JointAdmission> list = clientManager.getDependents(new Long(demographicNo)); JointAdmission clientsJadm = clientManager.getJointAdmission(new Long(demographicNo)); int familySize = list.size() + 1; if (familySize > 1) { request.setAttribute("groupHead", "yes"); } if (clientsJadm != null) { request.setAttribute("dependentOn", clientsJadm.getHeadClientId()); List<JointAdmission> depList = clientManager.getDependents(clientsJadm.getHeadClientId()); familySize = depList.size() + 1; Demographic headClientDemo = clientManager.getClientByDemographicNo("" + clientsJadm.getHeadClientId()); request.setAttribute("groupName", headClientDemo.getFormattedName() + " Group"); } if (relList != null && relList.size() > 0) { for (Hashtable h : relList) { String demographic = (String) h.get("demographicNo"); Long demoLong = new Long(demographic); JointAdmission demoJadm = clientManager.getJointAdmission(demoLong); // IS PERSON JOINTLY ADMITTED WITH ME, They will either have the same HeadClient or be my headClient if (clientsJadm != null && clientsJadm.getHeadClientId().longValue() == demoLong) { // they're my head client h.put("jointAdmission", "head"); } else if (demoJadm != null && clientsJadm != null && clientsJadm.getHeadClientId().longValue() == demoJadm.getHeadClientId().longValue()) { // They depend on the same person i do! h.put("jointAdmission", "dependent"); } else if (demoJadm != null && demoJadm.getHeadClientId().longValue() == new Long(demographicNo).longValue()) { // They depend on me h.put("jointAdmission", "dependent"); } // Can this person be added to my depended List if (clientsJadm == null && demoJadm == null && clientManager.getDependents(demoLong).size() == 0) { // yes if - i am not dependent on anyone // - this person is not dependent on someone // - this person is not a head of a family already h.put("dependentable", "yes"); } if (demoJadm != null) { // DEPENDS ON SOMEONE h.put("dependentOn", demoJadm.getHeadClientId()); if (demoJadm.getHeadClientId().longValue() == new Long(demographicNo).longValue()) { h.put("dependent", demoJadm.getTypeId()); } } else if (clientsJadm != null && clientsJadm.getHeadClientId().longValue() == demoLong) { // HEAD PERSON WON'T DEPEND ON ANYONE h.put("dependent", new Long(0)); } } request.setAttribute("relations", relList); request.setAttribute("relationSize", familySize); } }
From source file:eus.ixa.ixa.pipe.convert.AbsaSemEval.java
public static String absa2015Toabsa2015AnotatedWithMultipleDocClasModels(String fileName, String modelsList) { //reading the ABSA xml file SAXBuilder sax = new SAXBuilder(); XPathFactory xFactory = XPathFactory.instance(); Document doc = null;// ww w. ja va 2s . c om try { doc = sax.build(fileName); XPathExpression<Element> expr = xFactory.compile("//sentence", Filters.element()); List<Element> sentences = expr.evaluate(doc); int cantSent = 0; for (Element sent : sentences) { Element opinionsElement = sent.getChild("Opinions"); if (opinionsElement != null) { //iterating over every opinion in the opinions element List<Element> opinionList = opinionsElement.getChildren(); for (int i = opinionList.size() - 1; i >= 0; i--) { Element opinion = opinionList.get(i); opinionsElement.removeContent(opinion); } } KAFDocument kaf; final String lang = "en"; final String kafVersion = "1.0"; kaf = new KAFDocument(lang, kafVersion); final Properties properties = new Properties(); properties.setProperty("language", lang); properties.setProperty("normalize", "default"); properties.setProperty("untokenizable", "no"); properties.setProperty("hardParagraph", "no"); InputStream inputStream = new ByteArrayInputStream( sent.getChildText("text").getBytes(Charset.forName("UTF-8"))); BufferedReader breader = new BufferedReader(new InputStreamReader(inputStream, "UTF-8")); final eus.ixa.ixa.pipe.tok.Annotate annotator = new eus.ixa.ixa.pipe.tok.Annotate(breader, properties); annotator.tokenizeToKAF(kaf); //System.err.println(kaf.toString()); BufferedReader reader = new BufferedReader(new FileReader(modelsList)); int lines = 0; while (reader.readLine() != null) lines++; reader.close(); boolean Binary = false; if (lines > 1) Binary = true; File file = new File(modelsList); FileReader fileReader = new FileReader(file); BufferedReader bufferedReader = new BufferedReader(fileReader); String line; while ((line = bufferedReader.readLine()) != null) { //System.err.println("-" + line + "-" + kaf.getLang()); /* File fileTmp = new File(line); String fileTmp0 = Paths.get(".").toAbsolutePath().normalize().toString()+"/tmpModels/"+line+"."+cantSent; File fileTmp2 = new File(fileTmp0); Files.copy(fileTmp.toPath(), fileTmp2.toPath()); */ Properties oteProperties = new Properties(); oteProperties.setProperty("model", line); oteProperties.setProperty("language", kaf.getLang()); oteProperties.setProperty("clearFeatures", "no"); //eus.ixa.ixa.pipe.doc.Annotate docClassifier = new eus.ixa.ixa.pipe.doc.Annotate(oteProperties); //docClassifier.classify(kaf); StatisticalDocumentClassifier docClassifier = new StatisticalDocumentClassifier(oteProperties); String source = oteProperties.getProperty("model"); List<List<WF>> sentences0 = kaf.getSentences(); List<String> tokens = new ArrayList<>(); for (List<WF> sentence : sentences0) { for (WF wf : sentence) { tokens.add(wf.getForm()); } } String[] document = tokens.toArray(new String[tokens.size()]); String label = docClassifier.classify(document); //Topic topic = kaf.newTopic(label); double[] probs = docClassifier.classifyProb(document); //topic.setConfidence((float) probs[0]); //topic.setSource(Paths.get(source).getFileName().toString()); //topic.setMethod("ixa-pipe-doc"); SortedMap<Double, String> map = new TreeMap<Double, String>(Collections.reverseOrder()); //System.err.println("RESULTADO: " + docClassifier.getClassifierME().getAllLabels(probs)); System.err.println("SENTENCE:" + sent.getChildText("text")); Double sum = 0.0; for (int i = 0; i < probs.length; i++) { //System.err.println("RESULTADO: " + docClassifier.getClassifierME().getLabel(i) + "\t\t" + probs[i]); sum += probs[i]; map.put(probs[i], docClassifier.getClassifierME().getLabel(i)); //System.err.println("\t\tPUT: " + probs[i] + " -- " + docClassifier.getClassifierME().getLabel(i)); //Topic topic = kaf.newTopic(docClassifier.getClassifierME().getLabel(i)); //topic.setConfidence((float) probs[i]); //topic.setSource(Paths.get(source).getFileName().toString()); //topic.setMethod("ixa-pipe-doc"); } sum = sum / probs.length; System.err.println("MEDIA: " + sum); Set<Double> Keys = map.keySet(); boolean first = true; for (Double key : Keys) { System.err.println("\t\t" + key + "\t" + map.get(key)); if (Binary) { if (key >= 0.40) { Topic topic = kaf.newTopic(map.get(key)); topic.setConfidence((float) key.floatValue()); topic.setSource(Paths.get(source).getFileName().toString()); topic.setMethod("ixa-pipe-doc"); } break; } else { if (first) { first = false; /*if (key > 0.65 || (key < 0.20 && key > 0.10)) { Topic topic = kaf.newTopic(map.get(key)); topic.setConfidence((float) key.floatValue()); topic.setSource(Paths.get(source).getFileName().toString()); topic.setMethod("ixa-pipe-doc"); //break; } else */ if (key < 0.10) { break; } else { Topic topic = kaf.newTopic(map.get(key)); topic.setConfidence((float) key.floatValue()); topic.setSource(Paths.get(source).getFileName().toString()); topic.setMethod("ixa-pipe-doc"); } } else if (key > 0.25) { Topic topic = kaf.newTopic(map.get(key)); topic.setConfidence((float) key.floatValue()); topic.setSource(Paths.get(source).getFileName().toString()); topic.setMethod("ixa-pipe-doc"); } } } //Files.delete(fileTmp2.toPath()); } fileReader.close(); //System.err.println(kaf.toString()); cantSent++; System.err.println("IsBinary: " + Binary); List<Topic> topicList = kaf.getTopics(); for (Topic topic : topicList) { //System.err.println(topic.getTopicValue()); if (!topic.getTopicValue().equals("NO")) { Element opinionElem = new Element("Opinion"); opinionElem.setAttribute("target", "na"); opinionElem.setAttribute("category", topic.getTopicValue()); //TODO we still do not have polarity here opinionElem.setAttribute("polarity", String.valueOf(topic.getConfidence())); opinionElem.setAttribute("from", "0"); opinionElem.setAttribute("to", "0"); opinionsElement.addContent(opinionElem); } } } //end of sentence } catch (JDOMException | IOException e) { e.printStackTrace(); } XMLOutputter xmlOutput = new XMLOutputter(); Format format = Format.getPrettyFormat(); xmlOutput.setFormat(format); return xmlOutput.outputString(doc); }
From source file:snpviewer.SnpViewer.java
public void removeSamples(ActionEvent event) { FXMLLoader loader = new FXMLLoader(getClass().getResource("RemoveSamplesInterface.fxml")); try {//from w w w . j a v a 2s . c o m Pane pane = (Pane) loader.load(); RemoveSamplesInterfaceController removeController = (RemoveSamplesInterfaceController) loader .getController(); Scene scene = new Scene(pane); Stage stage = new Stage(); stage.setScene(scene); scene.getStylesheets().add(SnpViewer.class.getResource("SnpViewerStyleSheet.css").toExternalForm()); stage.getIcons().add(new Image(this.getClass().getResourceAsStream("icon.png"))); stage.setTitle("Remove Samples"); removeController.setSamples(affObserve, unObserve); stage.initModality(Modality.APPLICATION_MODAL); stage.showAndWait(); List<Integer> indicesToRemove = removeController.getSamplesToRemove(); //System.out.println(indicesToRemove.toString()); if (indicesToRemove.isEmpty()) { return; } ArrayList<Integer> affsToRemove = new ArrayList<>(); ArrayList<Integer> unsToRemove = new ArrayList<>(); for (Integer r : indicesToRemove) { if (r < affObserve.size()) {//index corresponds to affFiles affsToRemove.add(r); } else {//index corresponds to unFiles r -= affObserve.size(); unsToRemove.add(r); } } ArrayList<File> dirsToDelete = new ArrayList<>(); if (!affsToRemove.isEmpty()) { Collections.sort(affsToRemove, Collections.reverseOrder()); for (int i : affsToRemove) { dirsToDelete.add(affObserve.get(i).getOutputDirectory()); affObserve.remove(i); } } if (!unsToRemove.isEmpty()) { Collections.sort(unsToRemove, Collections.reverseOrder()); for (int i : unsToRemove) { dirsToDelete.add(unObserve.get(i).getOutputDirectory()); unObserve.remove(i); } } if (affObserve.isEmpty() && unObserve.isEmpty()) { resetView(); } else { refreshView(null, false); } saveProject(); for (File dir : dirsToDelete) { FileUtils.deleteDirectory(dir); } } catch (Exception ex) { Dialogs.showErrorDialog(null, "Sample removal failed - please see " + "details for stack trace and report this error.", "Remove Samples Failed!", "SnpViewer", ex); } }
From source file:snpviewer.SnpViewer.java
public void addInputFiles(final boolean isAffected) { setProgressMode(true);/* w ww.j ava 2 s .c o m*/ FileChooser fileChooser = new FileChooser(); fileChooser.getExtensionFilters() .add(new FileChooser.ExtensionFilter("Text Files", "*.txt", "AutoSNPa Files", "*.xls")); fileChooser.setTitle("Select one or more input (birdseed) files"); List<File> chosen = fileChooser.showOpenMultipleDialog(null); if (chosen == null) { setProgressMode(false); return; } cancelButton.setOnAction(new EventHandler<ActionEvent>() { @Override public void handle(ActionEvent actionEvent) { setProgressMode(false); }; }); ArrayList<File> inputFiles = new ArrayList<>(); inputFiles.addAll(chosen); ArrayList<File> duplicates = new ArrayList<>(); ArrayList<Integer> indicesToRemove = new ArrayList<>(); for (int i = 0; i < inputFiles.size(); i++) { for (SnpFile s : affFiles) { if (inputFiles.get(i).getName().equals(s.getInputFileName())) { duplicates.add(inputFiles.get(i)); indicesToRemove.add(i); } } for (SnpFile s : unFiles) { if (inputFiles.get(i).getName().equals(s.getInputFileName())) { duplicates.add(inputFiles.get(i)); indicesToRemove.add(i); } } } if (!duplicates.isEmpty()) { StringBuilder duplicateString = new StringBuilder(); for (File d : duplicates) { duplicateString.append(d.getName()).append("\n"); } Collections.sort(indicesToRemove, Collections.reverseOrder()); for (int i : indicesToRemove) { inputFiles.remove(i); } DialogResponse response = Dialogs.showWarningDialog(null, "This project already includes the following file(s) with " + "matching names to the file(s) you have just tried to add:" + "\n\n" + duplicateString + "\nIf you want to change the affected " + "status of a file please remove it first. Any remaining " + "(non-duplicate) files will be processed if you click 'OK'.", "Duplicate Input File", "SnpViewer", Dialogs.DialogOptions.OK_CANCEL); if (!response.equals(DialogResponse.OK)) { setProgressMode(false); return; } } if (inputFiles.isEmpty()) { setProgressMode(false); return; } final Iterator iter = inputFiles.iterator(); File input = (File) iter.next(); int fileCounter = 1; if (snpViewSaveDirectory == null) { Dialogs.showWarningDialog(null, "Before processing input files " + "please create a project", "Create Project", "SNP Viewer"); boolean success = startNewProject(); if (!success) { setProgressMode(false); return; } } addInputFilesWithIterator(isAffected, input, iter, fileCounter, inputFiles.size()); }
From source file:org.apache.jackrabbit.oak.plugins.index.lucene.LucenePropertyIndexTest.java
private static List<String> getSortedPaths(List<Tuple> tuples, OrderDirection dir) { if (OrderDirection.DESC == dir) { Collections.sort(tuples, Collections.reverseOrder()); } else {//from w ww. j a v a 2 s. co m Collections.sort(tuples); } List<String> paths = Lists.newArrayListWithCapacity(tuples.size()); for (Tuple t : tuples) { paths.add(t.path); } return paths; }
From source file:com.krawler.spring.iphone.iphoneController.java
private JSONArray getData(String[] arrName, Float[] value, int cnt) { JSONArray jarr = null;/*w ww.ja v a 2s.co m*/ try { jarr = new JSONArray(); Float[] vArr = new Float[cnt]; float divisor = 1; int temp = cnt; while (temp > 0) { temp = temp / 10; divisor = divisor * 10; } String[] nArr = new String[cnt]; for (int i = 0; i < cnt; i++) { int ind = value[i].toString().indexOf("."); float cvalue = Float.parseFloat(value[i].toString().substring(0, ind)); float lval = (float) (cvalue + (float) (i / divisor)); vArr[i] = lval; nArr[i] = arrName[i]; } Arrays.sort(vArr, Collections.reverseOrder()); int otherValue = 0; for (int i = 0; i < cnt; i++) { JSONObject jobj = new JSONObject(); float cval = Float.parseFloat(vArr[i].toString().substring(0, vArr[i].toString().indexOf("."))); int index = Math.round((vArr[i] - cval) * divisor); int cvalue = (int) cval; if (cnt == 10) { jobj.put("name", nArr[index]); jobj.put("value", cvalue); jarr.put(jobj); } else if (i < 9) { jobj.put("name", nArr[index]); jobj.put("value", cvalue); jarr.put(jobj); } else { otherValue = otherValue + cvalue; if (i == (cnt - 1)) { jobj.put("name", "Others"); jobj.put("value", otherValue); jarr.put(jobj); } } } } catch (Exception ex) { logger.warn(ex.getMessage(), ex); String exname = ex.toString(); } return jarr; }
From source file:app.RunApp.java
/** * Select n top co-ocurrence labels/*w ww . ja v a2s.c o m*/ * * @param n Number of labels to select * @param selectInTable Indicates if the rows are selected in the table * @return List with the names of the selected labels */ public ArrayList<String> selectTopCoocurrenceLabels(int n, boolean selectInTable) { ArrayList<String> pairsString = new ArrayList<>(); ArrayList<LabelsPairValue> pairs = new ArrayList<>(); for (int i = 0; i < coocurrenceCoefficients.length; i++) { for (int j = 0; j < coocurrenceCoefficients.length; j++) { if (coocurrenceCoefficients[i][j] >= 0) { pairs.add(new LabelsPairValue(i, j, coocurrenceCoefficients[i][j])); } } } Collections.sort(pairs, Collections.reverseOrder()); int numLabels = n; int currentSelectedLabels = 0; Vector<Integer> selectedLabels = new Vector<>(); do { if (!selectedLabels.contains(pairs.get(0).label1)) { selectedLabels.add(pairs.get(0).label1); currentSelectedLabels++; } if (currentSelectedLabels < numLabels) { if (!selectedLabels.contains(pairs.get(0).label2)) { selectedLabels.add(pairs.get(0).label2); currentSelectedLabels++; } } pairs.remove(pairs.get(0)); } while ((pairs.size() > 0) && (currentSelectedLabels < numLabels)); String s = new String(); for (int i = 0; i < selectedLabels.size(); i++) { s = jTableCoocurrences.getColumnName(selectedLabels.get(i)); if (s != null) { pairsString.add(s); } } if (selectInTable) { tableCoOcurrenceLeft.clearSelection(); String labelName; for (int i = 0; i < selectedLabels.size(); i++) { labelName = dataset.getLabelNames()[selectedLabels.get(i)]; for (int r = 0; r < tableCoOcurrenceLeft.getRowCount(); r++) { if (tableCoOcurrenceLeft.getValueAt(r, 0).equals(labelName)) { tableCoOcurrenceLeft.addRowSelectionInterval(r, r); } } } } return pairsString; }
From source file:app.RunApp.java
/** * Select n top heatmap labels//from ww w .ja v a2 s .c o m * * @param n Number of labels to select * @param selectInTable Indicates if the rows are selected in the table * @return List with the names of the selected labels */ public ArrayList<String> selectTopHeatmapLabels(int n, boolean selectInTable) { ArrayList<String> pairsString = new ArrayList<>(); ArrayList<LabelsPairValue> pairs = new ArrayList<>(); for (int i = 0; i < heatmapCoefficients.length; i++) { for (int j = 0; j < heatmapCoefficients.length; j++) { if (heatmapCoefficients[i][j] >= 0) { pairs.add(new LabelsPairValue(i, j, heatmapCoefficients[i][j])); } } } Collections.sort(pairs, Collections.reverseOrder()); int numLabels = n; int currentSelectedLabels = 0; Vector<Integer> selectedLabels = new Vector<>(); do { if (!selectedLabels.contains(pairs.get(0).label1)) { selectedLabels.add(pairs.get(0).label1); currentSelectedLabels++; } if (currentSelectedLabels < numLabels) { if (!selectedLabels.contains(pairs.get(0).label2)) { selectedLabels.add(pairs.get(0).label2); currentSelectedLabels++; } } pairs.remove(pairs.get(0)); } while ((pairs.size() > 0) && (currentSelectedLabels < numLabels)); String s; for (int i = 0; i < selectedLabels.size(); i++) { s = jTableHeatmap.getColumnName(selectedLabels.get(i)); if (s != null) { pairsString.add(s); } } if (selectInTable) { tableHeatmapLeft.clearSelection(); String labelName; for (int i = 0; i < selectedLabels.size(); i++) { //Get label name labelName = dataset.getLabelNames()[selectedLabels.get(i)]; for (int r = 0; r < tableHeatmapLeft.getRowCount(); r++) { if (tableHeatmapLeft.getValueAt(r, 0).equals(labelName)) { tableHeatmapLeft.addRowSelectionInterval(r, r); } } } } return pairsString; }