Example usage for java.util Collection toString

Introduction

In this page you can find the example usage for java.util Collection toString.

Prototype

public String toString() 

Source Link

Document

Returns a string representation of the object.

Usage

From source file:ubic.BAMSandAllen.MatrixPairs.ConnectivityLiteratureMatrixPair.java

public ConnectivityLiteratureMatrixPair(Direction direction) throws Exception {
    super(Nomenclature.BAMS);

    // allenCatalog = new StructureCatalogLoader();
    squareConnectivity = false;/*from w  ww.j ava  2s . c o  m*/
    this.direction = direction;
    BrainRegionClassSelector selector = new BrainRegionClassSelector();

    if (squareConnectivity && direction.equals(Direction.APPENDED)) {
        throw new RuntimeException("Error square matrix incompatable with appended connectivity");
    }
    StructureCatalogAnalyze forMatrix = new StructureCatalogAnalyze(selector);
    // could be an option here for propigated or non-propigated connection matrix
    forMatrix.readModel(SetupParameters.getDataFolder() + "Propigated.rdf");

    DoubleMatrix<String, String> dataMatrix = forMatrix.makeConnectionMatrix(direction);

    matrixA = new ABAMSDataMatrix(dataMatrix, "Connectivity", new CorrelationAdjacency(dataMatrix));

    // get Allen leaf regions and convert them to BAMS regions
    StructureCatalogLoader loader = new StructureCatalogLoader();
    Collection<String> leafsABA = loader.getLeafs();
    Collection<String> leafsBAMS = new HashSet<String>();
    for (String leafABA : leafsABA) {
        leafsBAMS.addAll(loader.getBAMSMappedRegions(leafABA));
    }

    // remove the non leaf nodes
    Collection<String> nonLeafs = (Collection<String>) Util.subtract(matrixA.getColNames(), leafsBAMS);
    log.info("Removing " + nonLeafs.size() + " regions " + nonLeafs.toString());
    matrixA = matrixA.removeColumns(nonLeafs);

    // log.info( "Removing bed Nuclei Stria" );
    // removeBedNucleiStria();

    // matrixA = matrixA.removeRows( Util.findZeroRows( matrixA ) );

    matrixA = matrixA.removeZeroColumns();
    matrixB = matrixB.removeZeroColumns();

    log.info("got Matrix A - connections");
}

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From source file:org.apache.james.smtpserver.SendMailHandler.java

/**
 * Adds header to the message//from   w ww.j  av  a2  s.  com
 *
 */
public HookResult onMessage(SMTPSession session, Mail mail) {

    session.getLogger().debug("sending mail");

    try {
        queue.enQueue(mail);
        Collection<MailAddress> theRecipients = mail.getRecipients();
        String recipientString = "";
        if (theRecipients != null) {
            recipientString = theRecipients.toString();
        }
        if (session.getLogger().isInfoEnabled()) {
            String infoBuffer = "Successfully spooled mail " + mail.getName() + " from " + mail.getSender()
                    + " on " + session.getRemoteAddress().getAddress().toString() + " for " + recipientString;
            session.getLogger().info(infoBuffer.toString());
        }
    } catch (MessagingException me) {
        session.getLogger().error("Unknown error occurred while processing DATA.", me);
        return new HookResult(HookReturnCode.DENYSOFT,
                DSNStatus.getStatus(DSNStatus.TRANSIENT, DSNStatus.UNDEFINED_STATUS)
                        + " Error processing message.");
    }

    return new HookResult(HookReturnCode.OK,
            DSNStatus.getStatus(DSNStatus.SUCCESS, DSNStatus.CONTENT_OTHER) + " Message received");

}

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From source file:org.codehaus.mojo.latex.LaTeXMojo.java

private boolean requiresBuilding(File dir, File pdfFile) throws IOException {
    Collection texFiles = FileUtils.listFiles(dir, new String[] { "tex", "bib" }, true);
    getLog().info(texFiles.toString());
    if (pdfFile.exists()) {
        boolean upToDate = true;
        Iterator it = texFiles.iterator();
        while (it.hasNext() && upToDate) {
            File file = (File) it.next();
            if (FileUtils.isFileNewer(file, pdfFile)) {
                if (getLog().isInfoEnabled()) {
                    getLog().info("Changes detected on " + file.getAbsolutePath());
                }//from  w  w  w  .jav  a 2s  .c om
                return true;
            }
            if (getLog().isInfoEnabled()) {
                getLog().info("No change detected on " + file.getAbsolutePath());
            }
        }
        if (getLog().isInfoEnabled()) {
            getLog().info("Skipping: no LaTeX changes detected in " + dir.getCanonicalPath());
        }
        return false;
    } else {
        return true;
    }
}

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From source file:org.apache.solr.handler.XmlUpdateRequestHandlerTest.java

@Test
public void testReadDoc() throws Exception {
    String xml = "<doc boost=\"5.5\">" + "  <field name=\"id\" boost=\"2.2\">12345</field>"
            + "  <field name=\"name\">kitten</field>" + "  <field name=\"cat\" boost=\"3\">aaa</field>"
            + "  <field name=\"cat\" boost=\"4\">bbb</field>" + "  <field name=\"cat\" boost=\"5\">bbb</field>"
            + "  <field name=\"ab\">a&amp;b</field>" + "</doc>";

    XMLStreamReader parser = inputFactory.createXMLStreamReader(new StringReader(xml));
    parser.next(); // read the START document...
    //null for the processor is all right here
    XMLLoader loader = new XMLLoader();
    SolrInputDocument doc = loader.readDoc(parser);

    // Read boosts
    assertEquals(5.5f, doc.getDocumentBoost(), 0.1);
    assertEquals(1.0f, doc.getField("name").getBoost(), 0.1);
    assertEquals(2.2f, doc.getField("id").getBoost(), 0.1);
    // Boost is the product of each value
    assertEquals((3 * 4 * 5.0f), doc.getField("cat").getBoost(), 0.1);

    // Read values
    assertEquals("12345", doc.getField("id").getValue());
    assertEquals("kitten", doc.getField("name").getValue());
    assertEquals("a&b", doc.getField("ab").getValue()); // read something with escaped characters

    Collection<Object> out = doc.getField("cat").getValues();
    assertEquals(3, out.size());// w ww  . ja  v a 2 s  .com
    assertEquals("[aaa, bbb, bbb]", out.toString());
}

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From source file:org.apache.atlas.repository.graph.GraphHelper.java

public static String vertexString(final AtlasVertex vertex) {
    StringBuilder properties = new StringBuilder();
    for (String propertyKey : vertex.getPropertyKeys()) {
        Collection<?> propertyValues = vertex.getPropertyValues(propertyKey, Object.class);
        properties.append(propertyKey).append("=").append(propertyValues.toString()).append(", ");
    }/*from w  w w .j  a v a2s  . c  o m*/

    return "v[" + vertex.getIdForDisplay() + "], Properties[" + properties + "]";
}

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From source file:org.apache.solr.client.solrj.request.TestCoreAdmin.java

@Test
public void testValidCoreRename() throws Exception {
    Collection<String> names = cores.getAllCoreNames();
    assertFalse(names.toString(), names.contains("coreRenamed"));
    assertTrue(names.toString(), names.contains("core1"));
    CoreAdminRequest.renameCore("core1", "coreRenamed", getSolrAdmin());
    names = cores.getAllCoreNames();//from   w w w.jav  a2 s  .  co  m
    assertTrue(names.toString(), names.contains("coreRenamed"));
    assertFalse(names.toString(), names.contains("core1"));
    // rename it back
    CoreAdminRequest.renameCore("coreRenamed", "core1", getSolrAdmin());
    names = cores.getAllCoreNames();
    assertFalse(names.toString(), names.contains("coreRenamed"));
    assertTrue(names.toString(), names.contains("core1"));
}

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From source file:org.grails.datastore.gorm.neo4j.Neo4jMappingContext.java

/**
 * Finds an entity for the statically mapped set of labels
 *
 * @param labels The labels/*w  w w . j a  v a2s  .  c  o  m*/
 * @return The entity
 * @throws NonPersistentTypeException if no entity is found
 */
public GraphPersistentEntity findPersistentEntityForLabels(Collection<String> labels) {
    final GraphPersistentEntity entity = entitiesByLabel.get(labels);
    if (entity != null) {
        return entity;
    }
    throw new NonPersistentTypeException(labels.toString());
}

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From source file:com.fatwire.dta.sscrawler.reporting.reporters.SameContentPageletReporter.java

public synchronized void endCollecting() {
    report.startReport();//from  www  .j  a v  a2 s.com
    report.addHeader("group", "pagename", "suspected parameters", "uri");

    for (final Entry<String, List<QueryString>> e : map.entrySet()) {
        final List<QueryString> l = e.getValue();
        if (l.size() > 1) {
            group++;
            final Collection<String> suspects = getMultiValuedKeys(l);
            for (final QueryString qs : l) {
                report.addRow(Integer.toString(group), qs.getParameters().get(HelperStrings.PAGENAME),
                        suspects.toString(), qs.toString());
            }
        }
    }
    report.finishReport();
}

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From source file:test.NonRedundantBackgroundKnowledgeTest.java

@Test
public void testToConstantVariable() {
    RelationalPredicate pred = StateSpec.toRelationalPredicate("(above ?X ?Y)");
    Collection<RelationalArgument> variables = new HashSet<RelationalArgument>();
    String result = sut_.toConstantFormVariable(pred, variables);
    assertEquals(result, "(above ?X&:(<> ?X free) ?Y&:(<> ?Y free ?X))");
    assertEquals(variables.toString(), variables.size(), 2);
    assertTrue(variables.contains(new RelationalArgument("?X")));
    assertTrue(variables.contains(new RelationalArgument("?Y")));

    // Same variables, so no need to test them
    pred = StateSpec.toRelationalPredicate("(on ?X ?)");
    result = sut_.toConstantFormVariable(pred, variables);
    assertEquals(result, "(on ?X free)");
    assertEquals(variables.toString(), variables.size(), 2);
    assertTrue(variables.contains(new RelationalArgument("?X")));
    assertTrue(variables.contains(new RelationalArgument("?Y")));
}

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From source file:com.persistent.cloudninja.controller.AuthFilterUtils.java

/**
 * //w  w  w  .  ja v  a  2  s  .c  o  m
 * @param cloudNinjaUser
 * @param cookieName
 * @return
 */
public static Cookie createNewCookieForACSAuthenticatedUser(CloudNinjaUser cloudNinjaUser, String cookieName) {
    Collection<GrantedAuthority> authorities = cloudNinjaUser.getUser().getAuthorities();
    if (authorities != null) {
        GrantedAuthority[] grantedAuthorities = new GrantedAuthority[authorities.size()];
        authorities.toArray(grantedAuthorities);
    }

    StringBuffer sb = new StringBuffer(5);

    sb.append(CloudNinjaConstants.COOKIE_TENANTID_PREFIX)
            .append(CloudNinjaConstants.COOKIE_FIELD_AND_VALUE_SEPARATOR).append(cloudNinjaUser.getTenantId())
            .append(CloudNinjaConstants.COOKIE_FIELDS_SEPARATOR);

    sb.append(CloudNinjaConstants.COOKIE_USERNAME_PREFIX)
            .append(CloudNinjaConstants.COOKIE_FIELD_AND_VALUE_SEPARATOR)
            .append(cloudNinjaUser.getUser().getUsername()).append(CloudNinjaConstants.COOKIE_FIELDS_SEPARATOR);

    sb.append(CloudNinjaConstants.COOKIE_AUTHORITIES_PREFIX)
            .append(CloudNinjaConstants.COOKIE_FIELD_AND_VALUE_SEPARATOR).append(authorities.toString())
            .append(CloudNinjaConstants.COOKIE_FIELDS_SEPARATOR);

    sb.append(CloudNinjaConstants.COOKIE_AUTH_SESSION_START_PREFIX)
            .append(CloudNinjaConstants.COOKIE_FIELD_AND_VALUE_SEPARATOR)
            .append(cloudNinjaUser.getAuthenticatedSessionStartTime().getTime())
            .append(CloudNinjaConstants.COOKIE_FIELDS_SEPARATOR);

    sb.append(CloudNinjaConstants.COOKIE_AUTH_SESSION_END_PREFIX)
            .append(CloudNinjaConstants.COOKIE_FIELD_AND_VALUE_SEPARATOR)
            .append(cloudNinjaUser.getAuthenticatedSessionExpiryTime().getTime())
            .append(CloudNinjaConstants.COOKIE_FIELDS_SEPARATOR);

    String newCookieValue = sb.toString();

    Cookie newCookie = new Cookie(cookieName, newCookieValue);
    newCookie.setPath("/");
    return newCookie;
}

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