List of usage examples for java.util ArrayList remove
public boolean remove(Object o)
From source file:com.krawler.spring.hrms.rec.job.hrmsRecJobController.java
public JSONObject getJobApplicationsJson(HttpServletRequest request, HttpServletResponse response) { KwlReturnObject result = null, recruitresult = null; JSONObject jobj = new JSONObject(); JSONArray jarr = new JSONArray(); String hql = ""; int count = 0; boolean isadmin = false; HashMap<String, Object> requestParams = new HashMap<String, Object>(); int type = 0; try {// w w w. j ava 2 s. c o m DateFormat df = sessionHandlerImplObj.getDateFormatter(request); String Searchjson = request.getParameter("searchJson"); List lst = null; List lst1 = null; String cmpid = sessionHandlerImplObj.getCompanyid(request); String userid = sessionHandlerImplObj.getUserid(request); requestParams.clear(); requestParams.put("userid", userid); if (hrmsCommonDAOObj.isAdmin(userid)) { isadmin = true; } ArrayList params = new ArrayList(); ArrayList filter_name = new ArrayList(); ArrayList order_by = new ArrayList(); ArrayList order_type = new ArrayList(); String ss = request.getParameter("ss"); int statusid = StringUtil.isNullOrEmpty(request.getParameter("statusid")) ? -1 : Integer.parseInt(request.getParameter("statusid")); String tempstatus = statusid == 1 ? "Pending" : (statusid == 2 ? "Shortlisted" : (statusid == 3 ? "In Process" : (statusid == 4 ? "On Hold" : ""))); if (StringUtil.isNullOrEmpty(request.getParameter("userid"))) { int emptype = Integer.parseInt(request.getParameter("employeetype")); type = emptype; int gridst = Integer.parseInt(request.getParameter("gridst")); String[] searchArray = null; String[] searchArray1 = null; if (emptype == 1) {//Internal searchArray = new String[] { "employee.firstName", "employee.lastName", "position.jobid", "position.departmentid.value" }; params.add(0); filter_name.add("employee.deleteflag"); } else if (emptype == 2) { // else added to execute only one condition emptype = 1; searchArray = new String[] { "employee.firstName", "employee.lastName", "position.jobid", "position.departmentid.value" }; searchArray1 = new String[] { "configjobapplicant.col1", "configjobapplicant.col2", "position.jobid", "position.departmentid.value" }; params.add(0); filter_name.add("employee.deleteflag"); params.add(false); filter_name.add("configjobapplicant.deleted"); } else {//External searchArray = new String[] { "configjobapplicant.col1", "configjobapplicant.col2", "position.jobid", "position.departmentid.value" }; params.add(false); filter_name.add("configjobapplicant.deleted"); } if (emptype == 0) { emptype = 4; //configjobapplicant=4 reset to 0 } if (StringUtil.isNullOrEmpty(request.getParameter("status"))) { params.add(gridst); params.add(cmpid); params.add(0); params.add(emptype); //params.add(false); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("employeetype"); //filter_name.add("configjobapplicant.deleted"); } else { if (!tempstatus.equals("")) { params.add(gridst); params.add(cmpid); params.add(0); params.add(tempstatus); params.add(emptype); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("status"); filter_name.add("employeetype"); } else { params.add(gridst); params.add(cmpid); params.add(0); params.add(emptype); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("employeetype"); } } if (!isadmin) { params.add(userid); filter_name.add("position.manager.userID"); } order_by.add("position.positionid"); order_type.add("asc"); requestParams.put("filter_names", filter_name); requestParams.put("filter_values", params); ArrayList params1 = new ArrayList(params); ArrayList filter_name1 = new ArrayList(filter_name); if (filter_name1.contains("employee.deleteflag")) { params1.remove(filter_name1.indexOf("employee.deleteflag")); filter_name1.remove("employee.deleteflag"); } if (filter_name.contains("configjobapplicant.deleted") && !(emptype == 4)) { params.remove(filter_name.indexOf("configjobapplicant.deleted")); filter_name.remove("configjobapplicant.deleted"); } requestParams.put("filter_names1", filter_name1); requestParams.put("filter_values1", params1); requestParams.put("order_by", order_by); requestParams.put("order_type", order_type); requestParams.put("ss", request.getParameter("ss")); requestParams.put("searchcol", searchArray); requestParams.put("searchcol1", searchArray1); requestParams.put("allflag", true); if (!StringUtil.isNullOrEmpty(Searchjson)) { getMyAdvanceSearchparams1(Searchjson, filter_name, (type != 2 ? type : 1)); insertParamAdvanceSearchString1(params, Searchjson, type); getMyAdvanceSearchparams1(Searchjson, filter_name1, (type != 2 ? type : 0)); insertParamAdvanceSearchString1(params1, Searchjson, type); } StringUtil.checkpaging(requestParams, request); result = hrmsRecJobDAOObj.getPositionstatus(requestParams); } else { params.add(request.getParameter("userid")); params.add(cmpid); params.add(0); params.add(false); filter_name.add("configjobapplicant.id"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("configjobapplicant.deleted"); order_by.add("position.positionid"); order_type.add("asc"); requestParams.put("filter_names", filter_name); requestParams.put("filter_values", params); requestParams.put("order_by", order_by); requestParams.put("order_type", order_type); requestParams.put("ss", request.getParameter("ss")); requestParams.put("searchcol", new String[] { "position.jobid", "position.position.value" }); requestParams.put("allflag", true); if (!StringUtil.isNullOrEmpty(Searchjson)) { getMyAdvanceSearchparams1(Searchjson, filter_name, type); insertParamAdvanceSearchString1(params, Searchjson, type); } StringUtil.checkpaging(requestParams, request); result = hrmsRecJobDAOObj.getPositionstatus(requestParams); } Allapplications allapps = null; count = result.getRecordTotalCount(); lst = result.getEntityList(); for (int ctr = 0; ctr < lst.size(); ctr++) { // if(isadmin){ allapps = (Allapplications) lst.get(ctr); // }else{ // Recruiter rec=(Recruiter) lst.get(ctr); // allapps = rec.getAllapplication(); // } JSONObject tmpObj = new JSONObject(); tmpObj.put("rejectedbefore", (allapps.getRejectedbefore() == 0) ? "No" : "Yes"); tmpObj.put("id", ""); tmpObj.put("posid", allapps.getPosition().getPositionid()); tmpObj.put("designationid", allapps.getPosition().getPosition().getId()); tmpObj.put("departmentid", allapps.getPosition().getDepartmentid().getId()); tmpObj.put("department", allapps.getPosition().getDepartmentid().getValue()); tmpObj.put("Department", allapps.getPosition().getDepartmentid().getValue()); tmpObj.put("designation", allapps.getPosition().getPosition().getValue()); tmpObj.put("jobpositionid", allapps.getPosition().getJobid()); tmpObj.put("jobid", allapps.getPosition().getJobid()); tmpObj.put("JobId", allapps.getPosition().getJobid()); tmpObj.put("vacancy", allapps.getPosition().getNoofpos()); tmpObj.put("filled", allapps.getPosition().getPositionsfilled()); tmpObj.put("jname", allapps.getPosition().getPosition().getValue()); tmpObj.put("applydt", df.format(allapps.getApplydate())); tmpObj.put("interviewdt", (allapps.getInterviewdate() == null ? "" : df.format(allapps.getInterviewdate()))); tmpObj.put("joiningdate", (allapps.getJoiningdate() == null ? "" : df.format(allapps.getJoiningdate()))); tmpObj.put("status", allapps.getStatus()); tmpObj.put("jobDetails", allapps.getPosition().getDetails()); if (allapps.getConfigjobapplicant() != null) { tmpObj.put("apcntid", allapps.getConfigjobapplicant().getId()); tmpObj.put("cname", allapps.getConfigjobapplicant().getCol1() + " " + allapps.getConfigjobapplicant().getCol2()); tmpObj.put("email", allapps.getConfigjobapplicant().getCol3()); tmpObj.put("fname", allapps.getConfigjobapplicant().getCol1()); tmpObj.put("lname", allapps.getConfigjobapplicant().getCol2()); tmpObj.put("contact", allapps.getConfigjobapplicant().getCol4() != null ? allapps.getConfigjobapplicant().getCol4() : ""); tmpObj.put("addr", allapps.getConfigjobapplicant().getCol6() != null ? allapps.getConfigjobapplicant().getCol6() : ""); tmpObj.put("employeetype", 0); if (!StringUtil.isNullOrEmpty(allapps.getConfigjobapplicant().getCol5())) { tmpObj.put("docid", allapps.getConfigjobapplicant().getCol5()); } // getdocsbyuser(request,allapps.getConfigjobapplicant().getId(),tmpObj); } else { tmpObj.put("apcntid", allapps.getEmployee().getUserID()); tmpObj.put("cname", allapps.getEmployee().getFirstName() + " " + allapps.getEmployee().getLastName()); tmpObj.put("email", allapps.getEmployee().getEmailID()); tmpObj.put("fname", allapps.getEmployee().getFirstName()); tmpObj.put("lname", allapps.getEmployee().getLastName() != null ? allapps.getEmployee().getLastName() : ""); tmpObj.put("contact", allapps.getEmployee().getContactNumber() != null ? allapps.getEmployee().getContactNumber() : ""); tmpObj.put("addr", allapps.getEmployee().getAddress() != null ? allapps.getEmployee().getAddress() : ""); tmpObj.put("employeetype", 1); } ArrayList recruiterparams = new ArrayList(); recruiterparams.add(allapps.getId()); ArrayList filter_names = new ArrayList(); filter_names.add("allapplication.id"); requestParams.clear(); requestParams.put("filter_names", filter_names); requestParams.put("filter_values", recruiterparams); recruitresult = hrmsRecJobDAOObj.getRecruiters(requestParams); String recruiter = ""; if (StringUtil.checkResultobjList(recruitresult)) { List recruiterlist = recruitresult.getEntityList(); for (int k = 0; k < recruiterlist.size(); k++) { Recruiter r = (Recruiter) recruiterlist.get(k); recruiter += (r.getRecruit().getFirstName() + " " + r.getRecruit().getLastName()); if (recruiterlist.size() > k + 1) recruiter += ", "; } } tmpObj.put("recruiter", recruiter); tmpObj.put("callback", (allapps.getCallback() == null ? "" : allapps.getCallback().getValue())); tmpObj.put("interviewplace", allapps.getInterviewplace()); tmpObj.put("interviewcomment", allapps.getInterviewcomment()); tmpObj.put("rank", (allapps.getRank() == null ? "" : allapps.getRank().getValue())); jarr.put(tmpObj); } jobj.put("data", jarr); jobj.put("count", count); } catch (Exception e) { e.printStackTrace(); } finally { return jobj; } }
From source file:com.krawler.spring.hrms.rec.job.hrmsRecJobController.java
public ModelAndView getJobApplications(HttpServletRequest request, HttpServletResponse response) { KwlReturnObject result = null, recruitresult = null; JSONObject jobj = new JSONObject(); JSONObject jobj1 = new JSONObject(); JSONArray jarr = new JSONArray(); String hql = ""; int count = 0; boolean isadmin = false; HashMap<String, Object> requestParams = new HashMap<String, Object>(); int type = 0; try {// ww w. j a v a 2 s . c om String Searchjson = request.getParameter("searchJson"); List lst = null; List lst1 = null; String cmpid = sessionHandlerImplObj.getCompanyid(request); String userid = sessionHandlerImplObj.getUserid(request); requestParams.clear(); requestParams.put("userid", userid); if (hrmsCommonDAOObj.isAdmin(userid)) { isadmin = true; } ArrayList params = new ArrayList(); ArrayList filter_name = new ArrayList(); ArrayList order_by = new ArrayList(); ArrayList order_type = new ArrayList(); String ss = request.getParameter("ss"); int statusid = StringUtil.isNullOrEmpty(request.getParameter("statusid")) ? -1 : Integer.parseInt(request.getParameter("statusid")); String tempstatus = statusid == 1 ? "Pending" : (statusid == 2 ? "Shortlisted" : (statusid == 3 ? "In Process" : (statusid == 4 ? "On Hold" : ""))); if (StringUtil.isNullOrEmpty(request.getParameter("userid"))) { int emptype = Integer.parseInt(request.getParameter("employeetype")); type = emptype; int gridst = Integer.parseInt(request.getParameter("gridst")); String[] searchArray = null; String[] searchArray1 = null; if (emptype == 1) {//Internal searchArray = new String[] { "employee.firstName", "employee.lastName", "position.jobid", "position.departmentid.value" }; params.add(0); filter_name.add("employee.deleteflag"); } else if (emptype == 2) { // else added to execute only one condition emptype = 1; searchArray = new String[] { "employee.firstName", "employee.lastName", "position.jobid", "position.departmentid.value" }; searchArray1 = new String[] { "configjobapplicant.col1", "configjobapplicant.col2", "position.jobid", "position.departmentid.value" }; params.add(0); filter_name.add("employee.deleteflag"); params.add(false); filter_name.add("configjobapplicant.deleted"); } else {//External searchArray = new String[] { "configjobapplicant.col1", "configjobapplicant.col2", "position.jobid", "position.departmentid.value" }; params.add(false); filter_name.add("configjobapplicant.deleted"); } if (emptype == 0) { emptype = 4; //configjobapplicant=4 reset to 0 } if (StringUtil.isNullOrEmpty(request.getParameter("status"))) { params.add(gridst); params.add(cmpid); params.add(0); params.add(emptype); //params.add(false); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("employeetype"); //filter_name.add("configjobapplicant.deleted"); } else { if (!tempstatus.equals("")) { params.add(gridst); params.add(cmpid); params.add(0); params.add(tempstatus); params.add(emptype); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("status"); filter_name.add("employeetype"); } else { params.add(gridst); params.add(cmpid); params.add(0); params.add(emptype); filter_name.add("applicationflag"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("employeetype"); } } if (!isadmin) { params.add(userid); filter_name.add("position.manager.userID"); } order_by.add("position.departmentid.value"); order_by.add("position.jobid"); order_type.add(""); order_type.add("asc"); requestParams.put("filter_names", filter_name); requestParams.put("filter_values", params); ArrayList params1 = new ArrayList(params); ArrayList filter_name1 = new ArrayList(filter_name); if (filter_name1.contains("employee.deleteflag")) { params1.remove(filter_name1.indexOf("employee.deleteflag")); filter_name1.remove("employee.deleteflag"); } if (filter_name.contains("configjobapplicant.deleted") && !(emptype == 4)) { params.remove(filter_name.indexOf("configjobapplicant.deleted")); filter_name.remove("configjobapplicant.deleted"); } requestParams.put("filter_names1", filter_name1); requestParams.put("filter_values1", params1); requestParams.put("order_by", order_by); requestParams.put("order_type", order_type); requestParams.put("ss", request.getParameter("ss")); requestParams.put("searchcol", searchArray); requestParams.put("searchcol1", searchArray1); requestParams.put("allflag", false); if (!StringUtil.isNullOrEmpty(Searchjson)) { getMyAdvanceSearchparams1(Searchjson, filter_name, (type != 2 ? type : 1)); insertParamAdvanceSearchString1(params, Searchjson, type); getMyAdvanceSearchparams1(Searchjson, filter_name1, (type != 2 ? type : 0)); insertParamAdvanceSearchString1(params1, Searchjson, type); } StringUtil.checkpaging(requestParams, request); result = hrmsRecJobDAOObj.getPositionstatus(requestParams); } else { params.add(request.getParameter("userid")); params.add(cmpid); params.add(0); params.add(false); filter_name.add("configjobapplicant.id"); filter_name.add("company.companyID"); filter_name.add("delflag"); filter_name.add("configjobapplicant.deleted"); order_by.add("position.departmentid.value"); order_by.add("position.jobid"); order_type.add(""); order_type.add("asc"); requestParams.put("filter_names", filter_name); requestParams.put("filter_values", params); requestParams.put("order_by", order_by); requestParams.put("order_type", order_type); requestParams.put("ss", request.getParameter("ss")); requestParams.put("searchcol", new String[] { "position.jobid", "position.position.value" }); requestParams.put("allflag", false); if (!StringUtil.isNullOrEmpty(Searchjson)) { getMyAdvanceSearchparams1(Searchjson, filter_name, type); insertParamAdvanceSearchString1(params, Searchjson, type); } StringUtil.checkpaging(requestParams, request); result = hrmsRecJobDAOObj.getPositionstatus(requestParams); } Allapplications allapps = null; count = result.getRecordTotalCount(); lst = result.getEntityList(); for (int ctr = 0; ctr < lst.size(); ctr++) { // if(isadmin){ allapps = (Allapplications) lst.get(ctr); // }else{ // Recruiter rec=(Recruiter) lst.get(ctr); // allapps = rec.getAllapplication(); // } JSONObject tmpObj = new JSONObject(); tmpObj.put("id", allapps.getId()); tmpObj.put("posid", allapps.getPosition().getPositionid()); tmpObj.put("rejectedbefore", allapps.getRejectedbefore()); tmpObj.put("designationid", allapps.getPosition().getPosition().getId()); tmpObj.put("departmentid", allapps.getPosition().getDepartmentid().getId()); tmpObj.put("department", allapps.getPosition().getDepartmentid().getValue()); tmpObj.put("Department", allapps.getPosition().getDepartmentid().getValue()); tmpObj.put("designation", allapps.getPosition().getPosition().getValue()); tmpObj.put("jobpositionid", allapps.getPosition().getJobid()); tmpObj.put("jobid", allapps.getPosition().getPositionid()); tmpObj.put("JobId", allapps.getPosition().getPosition().getValue()); tmpObj.put("vacancy", allapps.getPosition().getNoofpos()); tmpObj.put("filled", allapps.getPosition().getPositionsfilled()); tmpObj.put("jname", allapps.getPosition().getPosition().getValue()); tmpObj.put("applydt", sessionHandlerImplObj.getDateFormatter(request).format(allapps.getApplydate())); tmpObj.put("interviewdt", (allapps.getInterviewdate() == null ? "" : sessionHandlerImplObj.getDateFormatter(request).format(allapps.getInterviewdate()))); tmpObj.put("joiningdate", (allapps.getJoiningdate() == null ? "" : sessionHandlerImplObj.getDateFormatter(request).format(allapps.getJoiningdate()))); tmpObj.put("status", allapps.getStatus()); tmpObj.put("jobDetails", allapps.getPosition().getDetails()); if (allapps.getConfigjobapplicant() != null) { tmpObj.put("apcntid", allapps.getConfigjobapplicant().getId()); tmpObj.put("cname", allapps.getConfigjobapplicant().getCol1() + " " + allapps.getConfigjobapplicant().getCol2()); tmpObj.put("email", allapps.getConfigjobapplicant().getCol3()); tmpObj.put("fname", allapps.getConfigjobapplicant().getCol1()); tmpObj.put("lname", allapps.getConfigjobapplicant().getCol2()); tmpObj.put("contact", allapps.getConfigjobapplicant().getCol4() != null ? allapps.getConfigjobapplicant().getCol4() : ""); tmpObj.put("addr", allapps.getConfigjobapplicant().getCol6() != null ? allapps.getConfigjobapplicant().getCol6() : ""); tmpObj.put("employeetype", 0); if (!StringUtil.isNullOrEmpty(allapps.getConfigjobapplicant().getCol5())) { tmpObj.put("docid", allapps.getConfigjobapplicant().getCol5()); } // getdocsbyuser(request,allapps.getConfigjobapplicant().getId(),tmpObj); } else { tmpObj.put("apcntid", allapps.getEmployee().getUserID()); tmpObj.put("cname", allapps.getEmployee().getFirstName() + " " + allapps.getEmployee().getLastName()); tmpObj.put("email", allapps.getEmployee().getEmailID()); tmpObj.put("fname", allapps.getEmployee().getFirstName()); tmpObj.put("lname", allapps.getEmployee().getLastName()); tmpObj.put("contact", allapps.getEmployee().getContactNumber()); tmpObj.put("addr", allapps.getEmployee().getAddress()); tmpObj.put("employeetype", 1); } ArrayList recruiterparams = new ArrayList(); recruiterparams.add(allapps.getId()); ArrayList filter_names = new ArrayList(); filter_names.add("allapplication.id"); requestParams.clear(); requestParams.put("filter_names", filter_names); requestParams.put("filter_values", recruiterparams); recruitresult = hrmsRecJobDAOObj.getRecruiters(requestParams); if (StringUtil.checkResultobjList(recruitresult)) { List recruiterlist = recruitresult.getEntityList(); for (int k = 0; k < recruiterlist.size(); k++) { Recruiter r = (Recruiter) recruiterlist.get(k); tmpObj.append("recruiter", r.getRecruit().getFirstName() + " " + r.getRecruit().getLastName()); } } tmpObj.put("callback", (allapps.getCallback() == null ? "" : allapps.getCallback().getValue())); tmpObj.put("interviewplace", allapps.getInterviewplace()); tmpObj.put("interviewcomment", allapps.getInterviewcomment()); tmpObj.put("rank", (allapps.getRank() == null ? "" : allapps.getRank().getValue())); jarr.put(tmpObj); } jobj.put("data", jarr); jobj.put("count", count); jobj1.put("valid", true); jobj1.put("data", jobj.toString()); } catch (Exception e) { e.printStackTrace(); } finally { return new ModelAndView("jsonView", "model", jobj1.toString()); } }
From source file:net.droidsolutions.droidcharts.core.plot.CategoryPlot.java
/** * Removes a marker for a specific dataset/renderer and, if requested, sends * a {@link PlotChangeEvent} to all registered listeners. * //from w ww .j a va 2 s . c om * @param index * the dataset/renderer index. * @param marker * the marker. * @param layer * the layer (foreground or background). * @param notify * notify listeners? * * @return A boolean indicating whether or not the marker was actually * removed. * * @since 1.0.10 */ public boolean removeDomainMarker(int index, Marker marker, Layer layer, boolean notify) { ArrayList markers; if (layer == Layer.FOREGROUND) { markers = (ArrayList) this.foregroundDomainMarkers.get(new Integer(index)); } else { markers = (ArrayList) this.backgroundDomainMarkers.get(new Integer(index)); } if (markers == null) { return false; } boolean removed = markers.remove(marker); return removed; }
From source file:net.droidsolutions.droidcharts.core.plot.CategoryPlot.java
/** * Removes a marker for a specific dataset/renderer and sends a * {@link PlotChangeEvent} to all registered listeners. * /*from w w w .ja va2 s .co m*/ * @param index * the dataset/renderer index. * @param marker * the marker. * @param layer * the layer (foreground or background). * @param notify * notify listeners. * * @return A boolean indicating whether or not the marker was actually * removed. * * @since 1.0.10 * * @see #addRangeMarker(int, Marker, Layer, boolean) */ public boolean removeRangeMarker(int index, Marker marker, Layer layer, boolean notify) { if (marker == null) { throw new IllegalArgumentException("Null 'marker' argument."); } ArrayList markers; if (layer == Layer.FOREGROUND) { markers = (ArrayList) this.foregroundRangeMarkers.get(new Integer(index)); } else { markers = (ArrayList) this.backgroundRangeMarkers.get(new Integer(index)); } if (markers == null) { return false; } boolean removed = markers.remove(marker); return removed; }
From source file:gdsc.core.clustering.ClusteringEngine.java
/** * Join valid links between clusters. Resets the link candidates. Use the neighbour count property to flag if the * candidate was joined to another cluster. * /*from w w w . j a va 2s .co m*/ * @param grid * @param nXBins * @param nYBins * @param r2 * @param candidates * Re-populate will all the remaining clusters * @param singles * Add any clusters with no neighbours * @return The number of joins that were made */ private int joinLinks(Cluster[][] grid, int nXBins, int nYBins, double r2, ArrayList<Cluster> candidates, ArrayList<Cluster> joined, ArrayList<Cluster> singles) { candidates.clear(); joined.clear(); double min = r2; Cluster cluster1 = null, cluster2 = null; for (int yBin = 0; yBin < nYBins; yBin++) { for (int xBin = 0; xBin < nXBins; xBin++) { Cluster previous = null; for (Cluster c1 = grid[xBin][yBin]; c1 != null; c1 = c1.next) { int joinFlag = 0; if (c1.validLink()) { // Check if each cluster only has 1 neighbour if (c1.neighbour == 1 && c1.closest.neighbour == 1) { //System.out.printf("Joining pairs with no neighbours @ %f\n", Math.sqrt(c1.d2)); c1.add(c1.closest); joined.add(c1.closest); joinFlag = 1; } else if (c1.d2 < min) { // Otherwise find the closest pair in case no joins are made min = c1.d2; cluster1 = c1; cluster2 = c1.closest; } } // Reset the link candidates c1.closest = null; // Check for singles if (c1.neighbour == 0) { // Add singles to the singles list and remove from the grid singles.add(c1); if (previous == null) grid[xBin][yBin] = c1.next; else previous.next = c1.next; } else { previous = c1; // Store all remaining clusters if (c1.n != 0) { candidates.add(c1); c1.neighbour = joinFlag; } } } } } //// If no joins were made then join the closest pair //if (joined.isEmpty() && cluster1 != null) // Always join the closest pair if it has not been already if (cluster1 != null && cluster1.neighbour == 0) { //System.out.printf("Joining closest pair @ %f\n", Math.sqrt(cluster1.d2)); cluster1.add(cluster2); // Remove cluster 2 from the candidates candidates.remove(cluster2); joined.add(cluster2); cluster1.neighbour = 1; } return joined.size(); }
From source file:com.clustercontrol.monitor.run.factory.RunMonitor.java
/** * ????//from w w w . j a va2s .c o m * <p> * <ol> * <li>????????{@link #setMonitorInfo(String, String)}</li> * <li>?????????{@link #setJudgementInfo()}</li> * <li>??????????{@link #setCheckInfo()}</li> * <li>???????? {@link #collect(String)}</li> * <li>???????? {@link #getCheckResult(boolean)}</li> * <li>?????????{@link #getPriority(int)}</li> * <li>????{@link #notify(boolean, String, int, Date)}</li> * </ol> * * @return ??????</code> true </code> * @throws FacilityNotFound * @throws MonitorNotFound * @throws InvalidRole * @throws EntityExistsException * @throws HinemosUnknown * * @see #setMonitorInfo(String, String) * @see #setJudgementInfo() * @see #setCheckInfo() * @see #collect(String) * @see #getCheckResult(boolean) * @see #getPriority(int) * @see #notify(boolean, String, int, Date) */ protected boolean runMonitorInfo() throws FacilityNotFound, MonitorNotFound, InvalidRole, EntityExistsException, HinemosUnknown { m_now = HinemosTime.getDateInstance(); m_priorityMap = new HashMap<Integer, ArrayList<String>>(); m_priorityMap.put(Integer.valueOf(PriorityConstant.TYPE_INFO), new ArrayList<String>()); m_priorityMap.put(Integer.valueOf(PriorityConstant.TYPE_WARNING), new ArrayList<String>()); m_priorityMap.put(Integer.valueOf(PriorityConstant.TYPE_CRITICAL), new ArrayList<String>()); m_priorityMap.put(Integer.valueOf(PriorityConstant.TYPE_UNKNOWN), new ArrayList<String>()); List<Sample> sampleList = new ArrayList<Sample>(); List<StringSample> collectedSamples = new ArrayList<>(); try { // boolean run = this.setMonitorInfo(m_monitorTypeId, m_monitorId); if (!run) { // ? return true; } // setJudgementInfo(); // ?? setCheckInfo(); ArrayList<String> facilityList = null; ExecutorCompletionService<MonitorRunResultInfo> ecs = new ExecutorCompletionService<MonitorRunResultInfo>( ParallelExecution.instance().getExecutorService()); int taskCount = 0; if (!m_isMonitorJob) { // ?? // ID????? // /?true?????ID?? facilityList = new RepositoryControllerBean().getExecTargetFacilityIdList(m_facilityId, m_monitor.getOwnerRoleId()); if (facilityList.size() == 0) { return true; } m_isNode = new RepositoryControllerBean().isNode(m_facilityId); // ??????? nodeInfo = new HashMap<String, NodeInfo>(); for (String facilityId : facilityList) { try { synchronized (this) { nodeInfo.put(facilityId, new RepositoryControllerBean().getNode(facilityId)); } } catch (FacilityNotFound e) { // ??? } } m_log.debug("monitor start : monitorTypeId : " + m_monitorTypeId + ", monitorId : " + m_monitorId); /** * ? */ // ID??????? Iterator<String> itr = facilityList.iterator(); while (itr.hasNext()) { String facilityId = itr.next(); if (facilityId != null && !"".equals(facilityId)) { // ???RunMonitor???? // ????????????? RunMonitor runMonitor = this.createMonitorInstance(); // ????? runMonitor.m_monitorTypeId = this.m_monitorTypeId; runMonitor.m_monitorId = this.m_monitorId; runMonitor.m_now = this.m_now; runMonitor.m_priorityMap = this.m_priorityMap; runMonitor.setMonitorInfo(runMonitor.m_monitorTypeId, runMonitor.m_monitorId); runMonitor.setJudgementInfo(); runMonitor.setCheckInfo(); runMonitor.nodeInfo = this.nodeInfo; ecs.submit(new MonitorExecuteTask(runMonitor, facilityId)); taskCount++; if (m_log.isDebugEnabled()) { m_log.debug("starting monitor result : monitorId = " + m_monitorId + ", facilityId = " + facilityId); } } else { facilityList.remove(facilityId); } } } else { // ?? // ID????? // /?true?????ID?? facilityList = new RepositoryControllerBean().getExecTargetFacilityIdList(m_facilityId, m_monitor.getOwnerRoleId()); if (facilityList.size() != 1 || !facilityList.get(0).equals(m_facilityId)) { return true; } m_isNode = true; // ??????? nodeInfo = new HashMap<String, NodeInfo>(); try { synchronized (this) { nodeInfo.put(m_facilityId, new RepositoryControllerBean().getNode(m_facilityId)); } } catch (FacilityNotFound e) { // ??? } m_log.debug("monitor start : monitorTypeId : " + m_monitorTypeId + ", monitorId : " + m_monitorId); /** * ? */ // ???RunMonitor???? // ????????????? RunMonitor runMonitor = this.createMonitorInstance(); // ????? runMonitor.m_isMonitorJob = this.m_isMonitorJob; runMonitor.m_monitorTypeId = this.m_monitorTypeId; runMonitor.m_monitorId = this.m_monitorId; runMonitor.m_now = this.m_now; runMonitor.m_priorityMap = this.m_priorityMap; runMonitor.setMonitorInfo(runMonitor.m_monitorTypeId, runMonitor.m_monitorId); runMonitor.setJudgementInfo(); runMonitor.setCheckInfo(); runMonitor.nodeInfo = this.nodeInfo; runMonitor.m_prvData = this.m_prvData; ecs.submit(new MonitorExecuteTask(runMonitor, m_facilityId)); taskCount++; if (m_log.isDebugEnabled()) { m_log.debug("starting monitor result : monitorId = " + m_monitorId + ", facilityId = " + m_facilityId); } } /** * ?? */ MonitorRunResultInfo result = new MonitorRunResultInfo(); // ?? m_log.debug("total start : monitorTypeId : " + m_monitorTypeId + ", monitorId : " + m_monitorId); // ??? StringSample strSample = null; Sample sample = null; if (m_monitor.getCollectorFlg()) { //? - if (m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_STRING || m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_TRAP) { strSample = new StringSample(HinemosTime.getDateInstance(), m_monitor.getMonitorId()); } //? - else { sample = new Sample(HinemosTime.getDateInstance(), m_monitor.getMonitorId()); } } for (int i = 0; i < taskCount; i++) { Future<MonitorRunResultInfo> future = ecs.take(); result = future.get(); // ?? String facilityId = result.getFacilityId(); m_nodeDate = result.getNodeDate(); if (m_log.isDebugEnabled()) { m_log.debug("finished monitor : monitorId = " + m_monitorId + ", facilityId = " + facilityId); } //?????????? if (m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_STRING || m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_TRAP) { if (strSample != null) { strSample.set(facilityId, m_monitor.getMonitorTypeId(), result.getMessageOrg()); } } if (!m_isMonitorJob) { // ??? if (result.getProcessType().booleanValue()) { // ? notify(true, facilityId, result.getCheckResult(), new Date(m_nodeDate), result); // ??? if (sample != null) { int errorType = -1; if (result.isCollectorResult()) { errorType = CollectedDataErrorTypeConstant.NOT_ERROR; } else { errorType = CollectedDataErrorTypeConstant.UNKNOWN; } sample.set(facilityId, m_monitor.getItemName(), result.getValue(), errorType); } } } else { m_monitorRunResultInfo = new MonitorRunResultInfo(); m_monitorRunResultInfo.setPriority(result.getPriority()); m_monitorRunResultInfo.setCheckResult(result.getCheckResult()); m_monitorRunResultInfo.setNodeDate(m_nodeDate); m_monitorRunResultInfo .setMessageOrg(makeJobOrgMessage(result.getMessageOrg(), result.getMessage())); m_monitorRunResultInfo.setCurData(result.getCurData()); } } // ????? if (m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_STRING || m_monitor.getMonitorType() == MonitorTypeConstant.TYPE_TRAP) { //? - ????? if (strSample != null) { collectedSamples.add(strSample); } if (!collectedSamples.isEmpty()) { CollectStringDataUtil.store(collectedSamples); } } else { if (sample != null) { sampleList.add(sample); } if (!sampleList.isEmpty()) { CollectDataUtil.put(sampleList); } } m_log.debug("monitor end : monitorTypeId : " + m_monitorTypeId + ", monitorId : " + m_monitorId); return true; } catch (FacilityNotFound e) { throw e; } catch (InterruptedException e) { m_log.info("runMonitorInfo() monitorTypeId = " + m_monitorTypeId + ", monitorId = " + m_monitorId + " : " + e.getClass().getSimpleName() + ", " + e.getMessage()); return false; } catch (ExecutionException e) { m_log.info("runMonitorInfo() monitorTypeId = " + m_monitorTypeId + ", monitorId = " + m_monitorId + " : " + e.getClass().getSimpleName() + ", " + e.getMessage()); return false; } }
From source file:com.sonicle.webtop.calendar.CalendarManager.java
@Override public void updateEventObject(int calendarId, String href, net.fortuna.ical4j.model.Calendar iCalendar) throws WTException { final UserProfile.Data udata = WT.getUserData(getTargetProfileId()); int eventId = getEventIdByCategoryHref(calendarId, href, true); ICalendarInput in = new ICalendarInput(udata.getTimeZone()).withDefaultAttendeeNotify(true) .withIncludeVEventSourceInOutput(true); ArrayList<EventInput> eis = in.fromICalendarFile(iCalendar, null); if (eis.isEmpty()) throw new WTException("iCalendar object does not contain any events"); EventInput refInput = eis.remove(0); if (refInput.exRefersToPublicUid != null) throw new WTException("First iCalendar event should not have a RECURRENCE-ID set"); // Collect dates exceptions and prepare broken event to be inserted ArrayList<EventInput> eiExs = new ArrayList<>(); LinkedHashSet<LocalDate> exDates = new LinkedHashSet<>(); for (EventInput ei : eis) { if (!StringUtils.equals(ei.exRefersToPublicUid, refInput.event.getPublicUid())) continue; if (exDates.contains(ei.addsExOnMaster)) continue; exDates.add(ei.addsExOnMaster);/* w ww . j a va 2s. c om*/ if (!ei.isSourceEventCancelled()) eiExs.add(ei); } // Adds new collected exceptions and then updates master event if (!exDates.isEmpty()) { if (refInput.event.hasExcludedDates()) { refInput.event.getExcludedDates().addAll(exDates); } else { refInput.event.setExcludedDates(exDates); } } refInput.event.setEventId(eventId); refInput.event.setCalendarId(calendarId); refInput.event.setExcludedDates(exDates); updateEvent(refInput.event, true); // Here we do not support creating broken events related to the // main event series (re-attach unavailable). Instance exceptions // should have been created above as date exception into the main // event; so simply create exceptions as new events. if (!eiExs.isEmpty()) { for (EventInput eiEx : eiExs) { eiEx.event.setCalendarId(calendarId); eiEx.event.setPublicUid(null); // reset uid //TODO: handle raw value to persist custom properties try { addEvent(eiEx.event, null, true); } catch (Throwable t) { logger.error("Unable to insert exception on {} as new event", eiEx.addsExOnMaster, t); } } } }
From source file:com.qmetry.qaf.automation.step.client.gherkin.GherkinFileParser.java
@SuppressWarnings("unchecked") @Override/*from www. ja v a 2 s . c o m*/ protected Collection<Object[]> parseFile(String strFile) { ArrayList<Object[]> rows = new ArrayList<Object[]>(); ArrayList<Object[]> background = new ArrayList<Object[]>(); File textFile; int lineNo = 0; boolean bglobalTags = true; boolean outline = false; boolean isBackground = false; ArrayList<String> globalTags = new ArrayList<String>(); ArrayList<String> scenarioTags = new ArrayList<String>(); ArrayList<List<Object>> examplesTable = new ArrayList<List<Object>>(); BufferedReader br = null; try { logger.info("loading feature file: " + strFile); textFile = new File(strFile); br = new BufferedReader(new FileReader(textFile)); String strLine = ""; int lastScenarioIndex = 0; // file line by line // exclude blank lines and comments StringBuffer currLineBuffer = new StringBuffer(); while ((strLine = br.readLine()) != null) { // record line number lineNo++; /** * ignore if line is empty or comment line */ if (!("".equalsIgnoreCase(strLine.trim()) || COMMENT_CHARS.contains("" + strLine.trim().charAt(0)))) { currLineBuffer.append((strLine.trim())); // process single statement Object[] cols = new Object[] { "", "", "", lineNo }; String currLine = currLineBuffer.toString(); String type = getType(currLine); if (type == "") { // this is a statement cols[0] = outline ? convertParam(currLine) : currLine; } else { isBackground = false; if (type.equalsIgnoreCase(TAG)) { String[] tags = currLine.split(" "); if (bglobalTags) { globalTags.addAll(Arrays.asList(tags)); } else { scenarioTags.addAll(Arrays.asList(tags)); } currLineBuffer = new StringBuffer(); continue; } if (type.equalsIgnoreCase(BACKGROUND)) { isBackground = true; currLineBuffer = new StringBuffer(); continue; } System.arraycopy(currLine.split(":", 2), 0, cols, 0, 2); if (type.equalsIgnoreCase(EXAMPLES)) { Object[] scenario = rows.get(lastScenarioIndex); scenario[0] = SCENARIO; Map<Object, Object> metadata = new Gson().fromJson((String) scenario[2], Map.class); //scenario[2] = new Gson().toJson(metadata); String exampleMetadata = (String) cols[1]; if (StringUtil.isNotBlank(exampleMetadata) && exampleMetadata.trim().startsWith("{")) { metadata.putAll(new Gson().fromJson(exampleMetadata, Map.class)); scenario[2] = new Gson().toJson(metadata); currLineBuffer = new StringBuffer(); continue; } } else { scenarioTags.addAll(globalTags); String metadata = String.format("{\"groups\":%s}", new Gson().toJson(scenarioTags)); cols[2] = metadata; scenarioTags.clear(); if (type.equalsIgnoreCase(FEATURE)) { bglobalTags = false; outline = false; } else { outline = type.equalsIgnoreCase(SCENARIO_OUTELINE); } } } if (!examplesTable.isEmpty()) { String lastStamtent = (String) rows.get(rows.size() - 1)[0]; int lastStatementIndex = lastStamtent.equalsIgnoreCase(EXAMPLES) ? lastScenarioIndex : (rows.size() - 1); setExamples(rows.get(lastStatementIndex), examplesTable); examplesTable.clear(); if (lastStamtent.equalsIgnoreCase(EXAMPLES)) { rows.remove(rows.size() - 1); } } if (isBackground) background.add(cols); else { rows.add(cols); boolean scenarioStarted = StringUtil.indexOfIgnoreCase(type, SCENARIO) == 0; if (scenarioStarted) { lastScenarioIndex = rows.size() - 1; rows.addAll(background); } } currLineBuffer = new StringBuffer(); } else if (StringUtil.isNotBlank(strLine) && strLine.trim().charAt(0) == '|') { addExample(strLine.trim(), examplesTable); } } int lastStatementIndex = rows.size() - 1; String lastStamtent = (String) rows.get(lastStatementIndex)[0]; if (lastStamtent.equalsIgnoreCase(EXAMPLES)) { rows.remove(lastStatementIndex); lastStatementIndex = lastScenarioIndex; } if (!examplesTable.isEmpty()) { setExamples(rows.get(lastStatementIndex), examplesTable); examplesTable.clear(); } } catch (Exception e) { String strMsg = "Exception while reading BDD file: " + strFile + "#" + lineNo; logger.error(strMsg + e); throw new AutomationError(strMsg, e); } finally { if (br != null) { try { br.close(); } catch (IOException e) { e.printStackTrace(); } } } rows.add(new Object[] { "END", "", "", lineNo + 1 });//indicate end of BDD return rows; }
From source file:com.stratelia.webactiv.kmelia.control.ejb.KmeliaBmEJB.java
private NodeTree findNode(NodeDetail node, NodeTree tree) { SilverTrace.debug("kmelia", "KmeliaBmEJB.findNode", "root.MSG_GEN_ENTER_METHOD", "looking for node " + node.getNodePK().getId()); String path = node.getFullPath(); if (path.length() > 1) { path = path.substring(1, path.length() - 1); // remove starting and ending slash SilverTrace.debug("kmelia", "KmeliaBmEJB.findNode", "root.MSG_GEN_PARAM_VALUE", " path = " + path); ArrayList<String> pathItems = new ArrayList<String>(Arrays.asList(path.split("/"))); pathItems.remove(0); // remove root NodeTree current = tree;/*from w ww . j a v a2 s . com*/ for (String pathItem : pathItems) { if (current != null) { current = findNodeTree(pathItem, current.getChildren()); } } if (current != null) { SilverTrace.debug("kmelia", "KmeliaBmEJB.findNode", "root.MSG_GEN_EXIT_METHOD", "node " + current.getKey().getId() + " found"); return current; } } SilverTrace.error("kmelia", "KmeliaBmEJB.findNode", "root.MSG_GEN_EXIT_METHOD", "node " + node.getNodePK().getId() + " not found"); return null; }
From source file:edu.harvard.i2b2.analysis.ui.ExplorerC.java
/** * @param args//w ww.j a v a 2s . co m */ @SuppressWarnings("serial") protected Control createContents(Composite parent) { log.info("Explorer plugin version 1.6.0"); GridLayout topGridLayout = new GridLayout(1, false); topGridLayout.numColumns = 1; topGridLayout.marginWidth = 2; topGridLayout.marginHeight = 2; setLayout(topGridLayout); Composite oTreeComposite = new Composite(this, SWT.NONE); oTreeComposite.setLayout(new FillLayout(SWT.VERTICAL)); GridData gridData2 = new GridData(); gridData2.horizontalAlignment = GridData.FILL; gridData2.verticalAlignment = GridData.FILL; gridData2.grabExcessHorizontalSpace = true; gridData2.grabExcessVerticalSpace = true; oTreeComposite.setLayoutData(gridData2); // the horizontal sash form SashForm horizontalForm = new SashForm(oTreeComposite, SWT.HORIZONTAL); horizontalForm.setOrientation(SWT.HORIZONTAL); horizontalForm.setLayout(new GridLayout()); if (drawLeft) { // left sash form SashForm leftVerticalForm = new SashForm(horizontalForm, SWT.VERTICAL); leftVerticalForm.setOrientation(SWT.VERTICAL); leftVerticalForm.setLayout(new GridLayout()); if (bWantStatusLine) { slm.createControl(this, SWT.NULL); } slm.setMessage("i2b2 Explorer Version 2.0"); slm.update(true); // Create the tab folder final TabFolder oTabFolder = new TabFolder(leftVerticalForm, SWT.NONE); // Create each tab and set its text, tool tip text, // image, and control TabItem oTreeTab = new TabItem(oTabFolder, SWT.NONE); oTreeTab.setText("Concept trees"); oTreeTab.setToolTipText("Hierarchically organized patient characteristics"); oTreeTab.setControl(getConceptTreeTabControl(oTabFolder)); // Select the first tab (index is zero-based) oTabFolder.setSelection(0); // Create the tab folder final TabFolder queryRunFolder = new TabFolder(leftVerticalForm, SWT.NONE); TabItem previousRunTab = new TabItem(queryRunFolder, SWT.NONE); previousRunTab.setText("Patient Sets and Previous Queries"); previousRunTab.setToolTipText("Patient Sets & Previous Queries"); final Composite runComposite = new Composite(queryRunFolder, SWT.EMBEDDED); previousRunTab.setControl(runComposite); /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame runFrame = SWT_AWT.new_Frame(runComposite); Panel runPanel = new Panel(new BorderLayout()); try { UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName()); } catch (Exception e) { log.debug("Error setting native LAF: " + e); } runFrame.add(runPanel); JRootPane runRoot = new JRootPane(); runPanel.add(runRoot); // Select the first tab (index is zero-based) queryRunFolder.setSelection(0); } SashForm verticalForm = new SashForm(horizontalForm, SWT.VERTICAL); verticalForm.setOrientation(SWT.VERTICAL); verticalForm.setLayout(new GridLayout()); // put a tab folder in it... tabFolder = new TabFolder(verticalForm, SWT.NONE); Composite patientNumsComposite = new Composite(verticalForm, SWT.NONE); GridData patientNumData = new GridData(GridData.HORIZONTAL_ALIGN_FILL); patientNumData.grabExcessHorizontalSpace = true; patientNumsComposite.setLayoutData(patientNumData); patientNumsComposite.setLayout(null); Label patientset = new Label(patientNumsComposite, SWT.NONE); patientset.setText("Patient Set: "); patientset.setBounds(5, 9, 60, 22); patientSetText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientSetText.setText(""); // patientSetText.setEditable(false); patientSetText.setBounds(70, 5, 300, 35); leftArrowButton = new Button(patientNumsComposite, SWT.PUSH); leftArrowButton.setText("<<<"); leftArrowButton.setEnabled(false); leftArrowButton.setBounds(380, 5, 38, 22); leftArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } int start = new Integer(patientMinNumText.getText()).intValue(); int inc = new Integer(patientMaxNumText.getText()).intValue(); if (start - inc - inc <= 0) { leftArrowButton.setEnabled(false); } if (start <= patientSetSize) { rightArrowButton.setEnabled(true); } else { rightArrowButton.setEnabled(false); } if ((start - inc) >= 0) { patientMinNumText.setText("" + (start - inc)); } else { patientMinNumText.setText("1"); } if (tabFolder.getSelectionIndex() == 1) { DestroyMiniVisualization(oAwtContainer); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); PerformVisualizationQuery(oAwtContainer, patientRefId, min, max, bDisplayAllData); } } }); final Label patNum1 = new Label(patientNumsComposite, SWT.NONE); patNum1.setText(" start: "); patNum1.setBounds(425, 9, 31, 20); patientMinNumText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientMinNumText.setText("1"); patientMinNumText.setBounds(460, 5, 45, 22); final Label patNum2 = new Label(patientNumsComposite, SWT.NONE); patNum2.setText("increment:"); patNum2.setBounds(515, 9, 57, 20); patientMaxNumText = new Text(patientNumsComposite, SWT.SINGLE | SWT.BORDER); patientMaxNumText.setText("10"); patientMaxNumText.setBounds(572, 5, 45, 22); rightArrowButton = new Button(patientNumsComposite, SWT.PUSH); rightArrowButton.setText(">>>"); rightArrowButton.setEnabled(false); rightArrowButton.setBounds(626, 5, 38, 20); rightArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } int start = new Integer(patientMinNumText.getText()).intValue(); int inc = new Integer(patientMaxNumText.getText()).intValue(); if (start + inc + inc > patientSetSize) { rightArrowButton.setEnabled(false); } patientMinNumText.setText("" + (start + inc)); leftArrowButton.setEnabled(true); if (tabFolder.getSelectionIndex() == 1) { DestroyMiniVisualization(oAwtContainer); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); PerformVisualizationQuery(oAwtContainer, patientRefId, min, max, bDisplayAllData); } } }); addListener(SWT.Resize, new Listener() { public void handleEvent(Event event) { int w = getBounds().width; patientSetText.setBounds(70, 5, w - 357, 24); leftArrowButton.setBounds(w - 281, 5, 38, 24); patNum1.setBounds(w - 239, 9, 31, 24); patientMinNumText.setBounds(w - 204, 5, 45, 24); patNum2.setBounds(w - 149, 9, 57, 24); patientMaxNumText.setBounds(w - 92, 5, 45, 24); rightArrowButton.setBounds(w - 42, 5, 37, 24); } }); verticalForm.setWeights(new int[] { 25, 3 }); // Item 1: a Text Table TabItem item1 = new TabItem(tabFolder, SWT.NONE); item1.setText("Create model for Timeline"); Composite oModelComposite = new Composite(tabFolder, SWT.NONE); item1.setControl(oModelComposite); GridLayout gridLayout = new GridLayout(2, false); // gridLayout.marginHeight = 0; // gridLayout.marginWidth = 0; // gridLayout.verticalSpacing = 0; // gridLayout.horizontalSpacing = 0; gridLayout.marginTop = 2; gridLayout.marginLeft = 0; gridLayout.marginBottom = 2; gridLayout.verticalSpacing = 1; gridLayout.horizontalSpacing = 1; oModelComposite.setLayout(gridLayout); oModelQueryComposite = new FramedComposite(oModelComposite, SWT.SHADOW_NONE); // GridLayout gLq = new GridLayout(25, false); oModelQueryComposite.setLayout(new GridLayout(25, false)); oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); GridData oModelQueryButtonGridData = new GridData(GridData.FILL_HORIZONTAL); oModelQueryButtonGridData.grabExcessHorizontalSpace = false; oModelQueryButtonGridData.horizontalSpan = 2; oModelQueryButtonGridData.verticalAlignment = SWT.CENTER; oModelQueryButtonGridData.verticalIndent = 5; oModelQueryComposite.setLayoutData(oModelQueryButtonGridData); queryNamemrnlistText = new Label(oModelQueryComposite, SWT.NONE); queryNamemrnlistText.setLayoutData(new GridData(GridData.FILL_HORIZONTAL)); queryNamemrnlistText.setText("Query Name: "); // queryNamemrnlistText.setBounds(5, 4, 600, 20); queryNamemrnlistText.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } public void mouseExit(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void mouseHover(MouseEvent arg0) { oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); oModelQueryComposite.addMouseMoveListener(new MouseMoveListener() { public void mouseMove(MouseEvent arg0) { // System.out.println("mouse moved"); } }); oModelQueryComposite.addDragDetectListener(new DragDetectListener() { public void dragDetected(DragDetectEvent arg0) { // System.out.println("drag moved"); } }); Composite oGroupComposite = new Composite(oModelComposite, SWT.NONE); // GridLayout gLq = new GridLayout(25, false); oGroupComposite.setLayout(gridLayout); GridData oGroupGridData = new GridData(GridData.HORIZONTAL_ALIGN_FILL | GridData.VERTICAL_ALIGN_FILL); oGroupGridData.grabExcessHorizontalSpace = true; oGroupGridData.grabExcessVerticalSpace = true; oGroupGridData.verticalIndent = 1; oGroupGridData.verticalSpan = GridData.VERTICAL_ALIGN_FILL; // oGroupGridData.verticalAlignment = GridData.VERTICAL_ALIGN_FILL; oGroupComposite.setLayoutData(oGroupGridData); oModelGroupComposite = new FramedComposite(oGroupComposite, SWT.SHADOW_NONE); // GridLayout gLq = new GridLayout(25, false); oModelGroupComposite.setLayout(new GridLayout(25, false)); GridData oModelGroupButtonGridData = new GridData(GridData.FILL_HORIZONTAL); oModelGroupButtonGridData.grabExcessHorizontalSpace = false; oModelGroupButtonGridData.horizontalSpan = 2; oModelGroupButtonGridData.verticalAlignment = SWT.CENTER; oModelGroupButtonGridData.verticalIndent = 5; oModelGroupComposite.setLayoutData(oModelGroupButtonGridData); // GridData gdAdd = new GridData(GridData.FILL_HORIZONTAL); GridData gdDel1 = new GridData(GridData.FILL_HORIZONTAL); groupNameText = new Label(oModelGroupComposite, SWT.NONE); gdDel1.horizontalSpan = 4; groupNameText.setLayoutData(gdDel1); groupNameText.setText("Panel Name: "); // groupNameText.setBounds(80, 8, 400, 24); // groupNameText.setAlignment(SWT.CENTER); // createDragSource(queryNamemrnlistText); // createDropTarget(queryNamemrnlistText); groupNameText.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } public void mouseExit(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void mouseHover(MouseEvent arg0) { oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); // put a table in tabItem1... table = new KTable(oGroupComposite, SWT.V_SCROLL | SWT.H_SCROLL | SWT.BORDER); table.setFocus(); table.setBackground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_WHITE)); GridData tableGridData = new GridData(SWT.FILL, SWT.FILL, true, true); tableGridData.verticalIndent = 5; table.setLayoutData(tableGridData); table.setRowSelectionMode(true); // table.setMultiSelectionMode(true); // table.setModel(new KTableForModel()); table.setModel(new ConceptTableModel()); // table.getModel().setColumnWidth(0, oModelComposite.getBounds().width // - 35); table.addCellSelectionListener(new KTableCellSelectionListener() { public void cellSelected(int col, int row, int statemask) { log.debug("Cell [" + col + ";" + row + "] selected."); System.out.println("Cell [" + col + ";" + row + "] selected."); table.selectedRow = row; table.selectedColumn = col; } public void fixedCellSelected(int col, int row, int statemask) { log.debug("Header [" + col + ";" + row + "] selected."); System.out.println("Header [" + col + ";" + row + "] selected."); } }); Transfer[] types = new Transfer[] { TextTransfer.getInstance() }; // create drag source /* * DragSource source = new DragSource(queryNamemrnlistText, * DND.DROP_COPY); source.setTransfer(types); source.addDragListener(new * DragSourceAdapter() { * * @Override public void dragSetData(DragSourceEvent event) { * //DragSource ds = (DragSource) event.widget; StringWriter strWriter = * new StringWriter(); DndType dndType = new DndType(); * edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory pdoFactory * = new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory(); * PanelType panelType = new PanelType(); * * //get table rows and fill the panel object for(int i=0; i<3; i++) { * ItemType itemType = new ItemType(); * panelType.getItem().add(itemType); * * dndType.getAny().add(pdoFactory.createPanel(panelType)); * edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory dndFactory = new * edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory(); try { * ExplorerJAXBUtil * .getJAXBUtil().marshaller(dndFactory.createPluginDragDrop(dndType), * strWriter); } catch(JAXBUtilException e) { e.printStackTrace(); } * * //put the data into the event event.data = strWriter.toString(); } * * * }); */ Composite oModelAddDelButtonComposite = new Composite(oModelComposite, SWT.NONE); GridLayout gL = new GridLayout(25, false); oModelAddDelButtonComposite.setLayout(gL); GridData oModelAddDelButtonGridData = new GridData(GridData.FILL_HORIZONTAL);// HORIZONTAL_ALIGN_FILL);// | // GridData.VERTICAL_ALIGN_FILL); oModelAddDelButtonGridData.grabExcessHorizontalSpace = false; oModelAddDelButtonGridData.horizontalSpan = 2; oModelAddDelButtonComposite.setLayoutData(oModelAddDelButtonGridData); // GridData gdAdd = new GridData(GridData.FILL_HORIZONTAL); GridData gdDel = new GridData(GridData.FILL_HORIZONTAL); Button deleteArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel.horizontalSpan = 4; deleteArrowButton.setLayoutData(gdDel); deleteArrowButton.setText("Delete From List"); deleteArrowButton.addSelectionListener(new SelectionAdapter() { @SuppressWarnings("unchecked") public void widgetSelected(SelectionEvent event) { curRowNumber = 0; ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); if ((selectedRow != null) && (selectedRow.length > 0)) { String conceptName = (String) m_Model.getContentAt(1, selectedRow[0]); if (conceptName.equals("Encounter Range Line")) { } else if (conceptName.equals("Vital Status Line")) { } int rowNumber = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue(); int rid = selectedRow[0]; ArrayList list = (ArrayList) rowData.get(rowNumber - 1); for (int i = 0; i < list.size(); i++) { ConceptTableRow tr = (ConceptTableRow) list.get(i); if (tr.rowId == rid) { list.remove(i); break; } } if (list.size() == 0) { rowData.remove(rowNumber - 1); } curRowNumber = rowData.size(); resetRowNumber(); // m_Model.deleteRow(selectedRow[0]); ((ConceptTableModel) table.getModel()).deleteAllRows(); ((ConceptTableModel) table.getModel()).populateTable(rowData); /* * int newRow = 0; for(int i=0; i<rowData.size(); i++) { * ArrayList alist = (ArrayList) rowData.get(i); for(int * j=0; j<alist.size(); j++) { TableRow r = (TableRow) * alist.get(j); newRow++; r.rowId = newRow; * table.getModel().setContentAt(0, newRow, new * Integer(r.rowNumber).toString()); * table.getModel().setContentAt(1, newRow, r.conceptName); * table.getModel().setContentAt(2, newRow, r.valueType); * table.getModel().setContentAt(3, newRow, r.valueText); * table.getModel().setContentAt(4, newRow, r.height); * table.getModel().setContentAt(5, newRow, r.color); * table.getModel().setContentAt(6, newRow, r.conceptXml); } * } */ table.redraw(); } } }); Button deleteAllButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel = new GridData(GridData.FILL_HORIZONTAL); gdDel.horizontalSpan = 4; deleteAllButton.setLayoutData(gdDel); deleteAllButton.setText("Delete All "); deleteAllButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); m_Model.deleteAllRows(); curRowNumber = 0; rowData.clear(); table.redraw(); } }); Button putInOrderButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); gdDel = new GridData(GridData.FILL_HORIZONTAL); gdDel.horizontalSpan = 4; putInOrderButton.setLayoutData(gdDel); putInOrderButton.setText("Put In Order "); putInOrderButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); curRowNumber = 0; m_Model.fillDataFromTable(rowData); Collections.sort(rowData, new Comparator<Object>() { @SuppressWarnings("unchecked") public int compare(Object o1, Object o2) { int i1 = ((ConceptTableRow) ((ArrayList) o1).get(0)).rowNumber; int i2 = ((ConceptTableRow) ((ArrayList) o2).get(0)).rowNumber; if (i1 > i2) { return 1; } else if (i1 < i2) { return -1; } else { return 0; } } }); m_Model.deleteAllRows(); m_Model.populateTable(rowData); table.redraw(); } }); Button upArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); upArrowButton.setText("Move Up"); upArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); curRowNumber = 0; // KTableI2B2Model m_Model = (KTableI2B2Model) table.getModel(); // int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); int index = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue() - 1; if (index < 1) { return; } if ((selectedRow != null) && (selectedRow.length > 0)) { // m_Model.moveRow(selectedRow[0], selectedRow[0] -1); ArrayList<ConceptTableRow> list = rowData.get(index); rowData.remove(index); rowData.add(index - 1, list); resetRowNumber(); m_Model.populateTable(rowData); } table.setSelection(0, selectedRow[0] - 1, true); table.redraw(); } }); Button downArrowButton = new Button(oModelAddDelButtonComposite, SWT.PUSH); downArrowButton.setText("Move Down"); downArrowButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { ConceptTableModel m_Model = (ConceptTableModel) table.getModel(); int[] selectedRow = table.getRowSelection(); curRowNumber = 0; // KTableI2B2Model m_Model = (KTableI2B2Model) table.getModel(); // int[] selectedRow = table.getRowSelection(); m_Model.fillDataFromTable(rowData); int index = new Integer((String) (m_Model.getContentAt(0, selectedRow[0]))).intValue() - 1; if (index == (rowData.size() - 1)) { return; } if ((selectedRow != null) && (selectedRow.length > 0)) { // m_Model.moveRow(selectedRow[0], selectedRow[0] -1); ArrayList<ConceptTableRow> list = rowData.get(index); rowData.remove(index); rowData.add(index + 1, list); resetRowNumber(); m_Model.populateTable(rowData); } table.setSelection(0, selectedRow[0] + 1, true); table.redraw(); } }); Composite oModelCheckButtonComposite = new Composite(oModelComposite, SWT.NONE); GridLayout gL1 = new GridLayout(20, true); oModelCheckButtonComposite.setLayout(gL1); GridData oModelCheckButtonGridData = new GridData( GridData.HORIZONTAL_ALIGN_FILL | GridData.VERTICAL_ALIGN_FILL); oModelCheckButtonGridData.grabExcessHorizontalSpace = true; oModelCheckButtonGridData.horizontalSpan = 2; oModelCheckButtonComposite.setLayoutData(oModelCheckButtonGridData); Button displayOrNotButton = new Button(oModelCheckButtonComposite, SWT.CHECK); displayOrNotButton.setText("Display concepts with no data"); displayOrNotButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { // do something here- return null bDisplayAllData = !bDisplayAllData; } }); Button displayDemographicsOrNotButton = new Button(oModelCheckButtonComposite, SWT.CHECK); displayDemographicsOrNotButton.setText("Display patient demographics"); if ((System.getProperty("applicationName") != null) && System.getProperty("applicationName").equals("BIRN")) { displayDemographicsOrNotButton.setSelection(false); displayDemographicsOrNotButton.setEnabled(false); bDisplayDemographics = false; } else if ((System.getProperty("applicationName") == null) || System.getProperty("applicationName").equals("i2b2")) { displayDemographicsOrNotButton.setSelection(true); } displayDemographicsOrNotButton.addSelectionListener(new SelectionAdapter() { public void widgetSelected(SelectionEvent event) { bDisplayDemographics = !bDisplayDemographics; } }); if (UserInfoBean.getInstance().getCellDataUrl("identity") != null) { Composite oPatientSetComposite = new Composite(oModelComposite, SWT.NONE); GridData patientSetData = new GridData(GridData.HORIZONTAL_ALIGN_FILL); patientSetData.grabExcessHorizontalSpace = true; oPatientSetComposite.setLayoutData(patientSetData); oPatientSetComposite.setLayout(null); Label mrnlabel = new Label(oPatientSetComposite, SWT.NONE); mrnlabel.setText("MRN site:"); mrnlabel.setBounds(5, 9, 50, 20); final Combo siteCombo = new Combo(oPatientSetComposite, SWT.NULL); siteCombo.add("BWH"); siteCombo.add("MGH"); siteCombo.setBounds(57, 5, 60, 20); siteCombo.select(1); Label mrnNumber = new Label(oPatientSetComposite, SWT.NONE); mrnNumber.setText("number:"); mrnNumber.setBounds(121, 9, 40, 20); mrnlistText = new Text(oPatientSetComposite, SWT.SINGLE | SWT.BORDER); mrnlistText.setBounds(164, 5, 150, 20); mrnlistText.setText(""); Button runButton = new Button(oPatientSetComposite, SWT.PUSH); runButton.setText("Search By MRN"); runButton.setBounds(315, 5, 85, 23); runButton.addSelectionListener(new SelectionAdapter() { @SuppressWarnings("unchecked") public void widgetSelected(SelectionEvent event) { String mrns = mrnlistText.getText(); if (mrns.equals("")) { return; } String[] mrnArray = mrns.split(","); int[] idlist = new int[mrnArray.length]; String username = UserInfoBean.getInstance().getUserName(); String password = UserInfoBean.getInstance().getUserPassword(); // log.debug("User name: "+username+" password: "+password); String site = siteCombo.getText(); for (int i = 0; i < mrnArray.length; i++) { // String[] tmps = new String[2]; String tmp = mrnArray[i].replaceAll(" ", ""); // tmps = tmp.split(":"); String queryStr = "<?xml version=\"1.0\" standalone=\"yes\"?>\n" + "<search_by_local>" + "<match_id site=\"" + site.toUpperCase()/* EMPI */ + "\">" + tmp/* 100016900 */ + "</match_id>\n" + "</search_by_local>"; String resultStr = QueryClient.query(queryStr, username, password); log.debug(queryStr); log.debug(resultStr); SAXBuilder parser = new SAXBuilder(); String masterID = null; java.io.StringReader xmlStringReader = new java.io.StringReader(resultStr); try { org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement(); Element responseXml = (Element) tableXml.getChild("person_list"); // Element mrnXml = (Element) // responseXml.getChild("MRN"); java.util.List listChildren = responseXml.getChildren(); if (listChildren.isEmpty()) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("No master id found"); mBox.open(); return; } Element masterXml = (Element) responseXml.getChild("master_record"); masterID = masterXml.getAttributeValue("id"); log.debug("Patient id: " + masterID); idlist[i] = new Integer(masterID).intValue(); log.debug("MRN: " + site + "-" + tmp); } catch (Exception e1) { e1.printStackTrace(); } } if (tabFolder.getSelectionIndex() == 1) { DestroyMiniVisualization(oAwtContainer); } else if (tabFolder.getSelectionIndex() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(1); } }); } PerformVisualizationQuery(oAwtContainer, idlist, bDisplayAllData); } }); } DropTarget targetLable = new DropTarget(oModelQueryComposite, DND.DROP_COPY); targetLable.setTransfer(types); targetLable.addDropListener(new DropTargetAdapter() { @Override public void dragLeave(DropTargetEvent event) { super.dragLeave(event); oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; oModelQueryComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement().getChild("concepts", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/ont/1.1/")); if (tableXml != null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } boolean isQuery = false; if (tableXml == null) { tableXml = tableDoc.getRootElement().getChild("query_master", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/crc/psm/1.1/")); } if (tableXml != null) { isQuery = true; } else { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } if (isQuery) { ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { JAXBUtil jaxbUtil = AnalysisJAXBUtil.getJAXBUtil(); QueryMasterData ndata = new QueryMasterData(); ndata.name(tableXml.getChildText("name")); queryNamemrnlistText.setText("Query Name: " + ndata.name()); ndata.xmlContent(null); ndata.id(tableXml.getChildTextTrim("query_master_id")); ndata.userId(tableXml.getChildTextTrim("user_id")); String xmlcontent = null; String xmlrequest = null; xmlrequest = ndata.writeDefinitionQueryXML(); lastRequestMessage(xmlrequest); if (System.getProperty("webServiceMethod").equals("SOAP")) { xmlcontent = CRCQueryClient.sendPDQQueryRequestSOAP(xmlrequest); } else { xmlcontent = CRCQueryClient.sendPDQQueryRequestREST(xmlrequest); } lastResponseMessage(xmlcontent); if (xmlcontent == null) { return; } else { log.debug("Query content response: " + xmlcontent); ndata.xmlContent(xmlcontent); } JAXBElement jaxbElement = jaxbUtil.unMashallFromString(ndata.xmlContent()); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bt = messageType.getMessageBody(); MasterResponseType masterResponseType = (MasterResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), MasterResponseType.class); RequestXmlType requestXmlType = masterResponseType.getQueryMaster().get(0) .getRequestXml(); org.w3c.dom.Element element = (org.w3c.dom.Element) requestXmlType.getContent().get(0); if (element != null) { log.debug("query definition not null"); } else { log.error("query definition is null"); } String domString = edu.harvard.i2b2.common.util.xml.XMLUtil .convertDOMElementToString(element); log.debug("string output" + domString); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement queryDefinitionJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); QueryDefinitionType queryDefinitionType = (QueryDefinitionType) queryDefinitionJaxbElement .getValue(); int numOfPanels = queryDefinitionType.getPanel().size(); for (int i = 0; i < numOfPanels; i++) { PanelType panelType = queryDefinitionType.getPanel().get(i); for (int j = 0; j < panelType.getItem().size(); j++) { ItemType itemType = panelType.getItem().get(j); QueryModel nodedata = new QueryModel(); nodedata.name(itemType.getItemName()); nodedata.visualAttribute("FA"); nodedata.tooltip(itemType.getTooltip()); nodedata.fullname(itemType.getItemKey()); nodedata.hlevel(new Integer(itemType.getHlevel()).toString()); if (itemType.getItemShape() != null) { nodedata.tableRow().height = new String(itemType.getItemShape()); nodedata.tableRow().color = ((ConceptTableModel) table.getModel()) .getColor(itemType.getItemColor()); nodedata.tableRow().rowNumber = Integer .parseInt(itemType.getItemRowNumber()); } else { nodedata.tableRow().height = "Medium"; nodedata.tableRow().color = new RGB(0, 0, 128); nodedata.tableRow().rowNumber = j + 1; } nodedata.constrainByValue(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (nodedata.valueModel().hasEnumValue()) { if (nodedata.valueModel().useTextValue()) { ArrayList<String> results = new ArrayList<String>(); results.toArray(nodedata.valueModel().value().split(",")); nodedata.valueModel().selectedValues = results; } } } } // Handle Constrain By Dates for (int u = 0; u < itemType.getConstrainByDate().size(); u++) { nodedata.setTimeConstrain( itemType.getConstrainByDate().get(u).getDateFrom(), itemType.getConstrainByDate().get(u).getDateTo()); } String status = nodedata.setXmlContent(); if (status.equalsIgnoreCase("error")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage( "Response delivered from the remote server could not be understood,\n" + "you may wish to retry your last action."); mBox.open(); event.detail = DND.DROP_NONE; return; } nodeXmls.add(nodedata); } } populateTable(nodeXmls); // get query instance String xmlRequest = ndata.writeContentQueryXML(); lastRequestMessage(xmlRequest); String xmlResponse = CRCQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); InstanceResponseType instanceResponseType = (InstanceResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), InstanceResponseType.class); QueryInstanceData instanceData = null; XMLGregorianCalendar startDate = null; for (QueryInstanceType queryInstanceType : instanceResponseType.getQueryInstance()) { QueryInstanceData runData = new QueryInstanceData(); runData.visualAttribute("FA"); runData.tooltip("The results of the query run"); runData.id(new Integer(queryInstanceType.getQueryInstanceId()).toString()); XMLGregorianCalendar cldr = queryInstanceType.getStartDate(); runData.name("Results of " + "[" + cldr.getMonth() + "-" + cldr.getDay() + "-" + cldr.getYear() + " " + cldr.getHour() + ":" + cldr.getMinute() + ":" + cldr.getSecond() + "]"); if (instanceData == null) { startDate = cldr; instanceData = runData; } else { if (cldr.toGregorianCalendar().compareTo(startDate.toGregorianCalendar()) > 0) { startDate = cldr; instanceData = runData; } } } // get patient set if (instanceData == null) { event.detail = DND.DROP_NONE; return; } log.debug("Got query instance: " + instanceData.name()); xmlRequest = instanceData.writeContentQueryXML(); lastRequestMessage(xmlRequest); xmlResponse = CRCQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); ResultResponseType resultResponseType = (ResultResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), ResultResponseType.class); for (QueryResultInstanceType queryResultInstanceType : resultResponseType .getQueryResultInstance()) { if (!(queryResultInstanceType.getQueryResultType().getName() .equalsIgnoreCase("PATIENTSET"))) { continue; } String status = queryResultInstanceType.getQueryStatusType().getName(); if (status.equalsIgnoreCase("FINISHED")) { String setId = new Integer(queryResultInstanceType.getResultInstanceId()) .toString(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); patientSetText.setText("Patient Set: " + setSize + " patients"); patientRefId = new String(setId); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); if (patientSetSize > 0) { patientMaxNumText.setText(setSize); } } log.debug("Dropped set of: " + setSize + " patients"/* strs[0] */ + " with refId: " + setId/* * strs[ 1 ] */); } else { // message } } } catch (Exception e) { e.printStackTrace(); return; } } /* * else { List conceptChildren = tableXml.getChildren(); * parseDropConcepts(conceptChildren, event); * table.redraw(); } */ event.detail = DND.DROP_NONE; } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } }); // create drag source DragSource source1 = new DragSource(groupNameText, DND.DROP_COPY); source1.setTransfer(types); source1.addDragListener(new DragSourceAdapter() { @Override public void dragSetData(DragSourceEvent event) { ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } StringWriter strWriter = new StringWriter(); DndType dndType = new DndType(); edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory pdoFactory = new edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory(); PanelType panelType = new PanelType(); panelType.setInvert(0); PanelType.TotalItemOccurrences totalOccurrences = new PanelType.TotalItemOccurrences(); totalOccurrences.setValue(1); panelType.setTotalItemOccurrences(totalOccurrences); panelType.setPanelNumber(0 + 1); // panelType.setName(panelData.getItems().get(0).name() + "_" // + generateMessageId().substring(0, 4)); panelType.setName("Panel-1"); // TO DO: get table rows and fill the panel object for (int i = 1; i < i2b2Model.getRowCount(); i++) { QueryModel node = (QueryModel) i2b2Model.getContentAt(7, i); ItemType itemType = new ItemType(); itemType.setItemKey(node.fullname()); itemType.setItemName(node.name()); itemType.setTooltip(node.tooltip()); itemType.setHlevel(Integer.parseInt(node.hlevel())); itemType.setClazz("ENC"); itemType.setItemIcon(node.visualAttribute().trim()); itemType.setItemColor(i2b2Model.getColorString((RGB) i2b2Model.getContentAt(5, i))); itemType.setItemRowNumber((String) i2b2Model.getContentAt(0, i)); itemType.setItemShape((String) i2b2Model.getContentAt(4, i)); itemType.getConstrainByValue().add(node.valueModel().writeValueConstrain()); itemType.getConstrainByDate().add(node.writeTimeConstrain()); panelType.getItem().add(itemType); } dndType.getAny().add(pdoFactory.createPanel(panelType)); edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory dndFactory = new edu.harvard.i2b2.crcxmljaxb.datavo.dnd.ObjectFactory(); try { AnalysisJAXBUtil.getJAXBUtil().marshaller(dndFactory.createPluginDragDrop(dndType), strWriter); } catch (JAXBUtilException e) { e.printStackTrace(); } // put the data into the event event.data = strWriter.toString(); } }); DropTarget nameTarget = new DropTarget(groupNameText, DND.DROP_COPY); nameTarget.setTransfer(types); nameTarget.addDropListener(new DropTargetAdapter() { @Override public void dragLeave(DropTargetEvent event) { super.dragLeave(event); oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_BLACK)); } @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document panelDoc = parser.build(xmlStringReader); org.jdom.Element panelXml = panelDoc.getRootElement().getChild("panel", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/crc/psm/querydefinition/1.1/")); if (panelXml == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } else { String domString = (new XMLOutputter()).outputString(panelXml); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement panelJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); PanelType panelType = (PanelType) panelJaxbElement.getValue(); String panelname = panelType.getName(); groupNameText.setText("Panel Name: " + panelname); for (int j = 0; j < panelType.getItem().size(); j++) { ItemType itemType = panelType.getItem().get(j); QueryModel nodedata = new QueryModel(); nodedata.name(itemType.getItemName()); nodedata.visualAttribute("FA"); nodedata.tooltip(itemType.getTooltip()); nodedata.fullname(itemType.getItemKey()); nodedata.hlevel(new Integer(itemType.getHlevel()).toString()); // / need to handle query tool generated panels if (itemType.getItemShape() != null) { nodedata.tableRow().height = new String(itemType.getItemShape()); nodedata.tableRow().color = ((ConceptTableModel) table.getModel()) .getColor(itemType.getItemColor()); nodedata.tableRow().rowNumber = Integer.parseInt(itemType.getItemRowNumber()); } else { nodedata.tableRow().height = "Medium"; nodedata.tableRow().color = new RGB(0, 0, 128); nodedata.tableRow().rowNumber = j + 1; } nodedata.constrainByValue(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (itemType.getConstrainByValue().size() > 0) { nodedata.setValueConstrains(itemType.getConstrainByValue()); if (nodedata.valueModel().hasEnumValue()) { if (nodedata.valueModel().useTextValue()) { ArrayList<String> results = new ArrayList<String>(); results.toArray(nodedata.valueModel().value().split(",")); nodedata.valueModel().selectedValues = results; } } } } // Handle Constrain By Dates for (int u = 0; u < itemType.getConstrainByDate().size(); u++) { nodedata.setTimeConstrain(itemType.getConstrainByDate().get(u).getDateFrom(), itemType.getConstrainByDate().get(u).getDateTo()); } String status = nodedata.setXmlContent(); if (status.equalsIgnoreCase("error")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage( "Response delivered from the remote server could not be understood,\n" + "you may wish to retry your last action."); mBox.open(); event.detail = DND.DROP_NONE; return; } nodeXmls.add(nodedata); } // event.detail = DND.DROP_NONE; } populateTable(nodeXmls); } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } public void dragEnter(DropTargetEvent event) { TextTransfer textTransfer = TextTransfer.getInstance(); if (textTransfer.isSupportedType(event.currentDataType)) { event.detail = DND.DROP_COPY; } oModelGroupComposite.setForeground(oTheParent.getDisplay().getSystemColor(SWT.COLOR_YELLOW)); } }); DropTarget target = new DropTarget(table, DND.DROP_COPY); target.setTransfer(types); target.addDropListener(new DropTargetAdapter() { @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } try { SAXBuilder parser = new SAXBuilder(); String xmlContent = (String) event.data; java.io.StringReader xmlStringReader = new java.io.StringReader(xmlContent); org.jdom.Document tableDoc = parser.build(xmlStringReader); org.jdom.Element tableXml = tableDoc.getRootElement().getChild("concepts", Namespace.getNamespace("http://www.i2b2.org/xsd/cell/ont/1.1/")); boolean isQuery = false; if (tableXml == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; return; } if (isQuery) { ArrayList<QueryModel> nodeXmls = new ArrayList<QueryModel>(); try { JAXBUtil jaxbUtil = AnalysisJAXBUtil.getJAXBUtil(); QueryMasterData ndata = new QueryMasterData(); ndata.name(tableXml.getChildText("name")); queryNamemrnlistText.setText(ndata.name()); ndata.xmlContent(null); ndata.id(tableXml.getChildTextTrim("query_master_id")); ndata.userId(tableXml.getChildTextTrim("user_id")); String xmlcontent = null; String xmlrequest = null; xmlrequest = ndata.writeDefinitionQueryXML(); lastRequestMessage(xmlrequest); if (System.getProperty("webServiceMethod").equals("SOAP")) { xmlcontent = CRCQueryClient.sendPDQQueryRequestSOAP(xmlrequest); } else { xmlcontent = CRCQueryClient.sendPDQQueryRequestREST(xmlrequest); } lastResponseMessage(xmlcontent); if (xmlcontent == null) { return; } else { log.debug("Query content response: " + xmlcontent); ndata.xmlContent(xmlcontent); } JAXBElement jaxbElement = jaxbUtil.unMashallFromString(ndata.xmlContent()); ResponseMessageType messageType = (ResponseMessageType) jaxbElement.getValue(); BodyType bt = messageType.getMessageBody(); MasterResponseType masterResponseType = (MasterResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), MasterResponseType.class); RequestXmlType requestXmlType = masterResponseType.getQueryMaster().get(0) .getRequestXml(); org.w3c.dom.Element element = (org.w3c.dom.Element) requestXmlType.getContent().get(0); if (element != null) { log.debug("query definition not null"); } else { log.error("query definition is null"); } String domString = edu.harvard.i2b2.common.util.xml.XMLUtil .convertDOMElementToString(element); log.debug("string output" + domString); JAXBContext jc1 = JAXBContext .newInstance(edu.harvard.i2b2.crcxmljaxb.datavo.psm.query.ObjectFactory.class); Unmarshaller unMarshaller = jc1.createUnmarshaller(); JAXBElement queryDefinitionJaxbElement = (JAXBElement) unMarshaller .unmarshal(new StringReader(domString)); QueryDefinitionType queryDefinitionType = (QueryDefinitionType) queryDefinitionJaxbElement .getValue(); int numOfPanels = queryDefinitionType.getPanel().size(); for (int i = 0; i < numOfPanels; i++) { PanelType panelType = queryDefinitionType.getPanel().get(i); for (int j = 0; j < panelType.getItem().size(); j++) { ItemType itemType = panelType.getItem().get(j); QueryModel nodedata = new QueryModel(); nodedata.name(itemType.getItemName()); nodedata.visualAttribute("FA"); nodedata.tooltip(itemType.getTooltip()); nodedata.fullname(itemType.getItemKey()); nodedata.hlevel(new Integer(itemType.getHlevel()).toString()); String status = nodedata.setXmlContent(); if (status.equalsIgnoreCase("error")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage( "Response delivered from the remote server could not be understood,\n" + "you may wish to retry your last action."); mBox.open(); event.detail = DND.DROP_NONE; return; } nodeXmls.add(nodedata); } } populateTable(nodeXmls); // get query instance String xmlRequest = ndata.writeContentQueryXML(); lastRequestMessage(xmlRequest); // log.debug(xmlRequest); String xmlResponse = CRCQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); InstanceResponseType instanceResponseType = (InstanceResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), InstanceResponseType.class); QueryInstanceData instanceData = null; XMLGregorianCalendar startDate = null; for (QueryInstanceType queryInstanceType : instanceResponseType.getQueryInstance()) { QueryInstanceData runData = new QueryInstanceData(); runData.visualAttribute("FA"); runData.tooltip("The results of the query run"); runData.id(new Integer(queryInstanceType.getQueryInstanceId()).toString()); XMLGregorianCalendar cldr = queryInstanceType.getStartDate(); runData.name("Results of " + "[" + cldr.getMonth() + "-" + cldr.getDay() + "-" + cldr.getYear() + " " + cldr.getHour() + ":" + cldr.getMinute() + ":" + cldr.getSecond() + "]"); if (instanceData == null) { startDate = cldr; instanceData = runData; } else { if (cldr.toGregorianCalendar().compareTo(startDate.toGregorianCalendar()) > 0) { startDate = cldr; instanceData = runData; } } } // get patient set if (instanceData == null) { event.detail = DND.DROP_NONE; return; } log.debug("Got query instance: " + instanceData.name()); xmlRequest = instanceData.writeContentQueryXML(); lastRequestMessage(xmlRequest); xmlResponse = CRCQueryClient.sendPDQQueryRequestREST(xmlRequest); lastResponseMessage(xmlResponse); jaxbElement = jaxbUtil.unMashallFromString(xmlResponse); messageType = (ResponseMessageType) jaxbElement.getValue(); bt = messageType.getMessageBody(); ResultResponseType resultResponseType = (ResultResponseType) new JAXBUnWrapHelper() .getObjectByClass(bt.getAny(), ResultResponseType.class); for (QueryResultInstanceType queryResultInstanceType : resultResponseType .getQueryResultInstance()) { if (!(queryResultInstanceType.getQueryResultType().getName() .equalsIgnoreCase("PATIENTSET"))) { continue; } String status = queryResultInstanceType.getQueryStatusType().getName(); if (status.equalsIgnoreCase("FINISHED")) { // resultData.name("Patient Set - "+resultData // .patientCount()+" Patients"); // QueryResultData resultData = new // QueryResultData(); String setId = new Integer(queryResultInstanceType.getResultInstanceId()) .toString(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); patientSetText.setText("Patient Set: " + setSize + " patients");// strs[0]); patientRefId = new String(setId);// strs[1]); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); if (patientSetSize > 0) { patientMaxNumText.setText(setSize); } } log.debug("Dropped set of: " + setSize + " patients"/* strs[0] */ + " with refId: " + setId/* * strs[ 1 ] */); } else { // message } } } catch (Exception e) { e.printStackTrace(); return; } } else { List conceptChildren = tableXml.getChildren(); parseDropConcepts(conceptChildren, event); // System.setProperty("XMLfrommodel",(String) // event.data); table.redraw(); } event.detail = DND.DROP_NONE; } catch (JDOMException e) { System.err.println(e.getMessage()); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here."); mBox.open(); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } catch (Exception e) { System.err.println(e.getMessage()); event.detail = DND.DROP_NONE; e.printStackTrace(); return; } } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; } }); DropTarget target1 = new DropTarget(patientSetText, DND.DROP_COPY); target1.setTransfer(types); target1.addDropListener(new DropTargetAdapter() { @SuppressWarnings("unchecked") public void drop(DropTargetEvent event) { if (event.data == null) { event.detail = DND.DROP_NONE; return; } String tmp = patientSetText.getText(); String dragStr = (String) event.data; String[] strs = dragStr.split(":"); if (strs[0].equalsIgnoreCase("logicquery")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } JAXBUtil jaxbUtil = AnalysisJAXBUtil.getJAXBUtil(); try { JAXBElement jaxbElement = jaxbUtil.unMashallFromString(dragStr); DndType dndType = (DndType) jaxbElement.getValue(); QueryResultInstanceType queryResultInstanceType = (QueryResultInstanceType) new JAXBUnWrapHelper() .getObjectByClass(dndType.getAny(), QueryResultInstanceType.class); if (queryResultInstanceType == null) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } String resultTypeName = queryResultInstanceType.getQueryResultType().getName(); if (resultTypeName == null || !resultTypeName.equalsIgnoreCase("PATIENTSET")) { MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("You can not drop this item here. It accepts a patient set only."); mBox.open(); event.detail = DND.DROP_NONE; patientSetText.setText(tmp); return; } String setId = queryResultInstanceType.getResultInstanceId(); String setSize = new Integer(queryResultInstanceType.getSetSize()).toString(); patientSetText.setText("Patient Set: " + setSize + " patients");// strs[0]); patientRefId = new String(setId);// strs[1]); patientMinNumText.setText("1"); leftArrowButton.setEnabled(false); int maxPatientNum = new Integer(patientMaxNumText.getText()).intValue(); patientSetSize = queryResultInstanceType.getSetSize(); if (patientSetSize > maxPatientNum) { rightArrowButton.setEnabled(true); patientMaxNumText.setText("10"); } else { rightArrowButton.setEnabled(false); // if(patientSetSize>0) { // patientMaxNumText.setText(setSize); // } } log.debug("Dropped set of: " + setSize + " patients"/* * strs[0 * ] */ + " with refId: " + setId/* strs[1] */); } catch (Exception e) { e.printStackTrace(); event.detail = DND.DROP_NONE; return; } } public void dragEnter(DropTargetEvent event) { event.detail = DND.DROP_COPY; } }); table.addCellResizeListener(new KTableCellResizeListener() { public void columnResized(int col, int newWidth) { log.debug("Column " + col + " resized to " + newWidth); } public void rowResized(int newHeight) { log.debug("Rows resized to " + newHeight); } }); table.addListener(SWT.Resize, new Listener() { public void handleEvent(Event event) { int tableWidth = table.getBounds().width; table.getModel().setColumnWidth(1, tableWidth - 425); } }); table.addMouseTrackListener(new MouseTrackListener() { public void mouseEnter(MouseEvent arg0) { } public void mouseExit(MouseEvent arg0) { } public void mouseHover(MouseEvent arg0) { MouseEvent evt = arg0; Rectangle rect = table.getCellRect(3, getRowNumber()); Rectangle rect1 = table.getCellRect(5, 1); // System.out.println("rect X and width: "+rect.x+","+rect.width) // ; // System.out.println("mouse X and Y: "+evt.x+","+evt.y); if (evt.y < rect.y && evt.x > rect1.x && evt.x < rect1.x + rect1.width) { table.setToolTipText("Double click the cell to change color."); } else { table.setToolTipText(""); } } }); // Item 2: a Color Palette TabItem item2 = new TabItem(tabFolder, SWT.NONE); item2.setText("Render a Timeline"); final Composite comp2 = new Composite(tabFolder, SWT.NONE); item2.setControl(comp2); GridLayout oGridLayout0 = new GridLayout(); oGridLayout0.marginWidth = 1; oGridLayout0.marginHeight = 5; comp2.setLayout(oGridLayout0); if (false) { Composite composite = new Composite(comp2, SWT.NO_BACKGROUND | SWT.EMBEDDED); /* * Set a Windows specific AWT property that prevents heavyweight * components from erasing their background. Note that this is a * global property and cannot be scoped. It might not be suitable * for your application. */ try { // System.setProperty("sun.awt.noerasebackground", "true"); } catch (NoSuchMethodError error) { } /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame frame = SWT_AWT.new_Frame(composite); Panel panel = new Panel(new BorderLayout()) { public void update(java.awt.Graphics g) { /* Do not erase the background */ paint(g); } }; frame.add(panel); JRootPane root = new JRootPane(); panel.add(root); java.awt.Container contentPane = root.getContentPane(); log.debug("got to here"); record record1 = new record(); record1.start(); record1.init(); JScrollPane scrollPane = new JScrollPane(record1); contentPane.setLayout(new BorderLayout()); contentPane.add(scrollPane); } if (true) { Composite composite = new Composite(comp2, SWT.NO_BACKGROUND | SWT.EMBEDDED); GridData gridData3 = new GridData(); gridData3.horizontalIndent = 0; gridData3.verticalIndent = 0; gridData3.horizontalAlignment = GridData.FILL; gridData3.verticalAlignment = GridData.FILL; gridData3.grabExcessHorizontalSpace = true; gridData3.grabExcessVerticalSpace = true; composite.setLayoutData(gridData3); /* Create and setting up frame */ ////for mac fix //if ( System.getProperty("os.name").toLowerCase().startsWith("mac")) //SWT_AWT.embeddedFrameClass = "sun.lwawt.macosx.CViewEmbeddedFrame"; Frame frame = SWT_AWT.new_Frame(composite); Panel panel = new Panel(new BorderLayout());// { try { UIManager.setLookAndFeel(UIManager.getSystemLookAndFeelClassName()); } catch (Exception e) { log.debug("Error setting native LAF: " + e); } frame.add(panel); JRootPane root = new JRootPane(); panel.add(root); oAwtContainer = root.getContentPane(); log.debug("got to here"); } tabFolder.addSelectionListener(new SelectionListener() { public void widgetSelected(SelectionEvent e) { ConceptTableModel i2b2Model = (ConceptTableModel) table.getModel(); i2b2Model.fillDataFromTable(rowData); if (rowData.size() == 0) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("The set up table is empty."); mBox.open(); return; } String patientSetStr = patientSetText.getText(); if (patientSetStr.equals("") && !isAll) { oTheParent.getDisplay().syncExec(new Runnable() { public void run() { tabFolder.setSelection(0); } }); MessageBox mBox = new MessageBox(table.getShell(), SWT.ICON_INFORMATION | SWT.OK); mBox.setText("Please Note ..."); mBox.setMessage("Please set a patient set or choose all datamart option."); mBox.open(); return; } if (tabFolder.getSelectionIndex() == 1) { if (patientSetStr.equalsIgnoreCase("All")) { int minPatient = 0; try { String minText = patientMinNumText.getText(); minPatient = Integer.parseInt(minText); } catch (Exception e1) { minPatient = -1; } int maxPatient = 0; try { maxPatient = Integer.parseInt(patientMaxNumText.getText()); } catch (Exception e2) { maxPatient = -1; } PerformVisualizationQuery(oAwtContainer, "All", minPatient, maxPatient, bDisplayAllData); } else { int min = Integer.parseInt(patientMinNumText.getText()); int max = Integer.parseInt(patientMaxNumText.getText()); PerformVisualizationQuery(oAwtContainer, patientRefId, min, max, bDisplayAllData); } } else { DestroyMiniVisualization(oAwtContainer); } } public void widgetDefaultSelected(SelectionEvent e) { widgetSelected(e); } }); if (drawLeft) { horizontalForm.setWeights(new int[] { 30, 70 }); } return parent; }