Example usage for java.net MalformedURLException toString

Introduction

In this page you can find the example usage for java.net MalformedURLException toString.

Prototype

public String toString() 

Source Link

Document

Returns a short description of this throwable.

Usage

From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DownloadNCBITraceXML.java

public void saveFullXMLFiles(int p) {

    BufferedReader br = null;//from   w  w  w  .j  a va  2 s  .c om
    BufferedWriter bw = null;

    try {
        String pagesquery = "http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?&cmd=retrieve&val=PROJECT_NAME%3D%22TCGA%22%20and%20LOAD_DATE%3E%3D%22"
                + latestLoaddate + "%22&size=" + querysize + "&dopt=xml_info&dispmax=" + pagesize + "&page="
                + p;
        //String pagesquery = "http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?&cmd=retrieve&val=project_name%3D%22TCGA%22%20and%20load_date%3E%3D%2204%2F09%2F2008%22&dopt=info&size=490552&dispmax=5&page=4&next=%3E%3E
        URL url = new URL(pagesquery);
        HttpURLConnection connection = (HttpURLConnection) url.openConnection();
        //System.out.println( "url = " + url );
        is = connection.getInputStream();
        //noinspection IOResourceOpenedButNotSafelyClosed
        br = new BufferedReader(new InputStreamReader(is));
        String line;
        fw = new FileWriter(downloaddir + File.separator + xmlfiles + "." + p + ".xml");
        //fw= new FileWriter("C:\\larry\\WorkingDoc\\"+ latestLoaddate + "\\" + xmlfiles + "." + p + ".xml");
        //noinspection IOResourceOpenedButNotSafelyClosed
        bw = new BufferedWriter(fw);
        bw.write("<traces>");
        while ((line = br.readLine()) != null) {
            for (int i = 0; i < allFieldsWeCare.length; i++) {
                if (line.contains(allFieldsWeCare[i])) {
                    if (line.contains("<pre><trace>")) {
                        line = "<trace>";
                        //System.out.println(line);
                        bw.write(line);
                        bw.newLine();
                    } else {
                        //System.out.println(line);
                        bw.write(line);
                        bw.newLine();
                    }
                }
            }
        }
        bw.write("</traces>");
        is.close();
        connection.disconnect();
    } catch (MalformedURLException e) {
        getLogger().logToLogger(Level.ERROR,
                "DownloadNCBITraceXML saveXMLFiles MalformedURLException " + e.toString());
    } catch (IOException e) {
        getLogger().logToLogger(Level.ERROR, "DownloadNCBITraceXML saveXMLFiles IOException " + e.toString());
    } finally {
        IOUtils.closeQuietly(br);
        IOUtils.closeQuietly(bw);
    }
}

---

From source file:gov.nih.nci.ncicb.tcga.dcc.qclive.common.util.DownloadNCBITraceXML.java

public void saveXMLFiles(int p) {

    BufferedReader br = null;/*w w w.  jav a 2  s . c om*/
    BufferedWriter bw = null;

    try {
        String pagesquery = "http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?&cmd=retrieve&val=PROJECT_NAME%3D%22TCGA%22%20and%20LOAD_DATE%3E%3D%22"
                + latestLoaddate + "%22&size=" + querysize + "&dopt=xml_info&dispmax=" + pagesize + "&page="
                + p;
        //String pagesquery = "http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?&cmd=retrieve&val=project_name%3D%22TCGA%22%20and%20load_date%3E%3D%2204%2F09%2F2008%22&dopt=info&size=490552&dispmax=5&page=4&next=%3E%3E
        URL url = new URL(pagesquery);
        HttpURLConnection connection = (HttpURLConnection) url.openConnection();
        //System.out.println( "url = " + url );
        is = connection.getInputStream();
        //noinspection IOResourceOpenedButNotSafelyClosed
        br = new BufferedReader(new InputStreamReader(is));
        String line;
        fw = new FileWriter(downloaddir + File.separator + xmlfiles + "." + p + ".xml");
        //fw= new FileWriter("C:\\larry\\WorkingDoc\\"+ latestLoaddate + "\\" + xmlfiles + "." + p + ".xml");
        //noinspection IOResourceOpenedButNotSafelyClosed
        bw = new BufferedWriter(fw);
        bw.write("<traces>");
        while ((line = br.readLine()) != null) {
            for (int i = 0; i < fieldsWeCareForNow.length; i++) {
                if (line.contains(fieldsWeCareForNow[i])) {
                    if (line.contains("<pre><trace>")) {
                        line = "<trace>";
                        //System.out.println(line);
                        bw.write(line);
                        bw.newLine();
                    } else {
                        //System.out.println(line);
                        bw.write(line);
                        bw.newLine();
                    }
                }
            }
        }
        bw.write("</traces>");
        //fw.close();
        is.close();
        connection.disconnect();
    } catch (MalformedURLException e) {
        getLogger().logToLogger(Level.ERROR,
                "DownloadNCBITraceXML saveXMLFiles MalformedURLException " + e.toString());
    } catch (IOException e) {
        getLogger().logToLogger(Level.ERROR, "DownloadNCBITraceXML saveXMLFiles IOException " + e.toString());
    } finally {
        IOUtils.closeQuietly(br);
        IOUtils.closeQuietly(bw);
    }
}

---

From source file:fr.itldev.koya.services.impl.UserServiceImpl.java

/**
 * Authenticates user with authentication key that could be his login or
 * email./*from  ww  w .  j a  v a2s.co  m*/
 *
 *
 * TODO give md5 or other secured password instead of clear.
 *
 * @param authKey
 * @param password
 * @return
 * @throws fr.itldev.koya.services.exceptions.AlfrescoServiceException
 */
@Override
public User login(String authKey, String password) throws RestClientException, AlfrescoServiceException {

    //call rest ticket
    AuthTicket ticket = fromJSON(new TypeReference<AuthTicket>() {
    }, getTemplate().getForObject(getAlfrescoServerUrl() + REST_GET_LOGIN, String.class, authKey, password));
    //Get User Object
    Map emailPostWrapper = new HashMap();
    emailPostWrapper.put("authKey", authKey);
    User user = fromJSON(new TypeReference<User>() {
    }, getTemplate().postForObject(getAlfrescoServerUrl() + REST_POST_PERSONFROMMAIL, emailPostWrapper,
            String.class, ticket));

    //Authentication ticket integration
    user.setTicketAlfresco(ticket.toString());
    try {
        //set users authenticated rest template
        user.setRestTemplate(getAuthenticatedRestTemplate(user.getUserName(), password));
    } catch (MalformedURLException ex) {
        throw new AlfrescoServiceException(ex.toString());
    }
    //load users rest prefrences
    loadPreferences(user);
    //
    user.setPassword(password);
    return user;
}

---

From source file:se.lu.nateko.edca.svc.GetCapabilities.java

/**
 * Method that calls a geospatial server using a GetCapablities request and,
 * if successful, forwards the resulting XML object to the XML parser.
 * @return   Returns true if successful, otherwise false.
 *//*from w  w w.  j  a  v a 2  s .  c om*/
protected boolean getCapabilitiesRequest() {
    Log.d(TAG, "getCapabilitiesRequest() called.");

    /* Execute the HTTP request. */
    HttpGet httpGetMethod = new HttpGet(mServerURI);
    HttpResponse response;
    try {
        final HttpParams httpParameters = mHttpClient.getParams();
        HttpConnectionParams.setConnectionTimeout(httpParameters, TIME_OUT * 1000);
        HttpConnectionParams.setSoTimeout(httpParameters, TIME_OUT * 1000);

        response = mHttpClient.execute(httpGetMethod);
        Log.i(TAG, "GetCapabilities request made to server: " + httpGetMethod.getURI().toString());

        //          Log.v(TAG, "Length: " + response.getEntity().getContentLength() + ", Type: " + response.getEntity().getContentType() + ", Encoding: " + response.getEntity().getContentEncoding());

        InputStream xmlStream = response.getEntity().getContent();
        InputStreamReader reader = new InputStreamReader(xmlStream, "UTF-8");
        BufferedReader buffReader = new BufferedReader(reader, 4096);

        /* Remove all non-stored and inactive layers from the table to make room for the new result of the GetCapabilities XML parsing. */
        mService.clearRemoteLayers();

        /* Check for already stored layers so they are not duplicated. */
        Cursor storedCursor = mService.getSQLhelper().fetchData(LocalSQLDBhelper.TABLE_LAYER,
                LocalSQLDBhelper.KEY_LAYER_COLUMNS, LocalSQLDBhelper.ALL_RECORDS, null, true);
        mService.getActiveActivity().startManagingCursor(storedCursor);
        while (storedCursor.moveToNext()) {
            mStoredLayers.add(storedCursor.getString(1));
            Log.v(TAG, "Stored layer: " + storedCursor.getString(1));
        }

        try {
            Log.v(TAG, "Sending response (BufferedReader) to parser...");
            return parseXMLResponse(buffReader); // Send the HttpResponse as a Reader to parse its content.
        } finally {
            buffReader.close();
        }

    } catch (MalformedURLException e) {
        Log.e(TAG, e.toString());
        return false;
    } catch (IOException e) {
        Log.e(TAG, e.toString());
        return false;
    }
}

---

From source file:com.orange.datavenue.DatasourceListFragment.java

private void createDatasource() {
    final android.app.Dialog dialog = new android.app.Dialog(getActivity());

    dialog.setContentView(R.layout.create_datasource_dialog);

    dialog.setTitle(R.string.add_datasource);

    final LinearLayout callbackLayout = (LinearLayout) dialog.findViewById(R.id.callback_layout);
    final EditText name = (EditText) dialog.findViewById(R.id.name);
    final EditText description = (EditText) dialog.findViewById(R.id.description);
    final EditText serial = (EditText) dialog.findViewById(R.id.serial);
    final EditText callback = (EditText) dialog.findViewById(R.id.callback);
    final CheckBox status = (CheckBox) dialog.findViewById(R.id.status);

    status.setChecked(true); // by default status is activated

    Button actionButton = (Button) dialog.findViewById(R.id.add_button);

    actionButton.setOnClickListener(new View.OnClickListener() {
        @Override//from w  w w. j a  v  a  2 s . com
        public void onClick(View view) {
            Log.d(TAG_NAME, "name : " + name.getText().toString());
            Log.d(TAG_NAME, "description : " + description.getText().toString());
            Log.d(TAG_NAME, "serial : " + serial.getText().toString());
            Log.d(TAG_NAME, "status : " + status.isChecked());

            Datasource newDatasource = new Datasource();

            newDatasource.setName(name.getText().toString());
            newDatasource.setDescription(description.getText().toString());
            newDatasource.setSerial(serial.getText().toString());

            String callbackUrl = callback.getText().toString();

            if ("".equals(callbackUrl)) {
                newDatasource.setCallback(null);
            } else {
                try {
                    URL url = new URL(callbackUrl);
                    Callback newCallback = new Callback();
                    newCallback.setUrl(url.toString());
                    newCallback.setStatus("activated");
                    newCallback.setName("Callback");
                    newCallback.setDescription("application callback");
                    newDatasource.setCallback(newCallback);
                } catch (MalformedURLException e) {
                    Log.e(TAG_NAME, e.toString());
                    newDatasource.setCallback(null);
                    callback.setText("");
                }
            }

            if (status.isChecked()) {
                newDatasource.setStatus("activated");
            } else {
                newDatasource.setStatus("deactivated");
            }

            CreateDatasourceOperation createDatasourceOperation = new CreateDatasourceOperation(
                    Model.instance.oapiKey, Model.instance.key, newDatasource, new OperationCallback() {
                        @Override
                        public void process(Object object, Exception exception) {
                            if (exception == null) {
                                getDatasources();
                            } else {
                                Errors.displayError(getActivity(), exception);
                            }
                        }
                    });

            createDatasourceOperation.execute("");

            dialog.dismiss();
        }
    });

    Button cancelButton = (Button) dialog.findViewById(R.id.cancel_button);
    cancelButton.setOnClickListener(new View.OnClickListener() {
        @Override
        public void onClick(View view) {
            dialog.dismiss();
        }
    });

    dialog.setCancelable(false);
    dialog.show();
}

---

From source file:eionet.gdem.qa.XQueryService.java

/**
 * Request from XML/RPC client Stores the xqScript and starts a job in the workqueue.
 *
 * @param sourceURL - URL of the source XML
 * @param xqScript - XQueryScript to be processed
 * @param scriptType - xquery, xsl or xgawk
 *//*www  .jav a2s .  co m*/
public String analyze(String sourceURL, String xqScript, String scriptType) throws GDEMException {
    String xqFile = "";

    LOGGER.info("XML/RPC call for analyze xml: " + sourceURL);
    // save XQScript in a text file for the WQ
    try {
        xqFile = Utils.saveStrToFile(xqScript, scriptType);
    } catch (FileNotFoundException fne) {
        throw new GDEMException("Folder does not exist: :" + fne.toString());
    } catch (IOException ioe) {
        throw new GDEMException("Error storing XQScript into file:" + ioe.toString());
    }

    // name for temporary output file where the esult is stored:
    String resultFile = Properties.tmpFolder + File.separatorChar + "gdem_" + System.currentTimeMillis()
            + ".html";
    String newId = "-1"; // should not be returned with value -1;

    // start a job in the Workqueue
    try {
        // get the trusted URL from source file adapter
        sourceURL = SourceFileManager.getSourceFileAdapterURL(getTicket(), sourceURL, isTrustedMode());
        newId = xqJobDao.startXQJob(sourceURL, xqFile, resultFile);

    } catch (SQLException sqe) {
        sqe.printStackTrace();
        LOGGER.error("DB operation failed: " + sqe.toString());
        throw new GDEMException("DB operation failed: " + sqe.toString());
    } catch (MalformedURLException e) {
        e.printStackTrace();
        LOGGER.error("Source file URL is wrong: " + e.toString());
        throw new GDEMException("Source file URL is wrong: " + e.toString());
    } catch (IOException e) {
        e.printStackTrace();
        LOGGER.error("Error opening source file: " + e.toString());
        throw new GDEMException("Error opening source file: " + e.toString());
    }
    return newId;
}

---

From source file:util.Check.java

/**
 * This method checks if a String is a valid URL
 *//*from  www  . ja va2 s.c  om*/
public boolean isUrl(final String link) {

    boolean check = true;

    try {
        final URL url = new URL(link);
        System.out.println("Gltige URL: " + url); // unterdrckt Warnung, dass url nie gebraucht wird
    } catch (final MalformedURLException e) {
        LOG.info("isUrl: " + link + "\040" + e.toString());
        check = false;
    }

    return check;
}

---

From source file:org.kuali.mobility.bus.dao.BusDaoUMImpl.java

@Override
public void loadAlerts() {
    XStream xstream = new XStream();
    xstream.processAnnotations(UMBusAlertReader.class);
    xstream.processAnnotations(UMBusAlert.class);
    xstream.addImplicitCollection(UMBusAlertReader.class, "alerts");

    UMBusAlertReader busAlertReader = null;
    try {//w w  w .  j ava  2  s. c o m
        busAlertReader = (UMBusAlertReader) xstream.fromXML(new URL(getBusAlertUrl()));
    } catch (MalformedURLException ex) {
        LOG.error(ex.toString());
    }
    List<BusAlert> busAlerts = new ArrayList<BusAlert>();
    if (busAlertReader == null) {
        LOG.debug("busAlertReader == null");
    } else if (busAlertReader.getAlerts() == null) {
        LOG.debug("busAlertReader.getAlerts() == null");
    } else {
        for (UMBusAlert b : busAlertReader.getAlerts()) {
            BusAlert busAlert = (BusAlert) getApplicationContext().getBean("busAlert");
            busAlert.setTitle(b.getTitle());
            busAlert.setMessage(b.getMessage());
            busAlert.setColor(b.getColor());
            busAlert.setMessageType(b.getMessageType());
            busAlerts.add(busAlert);
        }
    }
    this.setAlerts(busAlerts);
}

---

From source file:org.kuali.mobility.bus.dao.BusDaoUMImpl.java

@Override
public void loadBusLocations() {
    XStream xstream = new XStream();
    xstream.processAnnotations(UMBusReader.class);
    xstream.processAnnotations(UMBus.class);
    xstream.addImplicitCollection(UMBusReader.class, "items");

    UMBusReader busReader = null;// w w w .j a  v  a  2  s.  c o  m
    try {
        busReader = (UMBusReader) xstream.fromXML(new URL(getBusLocationUrl()));
    } catch (MalformedURLException ex) {
        LOG.error(ex.toString());
    }

    List<Bus> busData = new ArrayList<Bus>();
    if (busReader == null) {
        LOG.debug("busReader == null");
    } else if (busReader.getItems() == null) {
        LOG.debug("busReader.getItems() == null");
    } else {
        for (UMBus b : busReader.getItems()) {
            Bus bus = (Bus) getApplicationContext().getBean("bus");
            bus.setName(b.getRouteName());
            bus.setId(b.getId());
            bus.setRouteId(b.getRouteId());
            bus.setRouteName(b.getRouteName());
            bus.setHeading(b.getHeading());
            bus.setColor(b.getColor());
            bus.setLatitude(b.getLatitude());
            bus.setLongitude(b.getLongitude());
            busData.add(bus);
        }
    }
    this.setBuses(busData);
}

---

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