List of usage examples for java.math BigDecimal toPlainString
public String toPlainString()
From source file:org.openbravo.materialmgmt.ReservationUtils.java
/** * Function to reallocate given reservation stock on given attributes and storage bin. *//* w w w. j a v a 2 s.com*/ public static OBError reallocateStock(Reservation reservation, Locator storageBin, AttributeSetInstance asi, BigDecimal quantity) throws OBException { OBDal.getInstance().flush(); CSResponse cs = null; try { cs = ReservationUtilsData.reallocateStock(OBDal.getInstance().getConnection(false), new DalConnectionProvider(false), reservation.getId(), storageBin.getId(), asi.getId(), quantity.toPlainString(), (String) DalUtil.getId(OBContext.getOBContext().getUser())); } catch (ServletException e) { String message = OBMessageUtils.translateError(e.getMessage()).getMessage(); throw new OBException(message, e); } OBError result = new OBError(); if (cs == null || StringUtils.isEmpty(cs.returnValue)) { throw new OBException(OBMessageUtils.messageBD("Error", false)); } result.setType("Success"); result.setMessage(OBMessageUtils.messageBD("Success", false)); if (cs.returnValue == "0") { result.setType("Error"); } else if (cs.returnValue == "2") { result.setType("Warning"); } if (StringUtils.isNotEmpty(cs.returnValueMsg)) { result.setMessage(OBMessageUtils.parseTranslation(cs.returnValueMsg)); } return result; }
From source file:org.hx.rainbow.common.util.JavaBeanUtil.java
@SuppressWarnings({ "rawtypes", "unchecked" })
private static void changeObject(Map<String, Object> map, String key, Object value, Class clazz,
String dataFormat) throws ParseException {
if (value instanceof String) {
String valueStr = (String) value;
if (clazz.isEnum()) {
map.put(key, Enum.valueOf(clazz, valueStr));
} else if (clazz == Date.class) {
SimpleDateFormat sdf = new SimpleDateFormat(DateUtil.DEFAULT_DATE_PATTERN);
Date date = sdf.parse(valueStr);
map.put(key, date);/*from ww w . java2 s . co m*/
} else if (clazz == Integer.class) {
map.put(key, Integer.valueOf(valueStr));
} else if (clazz == BigDecimal.class) {
map.put(key, new BigDecimal(valueStr));
} else if (clazz == Boolean.class) {
map.put(key, new Boolean(valueStr));
} else if (clazz == Number.class) {
map.put(key, new Integer(valueStr));
} else if (clazz == int.class) {
map.put(key, Integer.parseInt(valueStr));
} else {
map.put(key, valueStr);
}
} else if (value instanceof Integer) {
Integer valueInt = (Integer) value;
if (clazz == String.class) {
map.put(key, valueInt.toString());
} else if (clazz == Date.class) {
map.put(key, new Date(valueInt));
} else {
map.put(key, valueInt);
}
} else if (value instanceof Boolean) {
Boolean valueBoolean = (Boolean) value;
if (clazz == String.class) {
map.put(key, valueBoolean.toString());
} else {
map.put(key, valueBoolean);
}
} else if (value instanceof Date) {
Date valueDate = (Date) value;
if (clazz == String.class) {
SimpleDateFormat sdf = new SimpleDateFormat(dataFormat);
map.put(key, sdf.format(valueDate));
} else {
map.put(key, valueDate);
}
} else if (value instanceof BigDecimal) {
BigDecimal valueBigDecimal = (BigDecimal) value;
if (clazz == String.class) {
map.put(key, valueBigDecimal.toPlainString());
} else if (clazz == Integer.class) {
map.put(key, valueBigDecimal.toBigInteger());
} else {
map.put(key, valueBigDecimal);
}
} else {
map.put(key, value);
}
}
From source file:expansionBlocks.ProcessCommunities.java
private static void printTopologicalExtension(Query query, Map<Entity, Double> community) throws FileNotFoundException, UnsupportedEncodingException { File theDir = new File("images"); if (!theDir.exists()) { boolean result = theDir.mkdir(); }//w ww.ja v a 2 s .co m PrintWriter writer = FileManagement.Writer .getWriter("images/" + query.getId() + "TopologicalCommunity.txt"); writer.println("strict digraph G{"); Set<Entity> entitySet = community.keySet(); Set<Long> categoriesSet = new HashSet<>(); for (Entity e : entitySet) { categoriesSet.addAll(Article.getCategories(e.getId())); } Map<Long, Double> categoryWeightMap = new HashMap<>(); Double maxW = 0.0; for (Entity entity : entitySet) { Long entityID = entity.getId(); maxW = maxW < community.get(entityID) ? community.get(entityID) : maxW; Set<Long> neighbors = Article.getNeighbors(entityID, Graph.EDGES_OUT); Collection<Long> intersection = CollectionUtils.intersection(neighbors, entitySet); for (Long neighbourID : intersection) { if (!Article.isARedirect(entityID) && !Article.isARedirect(neighbourID)) { writer.println(entityID + " -> " + neighbourID + " [color=red];"); } } Set<Long> categories = Article.getCategories(entityID); for (Long categoryID : categories) { writer.println(entityID + " -> " + categoryID + " [color=green];"); Double w = categoryWeightMap.put(categoryID, community.get(entityID)); if (w != null && w > community.get(entityID)) categoryWeightMap.put(categoryID, w); } Set<Long> redirects = Article.getRedirections(entityID); /* for (Long redirectID : redirects) { if (!Article.isARedirect(articleID)) { } }*/ } for (Long categoryID : categoriesSet) { Set<Long> neighbors = Category.getNeigbors(categoryID, Graph.EDGES_OUT); Collection<Long> intersection = CollectionUtils.intersection(neighbors, categoriesSet); for (Long neighbourID : intersection) { writer.println(categoryID + " -> " + neighbourID + " [color=blue];"); } neighbors = Category.getNeigbors(categoryID, Graph.EDGES_IN); intersection = CollectionUtils.intersection(neighbors, categoriesSet); for (Long neighbourID : intersection) { writer.println(neighbourID + " -> " + categoryID + " [color=blue];"); } } for (Entity entity : entitySet) { String title = entity.getName(); title = Normalizer.normalize(title, Normalizer.NFD); title = title.replaceAll("\\p{InCombiningDiacriticalMarks}+", ""); title = title.replaceAll("[.]+", " "); //writer.println(id + "[label=\"" + title + "\"];"); // String weight = new BigDecimal(community.get(id)*10).toPlainString(); BigDecimal weightDouble = new BigDecimal(2 / maxW * community.get(entity) + .5); String weight = weightDouble.toPlainString(); writer.println(entity + "[label=\"" + title + "\", width=" + weight + ", height=" + weight + " fixedsize=true,style=filled,color=\"#c0c0c0\"];"); } for (Long id : categoriesSet) { String title = (new Category(id)).getName(); title = Normalizer.normalize(title, Normalizer.NFD); title = title.replaceAll("\\p{InCombiningDiacriticalMarks}+", ""); title = title.replaceAll("[.]+", " "); BigDecimal weightDouble = new BigDecimal(2 / maxW * categoryWeightMap.get(id) + .5); String weight = weightDouble.toPlainString(); writer.println(id + "[label=\"" + title + "\", width=" + weight + ", height=" + weight + " fixedsize=true,style=filled,color=\"#f0f0f0\"];"); } writer.println("}"); writer.close(); }
From source file:ca.uhn.fhir.model.primitive.IdDt.java
private static String toPlainStringWithNpeThrowIfNeeded(BigDecimal theIdPart) { if (theIdPart == null) { throw new NullPointerException("BigDecimal ID can not be null"); }/* ww w. j a v a 2 s . c om*/ return theIdPart.toPlainString(); }
From source file:gov.nih.nci.rembrandt.web.xml.FTestReport.java
public static Document getReportXML(Finding finding, Map filterMapParams, boolean allAnnotations) { DecimalFormat resultFormat = new DecimalFormat("0.0000"); DecimalFormat sciFormat = new DecimalFormat("0.00E0"); DecimalFormat tmpsciFormat = new DecimalFormat("###0.0000#####################"); /*/*from www.j av a2 s .com*/ * this is for filtering, we will want a p-value filter for CC */ ArrayList filter_string = new ArrayList(); // hashmap of genes | reporters | cytobands String filter_type = "show"; // show | hide String filter_element = "none"; // none | gene | reporter | cytoband if (filterMapParams.containsKey("filter_string") && filterMapParams.get("filter_string") != null) filter_string = (ArrayList) filterMapParams.get("filter_string"); if (filterMapParams.containsKey("filter_type") && filterMapParams.get("filter_type") != null) filter_type = (String) filterMapParams.get("filter_type"); if (filterMapParams.containsKey("filter_element") && filterMapParams.get("filter_element") != null) filter_element = (String) filterMapParams.get("filter_element"); String defaultV = "--"; String delim = " | "; Document document = DocumentHelper.createDocument(); Element report = document.addElement("Report"); Element cell = null; Element data = null; Element dataRow = null; //add the atts report.addAttribute("reportType", "Class Comparison"); report.addAttribute("helpLink", ContextSensitiveHelpTag.getHelpLink("Class Comparison")); //lets flag this as Ftest report.addAttribute("reportSubType", "FTEST"); //fudge these for now report.addAttribute("groupBy", "none"); String queryName = "none"; queryName = finding.getTaskId(); //set the queryName to be unique for session/cache access report.addAttribute("queryName", queryName); report.addAttribute("sessionId", "the session id"); report.addAttribute("creationTime", "right now"); StringBuffer sb = new StringBuffer(); int recordCount = 0; int totalSamples = 0; //TODO: instance of FTestFinding ccf = (FTestFinding) finding; //process the query details ArrayList<String> queryDetails = new ArrayList(); ClassComparisonQueryDTO ccdto = (ClassComparisonQueryDTO) ccf.getQueryDTO(); if (ccdto != null) { String tmp = ""; tmp = ccdto.getQueryName() != null ? ccdto.getQueryName() : ""; queryDetails.add("Query Name: " + tmp); tmp = ccdto.getArrayPlatformDE() != null ? ccdto.getArrayPlatformDE().getValue().toString() : ""; queryDetails.add("Array Platform: " + tmp); tmp = ""; List<ClinicalQueryDTO> grps = ccdto.getComparisonGroups() != null ? ccdto.getComparisonGroups() : new ArrayList(); Collection grs = new ArrayList(); for (ClinicalQueryDTO cdto : grps) { if (cdto.getQueryName() != null) grs.add(cdto.getQueryName()); } tmp += StringUtils.join(grs.toArray(), ", ") + " (baseline)"; queryDetails.add("Groups: " + tmp); tmp = ccdto.getExprFoldChangeDE() != null ? ccdto.getExprFoldChangeDE().getValue().toString() : ""; queryDetails.add("Fold Change: " + tmp); //queryDetails.add("Institutions: " + ccdto.getInstitutionDEs()); tmp = ccdto.getMultiGroupComparisonAdjustmentTypeDE() != null ? ccdto.getMultiGroupComparisonAdjustmentTypeDE().getValue().toString() : ""; queryDetails.add("Multi Group: " + tmp); tmp = ccdto.getStatisticalSignificanceDE() != null ? ccdto.getStatisticalSignificanceDE().getValue().toString() : ""; queryDetails.add("Stat Sig.: " + tmp); tmp = ccdto.getStatisticTypeDE() != null ? ccdto.getStatisticTypeDE().getValue().toString() : ""; queryDetails.add("Stat Type: " + tmp); } String qd = ""; for (String q : queryDetails) { qd += q + " ||| "; } if (ccf != null) { Element details = report.addElement("Query_details"); cell = details.addElement("Data"); cell.addText(qd); cell = null; Element headerRow = report.addElement("Row").addAttribute("name", "headerRow"); cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Reporter"); data = null; cell = null; //pvalue is fixed in the second column, essential for XSL cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); String isAdj = ccf.arePvaluesAdjusted() ? " (Adjusted) " : ""; data = cell.addElement("Data").addAttribute("type", "header") .addText(RembrandtConstants.PVALUE + isAdj); data = null; cell = null; //one col for each group in the comparison List<String> groupNames = ccf.getGroupNames(); for (String n : groupNames) { cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText(n + " Group Avg"); data = null; cell = null; } cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Fold Change"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Gene Symbol"); data = null; cell = null; //starting annotations...get them only if allAnnotations == true if (allAnnotations) { cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GenBank Acc"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Locus link"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GO Id"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Pathways"); data = null; cell = null; } /* done with the headerRow and SampleRow Elements, time to add data rows */ List<FTestResultEntry> fTestResultEntrys = ccf.getResultEntries(); List<String> reporterIds = new ArrayList<String>(); for (FTestResultEntry fTestResultEntry : fTestResultEntrys) { if (fTestResultEntry.getReporterId() != null) { reporterIds.add(fTestResultEntry.getReporterId()); } } ArrayPlatformType arrayPlatform = ccdto.getArrayPlatformDE() != null ? ccdto.getArrayPlatformDE().getValueObjectAsArrayPlatformType() : ArrayPlatformType.AFFY_OLIGO_PLATFORM; Map reporterResultsetMap = null; if (allAnnotations) { //Map<String, ReporterAnnotations> reporterResultsetMap = null; try { reporterResultsetMap = AnnotationHandler.getAllAnnotationsFor(reporterIds, arrayPlatform); } catch (Exception e) { e.printStackTrace(); } } else { //Map<String, String> reporterResultsetMap = null; try { reporterResultsetMap = AnnotationHandler.getGeneSymbolsFor(reporterIds, arrayPlatform); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } } for (FTestResultEntry ccre : ccf.getResultEntries()) { dataRow = report.addElement("Row").addAttribute("name", "dataRow"); cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "reporter") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(ccre.getReporterId()); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "pval").addAttribute("class", "data") .addAttribute("group", "data"); //String pv = (ccre.getPvalue() == null) ? String.valueOf(ccre.getPvalue()) : "N/A"; BigDecimal bigd = new BigDecimal(ccre.getPvalue()); data = cell.addElement("Data").addAttribute("type", "header").addText(bigd.toPlainString()); data = null; cell = null; //one col for each group for (int i = 0; i < ccre.getGroupMeans().length; i++) { cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(resultFormat.format(ccre.getGroupMeans()[i])); data = null; cell = null; } cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(String.valueOf(resultFormat.format(ccre.getMaximumFoldChange()))); data = null; cell = null; //if only showing genes if (!allAnnotations && reporterResultsetMap != null) { String reporterId = ccre.getReporterId(); String genes = reporterResultsetMap.get(reporterId) != null ? (String) reporterResultsetMap.get(reporterId) : defaultV; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; } else { //get the gene symbols for this reporter //ccre.getReporterId() String genes = defaultV; //start annotations String accIds = defaultV; String llink = defaultV; String go = defaultV; String pw = defaultV; if (reporterResultsetMap != null) { // && reporterIds != null //int count = 0; String reporterId = ccre.getReporterId(); //ReporterResultset reporterResultset = reporterResultsetMap.get(reporterId); ReporterAnnotations ra = (ReporterAnnotations) reporterResultsetMap.get(reporterId); //Collection<String> geneSymbols = (Collection<String>)reporterResultset.getAssiciatedGeneSymbols(); String geneSymbols = ra.getGeneSymbol(); if (geneSymbols != null) genes = geneSymbols; /* if(geneSymbols != null){ genes = StringUtils.join(geneSymbols.toArray(), delim); } */ Collection<String> genBank_AccIDS = (Collection<String>) ra.getAccessions(); if (genBank_AccIDS != null) { accIds = StringUtils.join(genBank_AccIDS.toArray(), delim); } Collection<String> locusLinkIDs = (Collection<String>) ra.getLocusLinks(); if (locusLinkIDs != null) { llink = StringUtils.join(locusLinkIDs.toArray(), delim); } Collection<String> goIds = (Collection<String>) ra.getGoIDS(); if (goIds != null) { go = StringUtils.join(goIds.toArray(), delim); } Collection<String> pathways = (Collection<String>) ra.getPathways(); if (pathways != null) { pw = StringUtils.join(pathways.toArray(), delim); } } cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(accIds); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(llink); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(go); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(pw); data = null; cell = null; } } } else { //TODO: handle this error sb.append("<br/><br/>Class Comparison is empty<br/>"); } logger.info(document.toString()); return document; }
From source file:gov.nih.nci.ispy.web.xml.ClassComparisonReport.java
public static Document getReportXML(Finding finding, Map filterMapParams, boolean allAnnotations) { allAnnotations = true; //force this for now ISPY prerelease - RCL 3/2 DecimalFormat resultFormat = new DecimalFormat("0.0000"); DecimalFormat sciFormat = new DecimalFormat("0.00E0"); DecimalFormat tmpsciFormat = new DecimalFormat("###0.0000#####################"); /*/*www.j av a2 s . com*/ * this is for filtering, we will want a p-value filter for CC */ ArrayList filter_string = new ArrayList(); // hashmap of genes | reporters | cytobands String filter_type = "show"; // show | hide String filter_element = "none"; // none | gene | reporter | cytoband if (filterMapParams.containsKey("filter_string") && filterMapParams.get("filter_string") != null) filter_string = (ArrayList) filterMapParams.get("filter_string"); if (filterMapParams.containsKey("filter_type") && filterMapParams.get("filter_type") != null) filter_type = (String) filterMapParams.get("filter_type"); if (filterMapParams.containsKey("filter_element") && filterMapParams.get("filter_element") != null) filter_element = (String) filterMapParams.get("filter_element"); String defaultV = "--"; String delim = " | "; Document document = DocumentHelper.createDocument(); Element report = document.addElement("Report"); Element cell = null; Element data = null; Element dataRow = null; //add the atts report.addAttribute("reportType", "Class Comparison"); //fudge these for now report.addAttribute("groupBy", "none"); String queryName = "none"; queryName = finding.getTaskId(); //set the queryName to be unique for session/cache access report.addAttribute("queryName", queryName); report.addAttribute("sessionId", "the session id"); report.addAttribute("creationTime", "right now"); StringBuffer sb = new StringBuffer(); int recordCount = 0; int totalSamples = 0; //TODO: instance of ClassComparisonFinding ccf = (ClassComparisonFinding) finding; //process the query details ArrayList<String> queryDetails = new ArrayList(); ClassComparisonQueryDTO ccdto = (ClassComparisonQueryDTO) ccf.getQueryDTO(); String reporterType = ccdto.getArrayPlatformDE().getValueObject(); if (ccdto != null) { String tmp = ""; tmp = ccdto.getQueryName() != null ? ccdto.getQueryName() : ""; queryDetails.add("Query Name: " + tmp); tmp = ccdto.getArrayPlatformDE() != null ? ccdto.getArrayPlatformDE().getValue().toString() : ""; queryDetails.add("Array Platform: " + tmp); tmp = ""; List<ClinicalQueryDTO> grps = ccdto.getComparisonGroups() != null ? ccdto.getComparisonGroups() : new ArrayList(); Collection grs = new ArrayList(); for (ClinicalQueryDTO cdto : grps) { if (cdto.getQueryName() != null) grs.add(cdto.getQueryName()); } tmp += StringUtils.join(grs.toArray(), ", ") + " (baseline)"; queryDetails.add("Groups: " + tmp); /* noHTMLString = noHTMLString.replaceAll("<", "{"); noHTMLString = noHTMLString.replaceAll(">", "}"); noHTMLString = noHTMLString.replaceAll(" ", " "); */ tmp = ccdto.getExprFoldChangeDE() != null ? ccdto.getExprFoldChangeDE().getValue().toString() : ""; queryDetails.add("Fold Change: " + tmp); //queryDetails.add("Institutions: " + ccdto.getInstitutionDEs()); tmp = ccdto.getMultiGroupComparisonAdjustmentTypeDE() != null ? ccdto.getMultiGroupComparisonAdjustmentTypeDE().getValue().toString() : ""; queryDetails.add("Multi Group: " + tmp); tmp = ccdto.getStatisticalSignificanceDE() != null ? ccdto.getStatisticalSignificanceDE().getValue().toString() : ""; queryDetails.add("Stat Sig.: " + tmp); tmp = ccdto.getStatisticTypeDE() != null ? ccdto.getStatisticTypeDE().getValue().toString() : ""; queryDetails.add("Stat Type: " + tmp); } /* queryDetails.add("Analysis Result name: " + ccform.getAnalysisResultName()); queryDetails.add("Array Platform: " + ccform.getArrayPlatform()); queryDetails.add("Baseline group: " + ccform.getBaselineGroup()); queryDetails.add("Comparison Groups: " + ccform.getSelectedGroups()[0].toString()); queryDetails.add("Comparison Adjustment: " + ccform.getComparisonAdjustment()); //queryDetails.add("Comp. Adj. Coll: " + ccform.getComparisonAdjustmentCollection()); //queryDetails.add("Existing Groups: " + ccform.getExistingGroups()); //queryDetails.add("Existing group list: " + ccform.getExistingGroupsList()); //queryDetails.add("Fold Change: " + ccform.getFoldChange()); queryDetails.add("Fold Change auto: " + ccform.getFoldChangeAuto()); //queryDetails.add("Fold change auto list: " + ccform.getFoldChangeAutoList()); //queryDetails.add("Fold change manual: " + ccform.getFoldChangeManual()); queryDetails.add("Stastic: " + ccform.getStatistic()); queryDetails.add("Stastical method: " + ccform.getStatisticalMethod()); //queryDetails.add("Stastical method coll.: " + ccform.getStatisticalMethodCollection()); queryDetails.add("Stastical significance: " + ccform.getStatisticalSignificance()); */ String qd = ""; for (String q : queryDetails) { qd += q + " ||| "; } if (ccf != null) { Element details = report.addElement("Query_details"); cell = details.addElement("Data"); cell.addText(qd); cell = null; Element headerRow = report.addElement("Row").addAttribute("name", "headerRow"); cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Reporter"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Group Avg"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); String isAdj = ccf.arePvaluesAdjusted() ? " (Adjusted) " : ""; data = cell.addElement("Data").addAttribute("type", "header").addText("P-Value" + isAdj); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Fold Change"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Gene Symbol"); data = null; cell = null; //starting annotations...get them only if allAnnotations == true if (allAnnotations) { cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GenBank Acc"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Locus link"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GO Id"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Pathways"); data = null; cell = null; } /* done with the headerRow and SampleRow Elements, time to add data rows */ /* Map<String,ReporterResultset> reporterResultsetMap = null; reporterResultsetMap = ccf.getReporterAnnotationsMap(); */ List<ClassComparisonResultEntry> classComparisonResultEntrys = ccf.getResultEntries(); List<String> reporterIds = new ArrayList<String>(); for (ClassComparisonResultEntry classComparisonResultEntry : classComparisonResultEntrys) { if (classComparisonResultEntry.getReporterId() != null) { reporterIds.add(classComparisonResultEntry.getReporterId()); } } Map reporterResultsetMap = null; try { GeneExprAnnotationService geService = GeneExprAnnotationServiceFactory.getInstance(); reporterResultsetMap = geService.getAnnotationsMapForReporters(reporterIds); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } /* //new stuff AnnotationHandler h = new AnnotationHandler(); Map reporterResultsetMap = null; if(allAnnotations){ //Map<String, ReporterAnnotations> reporterResultsetMap = null; try { reporterResultsetMap = h.getAllAnnotationsFor(reporterIds); } catch (Exception e) { e.printStackTrace(); } } else { //Map<String, String> reporterResultsetMap = null; try { reporterResultsetMap = h.getGeneSymbolsFor(reporterIds); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } } */ /* //this looks like a failsafe for the old method if(reporterResultsetMap == null) { try { reporterResultsetMap = GeneExprAnnotationService.getAnnotationsMapForReporters(reporterIds); } catch(Exception e){} } */ for (ClassComparisonResultEntry ccre : ccf.getResultEntries()) { dataRow = report.addElement("Row").addAttribute("name", "dataRow"); cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "reporter") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", reporterType).addText(ccre.getReporterId()); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(resultFormat.format(ccre.getMeanGrp1()) + " / " + resultFormat.format(ccre.getMeanBaselineGrp())); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "pval").addAttribute("class", "data") .addAttribute("group", "data"); //String pv = (ccre.getPvalue() == null) ? String.valueOf(ccre.getPvalue()) : "N/A"; String pv = defaultV; BigDecimal bigd; try { bigd = new BigDecimal(ccre.getPvalue()); pv = bigd.toPlainString(); } catch (Exception e) { //missing value } data = cell.addElement("Data").addAttribute("type", "header").addText(pv); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(String.valueOf(resultFormat.format(ccre.getFoldChange()))); data = null; cell = null; //if only showing genes if (!allAnnotations && reporterResultsetMap != null) { String reporterId = ccre.getReporterId().toUpperCase().trim(); String genes = reporterResultsetMap.get(reporterId) != null ? (String) reporterResultsetMap.get(reporterId) : defaultV; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; } else { //get the gene symbols for this reporter //ccre.getReporterId() String genes = defaultV; //start annotations String accIds = defaultV; String llink = defaultV; String go = defaultV; String pw = defaultV; if (reporterResultsetMap != null) { // && reporterIds != null //int count = 0; String reporterId = ccre.getReporterId().toUpperCase().trim(); //ReporterResultset reporterResultset = reporterResultsetMap.get(reporterId); ReporterAnnotation ra = (ReporterAnnotation) reporterResultsetMap.get(reporterId); //Collection<String> geneSymbols = (Collection<String>)reporterResultset.getAssiciatedGeneSymbols(); if (ra != null) { List geneSymbols = ra.getGeneSymbols(); //if(geneSymbols != null) // genes = geneSymbols.toString(); if (geneSymbols != null) { genes = StringUtils.join(geneSymbols.toArray(), delim); } Collection<String> genBank_AccIDS = (Collection<String>) ra.getGenbankAccessions(); if (genBank_AccIDS != null) { accIds = StringUtils.join(genBank_AccIDS.toArray(), delim); } Collection<String> locusLinkIDs = (Collection<String>) ra.getLocusLinkIds(); if (locusLinkIDs != null) { llink = StringUtils.join(locusLinkIDs.toArray(), delim); } Collection<String> goIds = (Collection<String>) ra.getGOIds(); if (goIds != null) { go = StringUtils.join(goIds.toArray(), delim); } Collection<String> pathways = (Collection<String>) ra.getPathwayIds(); if (pathways != null) { pw = StringUtils.join(pathways.toArray(), delim); } } } cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(accIds); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(llink); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(go); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(pw); data = null; cell = null; } } } else { //TODO: handle this error sb.append("<br><Br>Class Comparison is empty<br>"); } return document; }
From source file:gov.nih.nci.rembrandt.web.xml.ClassComparisonReport.java
public static Document getReportXML(Finding finding, Map filterMapParams, boolean allAnnotations, ArrayList reporterIdFilter) { DecimalFormat resultFormat = new DecimalFormat("0.0000"); DecimalFormat sciFormat = new DecimalFormat("0.00E0"); DecimalFormat tmpsciFormat = new DecimalFormat("###0.0000#####################"); /*//www . j a v a 2s . c om * this is for filtering, we will want a p-value filter for CC */ ArrayList filter_string = new ArrayList(); // hashmap of genes | reporters | cytobands String filter_type = "show"; // show | hide String filter_element = "none"; // none | gene | reporter | cytoband if (filterMapParams.containsKey("filter_string") && filterMapParams.get("filter_string") != null) filter_string = (ArrayList) filterMapParams.get("filter_string"); if (filterMapParams.containsKey("filter_type") && filterMapParams.get("filter_type") != null) filter_type = (String) filterMapParams.get("filter_type"); if (filterMapParams.containsKey("filter_element") && filterMapParams.get("filter_element") != null) filter_element = (String) filterMapParams.get("filter_element"); String defaultV = "--"; String delim = " | "; Document document = DocumentHelper.createDocument(); Element report = document.addElement("Report"); Element cell = null; Element data = null; Element dataRow = null; //add the atts report.addAttribute("reportType", "Class Comparison"); report.addAttribute("helpLink", ContextSensitiveHelpTag.getHelpLink("Class Comparison")); //fudge these for now report.addAttribute("groupBy", "none"); String queryName = "none"; queryName = finding.getTaskId(); //set the queryName to be unique for session/cache access report.addAttribute("queryName", queryName); report.addAttribute("sessionId", "the session id"); report.addAttribute("creationTime", "right now"); StringBuffer sb = new StringBuffer(); int recordCount = 0; int totalSamples = 0; //TODO: instance of ClassComparisonFinding ccf = (ClassComparisonFinding) finding; //process the query details ArrayList<String> queryDetails = new ArrayList(); ClassComparisonQueryDTO ccdto = (ClassComparisonQueryDTO) ccf.getQueryDTO(); if (ccdto != null) { String tmp = ""; tmp = ccdto.getQueryName() != null ? ccdto.getQueryName() : ""; queryDetails.add("Query Name: " + tmp); tmp = ccdto.getArrayPlatformDE() != null ? ccdto.getArrayPlatformDE().getValue().toString() : ""; queryDetails.add("Array Platform: " + tmp); tmp = ""; List<ClinicalQueryDTO> grps = ccdto.getComparisonGroups() != null ? ccdto.getComparisonGroups() : new ArrayList(); Collection grs = new ArrayList(); for (ClinicalQueryDTO cdto : grps) { if (cdto.getQueryName() != null) grs.add(cdto.getQueryName()); } tmp += StringUtils.join(grs.toArray(), ", ") + " (baseline)"; queryDetails.add("Groups: " + tmp); /* noHTMLString = noHTMLString.replaceAll("<", "{"); noHTMLString = noHTMLString.replaceAll(">", "}"); noHTMLString = noHTMLString.replaceAll(" ", " "); */ tmp = ccdto.getExprFoldChangeDE() != null ? ccdto.getExprFoldChangeDE().getValue().toString() : ""; queryDetails.add("Fold Change: " + tmp); //queryDetails.add("Institutions: " + ccdto.getInstitutionDEs()); tmp = ccdto.getMultiGroupComparisonAdjustmentTypeDE() != null ? ccdto.getMultiGroupComparisonAdjustmentTypeDE().getValue().toString() : ""; queryDetails.add("Multi Group: " + tmp); tmp = ccdto.getStatisticalSignificanceDE() != null ? ccdto.getStatisticalSignificanceDE().getValue().toString() : ""; queryDetails.add("Stat Sig.: " + tmp); tmp = ccdto.getStatisticTypeDE() != null ? ccdto.getStatisticTypeDE().getValue().toString() : ""; queryDetails.add("Stat Type: " + tmp); } /* queryDetails.add("Analysis Result name: " + ccform.getAnalysisResultName()); queryDetails.add("Array Platform: " + ccform.getArrayPlatform()); queryDetails.add("Baseline group: " + ccform.getBaselineGroup()); queryDetails.add("Comparison Groups: " + ccform.getSelectedGroups()[0].toString()); queryDetails.add("Comparison Adjustment: " + ccform.getComparisonAdjustment()); //queryDetails.add("Comp. Adj. Coll: " + ccform.getComparisonAdjustmentCollection()); //queryDetails.add("Existing Groups: " + ccform.getExistingGroups()); //queryDetails.add("Existing group list: " + ccform.getExistingGroupsList()); //queryDetails.add("Fold Change: " + ccform.getFoldChange()); queryDetails.add("Fold Change auto: " + ccform.getFoldChangeAuto()); //queryDetails.add("Fold change auto list: " + ccform.getFoldChangeAutoList()); //queryDetails.add("Fold change manual: " + ccform.getFoldChangeManual()); queryDetails.add("Stastic: " + ccform.getStatistic()); queryDetails.add("Stastical method: " + ccform.getStatisticalMethod()); //queryDetails.add("Stastical method coll.: " + ccform.getStatisticalMethodCollection()); queryDetails.add("Stastical significance: " + ccform.getStatisticalSignificance()); */ String qd = ""; for (String q : queryDetails) { qd += q + " ||| "; } if (ccf != null) { Element details = report.addElement("Query_details"); cell = details.addElement("Data"); cell.addText(qd); cell = null; Element headerRow = report.addElement("Row").addAttribute("name", "headerRow"); cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Reporter"); data = null; cell = null; //pvalue is fixed in the second column, essential for XSL cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); String isAdj = ccf.arePvaluesAdjusted() ? " (Adjusted) " : ""; data = cell.addElement("Data").addAttribute("type", "header") .addText(RembrandtConstants.PVALUE + isAdj); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Group Avg"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Fold Change"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "header") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Gene Symbol"); data = null; cell = null; //starting annotations...get them only if allAnnotations == true if (allAnnotations) { cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GenBank Acc"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Locus link"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("GO Id"); data = null; cell = null; cell = headerRow.addElement("Cell").addAttribute("type", "header").addAttribute("class", "csv") .addAttribute("group", "header"); data = cell.addElement("Data").addAttribute("type", "header").addText("Pathways"); data = null; cell = null; } /* done with the headerRow and SampleRow Elements, time to add data rows */ /* Map<String,ReporterResultset> reporterResultsetMap = null; reporterResultsetMap = ccf.getReporterAnnotationsMap(); */ List<ClassComparisonResultEntry> classComparisonResultEntrys = ccf.getResultEntries(); List<String> reporterIds = new ArrayList<String>(); HashSet<String> reporterIdSet = null; if (reporterIdFilter != null) { reporterIdSet = new HashSet<String>(reporterIdFilter); } int index = 0; if (reporterIdFilter == null) { for (ClassComparisonResultEntry classComparisonResultEntry : classComparisonResultEntrys) { if (classComparisonResultEntry.getReporterId() != null) { reporterIds.add(classComparisonResultEntry.getReporterId()); } } } else { reporterIds = reporterIdFilter; } Map reporterResultsetMap = null; ArrayPlatformType arrayPlatform = ccdto.getArrayPlatformDE() != null ? ccdto.getArrayPlatformDE().getValueObjectAsArrayPlatformType() : ArrayPlatformType.AFFY_OLIGO_PLATFORM; if (allAnnotations) { //Map<String, ReporterAnnotations> reporterResultsetMap = null; try { reporterResultsetMap = AnnotationHandler.getAllAnnotationsFor(reporterIds, arrayPlatform); } catch (Exception e) { e.printStackTrace(); } } else { try { reporterResultsetMap = AnnotationHandler.getGeneSymbolsFor(reporterIds, arrayPlatform); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } } /* //this looks like a failsafe for the old method if(reporterResultsetMap == null) { try { reporterResultsetMap = GeneExprAnnotationService.getAnnotationsMapForReporters(reporterIds); } catch(Exception e){} } */ boolean found = false; for (ClassComparisonResultEntry ccre : ccf.getResultEntries()) { if (reporterIdFilter != null) { found = reporterIdSet.contains(ccre.getReporterId()); //not found, then skip if (!found) continue; } dataRow = report.addElement("Row").addAttribute("name", "dataRow"); cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "reporter") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(ccre.getReporterId()); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "pval").addAttribute("class", "data") .addAttribute("group", "data"); //String pv = (ccre.getPvalue() == null) ? String.valueOf(ccre.getPvalue()) : "N/A"; BigDecimal bigd = new BigDecimal(ccre.getPvalue()); data = cell.addElement("Data").addAttribute("type", "header").addText(bigd.toPlainString()); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(resultFormat.format(ccre.getMeanGrp1()) + " / " + resultFormat.format(ccre.getMeanBaselineGrp())); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "data") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header") .addText(String.valueOf(resultFormat.format(ccre.getFoldChange()))); data = null; cell = null; //if only showing genes if (!allAnnotations && reporterResultsetMap != null) { String reporterId = ccre.getReporterId(); String genes = reporterResultsetMap.get(reporterId) != null ? (String) reporterResultsetMap.get(reporterId) : defaultV; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; } else { //get the gene symbols for this reporter //ccre.getReporterId() String genes = defaultV; //start annotations String accIds = defaultV; String llink = defaultV; String go = defaultV; String pw = defaultV; if (reporterResultsetMap != null) { // && reporterIds != null //int count = 0; String reporterId = ccre.getReporterId(); //ReporterResultset reporterResultset = reporterResultsetMap.get(reporterId); ReporterAnnotations ra = (ReporterAnnotations) reporterResultsetMap.get(reporterId); //Collection<String> geneSymbols = (Collection<String>)reporterResultset.getAssiciatedGeneSymbols(); String geneSymbols = ra.getGeneSymbol(); if (geneSymbols != null) genes = geneSymbols; /* if(geneSymbols != null){ genes = StringUtils.join(geneSymbols.toArray(), delim); } */ Collection<String> genBank_AccIDS = (Collection<String>) ra.getAccessions(); if (genBank_AccIDS != null) { accIds = StringUtils.join(genBank_AccIDS.toArray(), delim); } Collection<String> locusLinkIDs = (Collection<String>) ra.getLocusLinks(); if (locusLinkIDs != null) { llink = StringUtils.join(locusLinkIDs.toArray(), delim); } Collection<String> goIds = (Collection<String>) ra.getGoIDS(); if (goIds != null) { go = StringUtils.join(goIds.toArray(), delim); } Collection<String> pathways = (Collection<String>) ra.getPathways(); if (pathways != null) { pw = StringUtils.join(pathways.toArray(), delim); } } cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "gene") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(genes); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(accIds); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(llink); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(go); data = null; cell = null; cell = dataRow.addElement("Cell").addAttribute("type", "data").addAttribute("class", "csv") .addAttribute("group", "data"); data = cell.addElement("Data").addAttribute("type", "header").addText(pw); data = null; cell = null; } } } else { //TODO: handle this error sb.append("<br/><br/>Class Comparison is empty<br/>"); } return document; }
From source file:org.multibit.utils.CSMiscUtils.java
public static String getFormattedDisplayString(CSAsset asset, BigDecimal d) { if (asset == null) return ""; // FIXME: TODO: Format the string, separate method to do it. /*//from ww w . jav a 2 s .c o m https://github.com/mastercoin-MSC/spec/blob/master/AssetIssuanceStandard.md "format": "* dollars", "format_1": "1 dollar", */ String result = d.toPlainString(); // + " units"; // default if (0 == d.compareTo(BigDecimal.ONE)) { String fmt = asset.getFormat1(); if (fmt != null && fmt.trim().length() != 0) { result = fmt; return result; } } // If value is not 1, or value is 1 but format_1 does not exist, use format. String fmt = asset.getFormat(); // watch out, fmt can be empty string if (fmt != null && fmt.trim().length() != 0 && org.apache.commons.lang3.StringUtils.countMatches(fmt, "*") == 1) { result = fmt.replaceFirst("\\*", d.toPlainString()); } return result; }
From source file:es.juntadeandalucia.panelGestion.negocio.utiles.Utils.java
public static String formatSize(Integer size) { String formattedFileSize = ""; if (size != null) { BigDecimal kb = BigDecimal.valueOf(1024); BigDecimal mb = BigDecimal.valueOf(1048576); BigDecimal fileSizeBD = BigDecimal.valueOf(size); if (size > 999999) { formattedFileSize = fileSizeBD.divide(mb, 2, RoundingMode.HALF_UP).toPlainString(); formattedFileSize += " MB"; } else if (size > 999) { formattedFileSize = fileSizeBD.divide(kb, 2, RoundingMode.HALF_UP).toPlainString(); formattedFileSize += " KB"; } else {//from ww w .j av a2s . co m formattedFileSize = fileSizeBD.toPlainString(); formattedFileSize += " B"; } } return formattedFileSize; }
From source file:de.grobmeier.jjson.JSONNumber.java
/** * @param value */ public JSONNumber(BigDecimal value) { this.value = value.toPlainString(); }