List of usage examples for java.math BigDecimal toBigInteger
public BigInteger toBigInteger()
From source file:org.kalypso.model.wspm.tuhh.core.wprof.BCEShapeWPRofContentProvider.java
private <T> T toNumber(final BigDecimal in, final Class<T> outType) { if (Byte.class == outType) return outType.cast(in.byteValue()); if (Short.class == outType) return outType.cast(in.shortValue()); if (Integer.class == outType) return outType.cast(in.intValue()); if (Long.class == outType) return outType.cast(in.longValue()); if (Float.class == outType) return outType.cast(in.floatValue()); if (Double.class == outType) return outType.cast(in.doubleValue()); if (BigInteger.class == outType) return outType.cast(in.toBigInteger()); return outType.cast(in); }
From source file:com.aegiswallet.actions.MainActivity.java
public void notifyCoinsReceivedOrSent(Double amount, boolean received) { final NotificationCompat.Builder notification = new NotificationCompat.Builder(MainActivity.this); String eventTitle = ""; String eventLocation = ""; String eventDescription = ""; int wearIcon = 0; BigDecimal decimal = BigDecimal.valueOf(amount); BigInteger amountBigInt = decimal.toBigInteger(); if (received) { notification.setSmallIcon(R.drawable.aegis_receive_icon); notification.setContentText(getString(R.string.received_string) + " " + BasicUtils.satoshiToBTC(amountBigInt) + getString(R.string.btc_string)); eventTitle = "Aegis Receive"; eventLocation = "Aegis Wallet"; eventDescription = getString(R.string.received_string) + " " + BasicUtils.satoshiToBTC(amountBigInt) + getString(R.string.btc_string); wearIcon = R.drawable.aegis_receive_icon; } else if (!received) { notification.setSmallIcon(R.drawable.aegis_send_icon); notification.setContentText(getString(R.string.sent_string) + " " + BasicUtils.satoshiToBTC(amountBigInt) + getString(R.string.btc_string)); eventTitle = "Aegis Send"; eventLocation = "Aegis Wallet"; eventDescription = getString(R.string.sent_string) + " " + BasicUtils.satoshiToBTC(amountBigInt) + getString(R.string.btc_string); wearIcon = R.drawable.aegis_send_icon; }/*from w w w .j a v a 2 s .c o m*/ notification.setContentTitle(getString(R.string.app_name)); PendingIntent pendingIntent = PendingIntent.getActivity(MainActivity.this, 0, new Intent(MainActivity.this, MainActivity.class), 0); notification.setContentIntent(pendingIntent); notification.setOngoing(false); notificationManager.notify(1, notification.getNotification()); NotificationCompat.BigTextStyle bigStyle = new NotificationCompat.BigTextStyle(); bigStyle.bigText(eventDescription); NotificationCompat.Builder notificationBuilder = new NotificationCompat.Builder(this) .setSmallIcon(R.drawable.icon) .setLargeIcon(BitmapFactory.decodeResource(getResources(), R.drawable.initpageicon)) .setContentTitle(eventTitle).setContentText(eventLocation).setContentIntent(pendingIntent) .setStyle(bigStyle); }
From source file:jp.terasoluna.fw.web.struts.form.FieldChecksEx.java
/** * wtB?[h?l`FbN?B//from w w w . j ava 2s . c o m * * ?Ap?A<code>BigDecimal</code> ^?? * ??s\G?[pActionMessage???A<code>false</code> p?B * * ???w???A?mF?s?B <code>validation.xml</code> * <code>isAccordedInteger()</code> <code>"true"</code> w?? * ???`FbN?s?B `FbN???AG?[pActionMessage???Afalsep?B * * ????w???A?mF?s?B * validation.xmlisAccordedScale"true"?? ???`FbN?s?B * * <p> * G?[???AG?[????A wG?[?Xg?B G?[?bZ?[WtH?[}bg?A<code>validation-rules.xml</code> * L?q?B<br> * L?A??3?A??2?l??B * </p> * * <h5>validation.xmlL?q</h5> * <code><pre> * <form name="/sample"> * ?E?E?E * <field property="escape" * depends="number"> * <arg0 key="sample.escape"/> * <var> * <var-name>integerLength</var-name> * <var-value>3</var-value> * </var> * <var> * <var-name>scale</var-name> * <var-value>2</var-value> * </var> * <var> * <var-name>isAccordedInteger</var-name> * <var-value>true</var-value> * </var> * <var> * <var-name>isAccordedScale</var-name> * <var-value>true</var-value> * </var> * </field> * ?E?E?E * </form> * </pre></code> * <h5>validation.xml?v<var>vf</h5> * <table border="1"> * <tr> * <td><center><b><code>var-name</code></b></center></td> * <td><center><b><code>var-value</code></b></center></td> * <td><center><b>K?{?</b></center></td> * <td><center><b>Tv</b></center></td> * </tr> * <tr> * <td> <code>integerLength</code> </td> * <td> ??? </td> * <td> <code>false</code> </td> * <td>?????A<code>isAccordedInteger</code>w * ?Aw???s?B??A?l ??A??s?B</td> * </tr> * <tr> * <td> <code>scale</code> </td> * <td> ??? </td> * <td> <code>false</code> </td> * <td>??l???A<code>isAccordedScale</code>w * ?Aw???s?B??A?l ??A??s?B</td> * </tr> * <tr> * <td> <code>isAccordedInteger</code> </td> * <td> ???v`FbN </td> * <td> <code>false</code> </td> * <td> <code>true</code>w?A???v`FbN ?s?B??A<code>true</code>O? * ?`FbN?B</td> * </tr> * <tr> * <td> <code>isAccordedScale</code> </td> * <td> ???v`FbN </td> * <td> <code>false</code> </td> * <td> <code>true</code>w?A???v`FbN ?s?B??A<code>true</code>O? * ?`FbN?B</td> * </tr> * </table> * * @param bean * ??IuWFNg * @param va * StrutspValidatorAction * @param field * tB?[hIuWFNg * @param errors * ActionMessages ANVG?[ * @param validator * ValidatorCX^X * @param request * HTTPNGXg * @return l? <code>true</code> */ public static boolean validateNumber(Object bean, ValidatorAction va, Field field, ActionMessages errors, Validator validator, HttpServletRequest request) { // beannull?AG?[?O?o?Atruep?B if (bean == null) { log.error("bean is null."); return true; } // ??? String integerLength = field.getVarValue("integerLength"); // ??? String scaleStr = field.getVarValue("scale"); // ???v`FbN String isAccordedInteger = field.getVarValue("isAccordedInteger"); // ???v`FbN String isAccordedScale = field.getVarValue("isAccordedScale"); String value = null; if (isString(bean)) { value = (String) bean; } else { value = ValidatorUtils.getValueAsString(bean, field.getProperty()); } // ?lnull?Atruep if (GenericValidator.isBlankOrNull(value)) { return true; } char[] chars = value.toCharArray(); for (int i = 0; i < chars.length; i++) { if (!isHankaku(chars[i])) { errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } } // ???w???A??`FbN?s if (GenericValidator.isInt(integerLength)) { try { BigDecimal bd = new BigDecimal(value); // ???l?o BigInteger bi = bd.toBigInteger().abs(); // ??? int length = bi.toString().length(); // validation.xmlw? int checkLength = Integer.valueOf(integerLength).intValue(); // ?I?[o?Afalsep if (length > checkLength) { errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } // vw if (isAccordedInteger != null && "true".equals(isAccordedInteger)) { // ?sv?Afalsep if (length != checkLength) { errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } } } catch (NumberFormatException nfe) { // ?l^?Afalsep errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } } // ???w???A??`FbN?s if (GenericValidator.isInt(scaleStr)) { int scale = 0; int checkScale = 0; try { BigDecimal bd = new BigDecimal(value); scale = bd.scale(); // validation.xmlw? checkScale = Integer.valueOf(scaleStr).intValue(); } catch (NumberFormatException e) { // ?l^?Afalsep errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } // ?I?[o?Afalsep if (scale > checkScale) { errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } // vw if (isAccordedScale != null && "true".equals(isAccordedScale)) { // ?sv?Afalsep if (scale != checkScale) { errors.add(field.getKey(), Resources.getActionMessage(validator, request, va, field)); return false; } } } return true; }
From source file:org.kuali.coeus.propdev.impl.print.NIHResearchAndRelatedXmlStream.java
private BigInteger getNSFProjectDuration(DevelopmentProposal developmentProposal) { BigInteger projectDuration = null; if (developmentProposal.getRequestedEndDateInitial() != null && developmentProposal.getRequestedStartDateInitial() != null) { BigDecimal months = getMonthsBetweenDates(developmentProposal.getRequestedStartDateInitial(), developmentProposal.getRequestedEndDateInitial()); projectDuration = months.toBigInteger(); }//w w w . j a v a 2s.co m return projectDuration; }
From source file:uk.ac.ebi.arrayexpress.utils.saxon.search.AbstractIndexEnvironment.java
public Document processEntryIndex(Object node, Configuration config, XPathQueryService service, Map<String, XPathExpression> fieldXpe) throws Exception { Document luceneDoc = new Document(); XPath xp = new XPathEvaluator(config); for (FieldInfo field : fields.values()) { try {//from w w w .ja va 2s .c om if (!field.process) { List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); for (Object v : values) { if ("integer".equals(field.type)) { addIntIndexField(luceneDoc, field.name, v, field.shouldStore, field.shouldSort); } else if ("date".equals(field.type)) { // todo: // addDateIndexField(d, // field.name, // v); logger.error("Date fields are not supported yet, field [{}] will not be created", field.name); } else if ("boolean".equals(field.type)) { addBooleanIndexField(luceneDoc, field.name, v, field.shouldSort); } else { addIndexField(luceneDoc, field.name, v, field.shouldAnalyze, field.shouldStore, field.shouldSort); } } } else { if (field.name.equalsIgnoreCase("attributes")) { // implement here the biosamples // database sample attributes // logic // TODO: rpe // logger.debug("There is A special treatment for this field->" // + field.name); List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); for (Iterator iterator = values.iterator(); iterator.hasNext();) { Object object = (Object) iterator.next(); // logger.debug("attributes->" + object); String valClass = (String) fieldXpe.get("attributeName").evaluate(object, XPathConstants.STRING); //TODO: document this on trac and on website documentations help valClass = valClass.replace(" ", "_").toLowerCase(); //valClass=valClass.toLowerCase(); String valType = (String) fieldXpe.get("attributeType").evaluate(object, XPathConstants.STRING); String valValue = (String) fieldXpe.get("attributeValue").evaluate(object, XPathConstants.STRING); if (!valType.equalsIgnoreCase("integer") && !valType.equalsIgnoreCase("real")) { //TODO: change this value valValue = valValue.substring(0, Math.min(valValue.length(), 25)); addIndexField(luceneDoc, "attributes", "=" + valClass + "= " + valValue, true, false, true); } else { valValue = valValue.trim(); int val = 0; if (valValue == null || valValue.equalsIgnoreCase("") || valValue.equalsIgnoreCase("NaN")) { valValue = "0"; } BigDecimal num = new BigDecimal(valValue); num = num.multiply(new BigDecimal(100)); int taux = num.toBigInteger().intValue(); valValue = String.format("%07d", taux); //I need to mantain the spaces for lucene consider different words addIndexField(luceneDoc, "attributes", "=" + valClass + "= " + valValue, true, false, true); } // logger.debug("@class->" + valClass); // logger.debug("@type->" + valType); // logger.debug("text->" + valValue); } } else { // logger.debug("There is NO special treatment for this field->" // + field.name); } } } catch (XPathExpressionException x) { String xmlError = PrintUtils.printNodeInfo((NodeInfo) node, config); logger.error("Field being processed->[{}]", field.name); xmlError = "##FIELD BEING PROCESSED##->" + field.name + "\n" + xmlError; logger.error("XPathExpressionException->[{}]", x.getMessage()); logger.error("Caught an exception while indexing expression [" + field.path + "] for document [" + ((NodeInfo) node).getStringValue().substring(0, 20) + "...]", x); throw new Exception("XPathExpressionException Xml:" + xmlError, x); } catch (Exception xe) { String xmlError = PrintUtils.printNodeInfo((NodeInfo) node, config); logger.error("Generic Exception->[{}]", xe.getMessage()); throw new Exception("Generic Exception Xml:" + xmlError, xe); } } return luceneDoc; }
From source file:org.mifos.clientportfolio.loan.ui.LoanAccountFormBean.java
@edu.umd.cs.findbugs.annotations.SuppressWarnings(value = {
"SIC_INNER_SHOULD_BE_STATIC_ANON" }, justification = "")
public void validateEnterAccountDetailsStep(ValidationContext context) {
MessageContext messageContext = context.getMessageContext();
Errors errors = validator.checkConstraints(this);
// handle data binding errors that may of occurred
if (messageContext.hasErrorMessages()) {
Message[] errorMessages = messageContext.getMessagesByCriteria(new MessageCriteria() {
@Override// w ww.ja va 2s .c om
public boolean test(@SuppressWarnings("unused") Message message) {
return true;
}
});
messageContext.clearMessages();
for (Message message : errorMessages) {
handleDataMappingError(errors, message);
}
}
if (this.glimApplicable) {
int index = 0;
int selectedCount = 0;
for (Boolean clientSelected : this.clientSelectForGroup) {
if (clientSelected != null && clientSelected.booleanValue()) {
Number clientAmount = this.clientAmount[index];
if (clientAmount == null
|| exceedsMinOrMax(clientAmount, Integer.valueOf(1), this.maxAllowedAmount)) {
String defaultErrorMessage = "Please specify valid Amount.";
rejectGlimClientAmountField(index + 1, errors, defaultErrorMessage);
}
if (clientAmount != null) {
BigDecimal amountAsDecimal = new BigDecimal(clientAmount.toString()).stripTrailingZeros();
int places = amountAsDecimal.scale();
if (places > this.digitsAfterDecimalForMonetaryAmounts) {
String defaultErrorMessage = "The number of digits after the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.client.amount.digitsAfterDecimal.invalid",
new Object[] { index + 1, this.digitsAfterDecimalForMonetaryAmounts });
}
int digitsBefore = amountAsDecimal.toBigInteger().toString().length();
if (digitsBefore > this.digitsBeforeDecimalForMonetaryAmounts) {
String defaultErrorMessage = "The number of digits before the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.client.amount.digitsBeforeDecimal.invalid",
new Object[] { index + 1, this.digitsBeforeDecimalForMonetaryAmounts });
}
}
// check error message of loan purpose for each client when its mandatory..
Integer clientLoanPurposeId = this.clientLoanPurposeId[index];
if (this.purposeOfLoanMandatory && isInvalidSelection(clientLoanPurposeId)) {
errors.rejectValue("clientLoanPurposeId", "loanAccountFormBean.glim.purposeOfLoan.invalid",
new Object[] { index + 1 }, "Please specify loan purpose.");
this.clientLoanPurposeId[index] = 0;
} else {
// needed so attempt in freemarker(ftl) to display loan purpose doesnt fall over.
if (clientLoanPurposeId == null) {
this.clientLoanPurposeId[index] = 0;
}
}
selectedCount++;
} else {
Number clientAmount = this.clientAmount[index];
Integer clientLoanPurposeId = this.clientLoanPurposeId[index];
if (clientAmount != null || clientLoanPurposeId != null) {
String defaultErrorMessage = "You have entered details for a member you have not selected. Select the checkbox in front of the member's name in order to include him or her in the loan.";
rejectUnselectedGlimClientAmountField(index + 1, errors, defaultErrorMessage);
}
}
index++;
}
if (selectedCount < 2) {
String defaultErrorMessage = "Not enough clients for group loan.";
rejectGroupLoanWithTooFewClients(errors, defaultErrorMessage);
}
}
if (this.amount == null || exceedsMinOrMax(this.amount, this.minAllowedAmount, this.maxAllowedAmount)) {
String defaultErrorMessage = "Please specify valid Amount.";
if (glimApplicable) {
defaultErrorMessage = "The sum of the amounts specified for each member is outside the allowable total amount for this loan product.";
rejectGlimTotalAmountField(errors, defaultErrorMessage);
} else {
rejectAmountField(errors, defaultErrorMessage);
}
}
if (this.amount != null) {
BigDecimal amountAsDecimal = new BigDecimal(this.amount.toString()).stripTrailingZeros();
int places = amountAsDecimal.scale();
if (places > this.digitsAfterDecimalForMonetaryAmounts) {
String defaultErrorMessage = "The number of digits after the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.amount.digitsAfterDecimal.invalid",
new Object[] { this.digitsAfterDecimalForMonetaryAmounts });
}
int digitsBefore = amountAsDecimal.toBigInteger().toString().length();
if (digitsBefore > this.digitsBeforeDecimalForMonetaryAmounts) {
String defaultErrorMessage = "The number of digits before the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.amount.digitsBeforeDecimal.invalid",
new Object[] { this.digitsBeforeDecimalForMonetaryAmounts });
}
}
if (this.interestRate == null
|| exceedsMinOrMax(this.interestRate, this.minAllowedInterestRate, this.maxAllowedInterestRate)) {
String defaultErrorMessage = "Please specify valid Interest rate.";
rejectInterestRateField(errors, defaultErrorMessage);
}
if (this.interestRate != null) {
BigDecimal interestRateAsDecimal = new BigDecimal(this.interestRate.toString()).stripTrailingZeros();
int places = interestRateAsDecimal.scale();
if (places > this.digitsAfterDecimalForInterest) {
String defaultErrorMessage = "The number of digits after the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.digitsAfterDecimalForInterest.invalid",
new Object[] { this.digitsAfterDecimalForInterest });
}
int digitsBefore = interestRateAsDecimal.toBigInteger().toString().length();
if (digitsBefore > this.digitsBeforeDecimalForInterest) {
String defaultErrorMessage = "The number of digits before the decimal separator exceeds the allowed number.";
rejectInterestRateFieldValue(errors, defaultErrorMessage,
"loanAccountFormBean.digitsBeforeDecimalForInterest.invalid",
new Object[] { this.digitsBeforeDecimalForInterest });
}
}
if (this.numberOfInstallments == null || exceedsMinOrMax(this.numberOfInstallments,
this.minNumberOfInstallments, this.maxNumberOfInstallments)) {
String defaultErrorMessage = "Please specify valid number of installments.";
rejectNumberOfInstallmentsField(errors, defaultErrorMessage);
}
if (this.graceDuration == null || this.graceDuration.intValue() < 0) {
if (!errors.hasFieldErrors("graceDuration")) {
String defaultErrorMessage = "Please specify valid Grace period for repayments. Grace period should be a value less than "
+ numberOfInstallments.intValue() + ".";
rejectGraceDurationField(errors, defaultErrorMessage);
}
} else {
if (this.graceDuration.intValue() > this.maxGraceDuration.intValue()) {
String defaultErrorMessage = "The Grace period cannot be greater than in loan product definition.";
errors.rejectValue("graceDuration", "loanAccountFormBean.gracePeriodDuration.invalid",
defaultErrorMessage);
}
if (this.numberOfInstallments != null
&& (this.graceDuration.intValue() >= this.numberOfInstallments.intValue())) {
String defaultErrorMessage = "Grace period for repayments must be less than number of loan installments.";
errors.rejectValue("graceDuration",
"loanAccountFormBean.gracePeriodDurationInRelationToInstallments.invalid",
defaultErrorMessage);
}
}
if (dateValidator == null) {
dateValidator = new DateValidator();
}
if (!dateValidator.formsValidDate(this.disbursementDateDD, this.disbursementDateMM,
this.disbursementDateYY)) {
String defaultErrorMessage = "Please specify valid disbursal date.";
rejectDisbursementDateField(errors, defaultErrorMessage, "disbursementDateDD",
"loanAccountFormBean.DisbursalDate.invalid", "");
} else {
LocalDate validDate = new DateTime().withDate(disbursementDateYY.intValue(),
disbursementDateMM.intValue(), disbursementDateDD.intValue()).toLocalDate();
org.mifos.platform.validations.Errors disbursementDateErrors = new org.mifos.platform.validations.Errors();
if (this.redoLoanAccount) {
disbursementDateErrors = loanDisbursementDateValidationServiceFacade
.validateLoanWithBackdatedPaymentsDisbursementDate(validDate, customerId, productId);
} else {
disbursementDateErrors = loanDisbursementDateValidationServiceFacade
.validateLoanDisbursementDate(validDate, customerId, productId);
}
for (ErrorEntry entry : disbursementDateErrors.getErrorEntries()) {
String defaultErrorMessage = "The disbursal date is invalid.";
rejectDisbursementDateField(errors, defaultErrorMessage, "disbursementDateDD", entry.getErrorCode(),
entry.getArgs().get(0));
}
}
if (this.sourceOfFundsMandatory && isInvalidSelection(this.fundId)) {
errors.rejectValue("fundId", "loanAccountFormBean.SourceOfFunds.invalid",
"Please specify source of funds.");
}
if (this.externalIdMandatory && StringUtils.isBlank(this.externalId)) {
errors.rejectValue("externalId", "loanAccountFormBean.externalid.invalid",
"Please specify required external id.");
}
if (!this.glimApplicable && this.purposeOfLoanMandatory && isInvalidSelection(this.loanPurposeId)) {
errors.rejectValue("loanPurposeId", "loanAccountFormBean.PurposeOfLoan.invalid",
"Please specify loan purpose.");
}
validateAdministrativeAndAdditionalFees(errors);
if (this.repaymentScheduleIndependentOfCustomerMeeting) {
if (isInvalidRecurringFrequency(this.repaymentRecursEvery)) {
errors.rejectValue("repaymentRecursEvery", "loanAccountFormBean.repaymentDay.recursEvery.invalid",
"Please specify a valid recurring frequency for repayment day.");
}
if (this.weekly) {
if (isInvalidDayOfWeekSelection()) {
errors.rejectValue("repaymentDayOfWeek",
"loanAccountFormBean.repaymentDay.weekly.dayOfWeek.invalid",
"Please select a day of the week for repayment day.");
}
} else if (this.monthly) {
if (this.monthlyDayOfMonthOptionSelected) {
if (isInvalidDayOfMonthEntered()) {
errors.rejectValue("repaymentDayOfMonth",
"loanAccountFormBean.repaymentDay.monthly.dayOfMonth.invalid",
"Please select a day of the month for repayment day.");
}
} else if (this.monthlyWeekOfMonthOptionSelected) {
if (isInvalidWeekOfMonthSelection()) {
errors.rejectValue("repaymentWeekOfMonth",
"loanAccountFormBean.repaymentDay.monthly.weekOfMonth.invalid",
"Please select a week of the month for repayment day.");
}
if (isInvalidDayOfWeekSelection()) {
errors.rejectValue("repaymentDayOfWeek",
"loanAccountFormBean.repaymentDay.monthly.dayOfWeek.invalid",
"Please select a day of the week for repayment day.");
}
}
}
if (this.variableInstallmentsAllowed) {
if (this.selectedFeeId != null) {
for (Number feeId : this.selectedFeeId) {
if (feeId != null) {
VariableInstallmentWithFeeValidationResult result = variableInstallmentsFeeValidationServiceFacade
.validateFeeCanBeAppliedToVariableInstallmentLoan(feeId.longValue());
if (!result.isFeeCanBeAppliedToVariableInstallmentLoan()) {
errors.rejectValue("selectedFeeId",
"loanAccountFormBean.additionalfees.variableinstallments.invalid",
new String[] { result.getFeeName() },
"This type of fee cannot be applied to loan with variable installments.");
}
}
}
}
int defaultFeeIndex = 0;
if (this.defaultFeeId != null) {
for (Number feeId : this.defaultFeeId) {
if (feeId != null) {
Boolean feeSelectedForRemoval = this.defaultFeeSelected[defaultFeeIndex];
if (feeSelectedForRemoval == null || !feeSelectedForRemoval) {
VariableInstallmentWithFeeValidationResult result = variableInstallmentsFeeValidationServiceFacade
.validateFeeCanBeAppliedToVariableInstallmentLoan(feeId.longValue());
if (!result.isFeeCanBeAppliedToVariableInstallmentLoan()) {
errors.rejectValue("selectedFeeId",
"loanAccountFormBean.defaultfees.variableinstallments.invalid",
new String[] { result.getFeeName() },
"This type of fee cannot be applied to loan with variable installments.");
}
}
}
defaultFeeIndex++;
}
}
}
}
if (errors.hasErrors()) {
for (FieldError fieldError : errors.getFieldErrors()) {
MessageBuilder builder = new MessageBuilder().error().source(fieldError.getField())
.codes(fieldError.getCodes()).defaultText(fieldError.getDefaultMessage())
.args(fieldError.getArguments());
messageContext.addMessage(builder.build());
}
}
}
From source file:org.mifos.clientportfolio.loan.ui.LoanAccountFormBean.java
private void validateAdministrativeAndAdditionalFees(Errors errors) { Set<Integer> feeSet = new HashSet<Integer>(); if (this.selectedFeeId != null) { boolean noDuplicateExists = true; for (Number feeId : this.selectedFeeId) { if (feeId != null) { noDuplicateExists = feeSet.add(feeId.intValue()); if (!noDuplicateExists) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.additionalfees.invalid", "Multiple instances of the same fee are not allowed."); break; }// w w w . ja v a 2s . c o m } } } int defaultFeeIndex = 0; if (this.defaultFeeId != null) { for (Number feeId : this.defaultFeeId) { if (feeId != null) { Boolean feeSelectedForRemoval = this.defaultFeeSelected[defaultFeeIndex]; if (feeSelectedForRemoval == null || !feeSelectedForRemoval) { Number amountOrRate = this.defaultFeeAmountOrRate[defaultFeeIndex]; if (amountOrRate == null) { errors.rejectValue("defaultFeeId", "loanAccountFormBean.defaultfees.amountOrRate.invalid", "Please specify fee amount for administrative fee " + Integer.valueOf(defaultFeeIndex + 1).toString()); } else { FeeDto selectedFee = findDefaultFee(feeId.intValue()); if (selectedFee.isRateBasedFee()) { // maybe check based on 'interest rate' decimals? } else { BigDecimal feeAmountAsDecimal = new BigDecimal(amountOrRate.toString()) .stripTrailingZeros(); int places = feeAmountAsDecimal.scale(); if (places > this.digitsAfterDecimalForMonetaryAmounts) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.defaultfees.amountOrRate.digits.after.decimal.invalid", new Object[] { Integer.valueOf(defaultFeeIndex + 1), this.digitsAfterDecimalForMonetaryAmounts }, "Please specify fee amount for additional fee " + Integer.valueOf(defaultFeeIndex + 1).toString()); } int digitsBefore = feeAmountAsDecimal.toBigInteger().toString().length(); if (digitsBefore > this.digitsBeforeDecimalForMonetaryAmounts) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.defaultfees.amountOrRate.digits.before.decimal.invalid", new Object[] { Integer.valueOf(defaultFeeIndex + 1), this.digitsAfterDecimalForMonetaryAmounts }, "Please specify fee amount for additional fee " + Integer.valueOf(defaultFeeIndex + 1).toString()); } } } } } defaultFeeIndex++; } } int additionalFeeIndex = 0; if (this.selectedFeeId != null) { for (Number feeId : this.selectedFeeId) { if (feeId != null) { Number amountOrRate = this.selectedFeeAmount[additionalFeeIndex]; if (amountOrRate == null) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.additionalfees.amountOrRate.invalid", "Please specify fee amount for additional fee " + Integer.valueOf(additionalFeeIndex + 1).toString()); } else { int digitsAllowedBefore, digitsAllowedAfter; if (findAdditionalFee(feeId.intValue()).isRateBasedFee()) { digitsAllowedBefore = this.digitsBeforeDecimalForInterest; digitsAllowedAfter = this.digitsAfterDecimalForInterest; } else { digitsAllowedBefore = this.digitsBeforeDecimalForMonetaryAmounts; digitsAllowedAfter = this.digitsAfterDecimalForMonetaryAmounts; } BigDecimal feeAmountAsDecimal = new BigDecimal(amountOrRate.toString()) .stripTrailingZeros(); int places = feeAmountAsDecimal.scale(); if (places > digitsAllowedAfter) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.additionalfees.amountOrRate.digits.after.decimal.invalid", new Object[] { Integer.valueOf(additionalFeeIndex + 1), digitsAllowedAfter }, "Please specify fee amount for additional fee " + Integer.valueOf(additionalFeeIndex + 1).toString()); } int digitsBefore = feeAmountAsDecimal.toBigInteger().toString().length(); if (digitsBefore > digitsAllowedBefore) { errors.rejectValue("selectedFeeId", "loanAccountFormBean.additionalfees.amountOrRate.digits.before.decimal.invalid", new Object[] { Integer.valueOf(additionalFeeIndex + 1), digitsAllowedBefore }, "Please specify fee amount for additional fee " + Integer.valueOf(additionalFeeIndex + 1).toString()); } } } additionalFeeIndex++; } } }
From source file:uk.ac.ebi.fg.biostudies.utils.saxon.search.AbstractIndexEnvironment.java
public void indexFromXmlDB_FACETS(String indexLocationDirectory, String dbHost, int dbPort, String dbPassword, String dbName) throws Exception { int countNodes = 0; String driverXml = ""; String connectionString = ""; Collection coll;/*from w ww . j a v a 2 s. c om*/ IndexWriter w = null; Map<String, XPathExpression> fieldXpe = new HashMap<String, XPathExpression>(); try { Directory indexTempDirectory = FSDirectory.open(new File(indexLocationDirectory, indexId)); w = createIndex(indexTempDirectory, indexAnalyzer); Directory taxDir = FSDirectory.open(new File(indexLocationDirectory + "Facets", indexId)); DirectoryTaxonomyWriter taxoWriter = new DirectoryTaxonomyWriter(taxDir); CategoryDocumentBuilder docBuilder = new CategoryDocumentBuilder(taxoWriter); HierarchicalConfiguration connsConf = (HierarchicalConfiguration) Application.getInstance() .getPreferences().getConfSubset("bs.xmldatabase"); if (null != connsConf) { // TODO: rpe use the component XmlDatabasePooling driverXml = connsConf.getString("driver"); // I will use the connectionString that was passed by parameter // (in several parameters) connectionString = connsConf.getString("base") + "://" + dbHost + ":" + dbPort + "/" + dbName; } else { logger.error("bs.xmldatabase Configuration is missing!!"); } // I cannot register this database again (this is already registered // on XmlDbConnectionPool Component - // java.nio.channels.OverlappingFileLockException // c = Class.forName(driverXml); // db = (Database) c.newInstance(); // DatabaseManager.registerDatabase(db); logger.debug("connectionString->" + connectionString); coll = DatabaseManager.getCollection(connectionString); XPathQueryService service = (XPathQueryService) coll.getService("XPathQueryService", "1.0"); DocumentInfo source = null; // Loop through all result items // collect all the fields data Configuration config = ((SaxonEngine) Application.getAppComponent("SaxonEngine")).trFactory .getConfiguration(); XPath xp = new XPathEvaluator(config); // XPathExpression xpe = xp.compile(this.env.indexDocumentPath); for (FieldInfo field : fields.values()) { fieldXpe.put(field.name, xp.compile(field.path)); logger.debug("Field Path->[{}]", field.path); } // the xmldatabase is not very correct and have memory problem for // queires with huge results, so its necessary to implement our own // iteration mechanism // // // I will collect all the results // ResourceSet set = service.query(this.env.indexDocumentPath); // //TODO rpe // //ResourceSet set = service.query("//Sample"); // logger.debug("Number of results->" + set.getSize()); // long numberResults = set.getSize(); long numberResults = 0; ResourceSet set = service.query("count(" + indexDocumentPath + ")"); if (set.getIterator().hasMoreResources()) { numberResults = Integer.parseInt((String) set.getIterator().nextResource().getContent()); } logger.debug("Number of results->" + numberResults); long pageSizeDefault = 50000; // the samplegroup cannot be big otherwise I will obtain a memory // error ... but the sample must b at least one million because the // paging queries are really slow - we need to balance it // (for samples 1million, for samplegroup 50000) if (numberResults > 1000000) { pageSizeDefault = 1000000; } long pageNumber = 1; int count = 0; Map<String, AttsInfo[]> cacheAtt = new HashMap<String, AttsInfo[]>(); Map<String, XPathExpression> cacheXpathAtt = new HashMap<String, XPathExpression>(); Map<String, XPathExpression> cacheXpathAttValue = new HashMap<String, XPathExpression>(); while ((pageNumber * pageSizeDefault) <= (numberResults + pageSizeDefault - 1)) { // while ((pageNumber<=1)) { // calculate the last hit long pageInit = (pageNumber - 1) * pageSizeDefault + 1; long pageSize = (pageNumber * pageSizeDefault < numberResults) ? pageSizeDefault : (numberResults - pageInit + 1); service = (XPathQueryService) coll.getService("XPathQueryService", "1.0"); // xquery paging using subsequence function long time = System.nanoTime(); // /set = // service.query("for $x in(/Biosamples/SampleGroup/Sample/@id) return string($x)"); set = service.query("for $x in(subsequence(" + indexDocumentPath + "/@id," + pageInit + "," + pageSize + ")) return string($x)"); // logger.debug("Number of results of page->" + set.getSize()); double ms = (System.nanoTime() - time) / 1000000d; logger.info("Query XMLDB took ->[{}]", ms); ResourceIterator iter = set.getIterator(); XPath xp2; XPathExpression xpe2; List documentNodes; StringReader reader; // cache of distinct attributes fora each sample group while (iter.hasMoreResources()) { count++; logger.debug("its beeing processed the number ->" + count); String idSample = (String) iter.nextResource().getContent(); logger.debug("idSample->" + idSample); // I need to get the sample ResourceSet setid = service.query(indexDocumentPath + "[@id='" + idSample + "']"); // System.out.println("/Biosamples/SampleGroup/Sample[@id='" // + idSample + "']"); ResourceIterator iterid = setid.getIterator(); List<CategoryPath> sampleCategories = null; while (iterid.hasMoreResources()) { // System.out.println(""); // /xml=(String) iterid.nextResource().getContent(); // /xml=(String) iter.nextResource().getContent(); // logger.debug("xml->"+xml); // /reader = new StringReader(xml); StringBuilder xml = new StringBuilder(); xml.append((String) iterid.nextResource().getContent()); // logger.debug(xml.toString()); reader = new StringReader(xml.toString()); source = config.buildDocument(new StreamSource(reader)); // logger.debug("XML DB->[{}]", // PrintUtils.printNodeInfo((NodeInfo) source, config)); Document d = new Document(); xp2 = new XPathEvaluator(source.getConfiguration()); int position = indexDocumentPath.lastIndexOf("/"); ; String pathRoot = ""; if (position != -1) { pathRoot = indexDocumentPath.substring(position); } else { pathRoot = indexDocumentPath; } // logger.debug("PathRoot->[{}]",pathRoot); xpe2 = xp2.compile(pathRoot); // TODO rpe // xpe2 = xp2.compile("/Sample"); documentNodes = (List) xpe2.evaluate(source, XPathConstants.NODESET); for (Object node : documentNodes) { // logger.debug("XML DB->[{}]",PrintUtils.printNodeInfo((NodeInfo)node,config)); for (FieldInfo field : fields.values()) { try { // Configuration // config=doc.getConfiguration(); // I Just have to calculate the Xpath if (!field.process) { List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); // logger.debug("Field->[{}] values-> [{}]", // field.name, // values.toString()); for (Object v : values) { if ("integer".equals(field.type)) { addIntIndexField(d, field.name, v, field.shouldStore, field.shouldSort); // Just to test I will put here // one facet for the samples if (field.name.equalsIgnoreCase("samples")) { System.out.println("Value-->" + v.toString()); sampleCategories = new ArrayList<CategoryPath>(); sampleCategories.add(new CategoryPath("samples", v.toString())); } } else if ("date".equals(field.type)) { // todo: addDateIndexField(d, // field.name, // v); logger.error( "Date fields are not supported yet, field [{}] will not be created", field.name); } else if ("boolean".equals(field.type)) { addBooleanIndexField(d, field.name, v, field.shouldSort); } else { addIndexField(d, field.name, v, field.shouldAnalyze, field.shouldStore, field.shouldSort); } } } else { if (field.name.equalsIgnoreCase("attributes")) { // implement here the biosamples // database sample attributes logic // TODO: rpe // logger.debug("There is A special treatment for this field->" // + field.name); List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); // XPathExpression // classAtt=xp.compile("@class"); // XPathExpression // typeAtt=xp.compile("@dataType"); // XPathExpression // valueAtt=xp.compile("value"); String groupId = (String) fieldXpe.get("samplegroup").evaluate(node, XPathConstants.STRING); String id = (String) fieldXpe.get("accession").evaluate(node, XPathConstants.STRING); // logger.debug(groupId+"$$$" + id); // logger.debug("Field->[{}] values-> [{}]", // field.name, // values.toString()); AttsInfo[] attsInfo = null; if (cacheAtt.containsKey(groupId)) { attsInfo = cacheAtt.get(groupId); } else { logger.debug("No exists cache for samplegroup->" + groupId); // ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute[@dataType!='INTEGER']/replace(@class,' ', '-'))"); // /ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute/replace(@class,' ', '-'))"); // /ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute/@class)"); ResourceSet setAtt = service .query("data(/Biosamples/SampleGroup[@id='" + groupId + "']/SampleAttributes/attribute/@class)"); // logger.debug("->" // + // "/Biosamples/SampleGroup[@id='" // + groupId + // "']/SampleAttributes/attribute/@class"); ResourceIterator resAtt = setAtt.getIterator(); int i = 0; attsInfo = new AttsInfo[(int) setAtt.getSize()]; while (resAtt.hasMoreResources()) { String classValue = (String) resAtt.nextResource().getContent(); // logger.debug("->" // + classValue); // need to use this because // of the use of quotes in // the name of the classes String classValueWitoutQuotes = classValue.replaceAll("\"", "\"\""); // logger.debug("Class value->" // + classValue); XPathExpression xpathAtt = null; XPathExpression xpathAttValue = null; if (cacheXpathAtt.containsKey(classValue)) { xpathAtt = cacheXpathAtt.get(classValue); xpathAttValue = cacheXpathAttValue.get(classValue); } else { xpathAtt = xp.compile("./attribute[@class=\"" + classValueWitoutQuotes + "\"]/@dataType"); xpathAttValue = xp.compile( "attribute[@class=\"" + classValueWitoutQuotes + "\"]/value/text()[last()]"); // logger.debug("attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]//value/text()"); // //xpathAttValue=xp.compile("./attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]/value[1]/text()"); // logger.debug("./attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]/value[1]/text()"); cacheXpathAtt.put(classValue, xpathAtt); cacheXpathAttValue.put(classValue, xpathAttValue); } // this doesnt work when the // first sample of sample // group doens have all the // attributes // im using \" becuse there // are some attributes thas // has ' on the name!!! // /ResourceSet setAttType = // service.query("string((/Biosamples/SampleGroup[@id='" // + groupId // +"']/Sample/attribute[@class=replace(\"" // + classValueWitoutQuotes // + // "\",'-',' ')]/@dataType)[1])"); // /ResourceSet setAttType = // service.query("string(/Biosamples/SampleGroup[@id='" // + groupId // +"']/Sample/attribute[@class=\"" // + classValueWitoutQuotes // + "\"]/@dataType)"); ResourceSet setAttType = service .query("data(/Biosamples/SampleGroup[@id='" + groupId + "']/SampleAttributes/attribute[@class=\"" + classValueWitoutQuotes + "\"]/@dataType)"); String dataValue = (String) setAttType.getIterator() .nextResource().getContent(); // logger.debug("Data Type of " // + classValue + " ->" + // dataValue); // String // dataValue=(String)xpathAtt.evaluate(node, // XPathConstants.STRING); AttsInfo attsI = new AttsInfo(classValue, dataValue); // logger.debug("Atttribute->class" // + attsI.name + "->type->" // + attsI.type + "->i" + // i); attsInfo[i] = attsI; // logger.debug("distinct att->" // + value); // cacheAtt.put(groupId, // value); i++; } cacheAtt.put(groupId, attsInfo); // distinctAtt=cacheAtt.get(groupId); // logger.debug("Already exists->" // + distinctAtt); } int len = attsInfo.length; for (int i = 0; i < len; i++) { // logger.debug("$$$$$$->" + // attsInfo[i].name + "$$$$" + // attsInfo[i].type); if (!attsInfo[i].type.equalsIgnoreCase("integer") && !attsInfo[i].type.equalsIgnoreCase("real")) { XPathExpression valPath = cacheXpathAttValue .get(attsInfo[i].name); String val = (String) valPath.evaluate(node, XPathConstants.STRING); // logger.debug("$$$$$$->" + // "STRING->" + val + ""); addIndexField(d, (i + 1) + "", val, true, false, true); } else { XPathExpression valPath = cacheXpathAttValue .get(attsInfo[i].name); String valS = (String) valPath.evaluate(node, XPathConstants.STRING); valS = valS.trim(); // logger.debug("Integer->" // + valS); int val = 0; if (valS == null || valS.equalsIgnoreCase("") || valS.equalsIgnoreCase("NaN")) { valS = "0"; } // sort numbers as strings // logger.debug("class->" + // attsInfo[i].name // +"value->##"+ valS + // "##"); BigDecimal num = new BigDecimal(valS); num = num.multiply(new BigDecimal(100)); int taux = num.toBigInteger().intValue(); valS = String.format("%07d", taux); // logger.debug("Integer->" // + valS + "position->" // +(i+1)+"integer"); addIndexField(d, (i + 1) + "", valS, true, false, true); // addIntIndexField(d, // (i+1)+"integer", new // BigInteger(valS),false, // true); // } } } else { // logger.debug("There is NO special treatment for this field->" // + field.name); } } } catch (XPathExpressionException x) { String xmlError = PrintUtils.printNodeInfo((NodeInfo) node, config); logger.error("XML DB->[{}]", xmlError); logger.error("Caught an exception while indexing expression [" + field.path + "] for document [" + ((NodeInfo) source).getStringValue().substring(0, 20) + "...]", x); throw new Exception("Xml:" + xmlError, x); } } } documentNodes = null; source = null; reader = null; xml = null; countNodes++; // logger.debug("count->[{}]", countNodes); // facet tests docBuilder.setCategoryPaths(sampleCategories); docBuilder.build(d); addIndexDocument(w, d); } } logger.debug("until now it were processed->[{}]", pageNumber * pageSizeDefault); pageNumber++; if (coll != null) { try { // coll.close(); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } } set = null; } setCountDocuments(countNodes); // add metadata to the lucene index Map<String, String> map = new HashMap<String, String>(); map.put("numberDocs", Integer.toString(countNodes)); map.put("date", Long.toString(System.nanoTime())); // logger.debug(Application.getInstance().getComponent("XmlDbConnectionPool").getMetaDataInformation()); // I cannot call directly // getComponent("XmlDbConnectionPool").getMetaDataInformation(), // because I can be working in a did String dbInfo = ((XmlDbConnectionPool) Application.getInstance().getComponent("XmlDbConnectionPool")) .getDBInfo(dbHost, dbPort, dbPassword, dbName); map.put("DBInfo", dbInfo); // facet taxoWriter.commit(); taxoWriter.close(); commitIndex(w, map); } catch (Exception x) { logger.error("Caught an exception:", x); w.close(); throw x; } }
From source file:uk.ac.ebi.arrayexpress.utils.saxon.search.AbstractIndexEnvironment.java
public void indexFromXmlDB_FACETS(String indexLocationDirectory, String dbHost, int dbPort, String dbPassword, String dbName) throws Exception { int countNodes = 0; String driverXml = ""; String connectionString = ""; Collection coll;/*from ww w .ja v a 2 s . com*/ IndexWriter w = null; Map<String, XPathExpression> fieldXpe = new HashMap<String, XPathExpression>(); try { Directory indexTempDirectory = FSDirectory.open(new File(indexLocationDirectory, indexId)); w = createIndex(indexTempDirectory, indexAnalyzer); Directory taxDir = FSDirectory.open(new File(indexLocationDirectory + "Facets", indexId)); DirectoryTaxonomyWriter taxoWriter = new DirectoryTaxonomyWriter(taxDir); CategoryDocumentBuilder docBuilder = new CategoryDocumentBuilder(taxoWriter); HierarchicalConfiguration connsConf = (HierarchicalConfiguration) Application.getInstance() .getPreferences().getConfSubset("bs.xmldatabase"); if (null != connsConf) { // TODO: rpe use the component XmlDatabasePooling driverXml = connsConf.getString("driver"); // I will use the connectionString that was passed by parameter // (in several parameters) connectionString = connsConf.getString("base") + "://" + dbHost + ":" + dbPort + "/" + dbName; } else { logger.error("bs.xmldatabase Configuration is missing!!"); } // I cannot register this database again (this is already registered // on XmlDbConnectionPool Component - // java.nio.channels.OverlappingFileLockException // c = Class.forName(driverXml); // db = (Database) c.newInstance(); // DatabaseManager.registerDatabase(db); logger.debug("connectionString->" + connectionString); coll = DatabaseManager.getCollection(connectionString); XPathQueryService service = (XPathQueryService) coll.getService("XPathQueryService", "1.0"); DocumentInfo source = null; // Loop through all result items // collect all the fields data Configuration config = ((SaxonEngine) Application.getAppComponent("SaxonEngine")).trFactory .getConfiguration(); XPath xp = new XPathEvaluator(config); // XPathExpression xpe = xp.compile(this.env.indexDocumentPath); for (FieldInfo field : fields.values()) { fieldXpe.put(field.name, xp.compile(field.path)); logger.debug("Field Path->[{}]", field.path); } // the xmldatabase is not very correct and have memory problem for // queires with huge results, so its necessary to implement our own // iteration mechanism // // // I will collect all the results // ResourceSet set = service.query(this.env.indexDocumentPath); // //TODO rpe // //ResourceSet set = service.query("//Sample"); // logger.debug("Number of results->" + set.getSize()); // long numberResults = set.getSize(); long numberResults = 0; ResourceSet set = service.query("count(" + indexDocumentPath + ")"); if (set.getIterator().hasMoreResources()) { numberResults = Integer.parseInt((String) set.getIterator().nextResource().getContent()); } logger.debug("Number of results->" + numberResults); long pageSizeDefault = 50000; // the samplegroup cannot be big otherwise I will obtain a memory // error ... but the sample must b at least one million because the // paging queries are really slow - we need to balance it // (for samples 1million, for samplegroup 50000) if (numberResults > 1000000) { pageSizeDefault = 1000000; } long pageNumber = 1; int count = 0; Map<String, AttsInfo[]> cacheAtt = new HashMap<String, AttsInfo[]>(); Map<String, XPathExpression> cacheXpathAtt = new HashMap<String, XPathExpression>(); Map<String, XPathExpression> cacheXpathAttValue = new HashMap<String, XPathExpression>(); while ((pageNumber * pageSizeDefault) <= (numberResults + pageSizeDefault - 1)) { // while ((pageNumber<=1)) { // calculate the last hit long pageInit = (pageNumber - 1) * pageSizeDefault + 1; long pageSize = (pageNumber * pageSizeDefault < numberResults) ? pageSizeDefault : (numberResults - pageInit + 1); service = (XPathQueryService) coll.getService("XPathQueryService", "1.0"); // xquery paging using subsequence function long time = System.nanoTime(); // /set = // service.query("for $x in(/Biosamples/SampleGroup/Sample/@id) return string($x)"); set = service.query("for $x in(subsequence(" + indexDocumentPath + "/@id," + pageInit + "," + pageSize + ")) return string($x)"); // logger.debug("Number of results of page->" + set.getSize()); double ms = (System.nanoTime() - time) / 1000000d; logger.info("Query XMLDB took ->[{}]", ms); ResourceIterator iter = set.getIterator(); XPath xp2; XPathExpression xpe2; List documentNodes; StringReader reader; // cache of distinct attributes fora each sample group while (iter.hasMoreResources()) { count++; logger.debug("its beeing processed the number ->" + count); String idSample = (String) iter.nextResource().getContent(); logger.debug("idSample->" + idSample); // I need to get the sample ResourceSet setid = service.query(indexDocumentPath + "[@id='" + idSample + "']"); // System.out.println("/Biosamples/SampleGroup/Sample[@id='" // + idSample + "']"); ResourceIterator iterid = setid.getIterator(); List<CategoryPath> sampleCategories = null; while (iterid.hasMoreResources()) { // System.out.println(""); // /xml=(String) iterid.nextResource().getContent(); // /xml=(String) iter.nextResource().getContent(); // logger.debug("xml->"+xml); // /reader = new StringReader(xml); StringBuilder xml = new StringBuilder(); xml.append((String) iterid.nextResource().getContent()); // logger.debug(xml.toString()); reader = new StringReader(xml.toString()); source = config.buildDocument(new StreamSource(reader)); // logger.debug("XML DB->[{}]", // PrintUtils.printNodeInfo((NodeInfo) source, config)); Document d = new Document(); xp2 = new XPathEvaluator(source.getConfiguration()); int position = indexDocumentPath.lastIndexOf("/"); ; String pathRoot = ""; if (position != -1) { pathRoot = indexDocumentPath.substring(position); } else { pathRoot = indexDocumentPath; } // logger.debug("PathRoot->[{}]",pathRoot); xpe2 = xp2.compile(pathRoot); // TODO rpe // xpe2 = xp2.compile("/Sample"); documentNodes = (List) xpe2.evaluate(source, XPathConstants.NODESET); for (Object node : documentNodes) { // logger.debug("XML DB->[{}]",PrintUtils.printNodeInfo((NodeInfo)node,config)); for (FieldInfo field : fields.values()) { try { // Configuration // config=doc.getConfiguration(); // I Just have to calculate the Xpath if (!field.process) { List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); // logger.debug("Field->[{}] values-> [{}]", // field.name, // values.toString()); for (Object v : values) { if ("integer".equals(field.type)) { addIntIndexField(d, field.name, v, field.shouldStore, field.shouldSort); // Just to test I will put here // one facet for the samples if (field.name.equalsIgnoreCase("samples")) { System.out.println("Value-->" + v.toString()); sampleCategories = new ArrayList<CategoryPath>(); sampleCategories.add(new CategoryPath("samples", v.toString())); } } else if ("date".equals(field.type)) { // todo: addDateIndexField(d, // field.name, // v); logger.error( "Date fields are not supported yet, field [{}] will not be created", field.name); } else if ("boolean".equals(field.type)) { addBooleanIndexField(d, field.name, v, field.shouldSort); } else { addIndexField(d, field.name, v, field.shouldAnalyze, field.shouldStore, field.shouldSort); } } } else { if (field.name.equalsIgnoreCase("attributes")) { // implement here the biosamples // database sample attributes logic // TODO: rpe // logger.debug("There is A special treatment for this field->" // + field.name); List values = (List) fieldXpe.get(field.name).evaluate(node, XPathConstants.NODESET); // XPathExpression // classAtt=xp.compile("@class"); // XPathExpression // typeAtt=xp.compile("@dataType"); // XPathExpression // valueAtt=xp.compile("value"); String groupId = (String) fieldXpe.get("samplegroup").evaluate(node, XPathConstants.STRING); String id = (String) fieldXpe.get("accession").evaluate(node, XPathConstants.STRING); // logger.debug(groupId+"$$$" + id); // logger.debug("Field->[{}] values-> [{}]", // field.name, // values.toString()); AttsInfo[] attsInfo = null; if (cacheAtt.containsKey(groupId)) { attsInfo = cacheAtt.get(groupId); } else { logger.debug("No exists cache for samplegroup->" + groupId); // ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute[@dataType!='INTEGER']/replace(@class,' ', '-'))"); // /ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute/replace(@class,' ', '-'))"); // /ResourceSet setAtt = // service.query("distinct-values(/Biosamples/SampleGroup[@id='" // + groupId + // "']/Sample/attribute/@class)"); ResourceSet setAtt = service .query("data(/Biosamples/SampleGroup[@id='" + groupId + "']/SampleAttributes/attribute/@class)"); // logger.debug("->" // + // "/Biosamples/SampleGroup[@id='" // + groupId + // "']/SampleAttributes/attribute/@class"); ResourceIterator resAtt = setAtt.getIterator(); int i = 0; attsInfo = new AttsInfo[(int) setAtt.getSize()]; while (resAtt.hasMoreResources()) { String classValue = (String) resAtt.nextResource().getContent(); // logger.debug("->" // + classValue); // need to use this because // of the use of quotes in // the name of the classes String classValueWitoutQuotes = classValue.replaceAll("\"", "\"\""); // logger.debug("Class value->" // + classValue); XPathExpression xpathAtt = null; XPathExpression xpathAttValue = null; if (cacheXpathAtt.containsKey(classValue)) { xpathAtt = cacheXpathAtt.get(classValue); xpathAttValue = cacheXpathAttValue.get(classValue); } else { xpathAtt = xp.compile("./attribute[@class=\"" + classValueWitoutQuotes + "\"]/@dataType"); xpathAttValue = xp.compile( "attribute[@class=\"" + classValueWitoutQuotes + "\"]/value/text()[last()]"); // logger.debug("attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]//value/text()"); // //xpathAttValue=xp.compile("./attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]/value[1]/text()"); // logger.debug("./attribute[@class=\"" // + // classValueWitoutQuotes // + // "\"]/value[1]/text()"); cacheXpathAtt.put(classValue, xpathAtt); cacheXpathAttValue.put(classValue, xpathAttValue); } // this doesnt work when the // first sample of sample // group doens have all the // attributes // im using \" becuse there // are some attributes thas // has ' on the name!!! // /ResourceSet setAttType = // service.query("string((/Biosamples/SampleGroup[@id='" // + groupId // +"']/Sample/attribute[@class=replace(\"" // + classValueWitoutQuotes // + // "\",'-',' ')]/@dataType)[1])"); // /ResourceSet setAttType = // service.query("string(/Biosamples/SampleGroup[@id='" // + groupId // +"']/Sample/attribute[@class=\"" // + classValueWitoutQuotes // + "\"]/@dataType)"); ResourceSet setAttType = service .query("data(/Biosamples/SampleGroup[@id='" + groupId + "']/SampleAttributes/attribute[@class=\"" + classValueWitoutQuotes + "\"]/@dataType)"); String dataValue = (String) setAttType.getIterator() .nextResource().getContent(); // logger.debug("Data Type of " // + classValue + " ->" + // dataValue); // String // dataValue=(String)xpathAtt.evaluate(node, // XPathConstants.STRING); AttsInfo attsI = new AttsInfo(classValue, dataValue); // logger.debug("Atttribute->class" // + attsI.name + "->type->" // + attsI.type + "->i" + // i); attsInfo[i] = attsI; // logger.debug("distinct att->" // + value); // cacheAtt.put(groupId, // value); i++; } cacheAtt.put(groupId, attsInfo); // distinctAtt=cacheAtt.get(groupId); // logger.debug("Already exists->" // + distinctAtt); } int len = attsInfo.length; for (int i = 0; i < len; i++) { // logger.debug("$$$$$$->" + // attsInfo[i].name + "$$$$" + // attsInfo[i].type); if (!attsInfo[i].type.equalsIgnoreCase("integer") && !attsInfo[i].type.equalsIgnoreCase("real")) { XPathExpression valPath = cacheXpathAttValue .get(attsInfo[i].name); String val = (String) valPath.evaluate(node, XPathConstants.STRING); // logger.debug("$$$$$$->" + // "STRING->" + val + ""); addIndexField(d, (i + 1) + "", val, true, false, true); } else { XPathExpression valPath = cacheXpathAttValue .get(attsInfo[i].name); String valS = (String) valPath.evaluate(node, XPathConstants.STRING); valS = valS.trim(); // logger.debug("Integer->" // + valS); int val = 0; if (valS == null || valS.equalsIgnoreCase("") || valS.equalsIgnoreCase("NaN")) { valS = "0"; } // sort numbers as strings // logger.debug("class->" + // attsInfo[i].name // +"value->##"+ valS + // "##"); BigDecimal num = new BigDecimal(valS); num = num.multiply(new BigDecimal(100)); int taux = num.toBigInteger().intValue(); valS = String.format("%07d", taux); // logger.debug("Integer->" // + valS + "position->" // +(i+1)+"integer"); addIndexField(d, (i + 1) + "", valS, true, false, true); // addIntIndexField(d, // (i+1)+"integer", new // BigInteger(valS),false, // true); // } } } else { // logger.debug("There is NO special treatment for this field->" // + field.name); } } } catch (XPathExpressionException x) { String xmlError = PrintUtils.printNodeInfo((NodeInfo) node, config); logger.error("XML DB->[{}]", xmlError); logger.error("Caught an exception while indexing expression [" + field.path + "] for document [" + ((NodeInfo) source).getStringValue().substring(0, 20) + "...]", x); throw new Exception("Xml:" + xmlError, x); } } } documentNodes = null; source = null; reader = null; xml = null; countNodes++; // logger.debug("count->[{}]", countNodes); // facet tests docBuilder.setCategoryPaths(sampleCategories); docBuilder.build(d); addIndexDocument(w, d); } } logger.debug("until now it were processed->[{}]", pageNumber * pageSizeDefault); pageNumber++; if (coll != null) { try { // coll.close(); } catch (Exception e) { // TODO Auto-generated catch block e.printStackTrace(); } } set = null; } setCountDocuments(countNodes); // add metadata to the lucene index Map<String, String> map = new HashMap<String, String>(); map.put("numberDocs", Integer.toString(countNodes)); map.put("date", Long.toString(System.nanoTime())); // logger.debug(Application.getInstance().getComponent("XmlDbConnectionPool").getMetaDataInformation()); // I cannot call directly // getComponent("XmlDbConnectionPool").getMetaDataInformation(), // because I can be working in a did String dbInfo = ((XmlDbConnectionPool) Application.getInstance().getComponent("XmlDbConnectionPool")) .getDBInfo(dbHost, dbPort, dbPassword, dbName); map.put("DBInfo", dbInfo); // facet taxoWriter.commit(); taxoWriter.close(); commitIndex(w, map); } catch (Exception x) { logger.error("Caught an exception:", x); w.close(); throw x; } }