Example usage for java.lang Long intValue

List of usage examples for java.lang Long intValue

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Introduction

In this page you can find the example usage for java.lang Long intValue.

Prototype

public int intValue()

Source Link

Document

Returns the value of this Long as an int after a narrowing primitive conversion.

Usage

From source file:com.evolveum.midpoint.repo.sql.util.RUtil.java

public static Integer toInteger(Long l) {
    if (l == null) {
        return null;
    }/*  w  ww .j a  v  a  2 s . c  o  m*/

    if (l > Integer.MAX_VALUE || l < Integer.MIN_VALUE) {
        throw new IllegalArgumentException("Couldn't cast value to Integer " + l);
    }

    return l.intValue();
}

From source file:model.manager.AdherenceManager.java

/**
 * Get days supply for a drug in a package
 * // w w w  .j a  va 2  s  .co  m
 * @param session
 * @param d
 * @param p
 * @return int
 * @throws HibernateException
 */
public static int getDaysSuppliedForDrugInPackage(Session session, Drug d, Packages p)
        throws HibernateException {

    Long unitsSupplied = (Long) session
            .createQuery(
                    "select sum(pd.amount) from PackagedDrugs as pd where pd.parentPackage.id = :thePackageId"
                            + " and pd.stock.drug.id = :theDrugId")
            .setInteger("thePackageId", p.getId()).setInteger("theDrugId", d.getId()).uniqueResult();

    int unitsPerDay = getUnitsPerDayForDrugInPackage(session, d, p);

    if (unitsPerDay == 0)
        return 0;

    return unitsSupplied.intValue() / unitsPerDay;

}

From source file:model.manager.AdherenceManager.java

/**
 * Get days accumulated for a drug in a package
 * /*from  w ww .ja v a2s . c  o m*/
 * @param session
 * @param d
 * @param p
 * @return int
 * @throws HibernateException
 */
public static int getDaysAccumulatedForDrugInPackage(Session session, Drug d, Packages p)
        throws HibernateException {

    Long unitsAccum = (Long) session.createQuery(
            "select sum(ad.pillCount.accum) from AccumulatedDrugs as ad where ad.withPackage = :thePackageId"
                    + " and ad.pillCount.drug.id = :theDrugId")
            .setInteger("thePackageId", p.getId()).setInteger("theDrugId", d.getId()).uniqueResult();

    int unitsPerDay = getUnitsPerDayForDrugInPackage(session, d, p);

    if (unitsPerDay == 0)
        return 0;

    if (unitsAccum == null)
        return 0;

    return unitsAccum.intValue() / unitsPerDay;
}

From source file:ext.msg.model.Message.java

/**
 * ???/*from w w  w  . java2 s.c  o  m*/
 * @return
 */
public static ChatMsgCount chatMsgUnReadInfo(User user) {
    ChatMsgCount msgCountVO = new ChatMsgCount();
    try {
        List<ChatMsgUnReadNumVO> cmurnVO = ChatMessageResult.getChatMsgUnReadNumVOList(user);
        if (CollectionUtils.isNotEmpty(cmurnVO)) {
            Long totalChatMsgNum = 0L;
            for (ChatMsgUnReadNumVO vo : cmurnVO) {
                totalChatMsgNum += vo.getMsgNum();
            }
            msgCountVO.setChatMsgNum(totalChatMsgNum.intValue());
        }
        msgCountVO.setChatMsgNumJson(play.libs.Json.toJson(cmurnVO).toString());
    } catch (IOException e) {
        e.printStackTrace();
        msgCountVO.setChatMsgNumJson("{\"status\":\"0\",\"error\":\"??\"}");
    }
    return msgCountVO;
}

From source file:com.github.codingtogenomic.CodingToGenomic.java

private static String threePrimeUtrToGenomicCoordinate(final String id, final int coord)
        throws ParseException, MalformedURLException, IOException, InterruptedException {
    final String trEndpoint = "/lookup/id/" + id + "?expand=1";
    final JSONObject trInfo = (JSONObject) getJSON(trEndpoint);
    if (trInfo.isEmpty()) {
        throw new RuntimeException("Got nothing for endpoint " + trEndpoint);
    }//from  ww w . ja  va 2 s  .  c  o  m
    final TranscriptDetails trDetails = getTranscriptDetailsFromJson(trInfo);
    final int cdsLength = trDetails.getCodingLength();
    final String cdsEndpoint = "/map/cds/" + id + "/" + cdsLength + ".." + cdsLength;
    final JSONObject cdsInfo = (JSONObject) getJSON(cdsEndpoint);

    if (cdsInfo.isEmpty()) {
        throw new RuntimeException("Got nothing for endpoint " + cdsEndpoint);
    }

    if (cdsInfo.containsKey("mappings")) {
        StringBuilder mapStrings = new StringBuilder();
        final JSONArray mappings = (JSONArray) cdsInfo.get("mappings");
        int n = 0;
        for (Object map : mappings) {
            n++;
            if (n > 1) {
                mapStrings.append("|");
            }
            JSONObject m = (JSONObject) map;
            if (m.containsKey("start") && m.containsKey("seq_region_name")) {
                //assembly = (String) m.get("assembly_name");
                String chr = (String) m.get("seq_region_name");
                Long genomicCoord = (Long) m.get("start");
                String trPos = trDetails.getCdnaPosition(chr, genomicCoord.intValue());
                try {
                    int pos = Integer.parseInt(trPos);
                    if (coord > pos) {
                        mapStrings.append("UTR position > length of 3' UTR");

                    } else {
                        String cdnaPos = cdnaToGenomicCoordinate(id, pos + coord);
                        if (cdnaPos != null) {
                            mapStrings.append(cdnaPos);
                        }
                    }
                } catch (NumberFormatException | ParseException | IOException | InterruptedException ex) {
                    mapStrings.append("Could not parse cDNA position " + "(" + trPos + ") for " + id);
                }
            }
        }
        return mapStrings.toString();
    }
    return null;
}

From source file:com.github.codingtogenomic.CodingToGenomic.java

private static String fivePrimeUtrToGenomicCoordinate(final String id, final int coord)
        throws ParseException, MalformedURLException, IOException, InterruptedException {

    if (coord > 0) {
        throw new RuntimeException(
                "fivePrimeUtrToGenomicCoordinate method requires " + "coordinate to be less than zero");
    }// w  ww .j  ava2 s . co  m

    final String trEndpoint = "/lookup/id/" + id + "?expand=1";
    final JSONObject trInfo = (JSONObject) getJSON(trEndpoint);
    if (trInfo.isEmpty()) {
        throw new RuntimeException("Got nothing for endpoint " + trEndpoint);
    }
    final TranscriptDetails trDetails = getTranscriptDetailsFromJson(trInfo);

    final String cdsEndpoint = "/map/cds/" + id + "/" + 1 + ".." + 1;
    final JSONObject cdsInfo = (JSONObject) getJSON(cdsEndpoint);

    if (cdsInfo.isEmpty()) {
        throw new RuntimeException("Got nothing for endpoint " + cdsEndpoint);
    }

    if (cdsInfo.containsKey("mappings")) {
        StringBuilder mapStrings = new StringBuilder();
        final JSONArray mappings = (JSONArray) cdsInfo.get("mappings");
        int n = 0;
        for (Object map : mappings) {
            n++;
            if (n > 1) {
                mapStrings.append("|");
            }
            JSONObject m = (JSONObject) map;
            if (m.containsKey("start") && m.containsKey("seq_region_name")) {
                //assembly = (String) m.get("assembly_name");
                String chr = (String) m.get("seq_region_name");
                Long genomicCoord = (Long) m.get("start");
                String trPos = trDetails.getCdnaPosition(chr, genomicCoord.intValue());
                try {
                    int pos = Integer.parseInt(trPos);
                    if (Math.abs(coord) > pos) {
                        mapStrings.append("UTR position > length of 5' UTR");
                    } else {
                        String cdnaPos = cdnaToGenomicCoordinate(id, pos + coord);
                        if (cdnaPos != null) {
                            mapStrings.append(cdnaPos);
                        }
                    }
                } catch (NumberFormatException | ParseException | IOException | InterruptedException ex) {
                    mapStrings.append("Could not parse cDNA position " + "(" + trPos + ") for " + id);
                }
            }
        }
        return mapStrings.toString();
    }
    return null;
}

From source file:com.cloud.utils.StringUtils.java

public static <T> List<T> applyPagination(final List<T> originalList, final Long startIndex,
        final Long pageSizeVal) {
    // Most likely pageSize will never exceed int value, and we need integer to partition the listToReturn
    final boolean applyPagination = startIndex != null && pageSizeVal != null && startIndex <= Integer.MAX_VALUE
            && startIndex >= Integer.MIN_VALUE && pageSizeVal <= Integer.MAX_VALUE
            && pageSizeVal >= Integer.MIN_VALUE;
    List<T> listWPagination = null;
    if (applyPagination) {
        listWPagination = new ArrayList<>();
        final int index = startIndex.intValue() == 0 ? 0 : startIndex.intValue() / pageSizeVal.intValue();
        final List<List<T>> partitions = StringUtils.partitionList(originalList, pageSizeVal.intValue());
        if (index < partitions.size()) {
            listWPagination = partitions.get(index);
        }/*from   w  w  w . j a v  a 2  s  .  c  om*/
    }
    return listWPagination;
}

From source file:com.github.codingtogenomic.CodingToGenomic.java

private static TranscriptDetails getTranscriptDetailsFromJson(final JSONObject j)
        throws ParseException, MalformedURLException, IOException, InterruptedException {
    final TranscriptDetails trans = new TranscriptDetails();
    trans.setTranscriptId((String) j.get("id"));
    final String biotype = (String) j.get("biotype");
    trans.setBiotype(biotype);/* www.j  av a2  s.co m*/
    if (j.containsKey("is_canonical")) {
        String isCanon = j.get("is_canonical").toString();
        if (Integer.parseInt(isCanon) > 0) {
            trans.setIsCanonical(true);
        } else {
            trans.setIsCanonical(false);
        }
    }
    if (j.containsKey("strand")) {
        if ((Long) j.get("strand") > 0) {
            trans.setStrand(1);
        } else {
            trans.setStrand(-1);
        }
    }
    //get exons
    if (j.containsKey("Exon")) {
        JSONArray exons = (JSONArray) j.get("Exon");
        for (Object e : exons) {
            JSONObject jxon = (JSONObject) e;
            TranscriptDetails.Exon exon = trans.new Exon();
            Long start = (Long) jxon.get("start");
            Long end = (Long) jxon.get("end");
            exon.setStart(start.intValue());
            exon.setEnd(end.intValue());
            trans.getExons().add(exon);
        }
        //sort and number exons
        Collections.sort(trans.getExons());
        for (int i = 0; i < trans.getExons().size(); i++) {
            if (trans.getStrand() < 0) {
                trans.getExons().get(i).setOrder(trans.getExons().size() - i);
            } else {
                trans.getExons().get(i).setOrder(i + 1);
            }
        }
    }

    //get chromosome
    if (j.containsKey("seq_region_name")) {
        trans.setChromosome((String) j.get("seq_region_name"));
    }

    //get transcription start and end
    if (j.containsKey("start")) {
        Long start = (Long) j.get("start");
        trans.setTxStart(start.intValue());
    }
    if (j.containsKey("end")) {
        Long end = (Long) j.get("end");
        trans.setTxEnd(end.intValue());
    }

    //get translation start and end if coding                   
    if (j.containsKey("Translation")) {
        JSONObject p = (JSONObject) j.get("Translation");
        trans.setProteinId((String) p.get("id"));
        Long start = (Long) p.get("start");
        Long end = (Long) p.get("end");
        trans.setCdsStart(start.intValue());
        trans.setCdsEnd(end.intValue());
        Long length = (Long) p.get("length");
        trans.setProteinLength(length.intValue());
    } else {
        //if using a transcript id for some reason rest won't return translation
    }
    return trans;
}

From source file:com.redhat.rhn.domain.config.ConfigurationFactory.java

/**
 * Convert input stream to byte array//from  www. j ava2 s .  c om
 * @param stream input stream
 * @param size stream size
 * @return byte array
 */
public static byte[] bytesFromStream(InputStream stream, Long size) {
    byte[] foo = new byte[size.intValue()];
    try {
        //this silly bit of logic is to ensure that we read as much from the file
        //as we possibly can.  Most likely, stream.read(foo) would do the exact same
        //thing, but according to the javadoc, that may not always be the case.

        int offset = 0;
        int read = 0;
        // mark and reset stream, so that stream can be re-read later
        stream.mark(size.intValue());
        do {
            read = stream.read(foo, offset, (foo.length - offset));
            offset += read;
        } while (read > 0 && offset < foo.length);
        stream.reset();
    } catch (IOException e) {
        log.error("IOException while reading config content from input stream!", e);
        throw new RuntimeException("IOException while reading config content from" + " input stream!");
    }
    return foo;
}

From source file:de.dailab.plistacontest.client.RecommenderItem.java

/**
 * Parse the ORP json Messages.//  w  w  w . j ava  2s .co m
 * 
 * @param _jsonMessageBody
 * @return the parsed values encapsulated in a map; null if an error has
 *         been detected.
 */
public static RecommenderItem parseRecommendationRequest(String _jsonMessageBody) {

    try {
        final JSONObject jsonObj = (JSONObject) JSONValue.parse(_jsonMessageBody);

        // parse JSON structure to obtain "context.simple"
        JSONObject jsonObjectContext = (JSONObject) jsonObj.get("context");
        JSONObject jsonObjectContextSimple = (JSONObject) jsonObjectContext.get("simple");

        Long domainID = -3L;
        try {
            domainID = Long.valueOf(jsonObjectContextSimple.get("27").toString());
        } catch (Exception ignored) {
            try {
                domainID = Long.valueOf(jsonObjectContextSimple.get("domainId").toString());
            } catch (Exception e) {
                System.err.println("[Exception] no domainID found in " + _jsonMessageBody);
            }
        }

        Long itemID = null;
        try {
            itemID = Long.valueOf(jsonObjectContextSimple.get("25").toString());
        } catch (Exception ignored) {
            try {
                itemID = Long.valueOf(jsonObjectContextSimple.get("itemId").toString());
            } catch (Exception e) {
                System.err.println("[Exception] no itemID found in " + _jsonMessageBody);
            }
        }

        Long userID = -2L;
        try {
            userID = Long.valueOf(jsonObjectContextSimple.get("57").toString());
        } catch (Exception ignored) {
            try {
                userID = Long.valueOf(jsonObjectContextSimple.get("userId").toString());
            } catch (Exception e) {
                System.err.println("[INFO] no userID found in " + _jsonMessageBody);
            }
        }

        long timeStamp = 0;
        try {
            timeStamp = (Long) jsonObj.get("created_at") + 0L;
        } catch (Exception ignored) {
            timeStamp = (Long) jsonObj.get("timestamp");
        }

        try {
            userID = Long.valueOf(jsonObjectContextSimple.get("userId").toString());
        } catch (Exception e) {
            System.err.println("[INFO] no userID found in " + _jsonMessageBody);
        }

        Long limit = 0L;
        try {
            limit = (Long) jsonObj.get("limit");
        } catch (Exception e) {
            System.err.println("[Exception] no limit found in " + _jsonMessageBody);
        }

        RecommenderItem result = new RecommenderItem(userID, itemID, domainID, timeStamp);
        result.setNumberOfRequestedResults(limit.intValue());

        return result;
    } catch (Exception e) {
        e.printStackTrace();
    }
    return null;
}