Example usage for java.lang InternalError InternalError

Introduction

In this page you can find the example usage for java.lang InternalError InternalError.

Prototype

public InternalError(Throwable cause) 

Source Link

Document

Constructs an InternalError with the specified cause and a detail message of (cause==null ?

Usage

From source file:edu.ku.brc.ui.UIRegistry.java

/**
 * Returns the ViewBasedFacory for the application.
 * @return the ViewBasedFacory for the application
 *///from w w  w  .j av  a 2 s . c  o m
public static ViewBasedDialogFactoryIFace getViewbasedFactory() {
    if (instance.viewbasedFactory == null) {
        String className = System.getProperty("edu.ku.brc.ui.ViewBasedDialogFactoryIFace", null);
        if (StringUtils.isNotEmpty(className)) {
            try {
                instance.viewbasedFactory = (ViewBasedDialogFactoryIFace) Class.forName(className)
                        .newInstance();

            } catch (Exception e) {
                InternalError error = new InternalError(
                        "Can't instantiate ViewBasedDialogFactoryIFace factory " + className);
                error.initCause(e);
                throw error;
            }

        } else {
            throw new InternalError(MISSING_FACTORY_MSG);
        }
    }

    return instance.viewbasedFactory;
}

---

From source file:net.sf.firemox.clickable.target.card.MCard.java

@Override
public int getValue(int index) {
    if (index == IdTokens.MANA_POOL) {
        if (idZone == IdZones.STACK) {
            // return the total cost of associated ability
            return StackManager.getTotalManaPaid(this);
        }/*from   w w w .j av  a 2s.c  om*/
        return MToolKit.manaPool(cachedRegisters);
    }
    if (index == IdTokens.ID) {
        return getId();
    }

    if (index >= IdTokens.FIRST_FREE_CARD_INDEX) {
        return registers[index];
    }
    if (cachedRegisters == null) {
        throw new InternalError("modifiedRegisters is null in getValue in card");
    }
    return cachedRegisters[index];
}

---

From source file:edu.ku.brc.af.ui.forms.formatters.DataObjFieldFormatMgr.java

/**
 * Returns the instance to the singleton
 * @return  the instance to the singleton
 *//*from w  w  w.j  a v  a2 s .c o  m*/
public static DataObjFieldFormatMgr getInstance() {
    if (instance.get() != null) {
        return instance.get();
    }

    synchronized (instance) {
        if (StringUtils.isEmpty(factoryName)) {
            instance.set(new DataObjFieldFormatMgr());

        } else {

            // else
            String factoryNameStr = AccessController.doPrivileged(new java.security.PrivilegedAction<String>() {
                public String run() {
                    return System.getProperty(factoryName);
                }
            });

            if (StringUtils.isNotEmpty(factoryNameStr)) {
                try {
                    instance.set((DataObjFieldFormatMgr) Class.forName(factoryNameStr).newInstance());

                } catch (Exception e) {
                    edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
                    edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(DataObjFieldFormatMgr.class,
                            e);
                    InternalError error = new InternalError(
                            "Can't instantiate DataObjFieldFormatMgr factory " + factoryNameStr);
                    error.initCause(e);
                    throw error;
                }
            }

            if (instance.get() == null) {
                instance.set(new DataObjFieldFormatMgr());
            }
        }

        // now that all formats have been loaded, set table/field/formatter
        // info\
        // must be executed after the instance is set
        for (DataObjSwitchFormatter format : instance.get().formatHash.values()) {
            format.setTableAndFieldInfo();
        }
    }
    return instance.get();
}

---

From source file:net.sf.firemox.clickable.target.card.MCard.java

/**
 * Set to the register of this card a value to a specified index. The given
 * operation is uesed to apply operation on old and the given value. To set
 * the given value as the new one, use the "set" operation.
 * /*from w ww.j av a  2s  .co  m*/
 * @param index
 *          is the index of register to modify
 * @param operation
 *          the operation to use
 * @param rightValue
 *          is the value to use as right operand for the operation
 */
public void setValue(int index, Operation operation, int rightValue) {
    registers[index] = operation.process(registers[index], rightValue);
    if (index == IdCommonToken.DAMAGE) {
        MContextCardCardIntInt context = null;
        if (StackManager.getInstance().getAbilityContext() != null
                && StackManager.triggered.getAbilityContext() instanceof MContextCardCardIntInt
                && operation instanceof Add) {
            context = (MContextCardCardIntInt) StackManager.triggered.getAbilityContext();
            if (context.getValue() != rightValue) {
                throw new InternalError(
                        "wrong damage value regValue=" + rightValue + ", context.int=" + context.getValue());
            }
        }
        if (operation instanceof Add) {
            Log.debug(new StringBuilder("Add ").append(rightValue).append(" damage to card ")
                    .append(getCardName()).append("@").append(hashCode()).append(":").append(rightValue));
            Damage damage = new Damage(context == null ? SystemCard.instance : context.getCard2(), rightValue,
                    context == null ? 0 : context.getValue2());
            damage.tap(tapped);
            add(damage);
        } else {
            // in any other cases, we remove all damages
            clearDamages();
        }
        ui.updateLayout();
    }
    if (index < IdTokens.FIRST_FREE_CARD_INDEX) {
        // we need to refresh the cache of this index
        int modifiedRegister = registerModifiers[index] != null
                ? registerModifiers[index].getValue(getValueIndirection(index))
                : getValueIndirection(index);
        if (this.cachedRegisters[index] != modifiedRegister) {
            // the register of this card has changed.
            // Negative values are not
            cachedRegisters[index] = modifiedRegister < 0 ? 0 : modifiedRegister;
            ui.resetCachedData();
            // no generated event, this managed in the ModifyRegister action
        }
    } else {
        repaint();
    }
}

---

From source file:org.bdval.DAVMode.java

private Table readGeoSeries(final Reader reader) {
    final ArrayTable result = new ArrayTable();

    final GeoSoftFamilyParser parser = new GeoSoftFamilyParser(reader);
    if (parser.skipToDatabaseSection()) {
        final MutableString databaseName = parser.getSectionAttribute();
        System.out.println("Database: " + databaseName);
    } else {//w  w w. java 2  s .c  o m
        System.out.println("No database section found.");
    }
    GEOPlatformIndexed platform = null;
    if (parser.skipToPlatformSection()) {
        final MutableString platformName = parser.getSectionAttribute();
        System.out.println("Platform: " + platformName);
        platform = parser.parsePlatform();
        platform.setName(platformName);
        System.out.println("Platform has " + platform.getNumProbeIds() + " probes.");
    } else {
        System.out.println("No database section found.");
    }
    result.setChunk(platform.getNumProbeIds());
    result.setInitialSize(platform.getNumProbeIds());
    result.addColumn("ID_REF", String.class);

    // append probeset ids:
    for (int probeIndex = 0; probeIndex < platform.getNumProbeIds(); probeIndex++) {
        final String probeId = platform.getProbesetIdentifier(probeIndex).toString();
        result.appendObject(0, probeId);
    }

    final DefaultSignalAdapter formatAdapter = new DefaultSignalAdapter(true);
    while (parser.skipToSampleSection()) {
        // append signal value for each sample:
        final MutableString sampleName = parser.getSectionAttribute();
        final int newColumnIndex = result.addColumn(sampleName.toString(), double.class);
        final SampleDataCallback callback = formatAdapter.getCallback(platform);
        parser.parseSampleData(platform, callback);
        final AffymetrixSampleData data = (AffymetrixSampleData) callback.getParsedData();

        for (final float signal : data.signal) {
            try {
                result.appendDoubleValue(newColumnIndex, signal);
                // result.parseAppend(newColumnIndex, Float.toString(signal));
            } catch (TypeMismatchException e) {
                throw new InternalError("Column must be of type double.");
            }
        }
        formatAdapter.analyzeSampleData(platform, callback, sampleName);

    }

    return result;
}

---

From source file:org.bdval.DAVMode.java

protected Table filterTable(final DAVOptions options, final Table source, final GeneList geneList) {
    try {//from www .  java  2  s. c o m
        final Set<String> columnsToKeep = new ObjectOpenHashSet<String>();
        columnsToKeep.add("ID_REF");
        for (int colIndex = 1; colIndex < source.getColumnNumber(); colIndex++) {
            final String colId = source.getIdentifier(colIndex);
            if (geneList.isProbesetInList(colId)) {
                columnsToKeep.add(colId);
            }
        }
        final Table result = source.copy(new AcceptAllRowFilter(), new KeepSubSetColumnFilter(columnsToKeep));
        /*     final IntList columnIndicesToRemove = new IntArrayList();
           final ObjectList<String> columnIdsToRemove = new ObjectArrayList<String>();
                
           int index=0;
           for (final int toRemoveIndex : columnIndicesToRemove) {
           result.removeColumn(toRemoveIndex, columnIdsToRemove.get(index++));
           }
        */

        rebuildTrainingPlatform(options, result);
        return result;
    } catch (TypeMismatchException e) {
        throw new InternalError("Should not happen.");
    } catch (InvalidColumnException e) {
        throw new InternalError("Should not happen.");
    }

}

---

From source file:org.bdval.DAVMode.java

/**
 * Filter processed table to keep only a subset of samples.
 *
 * @param processedTable/*from   ww w . j  a  v  a2 s.  c  o m*/
 * @param keepSampleIds  Those sample ids to keep in the filtered table.
 * @return filtered table.
 */
protected Table filterSamples(final Table processedTable, final ObjectSet<String> keepSampleIds) {
    final int idColumnIndex = 0;
    final RowFilter myFilter = new IdentifierSetRowFilter(keepSampleIds, idColumnIndex);

    try {
        return processedTable.copy(myFilter);
    } catch (TypeMismatchException e) {
        throw new InternalError("Must not happen.");
    } catch (InvalidColumnException e) {
        throw new InternalError("Must not happen.");
    }

}

---

From source file:org.pentaho.platform.web.http.api.resources.services.FileServiceTest.java

@Test
public void testDoCreateDirsNegative() throws Exception {
    String pathId = "path:to:file:file1.ext";

    doReturn("/path/to/file/file1.ext").when(fileService).idToPath(pathId);

    RepositoryFileDto parentDir = mock(RepositoryFileDto.class);
    doReturn("").when(parentDir).getPath();
    doReturn(FileUtils.PATH_SEPARATOR).when(parentDir).getId();
    when(fileService.getRepoWs().getFile(FileUtils.PATH_SEPARATOR)).thenReturn(parentDir);

    RepositoryFileDto filePath = mock(RepositoryFileDto.class);
    doReturn("/path").when(filePath).getPath();
    doReturn("/path").when(filePath).getId();
    RepositoryFileDto fileTo = mock(RepositoryFileDto.class);
    doReturn("/path/to").when(fileTo).getPath();
    doReturn("/path/to").when(fileTo).getId();
    RepositoryFileDto fileFile = mock(RepositoryFileDto.class);
    doReturn("/path/to/file").when(fileFile).getPath();
    doReturn("/path/to/file").when(fileFile).getId();
    RepositoryFileDto fileFileExt = mock(RepositoryFileDto.class);
    doReturn("/path/to/file/file1").when(fileFileExt).getPath();
    doReturn("/path/to/file/file1").when(fileFileExt).getId();

    when(fileService.getRepoWs().getFile("/path")).thenReturn(filePath);
    when(fileService.getRepoWs().getFile("/path/to")).thenReturn(fileTo);
    when(fileService.getRepoWs().getFile("/path/to/file")).thenReturn(fileFile);
    when(fileService.getRepoWs().getFile("/path/to/file/file1.ext")).thenReturn(fileFileExt);

    assertFalse(fileService.doCreateDir(pathId));

    verify(fileService.getRepoWs(), times(0)).createFolder(anyString(), any(RepositoryFileDto.class),
            anyString());//  ww  w  . j  a v a  2  s.  co  m

    when(fileService.getRepoWs().getFile("/path")).thenReturn(null);
    when(fileService.getRepoWs().createFolder(eq("/"), any(RepositoryFileDto.class), eq("/path")))
            .thenThrow(new InternalError("negativetest"));

    try {
        fileService.doCreateDir(pathId);
    } catch (InternalError e) {
        assertEquals(e.getMessage(), "negativetest");
    }
}

---

From source file:edu.ku.brc.af.ui.forms.ViewFactory.java

/**
 * Returns the singleton for the ViewSetMgr.
 * @return the singleton for the ViewSetMgr
 *///from w w  w.  jav  a 2 s  . co  m
public static ViewFactory getInstance() {
    if (instance != null) {
        return instance;

    }
    // else
    String factoryNameStr = AccessController.doPrivileged(new PrivilegedAction<String>() {
        public String run() {
            return System.getProperty(factoryName);
        }
    });

    if (factoryNameStr != null) {
        try {
            instance = (ViewFactory) Class.forName(factoryNameStr).newInstance();
            return instance;

        } catch (Exception e) {
            edu.ku.brc.af.core.UsageTracker.incrHandledUsageCount();
            edu.ku.brc.exceptions.ExceptionTracker.getInstance().capture(AppContextMgr.class, e);
            InternalError error = new InternalError("Can't instantiate ViewFactory factory " + factoryNameStr); //$NON-NLS-1$
            error.initCause(e);
            throw error;
        }
    }
    return instance = new ViewFactory();
}

---

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