List of usage examples for java.lang Double POSITIVE_INFINITY
double POSITIVE_INFINITY
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From source file:org.jfree.data.general.DefaultHeatMapDatasetTest.java
/** * Some tests for the equals() method./*from w ww . jav a2s. c o m*/ */ @Test public void testEquals() { DefaultHeatMapDataset d1 = new DefaultHeatMapDataset(5, 10, 1.0, 2.0, 3.0, 4.0); DefaultHeatMapDataset d2 = new DefaultHeatMapDataset(5, 10, 1.0, 2.0, 3.0, 4.0); assertEquals(d1, d2); d1 = new DefaultHeatMapDataset(6, 10, 1.0, 2.0, 3.0, 4.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 10, 1.0, 2.0, 3.0, 4.0); assertTrue(d1.equals(d2)); d1 = new DefaultHeatMapDataset(6, 11, 1.0, 2.0, 3.0, 4.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 11, 1.0, 2.0, 3.0, 4.0); assertTrue(d1.equals(d2)); d1 = new DefaultHeatMapDataset(6, 11, 2.0, 2.0, 3.0, 4.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 11, 2.0, 2.0, 3.0, 4.0); assertTrue(d1.equals(d2)); d1 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 3.0, 4.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 3.0, 4.0); assertTrue(d1.equals(d2)); d1 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 4.0, 4.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 4.0, 4.0); assertTrue(d1.equals(d2)); d1 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 4.0, 5.0); assertFalse(d1.equals(d2)); d2 = new DefaultHeatMapDataset(6, 11, 2.0, 3.0, 4.0, 5.0); assertTrue(d1.equals(d2)); d1.setZValue(1, 2, 3.0); assertFalse(d1.equals(d2)); d2.setZValue(1, 2, 3.0); assertTrue(d1.equals(d2)); d1.setZValue(0, 0, Double.NEGATIVE_INFINITY); assertFalse(d1.equals(d2)); d2.setZValue(0, 0, Double.NEGATIVE_INFINITY); assertTrue(d1.equals(d2)); d1.setZValue(0, 1, Double.POSITIVE_INFINITY); assertFalse(d1.equals(d2)); d2.setZValue(0, 1, Double.POSITIVE_INFINITY); assertTrue(d1.equals(d2)); d1.setZValue(0, 2, Double.NaN); assertFalse(d1.equals(d2)); d2.setZValue(0, 2, Double.NaN); assertTrue(d1.equals(d2)); }
From source file:it.units.malelab.ege.core.listener.PropertiesListener.java
@Override public void listen(EvolutionEvent<G, T, F> event) { synchronized (this) { if (resetData) { resetData = false;//w ww .j a v a 2 s .co m //reset data counts.get(NO_OPERATOR).clear(); for (String operatorName : operatorNames.values()) { counts.get(operatorName).clear(); partialDistances.get(operatorName).clear(); } } } if (event instanceof MappingEvent) { MappingEvent<G, T, F> mappingEvent = (MappingEvent<G, T, F>) event; counts.get(NO_OPERATOR).add(CountType.MAPPING); if (Node.EMPTY_TREE.equals(mappingEvent.getPhenotype())) { counts.get(NO_OPERATOR).add(CountType.INVALID); } } if (event instanceof OperatorApplicationEvent) { OperatorApplicationEvent<G, T, F> operatorApplicationEvent = (OperatorApplicationEvent<G, T, F>) event; String operatorName = getOperatorName(operatorApplicationEvent.getOperator()); if (operatorName != null) { counts.get(operatorName).add(CountType.OPERATOR_APPLICATION); boolean differentPhenotype = false; boolean differentGenotype = false; boolean allInvalid = true; //compute distances for (Individual<G, T, F> child : operatorApplicationEvent.getChildren()) { if (Node.EMPTY_TREE.equals(child.getPhenotype())) { continue; } double minGenotypeDistance = Double.POSITIVE_INFINITY; double minPhenotypeDistance = Double.POSITIVE_INFINITY; for (Individual<G, T, F> parent : operatorApplicationEvent.getParents()) { if (Node.EMPTY_TREE.equals(parent.getPhenotype())) { continue; } allInvalid = false; double localGenotypeDistance = genotypeDistance.d(parent.getGenotype(), child.getGenotype()); if (minGenotypeDistance > localGenotypeDistance) { minGenotypeDistance = localGenotypeDistance; } double localPhenotypeDistance = phenotypeDistance.d(parent.getPhenotype(), child.getPhenotype()); if (minPhenotypeDistance > localPhenotypeDistance) { minPhenotypeDistance = localPhenotypeDistance; } } //add sample for locality if (minPhenotypeDistance < Double.POSITIVE_INFINITY) { partialDistances.get(operatorName) .add(new Pair<>(minGenotypeDistance, minPhenotypeDistance)); cumulativeDistances.get(operatorName) .add(new Pair<>(minGenotypeDistance, minPhenotypeDistance)); } //check difference differentGenotype = differentGenotype || (minGenotypeDistance > 0); differentPhenotype = differentPhenotype || (minPhenotypeDistance > 0); } //check redundancy if (!allInvalid) { counts.get(operatorName).add(CountType.VALID_OPERATOR_APPLICATION); if (differentGenotype && !differentPhenotype) { counts.get(operatorName).add(CountType.REDUNDANT); } } //compute best fitnesses F bestParentFitness = null; for (Individual<G, T, F> parent : operatorApplicationEvent.getParents()) { if ((bestParentFitness == null) || (fitnessComparator.compare(parent.getFitness(), bestParentFitness) < 0)) { bestParentFitness = parent.getFitness(); } } F bestChildFitness = null; for (Individual<G, T, F> child : operatorApplicationEvent.getChildren()) { if ((bestChildFitness == null) || (fitnessComparator.compare(child.getFitness(), bestChildFitness) < 0)) { bestChildFitness = child.getFitness(); } } //check evolvability if (fitnessComparator.compare(bestChildFitness, bestParentFitness) < 0) { counts.get(operatorName).add(CountType.BETTER_FITNESS); } } } }
From source file:com.rapidminer.gui.plotter.charts.ParallelPlotter2.java
private void prepareData() { this.dataset = new XYSeriesCollection(); // calculate min and max int columns = this.dataTable.getNumberOfColumns(); double[] min = new double[columns]; double[] max = new double[columns]; if (isLocalNormalized()) { for (int c = 0; c < columns; c++) { min[c] = Double.POSITIVE_INFINITY; max[c] = Double.NEGATIVE_INFINITY; }//ww w . j a v a 2s. c o m synchronized (dataTable) { Iterator<DataTableRow> i = dataTable.iterator(); while (i.hasNext()) { DataTableRow row = i.next(); for (int c = 0; c < dataTable.getNumberOfColumns(); c++) { double value = row.getValue(c); min[c] = MathFunctions.robustMin(min[c], value); max[c] = MathFunctions.robustMax(max[c], value); } } } } this.domainAxisMap = null; synchronized (dataTable) { this.colorMap = new double[dataTable.getNumberOfRows()]; Iterator<DataTableRow> i = this.dataTable.iterator(); int idCounter = 0; while (i.hasNext()) { DataTableRow row = i.next(); String id = row.getId(); if (id == null) { id = (idCounter + 1) + ""; } XYSeries series = new XYSeries(id, false, false); int counter = 0; for (int column = 0; column < dataTable.getNumberOfColumns(); column++) { if ((!dataTable.isSpecial(column)) && (column != colorColumn)) { double value = row.getValue(column); if (isLocalNormalized()) { value = (value - min[column]) / (max[column] - min[column]); } series.add(counter, value); counter++; } } if (colorColumn >= 0) { this.colorMap[idCounter] = row.getValue(colorColumn); } this.dataset.addSeries(series); idCounter++; } } if (domainAxisMap == null) { List<String> domainValues = new LinkedList<>(); for (int column = 0; column < dataTable.getNumberOfColumns(); column++) { if ((!dataTable.isSpecial(column)) && (column != colorColumn)) { domainValues.add(dataTable.getColumnName(column)); } } this.domainAxisMap = new String[domainValues.size()]; domainValues.toArray(this.domainAxisMap); } }
From source file:edu.umd.cs.psl.model.kernel.setdefinition.GroundSetDefinition.java
@Override public double getIncompatibility() { assert setAtom.getNumberOfValues() == 1; if (NumericUtilities.equals(setAtom.getSoftValue(0), getAggregateValue())) { return 0.0; } else/*from w w w . ja va 2s . co m*/ return Double.POSITIVE_INFINITY; }
From source file:Navigation.Vertex.java
public static ArrayList<Point2D.Double> getMyDijkstra(Map<Point2D.Double, List<Point2D.Double>> adjacencyMatrix, Point2D.Double start, Point2D.Double end, Log log) { // log.info("start: " + start.toString()); // end = new Point2D.Double(1.3595287799835205, 2.2231287956237793); // log.info("END: " + end.toString()); Iterator<Entry<Point2D.Double, List<Point2D.Double>>> it = adjacencyMatrix.entrySet().iterator(); List<Vertex> vertices = new ArrayList<Vertex>(); while (it.hasNext()) { Map.Entry<Point2D.Double, List<Point2D.Double>> pairs = it.next(); Point2D.Double point1 = pairs.getKey(); vertices.add(new Vertex(point1)); // log.info("added new vertex for " + point1.toString()); }/*from w w w . ja va 2s.c o m*/ Iterator<Entry<Point2D.Double, List<Point2D.Double>>> pit = adjacencyMatrix.entrySet().iterator(); while (pit.hasNext()) { Map.Entry<Point2D.Double, List<Point2D.Double>> pairs = pit.next(); Point2D.Double point1 = pairs.getKey(); Vertex v1 = findVertex(vertices, point1); for (Point2D.Double point2 : pairs.getValue()) { double cost = Math.sqrt( Math.pow(Math.abs(point1.x - point2.x), 2) + Math.pow(Math.abs(point1.y - point2.y), 2)); Vertex v2 = findVertex(vertices, point2); v1.adjacencies.add(new Edge(v2, cost)); v2.adjacencies.add(new Edge(v1, cost)); } } log.info("looking for start vertex " + start); DijkstraGood.computePaths(findVertex(vertices, start)); // for (Vertex v : vertices) { // List<Edge> edges = v.adjacencies; // String s = v + " {"; // for (Edge e : edges) { // s += e.target.toString() + ", "; // } // log.info(s); // log.info("Distance to " + v + ": " + v.minDistance); // List<Vertex> path = DijkstraGood.getShortestPathTo(v); // log.info("Path: " + path); // } Vertex endV = findVertex(vertices, end); List<Vertex> path = DijkstraGood.getShortestPathTo(endV); ArrayList<Point2D.Double> fin = new ArrayList<Point2D.Double>(); for (Vertex v : path) { if (v.minDistance == Double.POSITIVE_INFINITY) { return null; } fin.add(v.myPoint); log.info("FINAL PATH TO " + v.myPoint); } return fin; }
From source file:edu.rice.cs.bioinfo.programs.phylonet.algos.network.NetworkLikelihoodFromGTTBL.java
private void initializeNetwork(Network<Object> speciesNetwork, Map<NetNode, Double> node2constraints, Map<NetNode<Object>, Double> node2height) { Map<NetNode, Integer> node2depth = new Hashtable<NetNode, Integer>(); Map<NetNode, Integer> node2ID = new Hashtable<NetNode, Integer>(); int id = 0;// ww w. j a va 2 s . c om for (NetNode<Object> node : Networks.postTraversal(speciesNetwork)) { node2ID.put(node, id++); if (node.isLeaf()) { node2height.put(node, 0.0); node2depth.put(node, 0); continue; } double upperBound = -1; if (node2constraints.get(node) != Double.POSITIVE_INFINITY) { upperBound = node2constraints.get(node); } node2height.put(node, upperBound); int maxDepth = 0; for (NetNode child : node.getChildren()) { maxDepth = Math.max(maxDepth, node2depth.get(child)); } node2depth.put(node, maxDepth + 1); } boolean updated; do { updated = false; for (NetNode<Object> node : speciesNetwork.bfs()) { double minParentHeight = Double.MAX_VALUE; for (NetNode<Object> parent : node.getParents()) { double parentHeight = node2height.get(parent); if (parentHeight > 0) { minParentHeight = Math.min(minParentHeight, parentHeight); } } if (node2height.get(node) > minParentHeight) { node2height.put(node, minParentHeight); updated = true; } } } while (updated); boolean[][] M = computeM(speciesNetwork, node2ID); for (NetNode<Object> node : Networks.postTraversal(speciesNetwork)) { int nodeID = node2ID.get(node); double minParent = Double.MAX_VALUE; int maxParentDepth = 0; double maxChild = 0; for (NetNode<Object> relateNode : edu.rice.cs.bioinfo.programs.phylonet.structs.network.util.Networks .postTraversal(speciesNetwork)) { int relateNodeID = node2ID.get(relateNode); if (M[relateNodeID][nodeID]) { double parentHeight = node2height.get(relateNode); if (parentHeight >= 0) { if (minParent > parentHeight) { minParent = parentHeight; maxParentDepth = node2depth.get(relateNode); } else if (minParent == parentHeight) { maxParentDepth = Math.max(maxParentDepth, node2depth.get(relateNode)); } } } else if (M[nodeID][relateNodeID]) { double childHeight = node2height.get(relateNode); if (childHeight >= 0) { maxChild = Math.max(maxChild, childHeight); } else { throw new RuntimeException(); } } } double currentHeight = node2height.get(node); if (currentHeight >= minParent || (currentHeight == -1 && minParent != Double.MAX_VALUE)) { int depthDiff = maxParentDepth - node2depth.get(node) + 1; currentHeight = maxChild + (minParent - maxChild) / depthDiff; //currentHeight = Math.round((maxChild + (minParent - maxChild)/depthDiff)*1000000)/1000000.0; node2height.put(node, currentHeight); } else if (currentHeight == -1 && minParent == Double.MAX_VALUE) { currentHeight = maxChild + 1; node2height.put(node, currentHeight); } } double overallMin = 0; for (NetNode<Object> node : edu.rice.cs.bioinfo.programs.phylonet.structs.network.util.Networks .postTraversal(speciesNetwork)) { if (node.isLeaf()) continue; double updatedHeight = node2height.get(node) - overallMin; double maxChild = 0; for (NetNode child : node.getChildren()) { maxChild = Math.max(maxChild, node2height.get(child)); } if (updatedHeight == maxChild) { updatedHeight = maxChild + overallMin; } node2height.put(node, updatedHeight); for (NetNode child : node.getChildren()) { child.setParentDistance(node, updatedHeight - node2height.get(child)); if (child.isNetworkNode()) { child.setParentProbability(node, 0.5); } } } //System.out.println(speciesNetwork); for (NetNode<Object> node : speciesNetwork.bfs()) { double height = node2height.get(node); if (height < 0) { throw new RuntimeException(); } for (NetNode child : node.getChildren()) { if (height < node2height.get(child)) { throw new RuntimeException(); } } } }
From source file:mase.spec.SafeHybridExchanger.java
private double fitnessDifference(MetaPopulation reference, MetaPopulation other, EvolutionState state) { // search foreign of reference in other Foreign f = null;/*from w w w. j av a2 s.c o m*/ for (Foreign fOther : other.foreigns) { if (fOther.origin == reference) { f = fOther; break; } } if (f == null || f.inds == null) { return Double.POSITIVE_INFINITY; } // pick individuals from the reference population, using the same method used to pick the foreign individuals Individual[] refInds = pickIndividuals(reference.inds, f.inds.length, foreignMode, state); if (differenceMode == DifferenceMode.mean) { double refFit = 0; for (Individual i : refInds) { refFit += i.fitness.fitness(); } double foreignFit = 0; for (Individual i : f.inds) { foreignFit += i.fitness.fitness(); } return refFit == 0 ? Double.POSITIVE_INFINITY : Math.abs(refFit - foreignFit) / Math.abs(refFit); } else if (differenceMode == DifferenceMode.max) { double refFit = Double.NEGATIVE_INFINITY; for (Individual i : refInds) { refFit = Math.max(refFit, i.fitness.fitness()); } double foreignFit = Double.NEGATIVE_INFINITY; for (Individual i : f.inds) { foreignFit = Math.max(foreignFit, i.fitness.fitness()); } return refFit == 0 ? Double.POSITIVE_INFINITY : Math.abs(refFit - foreignFit) / Math.abs(refFit); } else if (differenceMode == DifferenceMode.utest) { double[] refFits = new double[refInds.length]; double[] forFits = new double[f.inds.length]; for (int i = 0; i < refFits.length; i++) { refFits[i] = refInds[i].fitness.fitness(); } for (int i = 0; i < forFits.length; i++) { forFits[i] = f.inds[i].fitness.fitness(); } MannWhitneyUTest test = new MannWhitneyUTest(); return test.mannWhitneyU(refFits, forFits) / (refFits.length * forFits.length); } else { return Double.NaN; } }
From source file:com.rapidminer.operator.preprocessing.filter.InfiniteValueReplenishment.java
/** * Replaces the values//from ww w .j av a 2s . c o m * * @throws UndefinedParameterError */ @Override public double getReplenishmentValue(int functionIndex, ExampleSet exampleSet, Attribute attribute) throws UndefinedParameterError { int chosen = getParameterAsInt(PARAMETER_REPLENISHMENT_WHAT); switch (functionIndex) { case NONE: return Double.POSITIVE_INFINITY; case ZERO: return 0.0; case MAX_BYTE: return (chosen == 0) ? Byte.MAX_VALUE : Byte.MIN_VALUE; case MAX_INT: return (chosen == 0) ? Integer.MAX_VALUE : Integer.MIN_VALUE; case MAX_DOUBLE: return (chosen == 0) ? Double.MAX_VALUE : -Double.MAX_VALUE; case MISSING: return Double.NaN; case VALUE: return getParameterAsDouble(PARAMETER_REPLENISHMENT_VALUE); default: throw new RuntimeException("Illegal value functionIndex: " + functionIndex); } }
From source file:de.tudarmstadt.lt.ltbot.postprocessor.DecesiveLoggerTest.java
@Test public void b_content6() throws InterruptedException, JSONException, IOException { System.out.println("10"); curi.getExtraInfo().put(SharedConstants.EXTRA_INFO_PERPLEXITY, String.format("%012g", Double.POSITIVE_INFINITY)); l.process(curi);//from w w w . j ava2 s . com checkContentLastLine(true); }
From source file:org.logisticPlanning.utils.graphics.chart.impl.jfree._JFCXYItemRenderer.java
/** * create a wrapped renderer/*from w ww . j a va2s .c o m*/ * * @param out * the output renderer */ _JFCXYItemRenderer(final XYItemRenderer out) { this.m_out = out; // this.m_maxX = Double.MAX_VALUE; // this.m_maxY = Double.MAX_VALUE; // this.m_minX = Double.NEGATIVE_INFINITY; // this.m_minY = Double.NEGATIVE_INFINITY; this.m_maxX = Double.NEGATIVE_INFINITY; this.m_maxY = Double.NEGATIVE_INFINITY; this.m_minX = Double.POSITIVE_INFINITY; this.m_minY = Double.POSITIVE_INFINITY; // this.m_src = new double[8]; // this.m_dst = new double[8]; }