List of usage examples for java.io PrintWriter append
public PrintWriter append(char c)
From source file:au.org.paperminer.main.UserFilter.java
/** * Either extracts the current user editable data (email and trove key) for possible * user modification, or resets the DB data to passed values. * @param req/* w ww . j a va 2 s. co m*/ * @param resp */ private void updateUser(HttpServletRequest req, HttpServletResponse resp) { String id = req.getParameter("id"); m_logger.info("updating user info " + id); if ((id != null) && id.length() > 0) { resetUserData(id, req, resp); } else { id = CookieHelper.getCookieValue(req, PaperMinerConstants.PMC_USER_ID); if (id == null) { req.setAttribute(PaperMinerConstants.ERROR_PAGE, "e110"); } else { m_logger.debug("retrieving user info"); UserHelper helper = new UserHelper(id); if (!helper.isKnownUser()) { req.setAttribute(PaperMinerConstants.ERROR_PAGE, "e106"); } else { try { resp.setContentType("text/html"); PrintWriter pm = resp.getWriter(); pm.write("<form id=\"user-mod\" action=\"\" method=\"post\">"); pm.append("<input id=\"id\" type=\"hidden\" value=\"" + helper.get(UserHelper.ID) + "\"/>"); pm.append("<table>"); pm.append("<tr><td>eMail address </td><td><input id=\"em\" type=\"text=\" value=\"" + helper.get(UserHelper.EMAIL) + "\"/></td></tr>"); pm.append("<tr><td>TROVE Key </td><td><input id=\"tk\" type=\"text=\" value=\"" + helper.get(UserHelper.TROVE_KEY) + "\"/></td></tr>"); pm.append("</table>"); pm.append( "<p><input id=\"vfy\" name=\"usr-cb\" type=\"checkbox\" value=\"verify\"/> Verify my eMail Address."); pm.append("</form>"); } catch (IOException ex) { req.setAttribute(PaperMinerConstants.ERROR_PAGE, "e107"); } } } } }
From source file:opendap.hai.BesControlApi.java
private void controlApi(HttpServletRequest request, HttpServletResponse response, boolean isPost) throws IOException { StringBuilder sb = new StringBuilder(); Enumeration headers = request.getHeaderNames(); while (headers.hasMoreElements()) { String headerName = (String) headers.nextElement(); String headerValue = request.getHeader(headerName); sb.append(" ").append(headerName).append(" = '").append(headerValue).append("'\n"); }/*from ww w .j a va 2s . c o m*/ log.debug("\nHTTP HEADERS:\n{}", sb); //log.debug("\nBODY:\n{}",getRequestBodyAsString(request)); HashMap<String, String> kvp = Util.processQuery(request); String status = null; try { status = processBesCommand(kvp, isPost); } catch (BesAdminFail baf) { status = baf.getMessage(); } PrintWriter output = response.getWriter(); //@todo work this out to not escape everything. //output.append(StringEscapeUtils.escapeHtml(status)); //String s = processStatus(status); output.append(status); output.flush(); }
From source file:edu.stanford.epad.epadws.handlers.dicom.DownloadUtil.java
/** * Method to download Subject dicoms//w ww . j a v a 2s .c om * * @param stream - true if file should stream, otherwise placed on disk to be picked (should be deleted after use) * @param httpResponse * @param subjectReference * @param username * @param sessionID * @param searchFilter * @param studyUIDs - download only these selected studies * @throws Exception */ public static void downloadSubject(boolean stream, HttpServletResponse httpResponse, SubjectReference subjectReference, String username, String sessionID, EPADSearchFilter searchFilter, String studyUIDs, boolean includeAIMs) throws Exception { log.info("Downloading subject:" + subjectReference.subjectID + " stream:" + stream); Set<String> studies = new HashSet<String>(); if (studyUIDs != null) { String[] ids = studyUIDs.split(","); for (String id : ids) studies.add(id.trim()); } String downloadDirPath = EPADConfig.getEPADWebServerResourcesDir() + downloadDirName + "temp" + Long.toString(System.currentTimeMillis()); log.info("download path:" + downloadDirPath); File downloadDir = new File(downloadDirPath); downloadDir.mkdirs(); EpadOperations epadOperations = DefaultEpadOperations.getInstance(); List<String> fileNames = new ArrayList<String>(); EPADStudyList studyList = epadOperations.getStudyDescriptions(subjectReference, username, sessionID, searchFilter); for (EPADStudy study : studyList.ResultSet.Result) { if (!studies.isEmpty() && !studies.contains(study.studyUID)) continue; File studyDir = new File(downloadDir, "Study-" + study.studyUID); studyDir.mkdirs(); StudyReference studyReference = new StudyReference(subjectReference.projectID, subjectReference.subjectID, study.studyUID); EPADSeriesList seriesList = epadOperations.getSeriesDescriptions(studyReference, username, sessionID, searchFilter, false); for (EPADSeries series : seriesList.ResultSet.Result) { log.info("series proj=" + series.projectID + " study proj=" + studyReference.projectID); if (series.projectID != studyReference.projectID) //if the series is not in this project, skip continue; File seriesDir = new File(studyDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); SeriesReference seriesReference = new SeriesReference(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); EPADImageList imageList = new EPADImageList(); try { imageList = epadOperations.getImageDescriptions(seriesReference, sessionID, null); } catch (Exception x) { } for (EPADImage image : imageList.ResultSet.Result) { String name = image.imageUID + ".dcm"; File imageFile = new File(seriesDir, name); fileNames.add("Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileOutputStream fos = null; try { fos = new FileOutputStream(imageFile); String queryString = "requestType=WADO&studyUID=" + seriesReference.studyUID + "&seriesUID=" + seriesReference.seriesUID + "&objectUID=" + image.imageUID + "&contentType=application/dicom"; performWADOQuery(queryString, fos, username, sessionID); } catch (Exception x) { log.warning("Error downloading image using wado"); } finally { if (fos != null) fos.close(); } } //ml include aims copied from series if (includeAIMs) { EPADAIMList aimList = epadOperations.getSeriesAIMDescriptions(seriesReference, username, sessionID); aimList = AIMUtil.filterPermittedImageAnnotations(aimList, username, sessionID); for (EPADAIM aim : aimList.ResultSet.Result) { String name = "Aim_" + format4Filename(study.patientName) + "_" + aim.aimID + ".xml"; File aimFile = new File(seriesDir, name); fileNames.add( "Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileWriter fw = null; try { fw = new FileWriter(aimFile); fw.write(formatXMLtoLatest(aim.xml)); } catch (Exception x) { log.warning("Error writing aim file"); } finally { if (fw != null) fw.close(); } } } } } String zipName = "Patient-" + subjectReference.subjectID + ".zip"; if (stream) { httpResponse.setContentType("application/zip"); httpResponse.setHeader("Content-Disposition", "attachment;filename=\"" + zipName + "\""); } File zipFile = null; OutputStream out = null; try { if (stream) { out = httpResponse.getOutputStream(); } else { zipFile = new File(downloadDir, zipName); out = new FileOutputStream(zipFile); } } catch (Exception e) { log.warning("Error getting output stream", e); throw e; } ZipAndStreamFiles(out, fileNames, downloadDirPath + "/"); if (!stream) { File newZip = new File(EPADConfig.getEPADWebServerResourcesDir() + downloadDirName, zipName); zipFile.renameTo(newZip); EPADFile epadFile = new EPADFile("", "", "", "", "", zipName, zipFile.length(), "Patient", formatDate(new Date()), downloadDirName + zipFile.getName(), true, subjectReference.subjectID); PrintWriter responseStream = httpResponse.getWriter(); responseStream.append(epadFile.toJSON()); } EPADFileUtils.deleteDirectoryAndContents(downloadDir); }
From source file:edu.stanford.epad.epadws.handlers.dicom.DownloadUtil.java
/** * Method to download Study dicoms//from w ww . j a v a2 s .co m * * @param stream - true if file should stream, otherwise placed on disk to be picked (should be deleted after use) * @param httpResponse * @param studyReference * @param username * @param sessionID * @param searchFilter * @param seriesUIDs - download only these selected series * @throws Exception */ public static void downloadStudy(boolean stream, HttpServletResponse httpResponse, StudyReference studyReference, String username, String sessionID, EPADSearchFilter searchFilter, String seriesUIDs, boolean includeAIMs) throws Exception { log.info("Downloading study:" + studyReference.studyUID + " stream:" + stream); Set<String> seriesSet = new HashSet<String>(); if (seriesUIDs != null) { String[] ids = seriesUIDs.split(","); for (String id : ids) seriesSet.add(id.trim()); } String downloadDirPath = EPADConfig.getEPADWebServerResourcesDir() + downloadDirName + "temp" + Long.toString(System.currentTimeMillis()); File downloadDir = new File(downloadDirPath); downloadDir.mkdirs(); EpadOperations epadOperations = DefaultEpadOperations.getInstance(); List<String> fileNames = new ArrayList<String>(); EPADSeriesList seriesList = epadOperations.getSeriesDescriptions(studyReference, username, sessionID, searchFilter, false); int imageCount = 0; log.info("Number series in study:" + seriesList.ResultSet.totalRecords); for (EPADSeries series : seriesList.ResultSet.Result) { if (!seriesSet.isEmpty() && !seriesSet.contains(series.seriesUID)) continue; File seriesDir = new File(downloadDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); SeriesReference seriesReference = new SeriesReference(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); if (series.isNonDicomSeries) { log.debug("Downloading files:" + series.seriesUID); EpadProjectOperations projectOperations = DefaultEpadProjectOperations.getInstance(); List<EpadFile> files = projectOperations.getSeriesFiles(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); for (EpadFile file : files) { String name = file.getName(); File epadFile = new File(seriesDir, name); EPADFileUtils.copyFile( new File(EPADConfig.getEPADWebServerResourcesDir() + getEpadFilePath(file)), epadFile); fileNames.add("Series-" + series.seriesUID + "/" + name); } continue; } EPADImageList imageList = new EPADImageList(); try { imageList = epadOperations.getImageDescriptions(seriesReference, sessionID, null); } catch (Exception x) { } int i = 0; for (EPADImage image : imageList.ResultSet.Result) { imageCount++; String name = image.imageUID + ".dcm"; File imageFile = new File(seriesDir, name); fileNames.add("Series-" + series.seriesUID + "/" + name); FileOutputStream fos = null; try { fos = new FileOutputStream(imageFile); String queryString = "requestType=WADO&studyUID=" + seriesReference.studyUID + "&seriesUID=" + seriesReference.seriesUID + "&objectUID=" + image.imageUID + "&contentType=application/dicom"; performWADOQuery(queryString, fos, username, sessionID); } catch (Exception x) { log.warning("Error downloading image using wado"); } finally { if (fos != null) fos.close(); } } if (includeAIMs) { EPADAIMList aimList = epadOperations.getSeriesAIMDescriptions(seriesReference, username, sessionID); aimList = AIMUtil.filterPermittedImageAnnotations(aimList, username, sessionID); for (EPADAIM aim : aimList.ResultSet.Result) { String name = "Aim_" + format4Filename(series.patientName) + "_" + aim.aimID + ".xml"; File aimFile = new File(seriesDir, name); fileNames.add("Series-" + series.seriesUID + "/" + name); FileWriter fw = null; try { fw = new FileWriter(aimFile); fw.write(formatXMLtoLatest(aim.xml)); } catch (Exception x) { log.warning("Error writing aim file"); } finally { if (fw != null) fw.close(); } } } } String zipName = "Patient-" + studyReference.subjectID + "-Study-" + studyReference.studyUID + ".zip"; if (stream) { httpResponse.setContentType("application/zip"); httpResponse.setHeader("Content-Disposition", "attachment;filename=\"" + zipName + "\""); } File zipFile = null; OutputStream out = null; try { if (stream) { out = httpResponse.getOutputStream(); } else { zipFile = new File(downloadDir, zipName); out = new FileOutputStream(zipFile); } } catch (Exception e) { log.warning("Error getting output stream", e); throw e; } ZipAndStreamFiles(out, fileNames, downloadDirPath + "/"); if (!stream) { File newZip = new File(EPADConfig.getEPADWebServerResourcesDir() + downloadDirName, zipName); zipFile.renameTo(newZip); EPADFile epadFile = new EPADFile("", "", "", "", "", zipName, zipFile.length(), "Study", formatDate(new Date()), downloadDirName + zipFile.getName(), true, studyReference.studyUID); PrintWriter responseStream = httpResponse.getWriter(); responseStream.append(epadFile.toJSON()); } EPADFileUtils.deleteDirectoryAndContents(downloadDir); }
From source file:edu.stanford.epad.epadws.handlers.dicom.DownloadUtil.java
/** * Method to download Project dicoms/* w w w . jav a 2 s .c o m*/ * * @author Emel Alkim * @param stream - true if file should stream, otherwise placed on disk to be picked (should be deleted after use) * @param httpResponse * @param subjectReference * @param username * @param sessionID * @param searchFilter * @param subjectUIDs - download only these selected subjects * @throws Exception */ public static void downloadProject(boolean stream, HttpServletResponse httpResponse, ProjectReference projectReference, String username, String sessionID, EPADSearchFilter searchFilter, String subjectUIDs, boolean includeAIMs) throws Exception { log.info("Downloading project:" + projectReference.projectID + " stream:" + stream); Set<String> subjects = new HashSet<String>(); if (subjectUIDs != null) { String[] ids = subjectUIDs.split(","); for (String id : ids) subjects.add(id.trim()); } String downloadDirPath = EPADConfig.getEPADWebServerResourcesDir() + downloadDirName + "temp" + Long.toString(System.currentTimeMillis()); File downloadDir = new File(downloadDirPath); downloadDir.mkdirs(); EpadOperations epadOperations = DefaultEpadOperations.getInstance(); List<String> fileNames = new ArrayList<String>(); //TODO ml change the static numbers //subjects EPADSubjectList subjectList = epadOperations.getSubjectDescriptions(projectReference.projectID, username, sessionID, searchFilter, 1, 5000, "", false); for (EPADSubject subject : subjectList.ResultSet.Result) { if (!subjects.isEmpty() && !subjects.contains(subject.subjectID)) continue; File subjectDir = new File(downloadDir, "Subject-" + subject.subjectID); subjectDir.mkdirs(); SubjectReference subjectReference = new SubjectReference(projectReference.projectID, subject.subjectID); //studies EPADStudyList studyList = epadOperations.getStudyDescriptions(subjectReference, username, sessionID, searchFilter); for (EPADStudy study : studyList.ResultSet.Result) { File studyDir = new File(subjectDir, "Study-" + study.studyUID); studyDir.mkdirs(); StudyReference studyReference = new StudyReference(subjectReference.projectID, subjectReference.subjectID, study.studyUID); //series EPADSeriesList seriesList = epadOperations.getSeriesDescriptions(studyReference, username, sessionID, searchFilter, false); for (EPADSeries series : seriesList.ResultSet.Result) { File seriesDir = new File(studyDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); SeriesReference seriesReference = new SeriesReference(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); EPADImageList imageList = new EPADImageList(); try { imageList = epadOperations.getImageDescriptions(seriesReference, sessionID, null); } catch (Exception x) { } for (EPADImage image : imageList.ResultSet.Result) { String name = image.imageUID + ".dcm"; File imageFile = new File(seriesDir, name); fileNames.add("Subject-" + subjectReference.subjectID + "/Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileOutputStream fos = null; try { fos = new FileOutputStream(imageFile); String queryString = "requestType=WADO&studyUID=" + seriesReference.studyUID + "&seriesUID=" + seriesReference.seriesUID + "&objectUID=" + image.imageUID + "&contentType=application/dicom"; performWADOQuery(queryString, fos, username, sessionID); } catch (Exception x) { log.warning("Error downloading image using wado"); } finally { if (fos != null) fos.close(); } } //ml include aims copied from series if (includeAIMs) { EPADAIMList aimList = epadOperations.getSeriesAIMDescriptions(seriesReference, username, sessionID); aimList = AIMUtil.filterPermittedImageAnnotations(aimList, username, sessionID); for (EPADAIM aim : aimList.ResultSet.Result) { String name = "Aim_" + format4Filename(subject.subjectName) + "_" + aim.aimID + ".xml"; File aimFile = new File(seriesDir, name); fileNames.add("Subject-" + subjectReference.subjectID + "/Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileWriter fw = null; try { fw = new FileWriter(aimFile); fw.write(formatXMLtoLatest(aim.xml)); } catch (Exception x) { log.warning("Error writing aim file"); } finally { if (fw != null) fw.close(); } } } } } } String zipName = "Project-" + projectReference.projectID + ".zip"; if (stream) { httpResponse.setContentType("application/zip"); httpResponse.setHeader("Content-Disposition", "attachment;filename=\"" + zipName + "\""); } File zipFile = null; OutputStream out = null; try { if (stream) { out = httpResponse.getOutputStream(); } else { zipFile = new File(downloadDir, zipName); out = new FileOutputStream(zipFile); } } catch (Exception e) { log.warning("Error getting output stream", e); throw e; } ZipAndStreamFiles(out, fileNames, downloadDirPath + "/"); if (!stream) { File newZip = new File(EPADConfig.getEPADWebServerResourcesDir() + downloadDirName, zipName); zipFile.renameTo(newZip); EPADFile epadFile = new EPADFile("", "", "", "", "", zipName, zipFile.length(), "Project", formatDate(new Date()), downloadDirName + zipFile.getName(), true, projectReference.projectID); PrintWriter responseStream = httpResponse.getWriter(); responseStream.append(epadFile.toJSON()); } EPADFileUtils.deleteDirectoryAndContents(downloadDir); }
From source file:edu.stanford.epad.epadws.handlers.dicom.DownloadUtil.java
/** * Method to download multiple Subject dicoms * //from ww w .ja v a 2 s . c om * @author Emel Alkim * @param stream - true if file should stream, otherwise placed on disk to be picked (should be deleted after use) * @param httpResponse * @param subjectReference * @param username * @param sessionID * @param searchFilter * @param subjectUIDs - download only these selected subjects * @throws Exception */ public static void downloadSubjects(boolean stream, HttpServletResponse httpResponse, String subjectUIDs, String username, String sessionID, EPADSearchFilter searchFilter, boolean includeAIMs, String projectID) throws Exception { log.info("Downloading subjects:" + subjectUIDs + " stream:" + stream); Set<String> subjects = new HashSet<String>(); if (subjectUIDs != null) { String[] ids = subjectUIDs.split(","); for (String id : ids) subjects.add(id.trim()); } String downloadDirPath = EPADConfig.getEPADWebServerResourcesDir() + downloadDirName + "temp" + Long.toString(System.currentTimeMillis()); File downloadDir = new File(downloadDirPath); downloadDir.mkdirs(); EpadOperations epadOperations = DefaultEpadOperations.getInstance(); List<String> fileNames = new ArrayList<String>(); //TODO ml change the static numbers //subjects for (String subjectID : subjects) { SubjectReference subjectReference = new SubjectReference(projectID, subjectID); EPADSubject subject = epadOperations.getSubjectDescription(subjectReference, username, sessionID); if (!subjects.isEmpty() && !subjects.contains(subject.subjectID)) continue; File subjectDir = new File(downloadDir, "Subject-" + subject.subjectID); subjectDir.mkdirs(); //studies EPADStudyList studyList = epadOperations.getStudyDescriptions(subjectReference, username, sessionID, searchFilter); for (EPADStudy study : studyList.ResultSet.Result) { File studyDir = new File(subjectDir, "Study-" + study.studyUID); studyDir.mkdirs(); StudyReference studyReference = new StudyReference(subjectReference.projectID, subjectReference.subjectID, study.studyUID); //series EPADSeriesList seriesList = epadOperations.getSeriesDescriptions(studyReference, username, sessionID, searchFilter, false); for (EPADSeries series : seriesList.ResultSet.Result) { File seriesDir = new File(studyDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); SeriesReference seriesReference = new SeriesReference(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); EPADImageList imageList = new EPADImageList(); try { imageList = epadOperations.getImageDescriptions(seriesReference, sessionID, null); } catch (Exception x) { } for (EPADImage image : imageList.ResultSet.Result) { String name = image.imageUID + ".dcm"; File imageFile = new File(seriesDir, name); fileNames.add("Subject-" + subjectReference.subjectID + "/Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileOutputStream fos = null; try { fos = new FileOutputStream(imageFile); String queryString = "requestType=WADO&studyUID=" + seriesReference.studyUID + "&seriesUID=" + seriesReference.seriesUID + "&objectUID=" + image.imageUID + "&contentType=application/dicom"; performWADOQuery(queryString, fos, username, sessionID); } catch (Exception x) { log.warning("Error downloading image using wado", x); } finally { if (fos != null) fos.close(); } } //ml include aims copied from series if (includeAIMs) { EPADAIMList aimList = epadOperations.getSeriesAIMDescriptions(seriesReference, username, sessionID); aimList = AIMUtil.filterPermittedImageAnnotations(aimList, username, sessionID); for (EPADAIM aim : aimList.ResultSet.Result) { String name = "Aim_" + format4Filename(subject.subjectName) + "_" + aim.aimID + ".xml"; File aimFile = new File(seriesDir, name); fileNames.add("Subject-" + subjectReference.subjectID + "/Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileWriter fw = null; try { fw = new FileWriter(aimFile); // fw.write(aim.xml); fw.write(formatXMLtoLatest(aim.xml)); } catch (Exception x) { log.warning("Error writing aim file"); } finally { if (fw != null) fw.close(); } } } } } } String zipName = "Subjects-" + subjectUIDs + ".zip"; if (stream) { httpResponse.setContentType("application/zip"); httpResponse.setHeader("Content-Disposition", "attachment;filename=\"" + zipName + "\""); } File zipFile = null; OutputStream out = null; try { if (stream) { out = httpResponse.getOutputStream(); } else { zipFile = new File(downloadDir, zipName); out = new FileOutputStream(zipFile); } } catch (Exception e) { log.warning("Error getting output stream", e); throw e; } ZipAndStreamFiles(out, fileNames, downloadDirPath + "/"); if (!stream) { File newZip = new File(EPADConfig.getEPADWebServerResourcesDir() + downloadDirName, zipName); zipFile.renameTo(newZip); EPADFile epadFile = new EPADFile("", "", "", "", "", zipName, zipFile.length(), "Subjects", formatDate(new Date()), downloadDirName + zipFile.getName(), true, subjectUIDs); PrintWriter responseStream = httpResponse.getWriter(); responseStream.append(epadFile.toJSON()); } EPADFileUtils.deleteDirectoryAndContents(downloadDir); }
From source file:jmap2gml.ScriptGui.java
/** * Formats the window, initializes the JMap2Script object, and sets up all * the necessary events.//from w w w .j av a2 s . c om */ public ScriptGui() { setTitle("jmap to gml script converter"); setDefaultCloseOperation(EXIT_ON_CLOSE); getContentPane().setLayout(new GridBagLayout()); this.addWindowListener(new WindowListener() { @Override public void windowOpened(WindowEvent we) { } @Override public void windowClosing(WindowEvent we) { saveConfig(); } @Override public void windowClosed(WindowEvent we) { } @Override public void windowIconified(WindowEvent we) { } @Override public void windowDeiconified(WindowEvent we) { } @Override public void windowActivated(WindowEvent we) { } @Override public void windowDeactivated(WindowEvent we) { } }); GridBagConstraints c = new GridBagConstraints(); setResizable(true); setIconImage((new ImageIcon("spikeup.png")).getImage()); jta = new JTextArea(38, 30); loadConfig(); JScrollPane jsp = new JScrollPane(jta); jsp.setRowHeaderView(new TextLineNumber(jta)); jsp.setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); jsp.setVerticalScrollBarPolicy(JScrollPane.VERTICAL_SCROLLBAR_AS_NEEDED); jsp.setSize(jsp.getWidth(), 608); // menu bar JMenuBar menubar = new JMenuBar(); // file menu JMenu file = new JMenu("File"); // load button JMenuItem load = new JMenuItem("Load jmap"); load.addActionListener(ae -> { JFileChooser fileChooser = new JFileChooser(prevDirectory); fileChooser.setFileFilter(new FileNameExtensionFilter("jmap file", "jmap", "jmap")); int returnValue = fileChooser.showOpenDialog(null); if (returnValue == JFileChooser.APPROVE_OPTION) { File selectedFile = fileChooser.getSelectedFile(); prevDirectory = selectedFile.getAbsolutePath(); jm2s = new ScriptFromJmap(selectedFile.getPath(), false); jta.setText(""); jta.append(jm2s.toString()); jta.setCaretPosition(0); writeFile.setEnabled(true); drawPanel.setItems(jta.getText().split("\n")); } }); // add load to file menu file.add(load); // button to save script to file writeFile = new JMenuItem("Write file"); writeFile.addActionListener(ae -> { if (jm2s != null) { PrintWriter out; try { File f = new File( jm2s.getFileName().substring(0, jm2s.getFileName().lastIndexOf(".jmap")) + ".gml"); out = new PrintWriter(f); out.append(jm2s.toString()); out.close(); } catch (FileNotFoundException ex) { Logger.getLogger(ScriptGui.class.getName()).log(Level.SEVERE, null, ex); } } }); writeFile.setEnabled(false); JMenuItem gmx = new JMenuItem("Export as gmx"); gmx.addActionListener(ae -> { String fn = String.format("%s.room.gmx", prevDirectory); JFileChooser fc = new JFileChooser(prevDirectory); fc.setSelectedFile(new File(fn)); fc.setFileFilter(new FileNameExtensionFilter("Game Maker XML", "gmx", "gmx")); fc.showDialog(null, "Save"); File f = fc.getSelectedFile(); if (f != null) { try { GMX.itemsToGMX(drawPanel.items, new FileOutputStream(f)); } catch (FileNotFoundException ex) { Logger.getLogger(ScriptGui.class.getName()).log(Level.SEVERE, null, ex); } } }); // add to file menu file.add(writeFile); file.add(gmx); // add file menu to the menubar menubar.add(file); // Edit menu // display menu JMenu display = new JMenu("Display"); JMenuItem update = new JMenuItem("Update"); update.addActionListener(ae -> { drawPanel.setItems(jta.getText().split("\n")); }); display.add(update); JMenuItem gridToggle = new JMenuItem("Toggle Grid"); gridToggle.addActionListener(ae -> { drawPanel.toggleGrid(); }); display.add(gridToggle); JMenuItem gridOptions = new JMenuItem("Modify Grid"); gridOptions.addActionListener(ae -> { drawPanel.modifyGrid(); }); display.add(gridOptions); menubar.add(display); // sets the menubar setJMenuBar(menubar); // add the text area to the window c.gridx = 0; c.gridy = 0; add(jsp, c); // initialize the preview panel drawPanel = new Preview(this); JScrollPane scrollPane = new JScrollPane(drawPanel); // add preview panel to the window c.gridx = 1; c.gridwidth = 2; add(scrollPane, c); pack(); setMinimumSize(this.getSize()); setLocationRelativeTo(null); setVisible(true); drawPanel.setItems(jta.getText().split("\n")); }
From source file:com.ifeng.computing.batch.job.writer.NewsItemFlatFileItemWriter.java
@Override public void write(List<? extends List<NewsItem>> items) throws Exception { PrintWriter pw = new PrintWriter(new File("sub_data.csv")); StringBuilder sb = null;// w w w. ja v a 2s . c o m for (List<NewsItem> news : items) { for (NewsItem item : news) { sb = new StringBuilder(""); sb.append(item.getId()); sb.append(","); sb.append(item.getCategory()); sb.append(","); sb.append(item.getHotLevel()); sb.append(","); sb.append(item.getpId()); sb.append(","); sb.append(item.getSimScore()); pw.append(sb.toString()); pw.println(); } } pw.flush(); pw.close(); }
From source file:org.silverpeas.core.contribution.content.form.displayers.AbstractFileFieldDisplayer.java
/** * Prints the javascripts which will be used to control the new value given to the named field. * The error messages may be adapted to a local language. The FieldTemplate gives the field type * and constraints. The FieldTemplate gives the local labeld too. Never throws an Exception but * log a silvertrace and writes an empty string when : * <ul>/* w w w . ja va 2 s .c om*/ * <li>the fieldName is unknown by the template.</li> * <li>the field type is not a managed type.</li> * </ul> */ @Override public void displayScripts(final PrintWriter out, final FieldTemplate template, final PagesContext pageContext) throws IOException { checkFieldType(template.getTypeName(), "AbstractFileFieldDisplayer.displayScripts"); String language = pageContext.getLanguage(); String fieldName = template.getFieldName(); if (template.isMandatory() && pageContext.useMandatory()) { out.append(" if (isWhitespace(stripInitialWhitespace(field.value))) {\n").append(" var ") .append(fieldName).append("Value = document.getElementById('").append(fieldName) .append(FileField.PARAM_ID_SUFFIX).append("').value;\n").append(" var ").append(fieldName) .append("Operation = document.").append(pageContext.getFormName()).append(".").append(fieldName) .append(OPERATION_KEY).append(".value;\n").append(" if (").append(fieldName) .append("Value=='' || ").append(fieldName).append("Operation=='") .append(Operation.DELETION.name()).append("') {\n").append(" errorMsg+=\" - '") .append(WebEncodeHelper.javaStringToJsString(template.getLabel(language))).append("' ") .append(Util.getString("GML.MustBeFilled", language)).append("\\n\";\n") .append(" errorNb++;\n").append(" }\n").append(" }\n"); } if (!template.isReadOnly()) { Util.includeFileNameLengthChecker(template, pageContext, out); Util.getJavascriptChecker(template.getFieldName(), pageContext, out); } }
From source file:edu.stanford.epad.epadws.handlers.dicom.DownloadUtil.java
/** * Method to download list of Study dicoms * //w w w.ja v a 2 s . c o m * @param stream - true if file should stream, otherwise placed on disk to be picked (should be deleted after use) * @param httpResponse * @param subjectReference * @param username * @param sessionID * @param searchFilter * @param studyUIDs - download only these selected studies * @param projectID * @throws Exception */ public static void downloadStudies(boolean stream, HttpServletResponse httpResponse, String studyUIDs, String username, String sessionID, boolean includeAIMs, String projectID) throws Exception { log.info("Downloading studies:" + studyUIDs + " stream:" + stream); Set<String> studies = new HashSet<String>(); if (studyUIDs != null) { String[] ids = studyUIDs.split(","); for (String id : ids) studies.add(id.trim()); } String downloadDirPath = EPADConfig.getEPADWebServerResourcesDir() + downloadDirName + "temp" + Long.toString(System.currentTimeMillis()); File downloadDir = new File(downloadDirPath); downloadDir.mkdirs(); EpadOperations epadOperations = DefaultEpadOperations.getInstance(); EpadProjectOperations projectOperations = DefaultEpadProjectOperations.getInstance(); EpadDatabaseOperations databaseOperations = EpadDatabase.getInstance().getEPADDatabaseOperations(); List<String> fileNames = new ArrayList<String>(); for (String studyUID : studies) { if (studyUID.length() == 0) continue; File studyDir = new File(downloadDir, "Study-" + studyUID); studyDir.mkdirs(); StudyReference studyReference = new StudyReference(projectID, null, studyUID); EPADStudy study = epadOperations.getStudyDescription(studyReference, username, sessionID); if (study == null) throw new Exception("Study not found:" + studyReference.studyUID); studyReference = new StudyReference(projectID, study.patientID, studyUID); EPADSeriesList seriesList = epadOperations.getSeriesDescriptions(studyReference, username, sessionID, new EPADSearchFilter(), false); for (EPADSeries series : seriesList.ResultSet.Result) { if (series.isNonDicomSeries) { File seriesDir = new File(studyDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); List<EpadFile> files = projectOperations.getSeriesFiles(projectID, null, studyUID, series.seriesUID); for (EpadFile file : files) { String name = file.getName(); File epadFile = new File(seriesDir, name); EPADFileUtils.copyFile( new File(EPADConfig.getEPADWebServerResourcesDir() + getEpadFilePath(file)), epadFile); } continue; } if (series.isDSO) { try { List<EPADAIM> aims = databaseOperations.getAIMsByDSOSeries(series.seriesUID); boolean skip = true; for (EPADAIM aim : aims) { if (aim.userName.equalsIgnoreCase(username)) skip = false; } if (skip) continue; } catch (Exception x) { } ; } File seriesDir = new File(studyDir, "Series-" + series.seriesUID); seriesDir.mkdirs(); SeriesReference seriesReference = new SeriesReference(studyReference.projectID, studyReference.subjectID, studyReference.studyUID, series.seriesUID); EPADImageList imageList = new EPADImageList(); try { imageList = epadOperations.getImageDescriptions(seriesReference, sessionID, null); } catch (Exception x) { } for (EPADImage image : imageList.ResultSet.Result) { String name = image.imageUID + ".dcm"; File imageFile = new File(seriesDir, name); fileNames.add("Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileOutputStream fos = null; try { fos = new FileOutputStream(imageFile); String queryString = "requestType=WADO&studyUID=" + seriesReference.studyUID + "&seriesUID=" + seriesReference.seriesUID + "&objectUID=" + image.imageUID + "&contentType=application/dicom"; performWADOQuery(queryString, fos, username, sessionID); } catch (Exception x) { log.warning("Error downloading image using wado"); } finally { if (fos != null) fos.close(); } } if (includeAIMs) { EPADAIMList aimList = epadOperations.getSeriesAIMDescriptions(seriesReference, username, sessionID); aimList = AIMUtil.filterPermittedImageAnnotations(aimList, username, sessionID); for (EPADAIM aim : aimList.ResultSet.Result) { //String name = "Aim_" + aim.aimID + ".xml"; String name = "Aim_" + format4Filename(study.patientName) + "_" + aim.aimID + ".xml"; File aimFile = new File(seriesDir, name); fileNames.add( "Study-" + studyReference.studyUID + "/Series-" + series.seriesUID + "/" + name); FileWriter fw = null; try { fw = new FileWriter(aimFile); fw.write(formatXMLtoLatest(aim.xml)); } catch (Exception x) { log.warning("Error writing aim file"); } finally { if (fw != null) fw.close(); } } } } } String ids = studyUIDs.replace(",", "-"); if (ids.length() > 128) ids = ids.substring(0, 128); String zipName = "Studies-" + ids + ".zip"; if (stream) { httpResponse.setContentType("application/zip"); httpResponse.setHeader("Content-Disposition", "attachment;filename=\"" + zipName + "\""); } File zipFile = null; OutputStream out = null; try { if (stream) { out = httpResponse.getOutputStream(); } else { zipFile = new File(downloadDir, zipName); out = new FileOutputStream(zipFile); } } catch (Exception e) { log.warning("Error getting output stream", e); throw e; } ZipAndStreamFiles(out, fileNames, downloadDirPath + "/"); if (!stream) { File newZip = new File(EPADConfig.getEPADWebServerResourcesDir() + downloadDirName, zipName); zipFile.renameTo(newZip); EPADFile epadFile = new EPADFile("", "", "", "", "", zipName, zipFile.length(), "Studies", formatDate(new Date()), downloadDirName + zipFile.getName(), true, studyUIDs); PrintWriter responseStream = httpResponse.getWriter(); responseStream.append(epadFile.toJSON()); } EPADFileUtils.deleteDirectoryAndContents(downloadDir); }