List of usage examples for java.io FileReader FileReader
public FileReader(FileDescriptor fd)
From source file:edu.cornell.med.icb.goby.reads.ColorSpaceConverter.java
public static void main(final String[] args) throws JSAPException, IOException { final JSAP jsap = new JSAP(); final FlaggedOption sequenceOption = new FlaggedOption("input"); sequenceOption.setRequired(true);/* ww w. j av a 2 s . c o m*/ sequenceOption.setLongFlag("input"); sequenceOption.setShortFlag('i'); sequenceOption.setStringParser(FileStringParser.getParser().setMustBeFile(true).setMustExist(true)); sequenceOption.setHelp("The input file (in Fasta format) to convert"); jsap.registerParameter(sequenceOption); final FlaggedOption outputOption = new FlaggedOption("output"); outputOption.setRequired(false); outputOption.setLongFlag("output"); outputOption.setShortFlag('o'); outputOption.setStringParser(FileStringParser.getParser().setMustBeFile(true)); outputOption.setHelp("The output file to write to (default = stdout)"); jsap.registerParameter(outputOption); final FlaggedOption titleOption = new FlaggedOption("title"); titleOption.setRequired(false); titleOption.setLongFlag("title"); titleOption.setShortFlag('t'); titleOption.setHelp("Title for this conversion"); jsap.registerParameter(titleOption); final Switch verboseOption = new Switch("verbose"); verboseOption.setLongFlag("verbose"); verboseOption.setShortFlag('v'); verboseOption.setHelp("Verbose output"); jsap.registerParameter(verboseOption); final Switch helpOption = new Switch("help"); helpOption.setLongFlag("help"); helpOption.setShortFlag('h'); helpOption.setHelp("Print this message"); jsap.registerParameter(helpOption); jsap.setUsage("Usage: " + ColorSpaceConverter.class.getName() + " " + jsap.getUsage()); final JSAPResult result = jsap.parse(args); if (result.getBoolean("help")) { System.out.println(jsap.getHelp()); System.exit(0); } if (!result.success()) { final Iterator<String> errors = result.getErrorMessageIterator(); while (errors.hasNext()) { System.err.println(errors.next()); } System.err.println(jsap.getUsage()); System.exit(1); } final boolean verbose = result.getBoolean("verbose"); final File sequenceFile = result.getFile("input"); if (verbose) { System.out.println("Reading sequence from: " + sequenceFile); } // extract the title to use for the output header final String title; if (result.contains("title")) { title = result.getString("title"); } else { title = sequenceFile.getName(); } Reader inputReader = null; PrintWriter outputWriter = null; try { if ("gz".equals(FilenameUtils.getExtension(sequenceFile.getName()))) { inputReader = new InputStreamReader(new GZIPInputStream(FileUtils.openInputStream(sequenceFile))); } else { inputReader = new FileReader(sequenceFile); } final FastaParser fastaParser = new FastaParser(inputReader); final File outputFile = result.getFile("output"); final OutputStream outputStream; if (outputFile != null) { outputStream = FileUtils.openOutputStream(outputFile); if (verbose) { System.out.println("Writing sequence : " + outputFile); } } else { outputStream = System.out; } outputWriter = new PrintWriter(outputStream); // write the header portion of the output outputWriter.print("# "); outputWriter.print(new Date()); outputWriter.print(' '); outputWriter.print(ColorSpaceConverter.class.getName()); for (final String arg : args) { outputWriter.print(' '); outputWriter.print(arg); } outputWriter.println(); outputWriter.print("# Cwd: "); outputWriter.println(new File(".").getCanonicalPath()); outputWriter.print("# Title: "); outputWriter.println(title); // now parse the input sequence long sequenceCount = 0; final MutableString descriptionLine = new MutableString(); final MutableString sequence = new MutableString(); final MutableString colorSpaceSequence = new MutableString(); while (fastaParser.hasNext()) { fastaParser.next(descriptionLine, sequence); outputWriter.print('>'); outputWriter.println(descriptionLine); convert(sequence, colorSpaceSequence); CompactToFastaMode.writeSequence(outputWriter, colorSpaceSequence); sequenceCount++; if (verbose && sequenceCount % 10000 == 0) { System.out.println("Converted " + sequenceCount + " entries"); } } if (verbose) { System.out.println("Conversion complete!"); } } finally { IOUtils.closeQuietly(inputReader); IOUtils.closeQuietly(outputWriter); } }
From source file:com.twentyn.patentSearch.DocumentSearch.java
public static void main(String[] args) throws Exception { System.out.println("Starting up..."); System.out.flush();//from www.j a va 2 s . c o m Options opts = new Options(); opts.addOption(Option.builder("x").longOpt("index").hasArg().required().desc("Path to index file to read") .build()); opts.addOption(Option.builder("h").longOpt("help").desc("Print this help message and exit").build()); opts.addOption(Option.builder("v").longOpt("verbose").desc("Print verbose log output").build()); opts.addOption(Option.builder("f").longOpt("field").hasArg().desc("The indexed field to search").build()); opts.addOption( Option.builder("q").longOpt("query").hasArg().desc("The query to use when searching").build()); opts.addOption(Option.builder("l").longOpt("list-file").hasArg() .desc("A file containing a list of queries to run in sequence").build()); opts.addOption( Option.builder("e").longOpt("enumerate").desc("Enumerate the documents in the index").build()); opts.addOption(Option.builder("d").longOpt("dump").hasArg() .desc("Dump terms in the document index for a specified field").build()); opts.addOption( Option.builder("o").longOpt("output").hasArg().desc("Write results JSON to this file.").build()); opts.addOption(Option.builder("n").longOpt("inchi-field").hasArg() .desc("The index of the InChI field if an input TSV is specified.").build()); opts.addOption(Option.builder("s").longOpt("synonym-field").hasArg() .desc("The index of the chemical synonym field if an input TSV is specified.").build()); HelpFormatter helpFormatter = new HelpFormatter(); CommandLineParser cmdLineParser = new DefaultParser(); CommandLine cmdLine = null; try { cmdLine = cmdLineParser.parse(opts, args); } catch (ParseException e) { System.out.println("Caught exception when parsing command line: " + e.getMessage()); helpFormatter.printHelp("DocumentIndexer", opts); System.exit(1); } if (cmdLine.hasOption("help")) { helpFormatter.printHelp("DocumentIndexer", opts); System.exit(0); } if (!(cmdLine.hasOption("enumerate") || cmdLine.hasOption("dump") || (cmdLine.hasOption("field") && (cmdLine.hasOption("query") || cmdLine.hasOption("list-file"))))) { System.out.println("Must specify one of 'enumerate', 'dump', or 'field' + {'query', 'list-file'}"); helpFormatter.printHelp("DocumentIndexer", opts); System.exit(1); } if (cmdLine.hasOption("verbose")) { // With help from http://stackoverflow.com/questions/23434252/programmatically-change-log-level-in-log4j2 LoggerContext ctx = (LoggerContext) LogManager.getContext(false); Configuration ctxConfig = ctx.getConfiguration(); LoggerConfig logConfig = ctxConfig.getLoggerConfig(LogManager.ROOT_LOGGER_NAME); logConfig.setLevel(Level.DEBUG); ctx.updateLoggers(); LOGGER.debug("Verbose logging enabled"); } ObjectMapper objectMapper = new ObjectMapper(); objectMapper.enable(SerializationFeature.INDENT_OUTPUT); objectMapper.setVisibility(PropertyAccessor.ALL, JsonAutoDetect.Visibility.ANY); LOGGER.info("Opening index at " + cmdLine.getOptionValue("index")); try (Directory indexDir = FSDirectory.open(new File(cmdLine.getOptionValue("index")).toPath()); IndexReader indexReader = DirectoryReader.open(indexDir);) { if (cmdLine.hasOption("enumerate")) { /* Enumerate all documents in the index. * With help from * http://stackoverflow.com/questions/2311845/is-it-possible-to-iterate-through-documents-stored-in-lucene-index */ for (int i = 0; i < indexReader.maxDoc(); i++) { Document doc = indexReader.document(i); LOGGER.info("Doc " + i + ":"); LOGGER.info(doc); } } else if (cmdLine.hasOption("dump")) { /* Dump indexed terms for a specific field. * With help from http://stackoverflow.com/questions/11148036/find-list-of-terms-indexed-by-lucene */ Terms terms = SlowCompositeReaderWrapper.wrap(indexReader).terms(cmdLine.getOptionValue("dump")); LOGGER.info("Has positions: " + terms.hasPositions()); LOGGER.info("Has offsets: " + terms.hasOffsets()); LOGGER.info("Has freqs: " + terms.hasFreqs()); LOGGER.info("Stats: " + terms.getStats()); LOGGER.info(terms); TermsEnum termsEnum = terms.iterator(); BytesRef br = null; while ((br = termsEnum.next()) != null) { LOGGER.info(" " + br.utf8ToString()); } } else { IndexSearcher searcher = new IndexSearcher(indexReader); String field = cmdLine.getOptionValue("field"); List<Pair<String, String>> queries = null; if (cmdLine.hasOption("query")) { queries = Collections.singletonList(Pair.of("", cmdLine.getOptionValue("query"))); } else if (cmdLine.hasOption("list-file")) { if (!(cmdLine.hasOption("inchi-field") && cmdLine.hasOption("synonym-field"))) { LOGGER.error("Must specify both inchi-field and synonym-field when using list-file."); System.exit(1); } Integer inchiField = Integer.parseInt(cmdLine.getOptionValue("inchi-field")); Integer synonymField = Integer.parseInt(cmdLine.getOptionValue("synonym-field")); queries = new LinkedList<>(); BufferedReader r = new BufferedReader(new FileReader(cmdLine.getOptionValue("list-file"))); String line; while ((line = r.readLine()) != null) { line = line.trim(); if (!line.isEmpty()) { // TODO: use a proper TSV reader; this is intentionally terrible as is. String[] fields = line.split("\t"); queries.add(Pair.of(fields[inchiField].replace("\"", ""), fields[synonymField])); } } r.close(); } if (queries == null || queries.size() == 0) { LOGGER.error("Found no queries to run."); return; } List<SearchResult> searchResults = new ArrayList<>(queries.size()); for (Pair<String, String> queryPair : queries) { String inchi = queryPair.getLeft(); String rawQueryString = queryPair.getRight(); /* The Lucene query parser interprets the kind of structural annotations we see in chemical entities * as query directives, which is not what we want at all. Phrase queries seem to work adequately * with the analyzer we're currently using. */ String queryString = rawQueryString.trim().toLowerCase(); String[] parts = queryString.split("\\s+"); PhraseQuery query = new PhraseQuery(); for (String p : parts) { query.add(new Term(field, p)); } LOGGER.info("Running query: " + query.toString()); BooleanQuery bq = new BooleanQuery(); bq.add(query, BooleanClause.Occur.MUST); bq.add(new TermQuery(new Term(field, "yeast")), BooleanClause.Occur.SHOULD); bq.add(new TermQuery(new Term(field, "ferment")), BooleanClause.Occur.SHOULD); bq.add(new TermQuery(new Term(field, "fermentation")), BooleanClause.Occur.SHOULD); bq.add(new TermQuery(new Term(field, "fermentive")), BooleanClause.Occur.SHOULD); bq.add(new TermQuery(new Term(field, "saccharomyces")), BooleanClause.Occur.SHOULD); LOGGER.info(" Full query: " + bq.toString()); TopDocs topDocs = searcher.search(bq, 100); ScoreDoc[] scoreDocs = topDocs.scoreDocs; if (scoreDocs.length == 0) { LOGGER.info("Search returned no results."); } List<ResultDocument> results = new ArrayList<>(scoreDocs.length); for (int i = 0; i < scoreDocs.length; i++) { ScoreDoc scoreDoc = scoreDocs[i]; Document doc = indexReader.document(scoreDoc.doc); LOGGER.info("Doc " + i + ": " + scoreDoc.doc + ", score " + scoreDoc.score + ": " + doc.get("id") + ", " + doc.get("title")); results.add(new ResultDocument(scoreDoc.doc, scoreDoc.score, doc.get("title"), doc.get("id"), null)); } LOGGER.info("----- Done with query " + query.toString()); // TODO: reduce memory usage when not writing results to an output file. searchResults.add(new SearchResult(inchi, rawQueryString, bq, results)); } if (cmdLine.hasOption("output")) { try (FileWriter writer = new FileWriter(cmdLine.getOptionValue("output"));) { writer.write(objectMapper.writeValueAsString(searchResults)); } } } } }
From source file:Main.java
public static String readToString(File file) throws IOException { if (file == null || !file.exists()) { return null; }//from ww w. ja v a 2 s . c o m FileReader reader = new FileReader(file); StringBuilder out = new StringBuilder(); char[] buffer = new char[1024 * 4]; int numRead = 0; while ((numRead = reader.read(buffer)) > -1) { out.append(String.valueOf(buffer, 0, numRead)); } reader.close(); return out.toString(); }
From source file:com.bitplantoon.common.factory.PropFactory.java
public static Map getYMLProperties(String moduleName) { try {// ww w . j a va2s. c om String location = System.getProperty("yaml.properties.directory"); if (StringUtils.isBlank(location)) { //SET DEFAULT LOCATION location = "/tmp/system.8bitplantoon/properties/"; } return (Map) new Yaml() .load(new BufferedReader(new FileReader(new File(location + "/" + moduleName + ".yml")))); } catch (FileNotFoundException ex) { throw new RuntimeException("The YML file for " + moduleName + " was not found, ensure its within you resources/properties forlder"); } }
From source file:Main.java
/** * Converts a TimeML 1.2 file into a non-tagged TE3 TimeML input * get TE3-input, TE3input from tml/*from w ww. j a v a 2 s. c o m*/ * * @param tmlfile * @return */ public static String TML2TE3(String tmlfile) { String outputfile = null; try { String line; boolean textfound = false; String header = ""; String footer = ""; String text = ""; //process header (and dct)/text/footer outputfile = tmlfile + ".TE3input"; BufferedWriter te3writer = new BufferedWriter(new FileWriter(new File(outputfile))); BufferedReader TE3inputReader = new BufferedReader(new FileReader(new File(tmlfile))); try { // read out header while ((line = TE3inputReader.readLine()) != null) { if (line.length() > 0) { // break on TEXT if (line.matches(".*<TEXT>.*")) { textfound = true; break; } } header += line + "\n"; } if (!textfound) { throw new Exception("Premature end of file (" + tmlfile + ")"); } // read out text while ((line = TE3inputReader.readLine()) != null) { if (line.length() > 0) { // break on TEXT if (line.matches(".*</TEXT>.*")) { textfound = false; break; } } text += line.replaceAll("<[^>]*>", "") + "\n"; } if (textfound) { throw new Exception("Premature end of file (" + tmlfile + ")"); } // read out footer while ((line = TE3inputReader.readLine()) != null) { line = line.replaceAll("<(!--|[TSA]LINK|MAKEINSTANCE)[^>]*>", "").trim(); if (line.length() > 0) { footer += line + "\n"; } } te3writer.write(header + "\n"); te3writer.write("\n<TEXT>\n" + text + "</TEXT>\n"); te3writer.write(footer + "\n"); System.err.println("Processing file: " + tmlfile); } finally { if (TE3inputReader != null) { TE3inputReader.close(); } if (te3writer != null) { te3writer.close(); } } } catch (Exception e) { System.err.println("Errors found (TML_file_utils):\n\t" + e.toString() + "\n"); if (System.getProperty("DEBUG") != null && System.getProperty("DEBUG").equalsIgnoreCase("true")) { e.printStackTrace(System.err); } return null; } return outputfile; }
From source file:com.adobe.aem.demo.communities.Loader.java
public static void main(String[] args) { String hostname = null;/*from www .j a v a 2 s . co m*/ String port = null; String altport = null; String csvfile = null; String location = null; String language = "en"; String analytics = null; String adminPassword = "admin"; String[] url = new String[10]; // Handling 10 levels maximum for nested comments boolean reset = false; boolean configure = false; int urlLevel = 0; int row = 0; HashMap<String, ArrayList<String>> learningpaths = new HashMap<String, ArrayList<String>>(); // Command line options for this tool Options options = new Options(); options.addOption("h", true, "Hostname"); options.addOption("p", true, "Port"); options.addOption("a", true, "Alternate Port"); options.addOption("f", true, "CSV file"); options.addOption("r", false, "Reset"); options.addOption("u", true, "Admin Password"); options.addOption("c", false, "Configure"); options.addOption("s", true, "Analytics Endpoint"); options.addOption("t", false, "Analytics Tracking"); CommandLineParser parser = new BasicParser(); try { CommandLine cmd = parser.parse(options, args); if (cmd.hasOption("h")) { hostname = cmd.getOptionValue("h"); } if (cmd.hasOption("p")) { port = cmd.getOptionValue("p"); } if (cmd.hasOption("a")) { altport = cmd.getOptionValue("a"); } if (cmd.hasOption("f")) { csvfile = cmd.getOptionValue("f"); } if (cmd.hasOption("u")) { adminPassword = cmd.getOptionValue("u"); } if (cmd.hasOption("t")) { if (cmd.hasOption("s")) { analytics = cmd.getOptionValue("s"); } } if (cmd.hasOption("r")) { reset = true; } if (cmd.hasOption("c")) { configure = true; } if (csvfile == null || port == null || hostname == null) { System.out.println( "Request parameters: -h hostname -p port -a alternateport -u adminPassword -f path_to_CSV_file -r (true|false, delete content before import) -c (true|false, post additional properties)"); System.exit(-1); } } catch (ParseException ex) { logger.error(ex.getMessage()); } String componentType = null; try { logger.debug("AEM Demo Loader: Processing file " + csvfile); // Reading the CSV file, line by line Reader in = new FileReader(csvfile); Iterable<CSVRecord> records = CSVFormat.EXCEL.parse(in); for (CSVRecord record : records) { row = row + 1; logger.info("Row: " + row + ", new record: " + record.get(0)); // Let's see if we deal with a comment if (record.get(0).startsWith("#")) { // We can ignore the comment line and move on continue; } // Let's see if we need to terminate this process if (record.get(0).equals(KILL)) { System.exit(1); } // Let's see if we need to create a new Community site if (record.get(0).equals(SITE)) { // Building the form entity to be posted MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.addTextBody(":operation", "social:createSite", ContentType.create("text/plain", MIME.UTF8_CHARSET)); builder.addTextBody("_charset_", "UTF-8", ContentType.create("text/plain", MIME.UTF8_CHARSET)); String urlName = null; for (int i = 2; i < record.size() - 1; i = i + 2) { if (record.get(i) != null && record.get(i + 1) != null && record.get(i).length() > 0) { String name = record.get(i).trim(); String value = record.get(i + 1).trim(); if (value.equals("TRUE")) { value = "true"; } if (value.equals("FALSE")) { value = "false"; } if (name.equals("urlName")) { urlName = value; } if (name.equals(LANGUAGE)) { language = value; } if (name.equals(BANNER)) { File attachment = new File( csvfile.substring(0, csvfile.indexOf(".csv")) + File.separator + value); builder.addBinaryBody(BANNER, attachment, ContentType.MULTIPART_FORM_DATA, attachment.getName()); } else if (name.equals(THUMBNAIL)) { File attachment = new File( csvfile.substring(0, csvfile.indexOf(".csv")) + File.separator + value); builder.addBinaryBody(THUMBNAIL, attachment, ContentType.MULTIPART_FORM_DATA, attachment.getName()); } else { builder.addTextBody(name, value, ContentType.create("text/plain", MIME.UTF8_CHARSET)); } } } // Site creation String siteId = doPost(hostname, port, "/content.social.json", "admin", adminPassword, builder.build(), "response/siteId"); // Site publishing, if there's a publish instance to publish to if (!port.equals(altport)) { List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(); nameValuePairs.add(new BasicNameValuePair("id", "nobot")); nameValuePairs.add(new BasicNameValuePair(":operation", "social:publishSite")); nameValuePairs .add(new BasicNameValuePair("path", "/content/sites/" + urlName + "/" + language)); doPost(hostname, port, "/communities/sites.html", "admin", adminPassword, new UrlEncodedFormEntity(nameValuePairs), null); // Wait for site to be available on Publish doWait(hostname, altport, "admin", adminPassword, (siteId != null ? siteId : urlName) + "-groupadministrators"); } continue; } // Let's see if we need to create a new Tag if (record.get(0).equals(TAG)) { // Building the form entity to be posted MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.addTextBody("_charset_", "UTF-8", ContentType.create("text/plain", MIME.UTF8_CHARSET)); for (int i = 1; i < record.size() - 1; i = i + 2) { if (record.get(i) != null && record.get(i + 1) != null && record.get(i).length() > 0 && record.get(i + 1).length() > 0) { String name = record.get(i).trim(); String value = record.get(i + 1).trim(); builder.addTextBody(name, value, ContentType.create("text/plain", MIME.UTF8_CHARSET)); } } // Tag creation doPost(hostname, port, "/bin/tagcommand", "admin", adminPassword, builder.build(), null); continue; } // Let's see if we need to create a new Community site template, and if we can do it (script run against author instance) if (record.get(0).equals(SITETEMPLATE)) { // Building the form entity to be posted MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.addTextBody(":operation", "social:createSiteTemplate", ContentType.create("text/plain", MIME.UTF8_CHARSET)); builder.addTextBody("_charset_", "UTF-8", ContentType.create("text/plain", MIME.UTF8_CHARSET)); for (int i = 2; i < record.size() - 1; i = i + 2) { if (record.get(i) != null && record.get(i + 1) != null && record.get(i).length() > 0) { String name = record.get(i).trim(); String value = record.get(i + 1).trim(); builder.addTextBody(name, value, ContentType.create("text/plain", MIME.UTF8_CHARSET)); } } // Site template creation doPost(hostname, port, "/content.social.json", "admin", adminPassword, builder.build(), null); continue; } // Let's see if we need to create a new Community group if (record.get(0).equals(GROUP)) { // Building the form entity to be posted MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.addTextBody(":operation", "social:createCommunityGroup", ContentType.create("text/plain", MIME.UTF8_CHARSET)); builder.addTextBody("_charset_", "UTF-8", ContentType.create("text/plain", MIME.UTF8_CHARSET)); for (int i = 3; i < record.size() - 1; i = i + 2) { if (record.get(i) != null && record.get(i + 1) != null && record.get(i).length() > 0) { String name = record.get(i).trim(); String value = record.get(i + 1).trim(); if (value.equals("TRUE")) { value = "true"; } if (value.equals("FALSE")) { value = "false"; } if (name.equals(IMAGE)) { File attachment = new File( csvfile.substring(0, csvfile.indexOf(".csv")) + File.separator + value); builder.addBinaryBody(IMAGE, attachment, ContentType.MULTIPART_FORM_DATA, attachment.getName()); } else { builder.addTextBody(name, value, ContentType.create("text/plain", MIME.UTF8_CHARSET)); } } } // Group creation String memberGroupId = doPost(hostname, port, record.get(1), getUserName(record.get(2)), getPassword(record.get(2), adminPassword), builder.build(), "response/memberGroupId"); // Wait for group to be available on Publish, if available logger.debug("Waiting for completion of Community Group creation"); doWait(hostname, port, "admin", adminPassword, memberGroupId); continue; } // Let's see if it's simple Sling Delete request if (record.get(0).equals(SLINGDELETE)) { doDelete(hostname, port, record.get(1), "admin", adminPassword); continue; } // Let's see if we need to add users to an AEM Group if ((record.get(0).equals(GROUPMEMBERS) || record.get(0).equals(SITEMEMBERS)) && record.get(GROUP_INDEX_NAME) != null) { // Checking if we have a member group for this site String groupName = record.get(GROUP_INDEX_NAME); if (record.get(0).equals(SITEMEMBERS)) { // Let's fetch the siteId for this Community Site Url String siteConfig = doGet(hostname, port, groupName, "admin", adminPassword, null); try { String siteId = new JSONObject(siteConfig).getString("siteId"); if (siteId != null) groupName = "community-" + siteId + "-members"; logger.debug("Member group name is " + groupName); } catch (Exception e) { logger.error(e.getMessage()); } } // Pause until the group can found doWait(hostname, port, "admin", adminPassword, groupName); List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(); nameValuePairs.add(new BasicNameValuePair("filter", "[{\"operation\":\"like\",\"rep:principalName\":\"" + groupName + "\"}]")); nameValuePairs.add(new BasicNameValuePair("type", "groups")); String groupList = doGet(hostname, port, "/libs/social/console/content/content/userlist.social.0.10.json", "admin", adminPassword, nameValuePairs); logger.debug("List of groups" + groupList); if (groupList.indexOf(groupName) > 0) { logger.debug("Group was found on " + port); try { JSONArray jsonArray = new JSONObject(groupList).getJSONArray("items"); if (jsonArray.length() == 1) { JSONObject jsonObject = jsonArray.getJSONObject(0); String groupPath = jsonObject.getString("path"); logger.debug("Group path is " + groupPath); // Constructing a multi-part POST for group membership MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.setMode(HttpMultipartMode.BROWSER_COMPATIBLE); List<NameValuePair> groupNameValuePairs = buildNVP(record, 2); for (NameValuePair nameValuePair : groupNameValuePairs) { builder.addTextBody(nameValuePair.getName(), nameValuePair.getValue(), ContentType.create("text/plain", MIME.UTF8_CHARSET)); } // Adding the list of group members doPost(hostname, port, groupPath + ".rw.userprops.html", "admin", adminPassword, builder.build(), null); } else { logger.info("We have more than one match for a group with this name!"); } } catch (Exception e) { logger.error(e.getMessage()); } } continue; } // Let's see if it's user related if (record.get(0).equals(USERS)) { //First we need to get the path to the user node String json = doGet(hostname, port, "/libs/granite/security/currentuser.json", getUserName(record.get(1)), getPassword(record.get(1), adminPassword), null); if (json != null) { try { // Fetching the home property String home = new JSONObject(json).getString("home"); if (record.get(2).equals(PREFERENCES)) { home = home + "/preferences"; } else { home = home + "/profile"; } logger.debug(home); // Now we can post all the preferences or the profile List<NameValuePair> nameValuePairs = buildNVP(record, 3); doPost(hostname, port, home, "admin", adminPassword, new UrlEncodedFormEntity(nameValuePairs), null); } catch (Exception e) { logger.error(e.getMessage()); } } continue; } // Let's see if we deal with a new block of content or just a new entry if (record.get(0).equals(CALENDAR) || record.get(0).equals(SLINGPOST) || record.get(0).equals(RATINGS) || record.get(0).equals(BLOG) || record.get(0).equals(JOURNAL) || record.get(0).equals(COMMENTS) || record.get(0).equals(REVIEWS) || record.get(0).equals(FILES) || record.get(0).equals(SUMMARY) || record.get(0).equals(ACTIVITIES) || record.get(0).equals(JOIN) || record.get(0).equals(FOLLOW) || record.get(0).equals(MESSAGE) || record.get(0).equals(ASSET) || record.get(0).equals(AVATAR) || record.get(0).equals(RESOURCE) || record.get(0).equals(LEARNING) || record.get(0).equals(QNA) || record.get(0).equals(FORUM)) { // New block of content, we need to reset the processing to first Level componentType = record.get(0); url[0] = record.get(1); urlLevel = 0; if (!componentType.equals(SLINGPOST) && reset) { int pos = record.get(1).indexOf("/jcr:content"); if (pos > 0) doDelete(hostname, port, "/content/usergenerated" + record.get(1).substring(0, pos), "admin", adminPassword); } // If the Configure command line flag is set, we try to configure the component with all options enabled if (componentType.equals(SLINGPOST) || configure) { String configurePath = getConfigurePath(record.get(1)); List<NameValuePair> nameValuePairs = buildNVP(record, 2); if (nameValuePairs.size() > 2) // Only do this when really have configuration settings doPost(hostname, port, configurePath, "admin", adminPassword, new UrlEncodedFormEntity(nameValuePairs), null); } // We're done with this line, moving on to the next line in the CSV file continue; } // Let's see if we need to indent the list, if it's a reply or a reply to a reply if (record.get(1).length() != 1) continue; // We need a valid level indicator if (Integer.parseInt(record.get(1)) > urlLevel) { url[++urlLevel] = location; logger.debug("Incremented urlLevel to: " + urlLevel + ", with a new location:" + location); } else if (Integer.parseInt(record.get(1)) < urlLevel) { urlLevel = Integer.parseInt(record.get(1)); logger.debug("Decremented urlLevel to: " + urlLevel); } // Get the credentials or fall back to password String password = getPassword(record.get(0), adminPassword); String userName = getUserName(record.get(0)); // Adding the generic properties for all POST requests List<NameValuePair> nameValuePairs = new ArrayList<NameValuePair>(); if (!componentType.equals(RESOURCE)) nameValuePairs.add(new BasicNameValuePair("id", "nobot")); nameValuePairs.add(new BasicNameValuePair("_charset_", "UTF-8")); // Setting some specific fields depending on the content type if (componentType.equals(COMMENTS)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createComment")); nameValuePairs.add(new BasicNameValuePair("message", record.get(2))); } // Creates a forum post (or reply) if (componentType.equals(FORUM)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createForumPost")); nameValuePairs.add(new BasicNameValuePair("subject", record.get(2))); nameValuePairs.add(new BasicNameValuePair("message", record.get(3))); } // Follows a user (followedId) for the user posting the request if (componentType.equals(FOLLOW)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:follow")); nameValuePairs.add(new BasicNameValuePair("userId", "/social/authors/" + userName)); nameValuePairs.add(new BasicNameValuePair("followedId", "/social/authors/" + record.get(2))); } // Uploading Avatar picture if (componentType.equals(AVATAR)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:changeAvatar")); } // Joins a user (posting the request) to a Community Group (path) if (componentType.equals(JOIN)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:joinCommunityGroup")); int pos = url[0].indexOf("/configuration.social.json"); if (pos > 0) nameValuePairs.add(new BasicNameValuePair("path", url[0].substring(0, pos) + ".html")); else continue; // Invalid record } // Creates a new private message if (componentType.equals(MESSAGE)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createMessage")); nameValuePairs.add(new BasicNameValuePair("sendMail", "Sending...")); nameValuePairs.add(new BasicNameValuePair("content", record.get(4))); nameValuePairs.add(new BasicNameValuePair("subject", record.get(3))); nameValuePairs.add(new BasicNameValuePair("serviceSelector", "/bin/community")); nameValuePairs.add(new BasicNameValuePair("to", "/social/authors/" + record.get(2))); nameValuePairs.add(new BasicNameValuePair("userId", "/social/authors/" + record.get(2))); nameValuePairs.add(new BasicNameValuePair(":redirect", "//messaging.html")); nameValuePairs.add(new BasicNameValuePair(":formid", "generic_form")); nameValuePairs.add(new BasicNameValuePair(":formstart", "/content/sites/communities/messaging/compose/jcr:content/content/primary/start")); } // Creates a file or a folder if (componentType.equals(FILES)) { // Top level is always assumed to be a folder, second level files, and third and subsequent levels comments on files if (urlLevel == 0) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createFileLibraryFolder")); nameValuePairs.add(new BasicNameValuePair("name", record.get(2))); nameValuePairs.add(new BasicNameValuePair("message", record.get(3))); } else if (urlLevel == 1) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createComment")); } } // Creates a question, a reply or mark a reply as the best answer if (componentType.equals(QNA)) { if (urlLevel == 0) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createQnaPost")); nameValuePairs.add(new BasicNameValuePair("subject", record.get(2))); nameValuePairs.add(new BasicNameValuePair("message", record.get(3))); } else if (urlLevel == 1) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createQnaPost")); nameValuePairs.add(new BasicNameValuePair("message", record.get(3))); } else if (urlLevel == 2) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:selectAnswer")); } } // Creates an article or a comment if (componentType.equals(JOURNAL) || componentType.equals(BLOG)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createJournalComment")); nameValuePairs.add(new BasicNameValuePair("subject", record.get(2))); StringBuffer message = new StringBuffer("<p>" + record.get(3) + "</p>"); //We might have more paragraphs to add to the blog or journal article for (int i = 6; i < record.size(); i++) { if (record.get(i).length() > 0) { message.append("<p>" + record.get(i) + "</p>"); } } //We might have some tags to add to the blog or journal article if (record.get(5).length() > 0) { nameValuePairs.add(new BasicNameValuePair("tags", record.get(5))); } nameValuePairs.add(new BasicNameValuePair("message", message.toString())); } // Creates a review or a comment if (componentType.equals(REVIEWS)) { nameValuePairs.add(new BasicNameValuePair("message", record.get(2))); // This might be a top level review, or a comment on a review or another comment if (urlLevel == 0) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createReview")); nameValuePairs.add(new BasicNameValuePair("ratings", record.get(3))); if (record.size() > 4 && record.get(4).length() > 0) { // If we are dealing with a non-existent resource, then the design drives the behavior nameValuePairs.add(new BasicNameValuePair("scf:resourceType", "social/reviews/components/hbs/reviews")); nameValuePairs.add(new BasicNameValuePair("scf:included", record.get(4))); } } else { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createComment")); } } // Creates a rating if (componentType.equals(RATINGS)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:postTallyResponse")); nameValuePairs.add(new BasicNameValuePair("tallyType", "Rating")); nameValuePairs.add(new BasicNameValuePair("response", record.get(2))); } // Creates a DAM asset if (componentType.equals(ASSET) && record.get(ASSET_INDEX_NAME).length() > 0) { nameValuePairs.add(new BasicNameValuePair("fileName", record.get(ASSET_INDEX_NAME))); } // Creates an enablement resource if (componentType.equals(RESOURCE)) { nameValuePairs.add(new BasicNameValuePair(":operation", "se:createResource")); List<NameValuePair> otherNameValuePairs = buildNVP(record, RESOURCE_INDEX_PROPERTIES); nameValuePairs.addAll(otherNameValuePairs); // Adding the site nameValuePairs.add(new BasicNameValuePair("site", "/content/sites/" + record.get(RESOURCE_INDEX_SITE) + "/resources/en")); // Building the cover image fragment if (record.get(RESOURCE_INDEX_THUMBNAIL).length() > 0) { nameValuePairs.add(new BasicNameValuePair("cover-image", doThumbnail(hostname, port, adminPassword, csvfile, record.get(RESOURCE_INDEX_THUMBNAIL)))); } else { nameValuePairs.add(new BasicNameValuePair("cover-image", "")); } // Building the asset fragment String coverPath = "/content/dam/" + record.get(RESOURCE_INDEX_SITE) + "/resource-assets/" + record.get(2) + "/jcr:content/renditions/cq5dam.thumbnail.319.319.png"; String coverSource = "dam"; String assets = "[{\"cover-img-path\":\"" + coverPath + "\",\"thumbnail-source\":\"" + coverSource + "\",\"asset-category\":\"enablementAsset:dam\",\"resource-asset-name\":null,\"state\":\"A\",\"asset-path\":\"/content/dam/" + record.get(RESOURCE_INDEX_SITE) + "/resource-assets/" + record.get(2) + "\"}]"; nameValuePairs.add(new BasicNameValuePair("assets", assets)); logger.debug("assets:" + assets); } // Creates a learning path if (componentType.equals(LEARNING)) { nameValuePairs.add(new BasicNameValuePair(":operation", "se:editLearningPath")); List<NameValuePair> otherNameValuePairs = buildNVP(record, RESOURCE_INDEX_PROPERTIES); nameValuePairs.addAll(otherNameValuePairs); // Adding the site nameValuePairs.add(new BasicNameValuePair("site", "/content/sites/" + record.get(RESOURCE_INDEX_SITE) + "/resources/en")); // Building the cover image fragment if (record.get(RESOURCE_INDEX_THUMBNAIL).length() > 0) { nameValuePairs.add(new BasicNameValuePair("card-image", doThumbnail(hostname, port, adminPassword, csvfile, record.get(RESOURCE_INDEX_THUMBNAIL)))); } // Building the learning path fragment StringBuffer assets = new StringBuffer("[\""); if (learningpaths.get(record.get(2)) != null) { ArrayList<String> paths = learningpaths.get(record.get(2)); int i = 0; for (String path : paths) { assets.append("{\\\"type\\\":\\\"linked-resource\\\",\\\"path\\\":\\\""); assets.append(path); assets.append("\\\"}"); if (i++ < paths.size() - 1) { assets.append("\",\""); } } } else { logger.debug("No asset for this learning path"); } assets.append("\"]"); nameValuePairs.add(new BasicNameValuePair("learningpath-items", assets.toString())); logger.debug("Learning path:" + assets.toString()); } // Creates a calendar event if (componentType.equals(CALENDAR)) { nameValuePairs.add(new BasicNameValuePair(":operation", "social:createEvent")); try { JSONObject event = new JSONObject(); // Building the JSON fragment for a new calendar event event.accumulate("subject", record.get(2)); event.accumulate("message", record.get(3)); event.accumulate("location", record.get(4)); event.accumulate("tags", ""); event.accumulate("undefined", "update"); String startDate = record.get(5); startDate = startDate.replaceAll("YYYY", Integer.toString(Calendar.getInstance().get(Calendar.YEAR))); startDate = startDate.replaceAll("MM", Integer.toString(1 + Calendar.getInstance().get(Calendar.MONTH))); event.accumulate("start", startDate); String endDate = record.get(6); endDate = endDate.replaceAll("YYYY", Integer.toString(Calendar.getInstance().get(Calendar.YEAR))); endDate = endDate.replaceAll("MM", Integer.toString(1 + Calendar.getInstance().get(Calendar.MONTH))); event.accumulate("end", endDate); nameValuePairs.add(new BasicNameValuePair("event", event.toString())); } catch (Exception ex) { logger.error(ex.getMessage()); } } // Constructing a multi-part POST request MultipartEntityBuilder builder = MultipartEntityBuilder.create(); builder.setCharset(MIME.UTF8_CHARSET); builder.setMode(HttpMultipartMode.BROWSER_COMPATIBLE); for (NameValuePair nameValuePair : nameValuePairs) { builder.addTextBody(nameValuePair.getName(), nameValuePair.getValue(), ContentType.create("text/plain", MIME.UTF8_CHARSET)); } // See if we have attachments for this new post - or some other actions require a form nonetheless if ((componentType.equals(ASSET) || componentType.equals(AVATAR) || componentType.equals(FORUM) || (componentType.equals(JOURNAL)) || componentType.equals(BLOG)) && record.size() > 4 && record.get(ASSET_INDEX_NAME).length() > 0) { File attachment = new File(csvfile.substring(0, csvfile.indexOf(".csv")) + File.separator + record.get(ASSET_INDEX_NAME)); ContentType ct = ContentType.MULTIPART_FORM_DATA; if (record.get(ASSET_INDEX_NAME).indexOf(".mp4") > 0) { ct = ContentType.create("video/mp4", MIME.UTF8_CHARSET); } else if (record.get(ASSET_INDEX_NAME).indexOf(".jpg") > 0 || record.get(ASSET_INDEX_NAME).indexOf(".jpeg") > 0) { ct = ContentType.create("image/jpeg", MIME.UTF8_CHARSET); } else if (record.get(ASSET_INDEX_NAME).indexOf(".png") > 0) { ct = ContentType.create("image/png", MIME.UTF8_CHARSET); } else if (record.get(ASSET_INDEX_NAME).indexOf(".pdf") > 0) { ct = ContentType.create("application/pdf", MIME.UTF8_CHARSET); } else if (record.get(ASSET_INDEX_NAME).indexOf(".zip") > 0) { ct = ContentType.create("application/zip", MIME.UTF8_CHARSET); } builder.addBinaryBody("file", attachment, ct, attachment.getName()); logger.debug("Adding file to payload with name: " + attachment.getName() + " and type: " + ct.getMimeType()); } // If it's a resource or a learning path, we need the path to the resource for subsequent publishing String jsonElement = "location"; if (componentType.equals(RESOURCE)) { jsonElement = "changes/argument"; } if (componentType.equals(LEARNING)) { jsonElement = "path"; } if (componentType.equals(ASSET)) { jsonElement = null; } // This call generally returns the path to the content fragment that was just created location = Loader.doPost(hostname, port, url[urlLevel], userName, password, builder.build(), jsonElement); // If we are loading a DAM asset, we are waiting for all renditions to be generated before proceeding if (componentType.equals(ASSET)) { int pathIndex = url[urlLevel].lastIndexOf(".createasset.html"); if (pathIndex > 0) doWaitPath(hostname, port, adminPassword, url[urlLevel].substring(0, pathIndex) + "/" + record.get(ASSET_INDEX_NAME) + "/jcr:content/renditions", "nt:file"); } // Let's see if it needs to be added to a learning path if (componentType.equals(RESOURCE) && record.get(RESOURCE_INDEX_PATH).length() > 0 && location != null) { // Adding the location to a list of a resources for this particular Learning Path if (learningpaths.get(record.get(RESOURCE_INDEX_PATH)) == null) learningpaths.put(record.get(RESOURCE_INDEX_PATH), new ArrayList<String>()); logger.debug("Adding resource to Learning path: " + record.get(RESOURCE_INDEX_PATH)); ArrayList<String> locations = learningpaths.get(record.get(RESOURCE_INDEX_PATH)); locations.add(location); learningpaths.put(record.get(RESOURCE_INDEX_PATH), locations); } // If it's a Learning Path, we publish it when possible if (componentType.equals(LEARNING) && !port.equals(altport) && location != null) { // Publishing the learning path List<NameValuePair> publishNameValuePairs = new ArrayList<NameValuePair>(); publishNameValuePairs.add(new BasicNameValuePair(":operation", "se:publishEnablementContent")); publishNameValuePairs.add(new BasicNameValuePair("replication-action", "activate")); logger.debug("Publishing a learning path from: " + location); Loader.doPost(hostname, port, location, userName, password, new UrlEncodedFormEntity(publishNameValuePairs), null); // Waiting for the learning path to be published Loader.doWait(hostname, altport, "admin", adminPassword, location.substring(1 + location.lastIndexOf("/")) // Only search for groups with the learning path in it ); // Decorate the resources within the learning path with comments and ratings, randomly generated ArrayList<String> paths = learningpaths.get(record.get(2)); for (String path : paths) { doDecorate(hostname, altport, path, record, analytics); } } // If it's an Enablement Resource, a lot of things need to happen... // Step 1. If it's a SCORM resource, we wait for the SCORM metadata workflow to be complete before proceeding // Step 2. We publish the resource // Step 3. We set a new first published date on the resource (3 weeks earlier) so that reporting data is more meaningful // Step 4. We wait for the resource to be available on publish (checking that associated groups are available) // Step 5. We retrieve the json for the resource on publish to retrieve the Social endpoints // Step 6. We post ratings and comments for each of the enrollees on publish if (componentType.equals(RESOURCE) && !port.equals(altport) && location != null) { // Wait for the data to be fully copied doWaitPath(hostname, port, adminPassword, location + "/assets/asset", "nt:file"); // If we are dealing with a SCORM asset, we wait a little bit before publishing the resource to that the SCORM workflow is completed if (record.get(2).indexOf(".zip") > 0) { doSleep(10000, "SCORM Resource, waiting for workflow to complete"); } // Publishing the resource List<NameValuePair> publishNameValuePairs = new ArrayList<NameValuePair>(); publishNameValuePairs.add(new BasicNameValuePair(":operation", "se:publishEnablementContent")); publishNameValuePairs.add(new BasicNameValuePair("replication-action", "activate")); logger.debug("Publishing a resource from: " + location); Loader.doPost(hostname, port, location, userName, password, new UrlEncodedFormEntity(publishNameValuePairs), null); // Waiting for the resource to be published Loader.doWait(hostname, altport, "admin", adminPassword, location.substring(1 + location.lastIndexOf("/")) // Only search for groups with the resource path in it ); // Setting the first published timestamp so that reporting always comes with 3 weeks of data after building a new demo instance DateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss"); Calendar cal = Calendar.getInstance(); cal.add(Calendar.DATE, REPORTINGDAYS); List<NameValuePair> publishDateNameValuePairs = new ArrayList<NameValuePair>(); publishDateNameValuePairs .add(new BasicNameValuePair("date-first-published", dateFormat.format(cal.getTime()))); logger.debug("Setting the publish date for a resource from: " + location); doPost(hostname, port, location, userName, password, new UrlEncodedFormEntity(publishDateNameValuePairs), null); // Adding comments and ratings for this resource doDecorate(hostname, altport, location, record, analytics); } } } catch (IOException e) { logger.error(e.getMessage()); } }
From source file:Main.java
public static String fileReadOneLine(String fname) { BufferedReader br;// w ww. ja va2s . c om String line = null; try { br = new BufferedReader(new FileReader(fname), 512); try { line = br.readLine(); } finally { br.close(); } } catch (Exception e) { Log.e(TAG, "IO Exception when reading /sys/ file", e); } return line; }
From source file:view.visualization.TXTVisualization.java
public static LinkedList<String> atributi(String txt) { boolean kraj = false; LinkedList<String> atributi = new LinkedList<String>(); try {/*from w ww . jav a 2 s . c o m*/ BufferedReader in = new BufferedReader(new FileReader(txt)); int br = Integer.parseInt(in.readLine().split(" ")[1]); for (int j = 0; j < br + 1; j++) { String pom = in.readLine(); if (pom.contains("@attribute") && pom.contains("numeric")) { atributi.add(pom.substring(11, pom.lastIndexOf("n") - 1)); } } in.close(); } catch (Exception e) { e.getMessage(); } return atributi; }
From source file:Main.java
public static String readOneLine(String sFile) { BufferedReader brBuffer;/*w w w. jav a 2 s .com*/ String sLine = null; try { brBuffer = new BufferedReader(new FileReader(sFile), 512); try { sLine = brBuffer.readLine(); } finally { Log.w(TAG_READ, "file " + sFile + ": " + sLine); brBuffer.close(); } } catch (Exception e) { Log.e(TAG_READ, "IO Exception when reading /sys/ file", e); } return sLine; }
From source file:Main.java
public static String[] readTextFile(String filename) throws IOException { List<String> wordList = new ArrayList<String>(); BufferedReader reader = new BufferedReader(new FileReader(filename)); String line;/*from w w w . j a va 2 s .com*/ while ((line = reader.readLine()) != null) { wordList.add(line); } reader.close(); String[] words = new String[wordList.size()]; wordList.toArray(words); return words; }