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int LEFT
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From source file:jotp.java
public void init() { setBackground(Color.white);/*from w ww . j ava2s .co m*/ setLayout(new GridLayout(6, 1)); Panel panel1 = new Panel(); add(panel1); Font titlefont = new Font("TimesRoman", Font.BOLD, 14); panel1.setFont(titlefont); panel1.add(new Label(String.valueOf(version) + ": The Java OTP (aka S/Key) calculator!")); Panel panel2 = new Panel(); panel2.setLayout(new FlowLayout()); add(panel2); panel2.add(new Label("Challenge (e.g. \"55 latour1\"):")); chaltf = new TextField(24); panel2.add(chaltf); Panel panel3 = new Panel(); panel3.setLayout(new FlowLayout()); add(panel3); panel3.add(new Label("Secret Password:")); pwtf = new TextField(24); pwtf.setEchoCharacter('*'); panel3.add(pwtf); Panel panel4 = new Panel(); panel4.setLayout(new FlowLayout()); add(panel4); panel4.add(new Button(String.valueOf(md4label))); panel4.add(new Button(String.valueOf(md5label))); Panel panel6 = new Panel(); panel6.setLayout(new FlowLayout()); add(panel6); panel6.add(new Label("One-Time Password:", Label.LEFT)); otptf = new TextField(40); panel6.add(otptf); Panel panel7 = new Panel(); add(panel7); panel7.add(new Label("jotp by Harry Mantakos, " + "http://www.cs.umd.edu/~harry/jotp")); }
From source file:width.java
public void init() { Button button = new Button("Clear"); add(label);/*w ww . j av a 2s . c om*/ add(button); button.addActionListener(this); add(new Label("(My name is " + getParameter("name") + ".)", Label.LEFT)); }
From source file:mesquite.chromaseq.InterpretASNGenBank.InterpretASNGenBank.java
public boolean getExportOptions(boolean dataSelected, boolean taxaSelected) { MesquiteInteger buttonPressed = new MesquiteInteger(1); ExporterDialog exportDialog = new ExporterDialog(this, containerOfModule(), "Export ASN for GenBank Options", buttonPressed); exportDialog.appendToHelpString(//from w w w. j av a 2s.c o m "Choose the options for exporting the matrix as a ASN file prepared for submission NCBI's Sequin."); exportDialog.appendToHelpString( "<br><br><b>SeqID Suffix</b>: this will be added to each taxon name to form the unique SeqID."); exportDialog.appendToHelpString( "<br><b>Description of gene fragment</b>: this will be added to each sequence's DEFINITION."); exportDialog.appendToHelpString( "<br><b>Text before VoucherCode in DEFINITION</b>: this will inserted between the organism name and the VoucherCode in the DEFINITION."); SingleLineTextField uniqueSuffixField = exportDialog.addTextField("SeqID Suffix", "", 20); TextArea fsText = null; exportDialog.addLabel("Description of gene fragment:", Label.LEFT); fsText = exportDialog.addTextAreaSmallFont(addendum, 4); SingleLineTextField codeLabelField = exportDialog.addTextField("Text before VoucherCode in DEFINITION", "DNAVoucher", 20); Checkbox includeGapsCheckBox = exportDialog.addCheckBox("include gaps", includeGaps); exportDialog.addHorizontalLine(1); int releaseB = 1; if (releaseImmediately) releaseB = 0; RadioButtons releaseButtons = exportDialog .addRadioButtons(new String[] { "release immediately", "release date:" }, releaseB); IntegerField releaseYearField = exportDialog.addIntegerField("Release Year", releaseYear, 6); IntegerField releaseMonthField = exportDialog.addIntegerField("Release Month", releaseMonth, 4); IntegerField releaseDayField = exportDialog.addIntegerField("Release Day", releaseDay, 4); exportDialog.completeAndShowDialog(dataSelected, taxaSelected); addendum = fsText.getText(); codeLabel = codeLabelField.getText(); uniqueSuffix = uniqueSuffixField.getText(); boolean ok = (exportDialog.query(dataSelected, taxaSelected) == 0); if (ok) { includeGaps = includeGapsCheckBox.getState(); if (releaseButtons.getValue() == 0) { releaseImmediately = true; } else { releaseYear = releaseYearField.getValue(); releaseMonth = releaseMonthField.getValue(); releaseDay = releaseDayField.getValue(); releaseImmediately = false; } } exportDialog.dispose(); if (ok) ok = contact.queryValues(); if (ok) ok = authors.queryValues(); if (ok) ok = affiliation.queryValues(); if (ok) storePreferences(); return ok; }
From source file:SplineAnim.java
private void createControlPanel(Panel p) { GridBagLayout gl = new GridBagLayout(); GridBagConstraints gbc = new GridBagConstraints(); p.setLayout(gl);/*from w ww . ja v a 2 s . c o m*/ gbc.weightx = 100; gbc.weighty = 100; gbc.fill = GridBagConstraints.BOTH; gbc.gridx = 0; gbc.gridy = 0; gbc.gridwidth = 1; gbc.gridheight = 1; interpLabel = new Label("Interpolation Type", Label.LEFT); p.add(interpLabel, gbc); gbc.gridx = 1; gbc.gridy = 0; gbc.gridwidth = 1; gbc.gridheight = 1; interpChoice = new Choice(); interpChoice.add("Spline"); interpChoice.add("Linear"); p.add(interpChoice, gbc); interpChoice.addItemListener(this); gbc.gridx = 0; gbc.gridy = 2; gbc.gridwidth = 2; gbc.gridheight = 1; speedSlider = new Scrollbar(Scrollbar.HORIZONTAL, 2, 1, 0, 11); speedSlider.setUnitIncrement(1); p.add(speedSlider, gbc); speedSlider.addAdjustmentListener(this); gbc.gridx = 0; gbc.gridy = 3; gbc.gridwidth = 2; gbc.gridheight = 1; speedLabel = new Label(" - Animation Speed +", Label.CENTER); p.add(speedLabel, gbc); gbc.gridx = 0; gbc.gridy = 5; gbc.gridwidth = 2; gbc.gridheight = 1; animateButton = new Button("Stop Animation"); p.add(animateButton, gbc); animateButton.addActionListener(this); }
From source file:mesquite.zephyr.lib.RAxMLRunner.java
public boolean queryOptions() { if (!okToInteractWithUser(CAN_PROCEED_ANYWAY, "Querying Options")) //Debugg.println needs to check that options set well enough to proceed anyway return true; boolean closeWizard = false; if ((MesquiteTrunk.isMacOSXBeforeSnowLeopard()) && MesquiteDialog.currentWizard == null) { CommandRecord cRec = null;/*from ww w . j a v a 2 s . c o m*/ cRec = MesquiteThread.getCurrentCommandRecordDefIfNull(null); if (cRec != null) { cRec.requestEstablishWizard(true); closeWizard = true; } } MesquiteInteger buttonPressed = new MesquiteInteger(1); ExtensibleDialog dialog = new ExtensibleDialog(containerOfModule(), "RAxML Options & Locations", buttonPressed); //MesquiteTrunk.mesquiteTrunk.containerOfModule() // dialog.addLabel("RAxML - Options and Locations"); String helpString = "This module will prepare a matrix for RAxML, and ask RAxML do to an analysis. A command-line version of RAxML must be installed. " + "You can ask it to do multiple searches for optimal trees, OR to do a bootstrap analysis (but not both). " + "Mesquite will read in the trees found by RAxML, and, for non-bootstrap analyses, also read in the value of the RAxML score (-ln L) of the tree. " + "You can see the RAxML score by choosing Taxa&Trees>List of Trees, and then in the List of Trees for that trees block, choose " + "Columns>Number for Tree>Other Choices, and then in the Other Choices dialog, choose RAxML Score."; dialog.appendToHelpString(helpString); dialog.setHelpURL(zephyrRunnerEmployer.getProgramURL()); MesquiteTabbedPanel tabbedPanel = dialog.addMesquiteTabbedPanel(); tabbedPanel.addPanel("RAxML Program Details", true); externalProcRunner.addItemsToDialogPanel(dialog); addRunnerOptions(dialog); if (treeInferer != null) treeInferer.addItemsToDialogPanel(dialog); tabbedPanel.addPanel("Search Replicates & Bootstrap", true); doBootstrapCheckbox = dialog.addCheckBox("do bootstrap analysis", doBootstrap); dialog.addHorizontalLine(1); dialog.addLabel("Bootstrap Options", Label.LEFT, false, true); doBootstrapCheckbox.addItemListener(this); bootStrapRepsField = dialog.addIntegerField("Bootstrap Replicates", bootstrapreps, 8, 0, MesquiteInteger.infinite); seedField = dialog.addIntegerField("Random number seed: ", randomIntSeed, 20); dialog.addHorizontalLine(1); dialog.addLabel("Maximum Likelihood Tree Search Options", Label.LEFT, false, true); numRunsField = dialog.addIntegerField("Number of Search Replicates", numRuns, 8, 1, MesquiteInteger.infinite); onlyBestBox = dialog.addCheckBox("save only best tree", onlyBest); checkEnabled(doBootstrap); tabbedPanel.addPanel("Character Models & Constraints", true); dnaModelField = dialog.addTextField("DNA Model:", dnaModel, 20); proteinModelField = dialog.addTextField("Protein Model:", proteinModel, 20); dialog.addHorizontalLine(1); dialog.addLabel("Constraint tree:", Label.LEFT, false, true); constraintButtons = dialog.addRadioButtons( new String[] { "No Constraint", "Partial Resolution", "Skeletal Constraint" }, useConstraintTree); constraintButtons.addItemListener(this); /* dialog.addHorizontalLine(1); MPISetupField = dialog.addTextField("MPI setup command: ", MPIsetupCommand, 20); */ tabbedPanel.addPanel("Other options", true); otherOptionsField = dialog.addTextField("Other RAxML options:", otherOptions, 40); commandLabel = dialog.addLabel(""); commandField = dialog.addSingleLineTextArea("", 2); dialog.addBlankLine(); Button showCommand = dialog.addAListenedButton("Compose Command", null, this); showCommand.setActionCommand("composeRAxMLCommand"); Button clearCommand = dialog.addAListenedButton("Clear", null, this); clearCommand.setActionCommand("clearCommand"); tabbedPanel.cleanup(); dialog.nullifyAddPanel(); dialog.addHorizontalLine(1); // retainFilescheckBox = dialog.addCheckBox("Retain Files", retainFiles); dialog.completeAndShowDialog(true); if (buttonPressed.getValue() == 0) { boolean infererOK = (treeInferer == null || treeInferer.optionsChosen()); if (externalProcRunner.optionsChosen() && infererOK) { dnaModel = dnaModelField.getText(); proteinModel = proteinModelField.getText(); numRuns = numRunsField.getValue(); randomIntSeed = seedField.getValue(); bootstrapreps = bootStrapRepsField.getValue(); onlyBest = onlyBestBox.getState(); doBootstrap = doBootstrapCheckbox.getState(); useConstraintTree = constraintButtons.getValue(); otherOptions = otherOptionsField.getText(); processRunnerOptions(); storeRunnerPreferences(); } } dialog.dispose(); return (buttonPressed.getValue() == 0); }
From source file:mesquite.zephyr.lib.GarliRunner.java
public boolean queryOptions() { if (!okToInteractWithUser(CAN_PROCEED_ANYWAY, "Querying Options")) // Debugg.println needs to check that options set well enough to proceed anyway return true; boolean closeWizard = false; if ((MesquiteTrunk.isMacOSXBeforeSnowLeopard()) && MesquiteDialog.currentWizard == null) { CommandRecord cRec = null;/*from www. j a v a2 s .c om*/ cRec = MesquiteThread.getCurrentCommandRecordDefIfNull(null); if (cRec != null) { cRec.requestEstablishWizard(true); closeWizard = true; } } MesquiteInteger buttonPressed = new MesquiteInteger(1); ExtensibleDialog dialog = new ExtensibleDialog(containerOfModule(), "GARLI Options & Locations", buttonPressed); // dialog.addLabel("GARLI - Options and Locations"); String helpString = "This module will prepare a matrix for GARLI, and ask GARLI do to an analysis. A command-line version of GARLI must be installed. " + "You can ask it to do multiple searches for optimal trees, OR to do a bootstrap analysis (but not both). " + "Mesquite will read in the trees found by GARLI, and, for non-bootstrap analyses, also read in the value of the GARLI score (-ln L) of the tree. " + "You can see the GARLI score by choosing Taxa&Trees>List of Trees, and then in the List of Trees for that trees block, choose " + "Columns>Number for Tree>Other Choices, and then in the Other Choices dialog, choose GARLI Score."; dialog.appendToHelpString(helpString); dialog.setHelpURL(zephyrRunnerEmployer.getProgramURL()); MesquiteTabbedPanel tabbedPanel = dialog.addMesquiteTabbedPanel(); tabbedPanel.addPanel("GARLI Program Details", true); addRunnerOptions(dialog); dialog.addLabelSmallText( "This version of Zephyr tested on the following GARLI version(s): " + getTestedProgramVersions()); if (treeInferer != null) treeInferer.addItemsToDialogPanel(dialog); tabbedPanel.addPanel("Search Replicates & Bootstrap", true); doBootstrapCheckbox = dialog.addCheckBox("do bootstrap analysis", doBootstrap); dialog.addHorizontalLine(1); dialog.addLabel("Bootstrap Options", Label.LEFT, false, true); doBootstrapCheckbox.addItemListener(this); IntegerField bootStrapRepsField = dialog.addIntegerField("Bootstrap Reps", bootstrapreps, 8, 0, MesquiteInteger.infinite); dialog.addHorizontalLine(1); dialog.addLabel("Maximum Likelihood Tree Search Options", Label.LEFT, false, true); IntegerField numRunsField = dialog.addIntegerField("Number of Search Replicates", numRuns, 8, 1, MesquiteInteger.infinite); onlyBestBox = dialog.addCheckBox("save only best tree", onlyBest); dialog.addHorizontalLine(1); dialog.addLabel("Constraint tree:", Label.LEFT, false, true); constraintButtons = dialog.addRadioButtons( new String[] { "No Constraint", "Positive Constraint", "Negative Constraint" }, useConstraintTree); constraintButtons.addItemListener(this); tabbedPanel.addPanel("Character Models", true); if (!data.hasCharacterGroups()) { if (partitionScheme == partitionByCharacterGroups) partitionScheme = noPartition; } if (!(data instanceof DNAData && ((DNAData) data).someCoding())) { if (partitionScheme == partitionByCodonPosition) partitionScheme = noPartition; } if (data instanceof ProteinData) charPartitionButtons = dialog .addRadioButtons(new String[] { "don't partition", "use character groups" }, partitionScheme); else charPartitionButtons = dialog.addRadioButtons( new String[] { "don't partition", "use character groups", "use codon positions" }, partitionScheme); charPartitionButtons.addItemListener(this); if (!data.hasCharacterGroups()) { charPartitionButtons.setEnabled(1, false); } if (!(data instanceof DNAData && ((DNAData) data).someCoding())) { charPartitionButtons.setEnabled(2, false); } Checkbox linkModelsBox = dialog.addCheckBox("use same set of model parameters for all partition subsets", linkModels); Checkbox subsetSpecificRatesBox = dialog .addCheckBox("infer overall rate multipliers for each partition subset", subsetSpecificRates); dialog.addHorizontalLine(1); partitionChoice = dialog.addPopUpMenu("Edit model for this partition subset:", new String[] { "All Characters" }, 0); preparePartitionChoice(partitionChoice, partitionScheme); partitionChoice.addItemListener(this); if (data instanceof ProteinData) rateMatrixChoice = dialog.addPopUpMenu("Rate Matrix", new String[] { "poisson", "jones", "dayhoff", "wag", "mtmam", "mtrev" }, 2); else { rateMatrixChoice = dialog.addPopUpMenu("Rate Matrix", new String[] { "Equal Rates", "2-Parameter", "GTR ", "Custom" }, 2); //corresponding to 1rate, 2rate, 6rate, custom customMatrix = dialog.addTextField("6rate", 20); // since 2 is selected // as default in // previous customMatrix.setEditable(false); customMatrix.setBackground(ColorDistribution.veryLightGray); } rateMatrixChoice.addItemListener(this); invarSitesChoice = dialog.addPopUpMenu("Invariant Sites", new String[] { "none", "Estimate Proportion" }, 1); rateHetChoice = dialog.addPopUpMenu("Gamma Site-to-Site Rate Model", new String[] { "none", "Estimate Shape Parameter" }, 1); numRateCatField = dialog.addIntegerField("Number of Rate Categories for Gamma", numratecats, 4, 1, 20); tabbedPanel.addPanel("Other options", true); Checkbox showConfigDetailsBox = dialog.addCheckBox("show config file", showConfigDetails); tabbedPanel.cleanup(); dialog.nullifyAddPanel(); dialog.completeAndShowDialog(true); if (buttonPressed.getValue() == 0) { boolean infererOK = (treeInferer == null || treeInferer.optionsChosen()); if (externalProcRunner.optionsChosen() && infererOK) { numRuns = numRunsField.getValue(); bootstrapreps = bootStrapRepsField.getValue(); onlyBest = onlyBestBox.getState(); doBootstrap = doBootstrapCheckbox.getState(); showConfigDetails = showConfigDetailsBox.getState(); partitionScheme = charPartitionButtons.getValue(); useConstraintTree = constraintButtons.getValue(); linkModels = linkModelsBox.getState(); subsetSpecificRates = subsetSpecificRatesBox.getState(); processRunnerOptions(); // garliOptions = garliOptionsField.getText(); processCharacterModels(); storeRunnerPreferences(); } } dialog.dispose(); if (closeWizard) MesquiteDialog.closeWizard(); return (buttonPressed.getValue() == 0); }
From source file:CircleOfSquares.java
MemoryView(int methodAreaMemSectionSize) { setLayout(new GridLayout(memoryLocationsVisibleCount, 4)); setBackground(Color.lightGray); Font plainFont = new Font("TimesRoman", Font.PLAIN, 11); setFont(plainFont);/*from w w w . ja v a2 s . c o m*/ Font italicFont = new Font("TimesRoman", Font.ITALIC, 11); for (int i = 0; i < memoryLocationsVisibleCount; ++i) { pointer[i] = new Label("", Label.RIGHT); pointer[i].setFont(italicFont); add(pointer[i]); address[i] = new Label("", Label.CENTER); add(address[i]); byteValue[i] = new Label("", Label.CENTER); add(byteValue[i]); logicalValue[i] = new Label("", Label.LEFT); add(logicalValue[i]); } }
From source file:JVMSimulator.java
MemoryView(int methodAreaMemSectionSize) { int[] hComponentCellWidths = new int[4]; hComponentCellWidths[0] = 2;/* w w w .j av a 2 s . c o m*/ hComponentCellWidths[1] = 2; hComponentCellWidths[2] = 2; hComponentCellWidths[3] = 3; setLayout(new GridSnapLayout(memoryLocationsVisibleCount, 9, hComponentCellWidths)); setBackground(Color.lightGray); Font plainFont = new Font("TimesRoman", Font.PLAIN, 11); setFont(plainFont); Font italicFont = new Font("TimesRoman", Font.ITALIC, 11); for (int i = 0; i < memoryLocationsVisibleCount; ++i) { pointer[i] = new Label("", Label.RIGHT); pointer[i].setFont(italicFont); add(pointer[i]); address[i] = new Label("", Label.CENTER); add(address[i]); byteValue[i] = new Label("", Label.CENTER); add(byteValue[i]); logicalValue[i] = new Label("", Label.LEFT); add(logicalValue[i]); } }
From source file:JVMSimulator.java
MemoryViewTitlePanel() {
int[] hComponentCellWidths = new int[4];
hComponentCellWidths[0] = 2;/*from w ww.ja va 2 s. c om*/
hComponentCellWidths[1] = 2;
hComponentCellWidths[2] = 2;
hComponentCellWidths[3] = 3;
setLayout(new GridSnapLayout(1, 9, hComponentCellWidths));
setFont(new Font("Helvetica", Font.ITALIC, 11));
add(new Label("", Label.CENTER));
add(new Label(StringTable.address, Label.CENTER));
add(new Label(StringTable.bytecodes, Label.CENTER));
add(new Label(StringTable.mnemonics, Label.LEFT));
}