List of usage examples for com.vaadin.ui Window setHeight
@Override
public void setHeight(String height)
From source file:com.trivago.mail.pigeon.web.components.mail.ActionButtonColumnGenerator.java
License:Apache License
@Override public Object generateCell(final Table source, final Object itemId, final Object columnId) { HorizontalLayout hl = new HorizontalLayout(); Button showNlConentButton = new Button(); showNlConentButton.setDescription("View"); showNlConentButton.setImmediate(true); showNlConentButton.setIcon(new ThemeResource("../runo/icons/16/document-txt.png")); showNlConentButton.addListener(new Button.ClickListener() { @Override//from w ww . j a va2 s. c o m public void buttonClick(Button.ClickEvent event) { Mail m = new Mail((Long) itemId); Window nlConentView = new Window("Newsletter Contents of ID " + itemId); // Create an empty tab sheet. TabSheet tabsheet = new TabSheet(); Panel pText = new Panel("Text Content"); Panel pHtml = new Panel("Text Content"); RichTextArea textArea = new RichTextArea(); textArea.setValue(m.getText()); textArea.setReadOnly(true); RichTextArea richTextArea = new RichTextArea(); richTextArea.setValue(m.getHtml()); richTextArea.setReadOnly(true); pText.addComponent(textArea); pHtml.addComponent(richTextArea); richTextArea.setHeight("50%"); richTextArea.setWidth("100%"); textArea.setHeight("50%"); textArea.setWidth("100%"); nlConentView.setResizable(true); nlConentView.setWidth("800px"); nlConentView.setHeight("600px"); tabsheet.addTab(pText); tabsheet.getTab(pText).setCaption("Text Version"); tabsheet.addTab(pHtml); tabsheet.getTab(pHtml).setCaption("Html Version"); nlConentView.addComponent(tabsheet); source.getWindow().addWindow(nlConentView); nlConentView.setVisible(true); } }); final Button showOpenendMails = new Button(); showOpenendMails.setDescription("Show recipients of this mailling"); showOpenendMails.setIcon(new ThemeResource("../runo/icons/16/users.png")); showOpenendMails.addListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { Mail m = new Mail((Long) itemId); ModalRecipientListByMail modalRecipientListByMail = new ModalRecipientListByMail(m); source.getWindow().addWindow(modalRecipientListByMail); modalRecipientListByMail.setVisible(true); } }); hl.addComponent(showNlConentButton); hl.addComponent(showOpenendMails); return hl; }
From source file:de.akquinet.engineering.vaadin.vaangular.demo.VaangularUI.java
License:Apache License
private void showPopup(String eintrag) { Window modalWin = new Window("E-Mail is being sent..."); modalWin.setContent(new Label("<div style=\"margin: 10px; \">" + "<h2>Season's greetings</h2>" + "<p>" + eintrag + "</p>" + "</div>", ContentMode.HTML)); modalWin.setModal(true);/*w ww . jav a 2 s .c o m*/ modalWin.setWidth("400px"); modalWin.setHeight("250px"); modalWin.center(); UI.getCurrent().addWindow(modalWin); }
From source file:de.catma.ui.dialog.wizard.WizardFactory.java
License:Open Source License
public Window createWizardWindow(String caption, String width, String height) { Wizard wizard = new Wizard(); wizard.getFinishButton().setEnabled(false); Window wizardWindow = new Window(caption); wizardWindow.setModal(true);/*from www.j av a 2 s .co m*/ wizardWindow.setContent(wizard); wizardWindow.setWidth(width); wizardWindow.setHeight(height); wizard.addListener(new WizardManager(wizardWindow)); wizard.addListener(wizardProgressListener); addSteps(wizard); return wizardWindow; }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.BiologicalSamplesComponent.java
License:Open Source License
/** * /*from w w w. j a v a2 s . c o m*/ * @param id */ public void updateUI(String id) { currentID = id; sampleBioGrid = new Grid(); sampleEntityGrid = new Grid(); sampleEntityGrid.addSelectionListener(new SelectionListener() { @Override public void select(SelectionEvent event) { BeanItem<BiologicalEntitySampleBean> selectedBean = samplesEntity .getItem(sampleEntityGrid.getSelectedRow()); if (selectedBean == null) { TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity") .getComponent(); filterField.setValue(""); } else { TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity") .getComponent(); filterField.setValue(selectedBean.getBean().getCode()); // samplesBio.addContainerFilter("biologicalEntity", // selectedBean.getBean().getSecondaryName(), false, false); } } }); if (id == null) return; BeanItemContainer<BiologicalSampleBean> samplesBioContainer = new BeanItemContainer<BiologicalSampleBean>( BiologicalSampleBean.class); BeanItemContainer<BiologicalEntitySampleBean> samplesEntityContainer = new BeanItemContainer<BiologicalEntitySampleBean>( BiologicalEntitySampleBean.class); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(id); List<VocabularyTerm> terms = null; Map<String, String> termsMap = new HashMap<String, String>(); for (Sample sample : allSamples) { if (sample.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_ENTITY.toString())) { Map<String, String> sampleProperties = sample.getProperties(); BiologicalEntitySampleBean newEntityBean = new BiologicalEntitySampleBean(); newEntityBean.setCode(sample.getCode()); newEntityBean.setId(sample.getIdentifier()); newEntityBean.setType(sample.getSampleTypeCode()); newEntityBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newEntityBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newEntityBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); String organismID = sampleProperties.get("Q_NCBI_ORGANISM"); newEntityBean.setOrganism(organismID); if (terms != null) { if (termsMap.containsKey(organismID)) { newEntityBean.setOrganismName(termsMap.get(organismID)); } else { for (VocabularyTerm term : terms) { if (term.getCode().equals(organismID)) { newEntityBean.setOrganismName(term.getLabel()); break; } } } } else { for (Vocabulary vocab : datahandler.getOpenBisClient().getFacade().listVocabularies()) { if (vocab.getCode().equals("Q_NCBI_TAXONOMY")) { terms = vocab.getTerms(); for (VocabularyTerm term : vocab.getTerms()) { if (term.getCode().equals(organismID)) { newEntityBean.setOrganismName(term.getLabel()); termsMap.put(organismID, term.getLabel()); break; } } break; } } } newEntityBean.setProperties(sampleProperties); newEntityBean.setGender(sampleProperties.get("Q_GENDER")); samplesEntityContainer.addBean(newEntityBean); // for (Sample child : datahandler.getOpenBisClient().getChildrenSamples(sample)) { for (Sample realChild : sample.getChildren()) { if (realChild.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_SAMPLE.toString())) { // Sample realChild = // datahandler.getOpenBisClient().getSampleByIdentifier(child.getIdentifier()); Map<String, String> sampleBioProperties = realChild.getProperties(); BiologicalSampleBean newBean = new BiologicalSampleBean(); newBean.setCode(realChild.getCode()); newBean.setId(realChild.getIdentifier()); newBean.setType(realChild.getSampleTypeCode()); newBean.setPrimaryTissue(sampleBioProperties.get("Q_PRIMARY_TISSUE")); newBean.setTissueDetailed(sampleBioProperties.get("Q_TISSUE_DETAILED")); newBean.setBiologicalEntity(sample.getCode()); newBean.setAdditionalInfo(sampleBioProperties.get("Q_ADDITIONAL_INFO")); newBean.setExternalDB(sampleBioProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleBioProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleBioProperties); samplesBioContainer.addBean(newBean); } } } } numberOfBioSamples = samplesBioContainer.size(); numberOfEntitySamples = samplesEntityContainer.size(); samplesBio = samplesBioContainer; samplesEntity = samplesEntityContainer; sampleEntityGrid.removeAllColumns(); final GeneratedPropertyContainer gpcEntity = new GeneratedPropertyContainer(samplesEntity); gpcEntity.removeContainerProperty("id"); gpcEntity.removeContainerProperty("type"); gpcEntity.removeContainerProperty("organismName"); gpcEntity.removeContainerProperty("organism"); sampleEntityGrid.setContainerDataSource(gpcEntity); sampleEntityGrid.setColumnReorderingAllowed(true); gpcEntity.addGeneratedProperty("Organism", new PropertyValueGenerator<String>() { @Override public Class<String> getType() { return String.class; } @Override public String getValue(Item item, Object itemId, Object propertyId) { String ncbi = String.format( "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&name=%s&lvl=0&srchmode=1&keep=1&unlock' target='_blank'>%s</a>", item.getItemProperty("organism").getValue(), item.getItemProperty("organismName").getValue()); String link = String.format("<a href='%s", ncbi); return link; } }); sampleEntityGrid.getColumn("Organism").setRenderer(new HtmlRenderer()); final GeneratedPropertyContainer gpcBio = new GeneratedPropertyContainer(samplesBio); gpcBio.removeContainerProperty("id"); gpcBio.removeContainerProperty("type"); sampleBioGrid.setContainerDataSource(gpcBio); sampleBioGrid.setColumnReorderingAllowed(true); sampleBioGrid.setColumnOrder("secondaryName", "code"); gpcEntity.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); gpcBio.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); sampleEntityGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId()); BiologicalEntitySampleBean selectedExp = (BiologicalEntitySampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleEntityGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId()); BiologicalEntitySampleBean selectedSample = (BiologicalEntitySampleBean) selected.getBean(); Window subWindow = new Window("Edit Metadata"); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(currentID); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } })); sampleEntityGrid.getColumn("edit").setWidth(70); sampleEntityGrid.getColumn("edit").setHeaderCaption(""); sampleEntityGrid.setColumnOrder("edit", "secondaryName", "Organism", "properties", "code", "additionalInfo", "gender", "externalDB"); sampleBioGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId()); BiologicalSampleBean selectedExp = (BiologicalSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleBioGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId()); try { BiologicalSampleBean selectedSample = (BiologicalSampleBean) selected.getBean(); Window subWindow = new Window(); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setResizable(false); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(currentID); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } catch (NullPointerException e) { System.err.println("NullPointerException while trying to set metadata: " + e.getMessage()); } } })); sampleBioGrid.getColumn("edit").setWidth(70); sampleBioGrid.getColumn("edit").setHeaderCaption(""); sampleBioGrid.setColumnOrder("edit", "secondaryName", "primaryTissue", "properties", "tissueDetailed", "code", "additionalInfo", "biologicalEntity", "externalDB"); sampleBioGrid.getColumn("biologicalEntity").setHeaderCaption("Source"); helpers.GridFunctions.addColumnFilters(sampleBioGrid, gpcBio); helpers.GridFunctions.addColumnFilters(sampleEntityGrid, gpcEntity); if (fileDownloaderSources != null) exportSources.removeExtension(fileDownloaderSources); StreamResource srSource = Utils.getTSVStream(Utils.containerToString(samplesEntityContainer), String.format("%s_%s_", id.substring(1).replace("/", "_"), "sample_sources")); fileDownloaderSources = new FileDownloader(srSource); fileDownloaderSources.extend(exportSources); if (fileDownloaderSamples != null) exportSamples.removeExtension(fileDownloaderSamples); StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samplesBioContainer), String.format("%s_%s_", id.substring(1).replace("/", "_"), "extracted_samples")); fileDownloaderSamples = new FileDownloader(srSamples); fileDownloaderSamples.extend(exportSamples); this.buildLayout(); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view./*w w w .j ava2 s . c o m*/ */ private void buildLayout() { this.vert.removeAllComponents(); this.vert.setSizeFull(); vert.setResponsive(true); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); tableSection.setResponsive(true); tableSectionContent.setResponsive(true); // tableSectionContent.setCaption("Datasets"); // tableSectionContent.setIcon(FontAwesome.FLASK); // tableSection.addComponent(new Label(String.format("This project contains %s dataset(s).", // numberOfDatasets))); tableSectionContent.setMargin(new MarginInfo(true, false, true, false)); tableSection.addComponent(headerLabel); tableSectionContent.addComponent(this.table); vert.setMargin(new MarginInfo(false, true, false, false)); tableSection.setMargin(new MarginInfo(true, false, false, true)); // tableSectionContent.setMargin(true); // tableSection.setMargin(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(tableSection); table.setSizeFull(); tableSection.setSizeFull(); tableSectionContent.setSizeFull(); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, true, true)); buttonLayout.setHeight(null); // buttonLayout.setWidth("100%"); buttonLayout.setSpacing(true); buttonLayout.setResponsive(true); // final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>" + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>" + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>" + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>" + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>" + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-party freeware. </p>" + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>" + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> " + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>"; export.setIcon(FontAwesome.DOWNLOAD); PopupView tooltip = new PopupView(new helpers.ToolTip(content)); tooltip.setHeight("44px"); HorizontalLayout help = new HorizontalLayout(); help.setSizeFull(); HorizontalLayout helpContent = new HorizontalLayout(); // helpContent.setSizeFull(); help.setMargin(new MarginInfo(false, false, false, true)); Label helpText = new Label("Attention: Click here before Download!"); helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML)); helpContent.addComponent(helpText); helpContent.addComponent(tooltip); helpContent.setSpacing(true); help.addComponent(helpContent); help.setComponentAlignment(helpContent, Alignment.TOP_CENTER); buttonLayout.addComponent(export); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); // buttonLayout.addComponent(visualize); buttonLayout.addComponent(this.download); /** * prepare download. */ download.setEnabled(false); download.setResource(new ExternalResource("javascript:")); // visualize.setEnabled(false); for (final Object itemId : this.table.getItemIds()) { setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue()); } this.table.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick() & !((boolean) table.getItem(event.getItemId()).getItemProperty("isDirectory").getValue())) { String datasetCode = (String) table.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) table.getItem(event.getItemId()).getItemProperty("File Name") .getValue(); URL url; try { Resource res = null; Object parent = table.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) table.getItem(parent) .getItemProperty("File Name").getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.setSizeFull(); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".png")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); // streamres.setMIMEType("application/png"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/xml"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".alleles")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".tsv")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".GSvar")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".log")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; visualize = true; } if (visualize) { // LOGGER.debug("Is resource null?: " + String.valueOf(res == null)); BrowserFrame frame = new BrowserFrame("", res); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setHeight("75%"); subWindow.setWidth("75%"); subWindow.setResizable(false); frame.setSizeFull(); frame.setHeight("100%"); // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } } }); this.vert.addComponent(buttonLayout); this.vert.addComponent(help); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.ExperimentComponent.java
License:Open Source License
public void updateUI(ProjectBean currentBean) { projectBean = currentBean;//from w w w .j a v a2 s .c o m experiments.removeAllColumns(); // experiments.setContainerDataSource(projectBean.getExperiments()); // BeanItemContainer<ExperimentBean> experimentBeans = // loadMoreExperimentInformation(projectBean.getExperiments()); // GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(experimentBeans); GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(projectBean.getExperiments()); gpc.removeContainerProperty("containsData"); gpc.removeContainerProperty("controlledVocabularies"); gpc.removeContainerProperty("id"); gpc.removeContainerProperty("lastChangedDataset"); gpc.removeContainerProperty("lastChangedSample"); gpc.removeContainerProperty("properties"); gpc.removeContainerProperty("type"); gpc.removeContainerProperty("samples"); gpc.removeContainerProperty("status"); gpc.removeContainerProperty("typeLabels"); gpc.removeContainerProperty("registrationDate"); experiments.addItemClickListener(new ItemClickListener() { /** * */ private static final long serialVersionUID = -43367719647620455L; @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(event.getItemId()); ExperimentBean selectedExp = (ExperimentBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("experiment"); state.notifyObservers(message); } }); gpc.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { /** * */ private static final long serialVersionUID = 7558511163500976236L; @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); gpc.addGeneratedProperty("registrationDate", new PropertyValueGenerator<String>() { @Override public Class<String> getType() { return String.class; } @Override public String getValue(Item item, Object itemId, Object propertyId) { BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(itemId); ExperimentBean expBean = (ExperimentBean) selected.getBean(); Date date = expBean.getRegistrationDate(); SimpleDateFormat sd = new SimpleDateFormat("yyyy-MM-dd hh:mm a"); String dateString = sd.format(date); return dateString; } }); experiments.setContainerDataSource(gpc); experiments.getColumn("prettyType").setHeaderCaption("Type"); experiments.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) projectBean.getExperiments().getItem(event.getItemId()); ExperimentBean selectedSample = (ExperimentBean) selected.getBean(); Window subWindow = new Window("Edit Metadata"); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.setResizable(false); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } })); experiments.getColumn("edit").setWidth(70); experiments.setColumnOrder("edit", "prettyType"); experiments.getColumn("edit").setHeaderCaption(""); // experiments.setHeightMode(HeightMode.ROW); // experiments.setHeightByRows(gpc.size()); if (fileDownloader != null) this.export.removeExtension(fileDownloader); StreamResource sr = Utils.getTSVStream(Utils.containerToString(projectBean.getExperiments()), String.format("%s_%s_", projectBean.getId().substring(1).replace("/", "_"), "experimental_steps")); fileDownloader = new FileDownloader(sr); fileDownloader.extend(export); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java
License:Open Source License
public void updateUI(String type, String id, String filterFor) { sampleGrid = new Grid(); typeString = type;/*from w w w . j a va2 s . c o m*/ idString = id; filterString = filterFor; if (id == null) return; try { HierarchicalContainer datasetContainer = new HierarchicalContainer(); datasetContainer.addContainerProperty("Select", CheckBox.class, null); datasetContainer.addContainerProperty("Project", String.class, null); datasetContainer.addContainerProperty("Sample", String.class, null); datasetContainer.addContainerProperty("Description", String.class, null); // datasetContainer.addContainerProperty("Sample Type", String.class, null); datasetContainer.addContainerProperty("File Name", String.class, null); datasetContainer.addContainerProperty("File Type", String.class, null); datasetContainer.addContainerProperty("Dataset Type", String.class, null); datasetContainer.addContainerProperty("Registration Date", String.class, null); datasetContainer.addContainerProperty("Validated", Boolean.class, null); datasetContainer.addContainerProperty("File Size", String.class, null); datasetContainer.addContainerProperty("file_size_bytes", Long.class, null); datasetContainer.addContainerProperty("dl_link", String.class, null); datasetContainer.addContainerProperty("isDirectory", Boolean.class, null); datasetContainer.addContainerProperty("CODE", String.class, null); List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasetsAll = null; List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); Map<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>> datasetFilter = new HashMap<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>>(); // clear download queue for new view PortletSession portletSession = ((QbicmainportletUI) UI.getCurrent()).getPortletSession(); portletSession.setAttribute("qbic_download", new HashMap<String, AbstractMap.SimpleEntry<String, Long>>(), PortletSession.APPLICATION_SCOPE); Map<String, Sample> checkedTestSamples = new HashMap<String, Sample>(); switch (type) { case "project": String projectIdentifier = id; retrievedDatasetsAll = datahandler.getOpenBisClient() .getDataSetsOfProjectByIdentifierWithSearchCriteria(projectIdentifier); for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : retrievedDatasetsAll) { ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> values = datasetFilter .get(ds.getSampleIdentifierOrNull()); if (values == null) { values = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); datasetFilter.put(ds.getSampleIdentifierOrNull(), values); } values.add(ds); } if (filterFor.equals("measured")) { BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>( TestSampleBean.class); // List<Sample> allSamples = // datahandler.getOpenBisClient() // .getSamplesOfProjectBySearchService(projectIdentifier); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(id); for (Sample sample : allSamples) { checkedTestSamples.put(sample.getCode(), sample); if (sample.getSampleTypeCode().equals("Q_TEST_SAMPLE")) { // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(), // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null, // null)); Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(sample.getSampleTypeCode()); newBean.setSampleType(sampleProperties.get("Q_SAMPLE_TYPE")); newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } for (Sample child : sample.getChildren()) { foundDataset = datasetFilter.get(child.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } } } else if (sample.getSampleTypeCode().equals("Q_MHC_LIGAND_EXTRACT")) { // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(), // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null, // null)); Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(sample.getSampleTypeCode()); newBean.setSampleType(sampleProperties.get("Q_MHC_CLASS")); newBean.setAdditionalInfo(sampleProperties.get("Q_ANTIBODY")); newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } for (Sample child : sample.getChildren()) { foundDataset = datasetFilter.get(child.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } } } } numberOfSamples = samplesContainer.size(); samples = samplesContainer; final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples); gpc.removeContainerProperty("id"); gpc.removeContainerProperty("type"); sampleGrid.setContainerDataSource(gpc); sampleGrid.setColumnReorderingAllowed(true); gpc.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); sampleGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedExp = (TestSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedSample = (TestSampleBean) selected.getBean(); Window subWindow = new Window("Edit Metadata"); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.setResizable(false); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(typeString, idString, filterString); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } })); sampleGrid.getColumn("edit").setHeaderCaption(""); sampleGrid.getColumn("edit").setWidth(70); sampleGrid.setColumnOrder("edit", "secondaryName", "sampleType", "code", "properties", "additionalInfo", "externalDB"); helpers.GridFunctions.addColumnFilters(sampleGrid, gpc); numberOfSamples = samplesContainer.size(); sampleGrid.setCaption("Measured Samples"); this.datasetTable.setCaption("Raw Data"); numberOfDatasets = retrievedDatasets.size(); this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10))); // sampleGrid.setHeightMode(HeightMode.ROW); // sampleGrid.setHeightByRows(numberOfSamples); } else if (filterFor.equals("results")) { BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>( TestSampleBean.class); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(projectIdentifier); for (Sample sample : allSamples) { checkedTestSamples.put(sample.getCode(), sample); if (!sample.getSampleTypeCode().equals("Q_TEST_SAMPLE") && !sample.getSampleTypeCode().equals("Q_MICROARRAY_RUN") && !sample.getSampleTypeCode().equals("Q_MS_RUN") && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_SAMPLE") && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_ENTITY") && !sample.getSampleTypeCode().equals("Q_NGS_SINGLE_SAMPLE_RUN")) { Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(prettyNameMapper.getPrettyName(sample.getSampleTypeCode())); newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : foundDataset) { // we don't want to show project data or log files in the results tab if (ds.getDataSetTypeCode().equals("Q_PROJECT_DATA")) { if (ds.getProperties().get("Q_ATTACHMENT_TYPE").equals("INFORMATION")) { continue; } else { retrievedDatasets.add(ds); } } else if (ds.getDataSetTypeCode().contains("LOGS")) { continue; } else { retrievedDatasets.add(ds); } } // retrievedDatasets.addAll(foundDataset); } } } // numberOfSamples = samplesContainer.size(); samples = samplesContainer; final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples); gpc.removeContainerProperty("id"); gpc.removeContainerProperty("sampleType"); sampleGrid.setContainerDataSource(gpc); sampleGrid.setColumnReorderingAllowed(true); sampleGrid.setColumnOrder("secondaryName", "type", "code", "properties"); numberOfSamples = samplesContainer.size(); // sampleGrid.setHeightMode(HeightMode.ROW); // sampleGrid.setHeightByRows(numberOfSamples); sampleGrid.setCaption("Workflow Runs"); helpers.GridFunctions.addColumnFilters(sampleGrid, gpc); this.datasetTable.setCaption("Result Files"); datasetTable.setColumnHeader("Sample", "Workflow Run"); sampleGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedExp = (TestSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); numberOfDatasets = retrievedDatasets.size(); this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10))); } break; case "experiment": String experimentIdentifier = id; retrievedDatasets = datahandler.getOpenBisClient() .getDataSetsOfExperimentByCodeWithSearchCriteria(experimentIdentifier); break; case "sample": String sampleIdentifier = id; String sampleCode = sampleIdentifier.split("/")[2]; retrievedDatasets = datahandler.getOpenBisClient().getDataSetsOfSample(sampleCode); break; default: retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); break; } BeanItemContainer<DatasetBean> forExport = new BeanItemContainer(DatasetBean.class); numberOfDatasets = retrievedDatasets.size(); if (numberOfDatasets == 0 & filterFor.equals("measured")) { descriptionLabel = new Label(String.format( "This project contains %s measured samples for which %s raw data dataset(s) have been registered.", numberOfSamples, 0), ContentMode.HTML); helpers.Utils.Notification("No raw data available.", "No raw data is available for this project. Please contact the project manager if this is not expected.", "warning"); } else if (numberOfDatasets == 0 & filterFor.equals("results")) { descriptionLabel = new Label(String.format("This project contains %s result datasets.", 0), ContentMode.HTML); helpers.Utils.Notification("No results available.", "No result data is available for this project. Please contact the project manager if this is not expected.", "warning"); } else { Map<String, String> samples = new HashMap<String, String>(); // project same for all datasets String projectCode = retrievedDatasets.get(0).getExperimentIdentifier().split("/")[2]; for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet dataset : retrievedDatasets) { samples.put(dataset.getCode(), dataset.getSampleIdentifierOrNull().split("/")[2]); } List<DatasetBean> dsBeans = datahandler.queryDatasetsForFolderStructure(retrievedDatasets); for (DatasetBean d : dsBeans) { Date date = d.getRegistrationDate(); SimpleDateFormat sd = new SimpleDateFormat("yyyy-MM-dd hh:mm a"); String dateString = sd.format(date); // Timestamp ts = Timestamp.valueOf(dateString); String sampleID = samples.get(d.getCode()); forExport.addBean(d); Sample dsSample = checkedTestSamples.get(sampleID); String secNameDS = d.getProperties().get("Q_SECONDARY_NAME"); String secName = datahandler.getSecondaryName(dsSample, secNameDS); registerDatasetInTable(d, datasetContainer, projectCode, sampleID, dateString, null, secName); } if (filterFor.equals("measured")) { descriptionLabel = new Label(String.format( "This project contains %s measured samples for which %s raw data dataset(s) have been registered.", numberOfSamples, dsBeans.size()), ContentMode.HTML); } else if (filterFor.equals("results")) { descriptionLabel = new Label( String.format("This project contains %s result datasets.", dsBeans.size()), ContentMode.HTML); } } this.setContainerDataSource(datasetContainer); if (fileDownloaderData != null) this.exportData.removeExtension(fileDownloaderData); StreamResource srData = Utils.getTSVStream(Utils.containerToString(forExport), String.format("%s_%s_", id.substring(1).replace("/", "_"), datasetTable.getCaption().replace(" ", "_"))); fileDownloaderData = new FileDownloader(srData); fileDownloaderData.extend(exportData); if (fileDownloaderSamples != null) this.exportSamples.removeExtension(fileDownloaderSamples); StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samples), String.format("%s_%s_", id.substring(1).replace("/", "_"), sampleGrid.getCaption().replaceAll(" ", "_"))); fileDownloaderSamples = new FileDownloader(srSamples); fileDownloaderSamples.extend(exportSamples); } catch (Exception e) { e.printStackTrace(); LOGGER.error(String.format("getting dataset failed for dataset %s %s", type, id), e.getStackTrace()); } }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view./* w w w . j a v a 2s .com*/ */ private void buildLayout() { this.vert.removeAllComponents(); this.vert.setWidth("100%"); // Table (containing datasets) section VerticalLayout tableSectionDatasets = new VerticalLayout(); VerticalLayout tableSectionSamples = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); HorizontalLayout sampletableSectionContent = new HorizontalLayout(); tableSectionContent.setMargin(new MarginInfo(false, false, false, false)); sampletableSectionContent.setMargin(new MarginInfo(false, false, false, false)); // tableSectionContent.setCaption("Datasets"); // tableSectionContent.setIcon(FontAwesome.FLASK); descriptionLabel.setWidth("100%"); tableSectionDatasets.addComponent(descriptionLabel); sampletableSectionContent.addComponent(sampleGrid); tableSectionContent.addComponent(this.datasetTable); tableSectionDatasets.setMargin(new MarginInfo(true, false, false, true)); tableSectionDatasets.setSpacing(true); tableSectionSamples.setMargin(new MarginInfo(true, false, true, true)); tableSectionSamples.setSpacing(true); tableSectionDatasets.addComponent(tableSectionContent); tableSectionSamples.addComponent(sampletableSectionContent); tableSectionSamples.addComponent(exportSamples); this.vert.addComponent(tableSectionDatasets); sampleGrid.setWidth("100%"); datasetTable.setWidth("100%"); tableSectionDatasets.setWidth("100%"); tableSectionSamples.setWidth("100%"); sampletableSectionContent.setWidth("100%"); tableSectionContent.setWidth("100%"); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, false, true)); buttonLayout.setHeight(null); buttonLayout.setSpacing(true); this.download.setEnabled(false); buttonLayout.setSpacing(true); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); buttonLayout.addComponent(exportData); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); // buttonLayout.addComponent(visualize); buttonLayout.addComponent(this.download); String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>" + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>" + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>" + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>" + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>" + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-part freeware. </p>" + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>" + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> " + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>"; PopupView tooltip = new PopupView(new helpers.ToolTip(content)); tooltip.setHeight("44px"); HorizontalLayout help = new HorizontalLayout(); help.setSizeFull(); HorizontalLayout helpContent = new HorizontalLayout(); // helpContent.setSizeFull(); help.setMargin(new MarginInfo(false, false, false, true)); Label helpText = new Label("Attention: Click here before Download!"); helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML)); helpContent.addComponent(helpText); helpContent.addComponent(tooltip); helpContent.setSpacing(true); help.addComponent(helpContent); help.setComponentAlignment(helpContent, Alignment.TOP_CENTER); /** * prepare download. */ download.setResource(new ExternalResource("javascript:")); download.setEnabled(false); for (final Object itemId : this.datasetTable.getItemIds()) { setCheckedBox(itemId, (String) this.datasetTable.getItem(itemId).getItemProperty("CODE").getValue()); } this.datasetTable.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick() & !((boolean) datasetTable.getItem(event.getItemId()) .getItemProperty("isDirectory").getValue())) { String datasetCode = (String) datasetTable.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) datasetTable.getItem(event.getItemId()) .getItemProperty("File Name").getValue(); URL url = null; try { Resource res = null; Object parent = datasetTable.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) datasetTable.getItem(parent) .getItemProperty("File Name").getValue(); try { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + URLEncoder.encode(datasetFileName, "UTF-8")); } catch (UnsupportedEncodingException e) { // TODO Auto-generated catch block e.printStackTrace(); } } else { try { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, URLEncoder.encode(datasetFileName, "UTF-8")); } catch (UnsupportedEncodingException e) { // TODO Auto-generated catch block e.printStackTrace(); } } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.setSizeFull(); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".png")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/png"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/xml"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".alleles")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".tsv")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".log")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".GSvar")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (visualize) { BrowserFrame frame = new BrowserFrame("", res); frame.setSizeFull(); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setHeight("75%"); subWindow.setWidth("75%"); subWindow.setResizable(false); frame.setSizeFull(); frame.setHeight("100%"); // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); helpers.Utils.Notification("No file attached.", "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", "error"); // Notification // .show( // "Given dataset has no file attached to it!! Please Contact your project manager. Or // check whether it already has some data", // Notification.Type.ERROR_MESSAGE); } } } }); this.vert.addComponent(help); this.vert.addComponent(buttonLayout); this.vert.addComponent(tableSectionSamples); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjInformationComponent.java
License:Open Source License
private void initUI() { vert = new VerticalLayout(); descHorz = new HorizontalLayout(); // horz = new HorizontalLayout(); statusPanel = new Panel(); descriptionPanel = new Panel(); datasetTable = buildFilterTable();/*from w w w .java2 s. c om*/ peopleInCharge = new Accordion(); setResponsive(true); vert.setResponsive(true); descHorz.setResponsive(true); statusPanel.setResponsive(true); descriptionPanel.setResponsive(true); vert.setMargin(new MarginInfo(true, true, false, false)); setSizeFull(); vert.setSizeFull(); descHorz.setSizeFull(); statusPanel.setSizeFull(); descriptionPanel.setSizeFull(); investigator = new Label("", ContentMode.HTML); contactPerson = new Label("", ContentMode.HTML); projectManager = new Label("", ContentMode.HTML); final VerticalLayout layoutI = new VerticalLayout(investigator); final VerticalLayout layoutC = new VerticalLayout(contactPerson); final VerticalLayout layoutP = new VerticalLayout(projectManager); layoutI.setMargin(true); layoutC.setMargin(true); layoutP.setMargin(true); peopleInCharge.addTab(layoutI, "Investigator"); peopleInCharge.addTab(layoutC, "Contact Person"); peopleInCharge.addTab(layoutP, "Project Manager"); descEdit = new Button("Edit"); descEdit.setIcon(FontAwesome.PENCIL); descEdit.setStyleName(ValoTheme.BUTTON_BORDERLESS_COLORED); descEdit.setResponsive(true); descEdit.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { changeMetadata.updateUI(projectBean); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); Window subWindow = new Window("Edit Metadata"); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.setResizable(false); // subWindow.setSizeFull(); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { ProjectBean updatedBean = datahandler.getProjectFromDB(projectBean.getId()); updateUI(updatedBean, projectType); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } }); // horz.addComponent(descEdit); // horz.setComponentAlignment(descEdit, Alignment.TOP_RIGHT); // horz.setExpandRatio(investigator, 0.4f); // horz.setExpandRatio(contactPerson, 0.4f); // horz.setExpandRatio(descEdit, 0.2f); contact = new Label("", ContentMode.HTML); patientInformation = new Label("No patient information provided.", ContentMode.HTML); experimentLabel = new Label(""); statusContent = new VerticalLayout(); hlaTypeLabel = new Label("Not available.", ContentMode.HTML); hlaTypeLabel.setStyleName("patientview"); this.setCompositionRoot(vert); // this.setCompositionRoot(mainLayout); }
From source file:dev.DevUI.java
License:Open Source License
@Override protected void init(VaadinRequest request) { final VerticalLayout mainLayout = new VerticalLayout(); mainLayout.setSpacing(true);//from w w w . j ava 2s.c o m mainLayout.setMargin(true); PluploadManager mgr = createUploadManager("Manager 1"); PluploadManager mgr2 = createUploadManager("Manager 2"); PluploadManager mgr3 = createChunkingUploadManager("Manager 3"); mgr.getUploader().addFilter(new PluploadFilter("music", "mp3,flac")); VerticalLayout dropZone = new VerticalLayout() { { addComponent(new Label("Additional drop zone for music files")); setId("music-drop-zone"); } }; mgr.getUploader().addDropZone(dropZone); mgr2.getUploader().addFilter(new PluploadFilter("images", "jpg, jpeg, png")); mgr2.getUploader().setImageResize( new PluploadImageResize().setEnabled(true).setCrop(true).setHeight(200).setWidth(400)); mainLayout.addComponent(mgr); mainLayout.addComponent(dropZone); mainLayout.addComponent(mgr2); mainLayout.addComponent(mgr3); PluploadField<File> field = createUploadField(); final Form form = new Form(); form.addField("file", field); field.addValidator(new NullValidator("file must not be null", false)); Button submit = new Button("commit form"); submit.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { form.commit(); } }); mainLayout.addComponent(form); mainLayout.addComponent(submit); PluploadField<byte[]> byteField = createByteUploadField(); mainLayout.addComponent(byteField); final Plupload uploader = createSimpleUploader(); uploader.setEnabled(false); Button b = new Button("toggle Enabled!", new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { uploader.setEnabled(!uploader.isEnabled()); } }); mainLayout.addComponent(b); mainLayout.addComponent(uploader); final Counter c = new Counter(); final Button.ClickListener l = new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { Window w = new Window("win"); if (c.get() < 5) { w.setContent(new Button("win", this)); c.increment(); } else { Field f = createUploadField(); w.setContent(f); c.reset(); } w.setWidth("400px"); w.setHeight("200px"); getUI().addWindow(w); } }; Button win = new Button("Win"); win.addClickListener(l); mainLayout.addComponent(win); Button modal = new Button("modal"); modal.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { Window w = new Window("modal"); final PluploadField f = createUploadField(); w.addCloseListener(new Window.CloseListener() { @Override public void windowClose(Window.CloseEvent e) { Notification.show("closed modal"); f.getUploader().destroy(); } }); VerticalLayout lay = new VerticalLayout(); lay.addComponent(f); lay.addComponent(new Button("destroy", new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { f.getUploader().destroy(); } })); w.setContent(lay); w.setModal(true); getUI().addWindow(w); } }); Accordion acc = new Accordion(); acc.addTab(this.createUploadManager("mgr3"), "uploader"); acc.addTab(new HorizontalLayout(), "Stub"); mainLayout.addComponent(acc); mainLayout.addComponent(modal); this.setContent(mainLayout); }