List of usage examples for com.vaadin.ui Window addCloseListener
public Registration addCloseListener(CloseListener listener)
From source file:de.symeda.sormas.ui.utils.VaadinUiUtil.java
License:Open Source License
public static Window showConfirmationPopup(String caption, Component content, String confirmCaption, String cancelCaption, Integer width, Consumer<Boolean> resultConsumer) { Window popupWindow = VaadinUiUtil.createPopupWindow(); if (width != null) { popupWindow.setWidth(width, Unit.PIXELS); } else {//from ww w .j ava2s .c om popupWindow.setWidthUndefined(); } popupWindow.setCaption(caption); VerticalLayout layout = new VerticalLayout(); layout.setMargin(true); content.setWidth(100, Unit.PERCENTAGE); layout.addComponent(content); ConfirmationComponent confirmationComponent = new ConfirmationComponent(false) { private static final long serialVersionUID = 1L; @Override protected void onConfirm() { popupWindow.close(); resultConsumer.accept(true); } @Override protected void onCancel() { popupWindow.close(); resultConsumer.accept(false); } }; confirmationComponent.getConfirmButton().setCaption(confirmCaption); confirmationComponent.getCancelButton().setCaption(cancelCaption); popupWindow.addCloseListener(new CloseListener() { private static final long serialVersionUID = 1L; @Override public void windowClose(CloseEvent e) { confirmationComponent.getCancelButton().click(); } }); layout.addComponent(confirmationComponent); layout.setComponentAlignment(confirmationComponent, Alignment.BOTTOM_RIGHT); layout.setWidth(100, Unit.PERCENTAGE); layout.setSpacing(true); popupWindow.setContent(layout); UI.getCurrent().addWindow(popupWindow); return popupWindow; }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.BiologicalSamplesComponent.java
License:Open Source License
/** * //from w w w . j a v a 2s .c om * @param id */ public void updateUI(String id) { currentID = id; sampleBioGrid = new Grid(); sampleEntityGrid = new Grid(); sampleEntityGrid.addSelectionListener(new SelectionListener() { @Override public void select(SelectionEvent event) { BeanItem<BiologicalEntitySampleBean> selectedBean = samplesEntity .getItem(sampleEntityGrid.getSelectedRow()); if (selectedBean == null) { TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity") .getComponent(); filterField.setValue(""); } else { TextField filterField = (TextField) sampleBioGrid.getHeaderRow(1).getCell("biologicalEntity") .getComponent(); filterField.setValue(selectedBean.getBean().getCode()); // samplesBio.addContainerFilter("biologicalEntity", // selectedBean.getBean().getSecondaryName(), false, false); } } }); if (id == null) return; BeanItemContainer<BiologicalSampleBean> samplesBioContainer = new BeanItemContainer<BiologicalSampleBean>( BiologicalSampleBean.class); BeanItemContainer<BiologicalEntitySampleBean> samplesEntityContainer = new BeanItemContainer<BiologicalEntitySampleBean>( BiologicalEntitySampleBean.class); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(id); List<VocabularyTerm> terms = null; Map<String, String> termsMap = new HashMap<String, String>(); for (Sample sample : allSamples) { if (sample.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_ENTITY.toString())) { Map<String, String> sampleProperties = sample.getProperties(); BiologicalEntitySampleBean newEntityBean = new BiologicalEntitySampleBean(); newEntityBean.setCode(sample.getCode()); newEntityBean.setId(sample.getIdentifier()); newEntityBean.setType(sample.getSampleTypeCode()); newEntityBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newEntityBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newEntityBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); String organismID = sampleProperties.get("Q_NCBI_ORGANISM"); newEntityBean.setOrganism(organismID); if (terms != null) { if (termsMap.containsKey(organismID)) { newEntityBean.setOrganismName(termsMap.get(organismID)); } else { for (VocabularyTerm term : terms) { if (term.getCode().equals(organismID)) { newEntityBean.setOrganismName(term.getLabel()); break; } } } } else { for (Vocabulary vocab : datahandler.getOpenBisClient().getFacade().listVocabularies()) { if (vocab.getCode().equals("Q_NCBI_TAXONOMY")) { terms = vocab.getTerms(); for (VocabularyTerm term : vocab.getTerms()) { if (term.getCode().equals(organismID)) { newEntityBean.setOrganismName(term.getLabel()); termsMap.put(organismID, term.getLabel()); break; } } break; } } } newEntityBean.setProperties(sampleProperties); newEntityBean.setGender(sampleProperties.get("Q_GENDER")); samplesEntityContainer.addBean(newEntityBean); // for (Sample child : datahandler.getOpenBisClient().getChildrenSamples(sample)) { for (Sample realChild : sample.getChildren()) { if (realChild.getSampleTypeCode().equals(sampleTypes.Q_BIOLOGICAL_SAMPLE.toString())) { // Sample realChild = // datahandler.getOpenBisClient().getSampleByIdentifier(child.getIdentifier()); Map<String, String> sampleBioProperties = realChild.getProperties(); BiologicalSampleBean newBean = new BiologicalSampleBean(); newBean.setCode(realChild.getCode()); newBean.setId(realChild.getIdentifier()); newBean.setType(realChild.getSampleTypeCode()); newBean.setPrimaryTissue(sampleBioProperties.get("Q_PRIMARY_TISSUE")); newBean.setTissueDetailed(sampleBioProperties.get("Q_TISSUE_DETAILED")); newBean.setBiologicalEntity(sample.getCode()); newBean.setAdditionalInfo(sampleBioProperties.get("Q_ADDITIONAL_INFO")); newBean.setExternalDB(sampleBioProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleBioProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleBioProperties); samplesBioContainer.addBean(newBean); } } } } numberOfBioSamples = samplesBioContainer.size(); numberOfEntitySamples = samplesEntityContainer.size(); samplesBio = samplesBioContainer; samplesEntity = samplesEntityContainer; sampleEntityGrid.removeAllColumns(); final GeneratedPropertyContainer gpcEntity = new GeneratedPropertyContainer(samplesEntity); gpcEntity.removeContainerProperty("id"); gpcEntity.removeContainerProperty("type"); gpcEntity.removeContainerProperty("organismName"); gpcEntity.removeContainerProperty("organism"); sampleEntityGrid.setContainerDataSource(gpcEntity); sampleEntityGrid.setColumnReorderingAllowed(true); gpcEntity.addGeneratedProperty("Organism", new PropertyValueGenerator<String>() { @Override public Class<String> getType() { return String.class; } @Override public String getValue(Item item, Object itemId, Object propertyId) { String ncbi = String.format( "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Undef&name=%s&lvl=0&srchmode=1&keep=1&unlock' target='_blank'>%s</a>", item.getItemProperty("organism").getValue(), item.getItemProperty("organismName").getValue()); String link = String.format("<a href='%s", ncbi); return link; } }); sampleEntityGrid.getColumn("Organism").setRenderer(new HtmlRenderer()); final GeneratedPropertyContainer gpcBio = new GeneratedPropertyContainer(samplesBio); gpcBio.removeContainerProperty("id"); gpcBio.removeContainerProperty("type"); sampleBioGrid.setContainerDataSource(gpcBio); sampleBioGrid.setColumnReorderingAllowed(true); sampleBioGrid.setColumnOrder("secondaryName", "code"); gpcEntity.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); gpcBio.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); sampleEntityGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId()); BiologicalEntitySampleBean selectedExp = (BiologicalEntitySampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleEntityGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samplesEntity.getItem(event.getItemId()); BiologicalEntitySampleBean selectedSample = (BiologicalEntitySampleBean) selected.getBean(); Window subWindow = new Window("Edit Metadata"); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(currentID); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } })); sampleEntityGrid.getColumn("edit").setWidth(70); sampleEntityGrid.getColumn("edit").setHeaderCaption(""); sampleEntityGrid.setColumnOrder("edit", "secondaryName", "Organism", "properties", "code", "additionalInfo", "gender", "externalDB"); sampleBioGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId()); BiologicalSampleBean selectedExp = (BiologicalSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleBioGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samplesBio.getItem(event.getItemId()); try { BiologicalSampleBean selectedSample = (BiologicalSampleBean) selected.getBean(); Window subWindow = new Window(); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setResizable(false); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(currentID); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } catch (NullPointerException e) { System.err.println("NullPointerException while trying to set metadata: " + e.getMessage()); } } })); sampleBioGrid.getColumn("edit").setWidth(70); sampleBioGrid.getColumn("edit").setHeaderCaption(""); sampleBioGrid.setColumnOrder("edit", "secondaryName", "primaryTissue", "properties", "tissueDetailed", "code", "additionalInfo", "biologicalEntity", "externalDB"); sampleBioGrid.getColumn("biologicalEntity").setHeaderCaption("Source"); helpers.GridFunctions.addColumnFilters(sampleBioGrid, gpcBio); helpers.GridFunctions.addColumnFilters(sampleEntityGrid, gpcEntity); if (fileDownloaderSources != null) exportSources.removeExtension(fileDownloaderSources); StreamResource srSource = Utils.getTSVStream(Utils.containerToString(samplesEntityContainer), String.format("%s_%s_", id.substring(1).replace("/", "_"), "sample_sources")); fileDownloaderSources = new FileDownloader(srSource); fileDownloaderSources.extend(exportSources); if (fileDownloaderSamples != null) exportSamples.removeExtension(fileDownloaderSamples); StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samplesBioContainer), String.format("%s_%s_", id.substring(1).replace("/", "_"), "extracted_samples")); fileDownloaderSamples = new FileDownloader(srSamples); fileDownloaderSamples.extend(exportSamples); this.buildLayout(); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java
License:Open Source License
public void updateUI(String type, String id, String filterFor) { sampleGrid = new Grid(); typeString = type;// w w w . ja v a 2s .c o m idString = id; filterString = filterFor; if (id == null) return; try { HierarchicalContainer datasetContainer = new HierarchicalContainer(); datasetContainer.addContainerProperty("Select", CheckBox.class, null); datasetContainer.addContainerProperty("Project", String.class, null); datasetContainer.addContainerProperty("Sample", String.class, null); datasetContainer.addContainerProperty("Description", String.class, null); // datasetContainer.addContainerProperty("Sample Type", String.class, null); datasetContainer.addContainerProperty("File Name", String.class, null); datasetContainer.addContainerProperty("File Type", String.class, null); datasetContainer.addContainerProperty("Dataset Type", String.class, null); datasetContainer.addContainerProperty("Registration Date", String.class, null); datasetContainer.addContainerProperty("Validated", Boolean.class, null); datasetContainer.addContainerProperty("File Size", String.class, null); datasetContainer.addContainerProperty("file_size_bytes", Long.class, null); datasetContainer.addContainerProperty("dl_link", String.class, null); datasetContainer.addContainerProperty("isDirectory", Boolean.class, null); datasetContainer.addContainerProperty("CODE", String.class, null); List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasetsAll = null; List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); Map<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>> datasetFilter = new HashMap<String, ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>>(); // clear download queue for new view PortletSession portletSession = ((QbicmainportletUI) UI.getCurrent()).getPortletSession(); portletSession.setAttribute("qbic_download", new HashMap<String, AbstractMap.SimpleEntry<String, Long>>(), PortletSession.APPLICATION_SCOPE); Map<String, Sample> checkedTestSamples = new HashMap<String, Sample>(); switch (type) { case "project": String projectIdentifier = id; retrievedDatasetsAll = datahandler.getOpenBisClient() .getDataSetsOfProjectByIdentifierWithSearchCriteria(projectIdentifier); for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : retrievedDatasetsAll) { ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> values = datasetFilter .get(ds.getSampleIdentifierOrNull()); if (values == null) { values = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); datasetFilter.put(ds.getSampleIdentifierOrNull(), values); } values.add(ds); } if (filterFor.equals("measured")) { BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>( TestSampleBean.class); // List<Sample> allSamples = // datahandler.getOpenBisClient() // .getSamplesOfProjectBySearchService(projectIdentifier); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(id); for (Sample sample : allSamples) { checkedTestSamples.put(sample.getCode(), sample); if (sample.getSampleTypeCode().equals("Q_TEST_SAMPLE")) { // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(), // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null, // null)); Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(sample.getSampleTypeCode()); newBean.setSampleType(sampleProperties.get("Q_SAMPLE_TYPE")); newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } for (Sample child : sample.getChildren()) { foundDataset = datasetFilter.get(child.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } } } else if (sample.getSampleTypeCode().equals("Q_MHC_LIGAND_EXTRACT")) { // samplesContainer.addBean(new SampleBean(sample.getIdentifier(), sample.getCode(), // sample.getSampleTypeCode(), null, null, null, sample.getProperties(), null, // null)); Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(sample.getSampleTypeCode()); newBean.setSampleType(sampleProperties.get("Q_MHC_CLASS")); newBean.setAdditionalInfo(sampleProperties.get("Q_ANTIBODY")); newBean.setExternalDB(sampleProperties.get("Q_EXTERNALDB_ID")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } for (Sample child : sample.getChildren()) { foundDataset = datasetFilter.get(child.getIdentifier()); if (foundDataset != null) { retrievedDatasets.addAll(foundDataset); } } } } numberOfSamples = samplesContainer.size(); samples = samplesContainer; final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples); gpc.removeContainerProperty("id"); gpc.removeContainerProperty("type"); sampleGrid.setContainerDataSource(gpc); sampleGrid.setColumnReorderingAllowed(true); gpc.addGeneratedProperty("edit", new PropertyValueGenerator<String>() { @Override public String getValue(Item item, Object itemId, Object propertyId) { return "Edit"; } @Override public Class<String> getType() { return String.class; } }); sampleGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedExp = (TestSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); sampleGrid.getColumn("edit").setRenderer(new ButtonRenderer(new RendererClickListener() { @Override public void click(RendererClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedSample = (TestSampleBean) selected.getBean(); Window subWindow = new Window("Edit Metadata"); changeMetadata.updateUI(selectedSample.getId(), selectedSample.getType()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.setResizable(false); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { updateUI(typeString, idString, filterString); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } })); sampleGrid.getColumn("edit").setHeaderCaption(""); sampleGrid.getColumn("edit").setWidth(70); sampleGrid.setColumnOrder("edit", "secondaryName", "sampleType", "code", "properties", "additionalInfo", "externalDB"); helpers.GridFunctions.addColumnFilters(sampleGrid, gpc); numberOfSamples = samplesContainer.size(); sampleGrid.setCaption("Measured Samples"); this.datasetTable.setCaption("Raw Data"); numberOfDatasets = retrievedDatasets.size(); this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10))); // sampleGrid.setHeightMode(HeightMode.ROW); // sampleGrid.setHeightByRows(numberOfSamples); } else if (filterFor.equals("results")) { BeanItemContainer<TestSampleBean> samplesContainer = new BeanItemContainer<TestSampleBean>( TestSampleBean.class); List<Sample> allSamples = datahandler.getOpenBisClient() .getSamplesWithParentsAndChildrenOfProjectBySearchService(projectIdentifier); for (Sample sample : allSamples) { checkedTestSamples.put(sample.getCode(), sample); if (!sample.getSampleTypeCode().equals("Q_TEST_SAMPLE") && !sample.getSampleTypeCode().equals("Q_MICROARRAY_RUN") && !sample.getSampleTypeCode().equals("Q_MS_RUN") && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_SAMPLE") && !sample.getSampleTypeCode().equals("Q_BIOLOGICAL_ENTITY") && !sample.getSampleTypeCode().equals("Q_NGS_SINGLE_SAMPLE_RUN")) { Map<String, String> sampleProperties = sample.getProperties(); TestSampleBean newBean = new TestSampleBean(); newBean.setCode(sample.getCode()); newBean.setId(sample.getIdentifier()); newBean.setType(prettyNameMapper.getPrettyName(sample.getSampleTypeCode())); newBean.setAdditionalInfo(sampleProperties.get("Q_ADDITIONAL_INFO")); newBean.setSecondaryName(sampleProperties.get("Q_SECONDARY_NAME")); newBean.setProperties(sampleProperties); samplesContainer.addBean(newBean); ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet> foundDataset = datasetFilter .get(sample.getIdentifier()); if (foundDataset != null) { for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet ds : foundDataset) { // we don't want to show project data or log files in the results tab if (ds.getDataSetTypeCode().equals("Q_PROJECT_DATA")) { if (ds.getProperties().get("Q_ATTACHMENT_TYPE").equals("INFORMATION")) { continue; } else { retrievedDatasets.add(ds); } } else if (ds.getDataSetTypeCode().contains("LOGS")) { continue; } else { retrievedDatasets.add(ds); } } // retrievedDatasets.addAll(foundDataset); } } } // numberOfSamples = samplesContainer.size(); samples = samplesContainer; final GeneratedPropertyContainer gpc = new GeneratedPropertyContainer(samples); gpc.removeContainerProperty("id"); gpc.removeContainerProperty("sampleType"); sampleGrid.setContainerDataSource(gpc); sampleGrid.setColumnReorderingAllowed(true); sampleGrid.setColumnOrder("secondaryName", "type", "code", "properties"); numberOfSamples = samplesContainer.size(); // sampleGrid.setHeightMode(HeightMode.ROW); // sampleGrid.setHeightByRows(numberOfSamples); sampleGrid.setCaption("Workflow Runs"); helpers.GridFunctions.addColumnFilters(sampleGrid, gpc); this.datasetTable.setCaption("Result Files"); datasetTable.setColumnHeader("Sample", "Workflow Run"); sampleGrid.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { BeanItem selected = (BeanItem) samples.getItem(event.getItemId()); TestSampleBean selectedExp = (TestSampleBean) selected.getBean(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); message.add(selectedExp.getId()); message.add("sample"); state.notifyObservers(message); } }); numberOfDatasets = retrievedDatasets.size(); this.datasetTable.setPageLength(Math.max(3, Math.min(numberOfDatasets, 10))); } break; case "experiment": String experimentIdentifier = id; retrievedDatasets = datahandler.getOpenBisClient() .getDataSetsOfExperimentByCodeWithSearchCriteria(experimentIdentifier); break; case "sample": String sampleIdentifier = id; String sampleCode = sampleIdentifier.split("/")[2]; retrievedDatasets = datahandler.getOpenBisClient().getDataSetsOfSample(sampleCode); break; default: retrievedDatasets = new ArrayList<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet>(); break; } BeanItemContainer<DatasetBean> forExport = new BeanItemContainer(DatasetBean.class); numberOfDatasets = retrievedDatasets.size(); if (numberOfDatasets == 0 & filterFor.equals("measured")) { descriptionLabel = new Label(String.format( "This project contains %s measured samples for which %s raw data dataset(s) have been registered.", numberOfSamples, 0), ContentMode.HTML); helpers.Utils.Notification("No raw data available.", "No raw data is available for this project. Please contact the project manager if this is not expected.", "warning"); } else if (numberOfDatasets == 0 & filterFor.equals("results")) { descriptionLabel = new Label(String.format("This project contains %s result datasets.", 0), ContentMode.HTML); helpers.Utils.Notification("No results available.", "No result data is available for this project. Please contact the project manager if this is not expected.", "warning"); } else { Map<String, String> samples = new HashMap<String, String>(); // project same for all datasets String projectCode = retrievedDatasets.get(0).getExperimentIdentifier().split("/")[2]; for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet dataset : retrievedDatasets) { samples.put(dataset.getCode(), dataset.getSampleIdentifierOrNull().split("/")[2]); } List<DatasetBean> dsBeans = datahandler.queryDatasetsForFolderStructure(retrievedDatasets); for (DatasetBean d : dsBeans) { Date date = d.getRegistrationDate(); SimpleDateFormat sd = new SimpleDateFormat("yyyy-MM-dd hh:mm a"); String dateString = sd.format(date); // Timestamp ts = Timestamp.valueOf(dateString); String sampleID = samples.get(d.getCode()); forExport.addBean(d); Sample dsSample = checkedTestSamples.get(sampleID); String secNameDS = d.getProperties().get("Q_SECONDARY_NAME"); String secName = datahandler.getSecondaryName(dsSample, secNameDS); registerDatasetInTable(d, datasetContainer, projectCode, sampleID, dateString, null, secName); } if (filterFor.equals("measured")) { descriptionLabel = new Label(String.format( "This project contains %s measured samples for which %s raw data dataset(s) have been registered.", numberOfSamples, dsBeans.size()), ContentMode.HTML); } else if (filterFor.equals("results")) { descriptionLabel = new Label( String.format("This project contains %s result datasets.", dsBeans.size()), ContentMode.HTML); } } this.setContainerDataSource(datasetContainer); if (fileDownloaderData != null) this.exportData.removeExtension(fileDownloaderData); StreamResource srData = Utils.getTSVStream(Utils.containerToString(forExport), String.format("%s_%s_", id.substring(1).replace("/", "_"), datasetTable.getCaption().replace(" ", "_"))); fileDownloaderData = new FileDownloader(srData); fileDownloaderData.extend(exportData); if (fileDownloaderSamples != null) this.exportSamples.removeExtension(fileDownloaderSamples); StreamResource srSamples = Utils.getTSVStream(Utils.containerToString(samples), String.format("%s_%s_", id.substring(1).replace("/", "_"), sampleGrid.getCaption().replaceAll(" ", "_"))); fileDownloaderSamples = new FileDownloader(srSamples); fileDownloaderSamples.extend(exportSamples); } catch (Exception e) { e.printStackTrace(); LOGGER.error(String.format("getting dataset failed for dataset %s %s", type, id), e.getStackTrace()); } }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjInformationComponent.java
License:Open Source License
private void initUI() { vert = new VerticalLayout(); descHorz = new HorizontalLayout(); // horz = new HorizontalLayout(); statusPanel = new Panel(); descriptionPanel = new Panel(); datasetTable = buildFilterTable();//from www. j ava2s . com peopleInCharge = new Accordion(); setResponsive(true); vert.setResponsive(true); descHorz.setResponsive(true); statusPanel.setResponsive(true); descriptionPanel.setResponsive(true); vert.setMargin(new MarginInfo(true, true, false, false)); setSizeFull(); vert.setSizeFull(); descHorz.setSizeFull(); statusPanel.setSizeFull(); descriptionPanel.setSizeFull(); investigator = new Label("", ContentMode.HTML); contactPerson = new Label("", ContentMode.HTML); projectManager = new Label("", ContentMode.HTML); final VerticalLayout layoutI = new VerticalLayout(investigator); final VerticalLayout layoutC = new VerticalLayout(contactPerson); final VerticalLayout layoutP = new VerticalLayout(projectManager); layoutI.setMargin(true); layoutC.setMargin(true); layoutP.setMargin(true); peopleInCharge.addTab(layoutI, "Investigator"); peopleInCharge.addTab(layoutC, "Contact Person"); peopleInCharge.addTab(layoutP, "Project Manager"); descEdit = new Button("Edit"); descEdit.setIcon(FontAwesome.PENCIL); descEdit.setStyleName(ValoTheme.BUTTON_BORDERLESS_COLORED); descEdit.setResponsive(true); descEdit.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { changeMetadata.updateUI(projectBean); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.addComponent(changeMetadata); Window subWindow = new Window("Edit Metadata"); subWindow.setContent(subContent); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setIcon(FontAwesome.PENCIL); subWindow.setHeight("75%"); subWindow.setResizable(false); // subWindow.setSizeFull(); subWindow.addCloseListener(new CloseListener() { /** * */ private static final long serialVersionUID = -1329152609834711109L; @Override public void windowClose(CloseEvent e) { ProjectBean updatedBean = datahandler.getProjectFromDB(projectBean.getId()); updateUI(updatedBean, projectType); } }); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); ui.addWindow(subWindow); } }); // horz.addComponent(descEdit); // horz.setComponentAlignment(descEdit, Alignment.TOP_RIGHT); // horz.setExpandRatio(investigator, 0.4f); // horz.setExpandRatio(contactPerson, 0.4f); // horz.setExpandRatio(descEdit, 0.2f); contact = new Label("", ContentMode.HTML); patientInformation = new Label("No patient information provided.", ContentMode.HTML); experimentLabel = new Label(""); statusContent = new VerticalLayout(); hlaTypeLabel = new Label("Not available.", ContentMode.HTML); hlaTypeLabel.setStyleName("patientview"); this.setCompositionRoot(vert); // this.setCompositionRoot(mainLayout); }
From source file:dev.DevUI.java
License:Open Source License
@Override protected void init(VaadinRequest request) { final VerticalLayout mainLayout = new VerticalLayout(); mainLayout.setSpacing(true);//from ww w . ja va 2s . c o m mainLayout.setMargin(true); PluploadManager mgr = createUploadManager("Manager 1"); PluploadManager mgr2 = createUploadManager("Manager 2"); PluploadManager mgr3 = createChunkingUploadManager("Manager 3"); mgr.getUploader().addFilter(new PluploadFilter("music", "mp3,flac")); VerticalLayout dropZone = new VerticalLayout() { { addComponent(new Label("Additional drop zone for music files")); setId("music-drop-zone"); } }; mgr.getUploader().addDropZone(dropZone); mgr2.getUploader().addFilter(new PluploadFilter("images", "jpg, jpeg, png")); mgr2.getUploader().setImageResize( new PluploadImageResize().setEnabled(true).setCrop(true).setHeight(200).setWidth(400)); mainLayout.addComponent(mgr); mainLayout.addComponent(dropZone); mainLayout.addComponent(mgr2); mainLayout.addComponent(mgr3); PluploadField<File> field = createUploadField(); final Form form = new Form(); form.addField("file", field); field.addValidator(new NullValidator("file must not be null", false)); Button submit = new Button("commit form"); submit.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { form.commit(); } }); mainLayout.addComponent(form); mainLayout.addComponent(submit); PluploadField<byte[]> byteField = createByteUploadField(); mainLayout.addComponent(byteField); final Plupload uploader = createSimpleUploader(); uploader.setEnabled(false); Button b = new Button("toggle Enabled!", new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { uploader.setEnabled(!uploader.isEnabled()); } }); mainLayout.addComponent(b); mainLayout.addComponent(uploader); final Counter c = new Counter(); final Button.ClickListener l = new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { Window w = new Window("win"); if (c.get() < 5) { w.setContent(new Button("win", this)); c.increment(); } else { Field f = createUploadField(); w.setContent(f); c.reset(); } w.setWidth("400px"); w.setHeight("200px"); getUI().addWindow(w); } }; Button win = new Button("Win"); win.addClickListener(l); mainLayout.addComponent(win); Button modal = new Button("modal"); modal.addClickListener(new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { Window w = new Window("modal"); final PluploadField f = createUploadField(); w.addCloseListener(new Window.CloseListener() { @Override public void windowClose(Window.CloseEvent e) { Notification.show("closed modal"); f.getUploader().destroy(); } }); VerticalLayout lay = new VerticalLayout(); lay.addComponent(f); lay.addComponent(new Button("destroy", new Button.ClickListener() { @Override public void buttonClick(Button.ClickEvent event) { f.getUploader().destroy(); } })); w.setContent(lay); w.setModal(true); getUI().addWindow(w); } }); Accordion acc = new Accordion(); acc.addTab(this.createUploadManager("mgr3"), "uploader"); acc.addTab(new HorizontalLayout(), "Stub"); mainLayout.addComponent(acc); mainLayout.addComponent(modal); this.setContent(mainLayout); }
From source file:edu.nps.moves.mmowgli.modules.gamemaster.UserAdminPanel.java
License:Open Source License
@SuppressWarnings("serial") Table createTable(TableFiller filler) {//from ww w .j av a 2 s .co m final Table tab = new Table(); tab.setStyleName("m-useradmintable"); tab.setWidth("920px"); tab.setHeight("100%"); tab.setPageLength(40); // Special column renderers Table.ColumnGenerator colGen = new columnCustomizer(); tab.addGeneratedColumn(USER_ID_COL, colGen); tab.addGeneratedColumn(ADMIN_COL, colGen); tab.addGeneratedColumn(DESIGNER_COL, colGen); tab.addGeneratedColumn(LOCKEDOUT_COL, colGen); tab.addGeneratedColumn(TWEETER_COL, colGen); tab.addGeneratedColumn(GAMEMASTER_COL, colGen); tab.addGeneratedColumn(EMAIL_COL, colGen); tab.addGeneratedColumn(CONFIRMED_COL, colGen); filler.fillTable(tab); tab.setColumnWidth(USER_ID_COL, 25); tab.setColumnWidth(ADMIN_COL, 25); tab.setColumnWidth(GAMEMASTER_COL, 25); tab.setColumnWidth(DESIGNER_COL, 25); tab.setColumnWidth(LOCKEDOUT_COL, 43); tab.setColumnWidth(TWEETER_COL, 50); tab.setColumnWidth(UNAME_COL, 120); tab.setColumnWidth(FIRSTNAME_COL, 108); //128); tab.setColumnWidth(LASTNAME_COL, 108); //128); tab.setColumnWidth(EMAIL_COL, 190); tab.setColumnWidth(CONFIRMED_COL, 67); tab.setEditable(false); tab.setSelectable(true); tab.setImmediate(true); // to immed update view tab.setNullSelectionAllowed(false); // can't deselect a row tab.addItemClickListener(new ItemClickListener() { EditPanel ep; @Override @MmowgliCodeEntry @HibernateOpened @HibernateClosed @HibernateUserRead public void itemClick(ItemClickEvent event) { if (event.isDoubleClick()) { HSess.init(); Window w = new Window("Edit Player Account"); w.setWidth("620px"); w.setHeight("505px"); w.setModal(true); @SuppressWarnings({ "unchecked" }) final QuickUser qu = (QuickUser) ((BeanItem<QuickUser>) event.getItem()).getBean(); User u = User.getTL(qu.getId()); if (u == null) { // This has been happening infrequently...some error on signup where (maybe) a user object gets created // but doesn't make it into the db. Notification.show("Woops, database error!", "A player account identified by id = " + qu.getId() + " is not in the database.", Notification.Type.ERROR_MESSAGE); HSess.close(); return; } VerticalLayout vl = new VerticalLayout(); w.setContent(vl); vl.addComponent(ep = new EditPanel(w, qu.getId())); ep.setWidth("100%"); UI.getCurrent().addWindow(w); w.center(); w.addCloseListener(new CloseListener() { @Override public void windowClose(CloseEvent e) { if (ep.user != null) { BeanItem<QuickUser> bi = lastTableFiller.getContainer().getItem(ep.user.getId()); QuickUser qu = bi.getBean(); qu.update(ep.user); tab.refreshRowCache(); } } }); HSess.close(); } } }); return tab; }
From source file:edu.nps.moves.mmowgli.modules.registrationlogin.RegistrationPageBase.java
License:Open Source License
@SuppressWarnings("serial") public static void openPopupWindow(final UI browserWindow, Window popup, int topOffset) { popup.setModal(true);/* w w w . j a v a 2 s . c o m*/ browserWindow.addWindow(popup); popup.center(); browserWindow.setScrollTop(topOffset); popup.addCloseListener(new CloseListener() { @Override public void windowClose(CloseEvent e) { browserWindow.setScrollTop(0); } }); }
From source file:edu.nps.moves.mmowgli.modules.registrationlogin.RegistrationPageBase.java
License:Open Source License
@SuppressWarnings("serial") @HibernateUserRead/*w w w . j a v a 2 s.c o m*/ public void checkUserLimitsTL() { Serializable uid = Mmowgli2UI.getGlobals().getUserID(); if (uid != NO_LOGGEDIN_USER_ID) { // can't do this check if we don't have a user yet MSysOut.println(DEBUG_LOGS, "User.getTL() in RegistrationPageBase.checkUserLimitsTL()"); User u = User.getTL(uid); if (u != null) // why should it be? if (u.getUserName() != null) // why should it be? if (u.isGameMaster())//getUserName().toLowerCase().startsWith("gm_")) return; } int maxIn = Game.getTL().getMaxUsersOnline(); // List<User> lis = (List<User>)HibernateContainers.getSession().createCriteria(User.class).add(Restrictions.eq("online", true)).list(); // if(lis.size()>=maxIn) { if (Mmowgli2UI.getGlobals().getSessionCount() >= maxIn) { // new improved lockedOut = true; VerticalLayout vl = new VerticalLayout(); vl.setWidth("325px"); vl.addStyleName("m-errorNotificationEquivalent"); vl.setSpacing(false); vl.setMargin(true); Label lab = new Label("We're loaded to the max with players right now."); lab.setSizeUndefined(); vl.addComponent(lab); lab = new Label("Idle players are timed-out after 15 minutes."); lab.setSizeUndefined(); vl.addComponent(lab); lab = new Label("Please try again later."); lab.setSizeUndefined(); vl.addComponent(lab); Window win = new Window("Sorry, but...."); win.setSizeUndefined(); win.addStyleName("m-transparent"); win.setWidth("308px"); win.setResizable(false); win.setContent(vl); openPopupWindowInMainWindow(win, 400); win.setModal(false); win.addCloseListener(new CloseListener() { @Override @MmowgliCodeEntry @HibernateOpened @HibernateClosed public void windowClose(CloseEvent e) { HSess.init(); Mmowgli2UI.getAppUI().quitAndGoTo(GameLinks.getTL().getGameFullLink()); HSess.close(); } }); } }
From source file:fi.vtt.RVaadin.RContainer.java
License:Apache License
/** * Generate a preview Window of R data.frame with Excel download option. * //from w w w .jav a 2 s . c o m * @param rs * R string which evaluates into R data.frame * @param caption * Window caption * @param maxRows * Maximum number of rows shown in the window. Value null uses * the internal default. * @param width * Explicit width of the table, or null for automatic width. * @return Vaadin Window */ public Window getRTableWindow(String rs, String caption, Integer maxRows, String width) { final Integer DEFAULT_MAX_ROWS = 15; /* Initiate a new SpreadSheetFacotry, if it does not exist already */ if (ssf == null) { ssf = new SpreadSheetFactory(); } /* Initiate the Table showing the data.frame */ RTable table = getRTable(rs); /* Show only part of large tables */ if (maxRows == null) { maxRows = DEFAULT_MAX_ROWS; } if (table.getDataFrame().nrow() >= maxRows) { table.setPageLength(maxRows); table.setCacheRate(2.0); } if (width != null) { table.setWidth(width); } DataFrame df = table.getDataFrame(); String[] columnNames = table.getColumnNames(); /* The element with XLSX download button */ final SpreadSheetDownload ssd = new SpreadSheetDownload(df, columnNames, null, null, ssf); HorizontalLayout ssdBox = new HorizontalLayout(); ssdBox.setHeight("23px"); ssdBox.addComponent(ssd); Window window = new Window(caption); VerticalLayout root = new VerticalLayout(); root.setSpacing(true); root.setMargin(true); window.setContent(root); root.addComponent(ssdBox); root.addComponent(table); @SuppressWarnings("serial") Window.CloseListener windowListener = new Window.CloseListener() { @Override public void windowClose(CloseEvent e) { /* Delete the XLSX file, if it was generated */ ssd.clear(); } }; window.addCloseListener(windowListener); return window; }
From source file:io.mateu.ui.vaadin.framework.MyUI.java
License:Apache License
public void showInWindow(String caption, Component vaadinComponent, Window.CloseListener closeListener) { // Create a sub-window and set the content Window subWindow = new Window(caption); subWindow.setContent(vaadinComponent); if (closeListener != null) subWindow.addCloseListener(closeListener); // Center it in the browser window subWindow.center();//from w w w.j a va 2s. co m subWindow.setModal(true); // Open it in the UI UI.getCurrent().addWindow(subWindow); }