Example usage for com.vaadin.ui VerticalLayout setWidth

List of usage examples for com.vaadin.ui VerticalLayout setWidth

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Introduction

In this page you can find the example usage for com.vaadin.ui VerticalLayout setWidth.

Prototype

@Override
    public void setWidth(String width)

Source Link

Usage

From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.PopupRecombineDiseaseGroups.java

private void initPopupLayout() {

    int h = 0;//(default_DiseaseCat_DiseaseGroupMap.size() * 33) + 300;
    for (Map<String, String> m : default_DiseaseCat_DiseaseGroupMap.values()) {
        if (h < m.size()) {
            h = m.size();//from   w w  w  .j a v  a2s  .c  om
        }
    }
    h = (h * 26) + 200;
    int w = 700;
    if (Page.getCurrent().getBrowserWindowHeight() - 280 < h) {
        h = Page.getCurrent().getBrowserWindowHeight() - 280;
    }
    if (Page.getCurrent().getBrowserWindowWidth() < w) {
        w = Page.getCurrent().getBrowserWindowWidth();
    }

    popupWindow.setWidth(w + "px");
    popupWindow.setHeight(h + "px");

    popupBodyLayout.setWidth((w - 50) + "px");

    Set<String> diseaseSet = Quant_Central_Manager.getDiseaseCategorySet();

    diseaseTypeSelectionList.setDescription("Select disease category");

    for (String disease : diseaseSet) {
        diseaseTypeSelectionList.addItem(disease);
        diseaseTypeSelectionList.setItemCaption(disease, (disease));

    }

    HorizontalLayout diseaseCategorySelectLayout = new HorizontalLayout();
    diseaseCategorySelectLayout.setWidthUndefined();
    diseaseCategorySelectLayout.setHeight("50px");
    diseaseCategorySelectLayout.setSpacing(true);
    diseaseCategorySelectLayout.setMargin(true);

    popupBodyLayout.addComponent(diseaseCategorySelectLayout);
    popupBodyLayout.setComponentAlignment(diseaseCategorySelectLayout, Alignment.TOP_LEFT);

    Label title = new Label("Disease Category");
    title.setStyleName(Reindeer.LABEL_SMALL);
    diseaseCategorySelectLayout.addComponent(title);

    diseaseCategorySelectLayout.setComponentAlignment(title, Alignment.BOTTOM_CENTER);
    diseaseTypeSelectionList.setWidth("200px");
    diseaseTypeSelectionList.setNullSelectionAllowed(false);
    diseaseTypeSelectionList.setValue("All");
    diseaseTypeSelectionList.setImmediate(true);
    diseaseCategorySelectLayout.addComponent(diseaseTypeSelectionList);
    diseaseCategorySelectLayout.setComponentAlignment(diseaseTypeSelectionList, Alignment.TOP_LEFT);
    diseaseTypeSelectionList.setStyleName("diseaseselectionlist");
    diseaseTypeSelectionList.addValueChangeListener(new Property.ValueChangeListener() {

        @Override
        public void valueChange(Property.ValueChangeEvent event) {
            boolean showAll = false;
            String value = event.getProperty().getValue().toString();
            if (value.equalsIgnoreCase("All")) {
                showAll = true;
            }
            for (String dName : diseaseGroupsGridLayoutMap.keySet()) {
                if (dName.equalsIgnoreCase(value) || showAll) {
                    diseaseGroupsGridLayoutMap.get(dName).setVisible(true);
                } else {
                    diseaseGroupsGridLayoutMap.get(dName).setVisible(false);
                }
            }

        }
    });

    VerticalLayout diseaseGroupsNamesContainer = new VerticalLayout();
    diseaseGroupsNamesContainer.setWidth("100%");
    diseaseGroupsNamesContainer.setHeightUndefined();
    popupBodyLayout.addComponent(diseaseGroupsNamesContainer);
    diseaseGroupsNamesContainer.setStyleName(Reindeer.LAYOUT_WHITE);
    GridLayout diseaseNamesHeader = new GridLayout(2, 1);
    diseaseNamesHeader.setWidth("100%");
    diseaseNamesHeader.setHeightUndefined();
    diseaseNamesHeader.setSpacing(true);
    diseaseNamesHeader.setMargin(new MarginInfo(true, false, true, false));
    diseaseGroupsNamesContainer.addComponent(diseaseNamesHeader);
    Label col1Label = new Label("Group Name");
    diseaseNamesHeader.addComponent(col1Label, 0, 0);
    col1Label.setStyleName(Reindeer.LABEL_SMALL);

    Label col2Label = new Label("Suggested Name");
    diseaseNamesHeader.addComponent(col2Label, 1, 0);
    col2Label.setStyleName(Reindeer.LABEL_SMALL);

    Panel diseaseGroupsNamesFrame = new Panel();
    diseaseGroupsNamesFrame.setWidth("100%");
    diseaseGroupsNamesFrame.setHeight((h - 200) + "px");
    diseaseGroupsNamesContainer.addComponent(diseaseGroupsNamesFrame);
    diseaseGroupsNamesFrame.setStyleName(Reindeer.PANEL_LIGHT);

    VerticalLayout diseaseNamesUpdateContainerLayout = new VerticalLayout();
    for (String diseaseCategory : diseaseSet) {
        if (diseaseCategory.equalsIgnoreCase("All")) {
            continue;
        }

        HorizontalLayout diseaseNamesUpdateContainer = initDiseaseNamesUpdateContainer(diseaseCategory);
        diseaseNamesUpdateContainerLayout.addComponent(diseaseNamesUpdateContainer);
        diseaseGroupsGridLayoutMap.put(diseaseCategory, diseaseNamesUpdateContainer);
    }
    diseaseGroupsNamesFrame.setContent(diseaseNamesUpdateContainerLayout);

    HorizontalLayout btnLayout = new HorizontalLayout();
    btnLayout.setMargin(true);
    btnLayout.setSpacing(true);

    Button resetFiltersBtn = new Button("Reset");
    resetFiltersBtn.setPrimaryStyleName("resetbtn");
    btnLayout.addComponent(resetFiltersBtn);
    resetFiltersBtn.setWidth("50px");
    resetFiltersBtn.setHeight("24px");

    resetFiltersBtn.setDescription("Reset group names to default");
    resetFiltersBtn.addClickListener(new Button.ClickListener() {
        @Override
        public void buttonClick(Button.ClickEvent event) {
            resetToDefault();
        }
    });
    Button resetToOriginalBtn = new Button("Publications Names");
    resetToOriginalBtn.setPrimaryStyleName("resetbtn");
    btnLayout.addComponent(resetToOriginalBtn);
    resetToOriginalBtn.setWidth("150px");
    resetToOriginalBtn.setHeight("24px");

    resetToOriginalBtn.setDescription("Reset group names to original publication names");
    resetToOriginalBtn.addClickListener(new Button.ClickListener() {
        @Override
        public void buttonClick(Button.ClickEvent event) {
            resetToPublicationsNames();
        }
    });

    Button applyFilters = new Button("Update");
    applyFilters.setDescription("Update disease groups with the selected names");
    applyFilters.setPrimaryStyleName("resetbtn");
    applyFilters.setWidth("50px");
    applyFilters.setHeight("24px");

    btnLayout.addComponent(applyFilters);
    applyFilters.addClickListener(new Button.ClickListener() {
        @Override
        public void buttonClick(Button.ClickEvent event) {
            updateGroups();

        }
    });

    popupBodyLayout.addComponent(btnLayout);
    popupBodyLayout.setComponentAlignment(btnLayout, Alignment.MIDDLE_RIGHT);
    resetToDefault();

}

From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.PopupRecombineDiseaseGroups.java

private HorizontalLayout initDiseaseNamesUpdateContainer(String diseaseCategory) {
    GridLayout diseaseNamesUpdateContainer = new GridLayout(2,
            (default_DiseaseCat_DiseaseGroupMap.get(diseaseCategory).size() * 2));
    diseaseNamesUpdateContainer.setWidth("100%");
    diseaseNamesUpdateContainer.setHeightUndefined();
    diseaseNamesUpdateContainer.setSpacing(false);
    diseaseNamesUpdateContainer.setMargin(new MarginInfo(false, false, false, false));

    int widthCalc = 0;
    int row = 0;/*from ww w  .  ja  v  a2  s  .c o  m*/
    int col = 0;
    Map<String, ComboBox> diseaseGroupNameToListMap = new LinkedHashMap<String, ComboBox>();
    for (String diseaseGroupName : default_DiseaseCat_DiseaseGroupMap.get(diseaseCategory).keySet()) {
        //            if(!diseaseGroupName.contains(diseaseCategory))
        //                continue;
        diseaseNamesUpdateContainer.addComponent(generateLabel(diseaseGroupName, diseaseCategory), col, row);
        ComboBox list = generateLabelList(diseaseCategory);
        diseaseNamesUpdateContainer.addComponent(list, col + 1, row);
        diseaseGroupNameToListMap.put(diseaseGroupName, list);

        col = 0;
        row++;

        VerticalLayout spacer1 = new VerticalLayout();
        spacer1.setHeight("2px");
        spacer1.setWidth("300px");
        spacer1.setStyleName(Reindeer.LAYOUT_WHITE);
        diseaseNamesUpdateContainer.addComponent(spacer1, col, row);
        VerticalLayout spacer2 = new VerticalLayout();
        spacer2.setHeight("2px");
        spacer2.setWidth("300px");
        spacer2.setStyleName(Reindeer.LAYOUT_WHITE);//"lightgraylayout");
        diseaseNamesUpdateContainer.addComponent(spacer2, col + 1, row);

        col = 0;
        row++;
        widthCalc += 26;

    }
    diseaseGroupsSelectionListMap.put(diseaseCategory, diseaseGroupNameToListMap);

    //        widthCalc-=26;
    VerticalLayout diseaseLabelContainer = new VerticalLayout();

    Label label = new Label("<center><font  color='#ffffff'>" + diseaseCategory + "</font></center>");
    label.setContentMode(ContentMode.HTML);
    diseaseLabelContainer.setHeight(widthCalc + "px");
    diseaseLabelContainer.setWidth("20px");
    VerticalLayout rotateContainer = new VerticalLayout();

    rotateContainer.setWidth(widthCalc + "px");
    rotateContainer.setHeight("20px");
    diseaseLabelContainer.addComponent(rotateContainer);

    rotateContainer.setStyleName(
            "row_" + diseaseStyleMap.get(diseaseCategory.replace(" ", "_").replace("'", "-") + ("_Disease")));
    rotateContainer.addComponent(label);
    HorizontalLayout layout = new HorizontalLayout();
    layout.setSpacing(true);
    layout.addComponent(diseaseLabelContainer);
    layout.addComponent(diseaseNamesUpdateContainer);

    return layout;
}

From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.popupreordergroups.SortableLayoutContainer.java

public final void initLists(Set<String> labels) {
    sortableDiseaseGroupLayout.removeAllComponents();
    counterLayout.removeAllComponents();
    diseaseGroupSelectOption.removeAllItems();
    selectAllSet.clear();//from ww w .  j a  v  a  2s .com
    //        fullSelectionSet.clear();
    //        fullSelectionSet.addAll(labels);
    int counter = 0;
    labelsLayoutSet.clear();
    for (final VerticalLayout component : createComponents(labels)) {
        VerticalLayout container = new VerticalLayout();
        container.setWidth(30 + "px");
        container.setHeight("20px");
        container.setStyleName("countItem");
        Label label = new Label(counter + 1 + "");
        container.addComponent(label);
        this.counterLayout.addComponent(container);
        sortableDiseaseGroupLayout.addComponent(component, strTitle);
        diseaseGroupSelectOption.addItem(counter);
        diseaseGroupSelectOption.setItemCaption(counter, "");
        autoClear = true;
        diseaseGroupSelectOption.select(counter);
        selectAllSet.add(counter);

        counter++;
    }
    autoClear = false;

}

From source file:probe.com.view.body.quantdatasetsoverview.diseasegroupsfilters.StudiesInformationPopupBtn.java

public StudiesInformationPopupBtn(QuantCentralManager Quant_Central_Manager) {
    //        super("Study Information");
    this.Quant_Central_Manager = Quant_Central_Manager;
    this.setStyleName(Reindeer.BUTTON_LINK);
    this.addStyleName("studyinfo");
    this.setDescription("Show dataset information");
    this.addClickListener(StudiesInformationPopupBtn.this);
    int selectedDsNumber = 0;
    Set<QuantDatasetObject> dsObjects = new TreeSet<QuantDatasetObject>();
    if (Quant_Central_Manager.getSelectedDiseaseGroupsComparisonList() != null
            && !Quant_Central_Manager.getSelectedDiseaseGroupsComparisonList().isEmpty()) {
        Set<QuantDiseaseGroupsComparison> compSet = Quant_Central_Manager
                .getSelectedDiseaseGroupsComparisonList();
        for (QuantDiseaseGroupsComparison comp : compSet) {
            selectedDsNumber += comp.getDatasetIndexes().length;
            for (int dsId : comp.getDatasetIndexes()) {
                DatasetInformationOverviewLayout datasetInfoLayout = new DatasetInformationOverviewLayout(
                        (Page.getCurrent().getBrowserWindowWidth() * 90 / 100),
                        Quant_Central_Manager.getDiseaseHashedColorMap());
                datasetInfoLayout.updateDatasetForm(Quant_Central_Manager.getFullQuantDatasetMap().get(dsId));
                //                    datasetInfoLayout.setWidth("100%");
                datasetInfoLayoutDSIndexMap.put(dsId, datasetInfoLayout);
                dsObjects.add(Quant_Central_Manager.getFullQuantDatasetMap().get(dsId));

            }//w  w  w.  jav a2  s.co  m
        }

    } else {
        selectedDsNumber = Quant_Central_Manager.getFilteredDatasetsList().size();
        Map<Integer, QuantDatasetObject> fullDsMap = Quant_Central_Manager.getFilteredDatasetsList();
        for (QuantDatasetObject quantDs : fullDsMap.values()) {
            DatasetInformationOverviewLayout datasetInfoLayout = new DatasetInformationOverviewLayout(
                    (Page.getCurrent().getBrowserWindowWidth() * 90 / 100),
                    Quant_Central_Manager.getDiseaseHashedColorMap());
            datasetInfoLayout.updateDatasetForm(quantDs);
            //                datasetInfoLayout.setWidth("100%");
            datasetInfoLayoutDSIndexMap.put(quantDs.getDsKey(), datasetInfoLayout);
            dsObjects.add(quantDs);

        }
    }
    this.studiesPopupLayout = new StudyPopupLayout(datasetInfoLayoutDSIndexMap);
    VerticalLayout popupBody = new VerticalLayout();
    popupBody.setWidth("100%");
    popupBody.addComponent(studiesPopupLayout);
    popupBody.setComponentAlignment(studiesPopupLayout, Alignment.TOP_CENTER);

    popupWindow = new Window() {
        @Override
        public void close() {
            popupWindow.setVisible(false);
        }
    };
    popupWindow.setContent(popupBody);
    popupWindow.setWindowMode(WindowMode.NORMAL);
    popupWindow.setWidth("95%");
    popupWindow.setHeight("95%");
    popupWindow.setVisible(false);
    popupWindow.setResizable(false);
    popupWindow.setClosable(false);
    popupWindow.setStyleName(Reindeer.WINDOW_LIGHT);
    popupWindow.setModal(true);
    popupWindow.setDraggable(false);
    popupWindow.center();

    popupWindow.setCaption(
            "<font color='gray' style='font-weight: bold;!important'>&nbsp;&nbsp;Study Information ("
                    + selectedDsNumber + ")</font>");
    studiesPopupLayout.setInformationData(dsObjects);

    UI.getCurrent().addWindow(popupWindow);
    popupWindow.center();

    popupWindow.setCaptionAsHtml(true);
    popupWindow.setClosable(true);

    popupBody.setMargin(true);
    popupBody.setSpacing(true);
    Quant_Central_Manager.registerStudySelectionListener(StudiesInformationPopupBtn.this);

}

From source file:probe.com.view.body.quantdatasetsoverview.quantproteinscomparisons.TrendLegend.java

private HorizontalLayout generateItemLabel(String label, String style) {

    HorizontalLayout labelLayout = new HorizontalLayout();
    labelLayout.setSpacing(true);/*from   w  ww .  j  a  va2 s .c  o  m*/
    labelLayout.setHeight("20px");
    VerticalLayout icon = new VerticalLayout();
    icon.setWidth("10px");
    icon.setHeight("10px");
    icon.setStyleName(style);
    labelLayout.addComponent(icon);
    labelLayout.setComponentAlignment(icon, Alignment.MIDDLE_LEFT);
    Label l = new Label("<font size='2' face='Verdana'>" + label + "</font>");
    l.setContentMode(ContentMode.HTML);
    labelLayout.addComponent(l);

    return labelLayout;

}

From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.peptidescontainer.popupcomponents.PeptideSequenceContainer.java

private void addTerminalLabels(int top, int width) {

    VerticalLayout nTerminalEdge = new VerticalLayout();
    nTerminalEdge.setWidth("19px");
    nTerminalEdge.setHeight("15px");
    nTerminalEdge.setStyleName("terminal");
    Label nLabel = new Label("N");
    nLabel.setWidth("10px");
    nLabel.setStyleName("ntermlayout");
    nTerminalEdge.addComponent(nLabel);/*from   ww w . jav a2  s .c o m*/

    this.addComponent(nTerminalEdge, "left: " + (0) + "px; top: " + (top) + "px;");

    VerticalLayout cTerminalEdge = new VerticalLayout();
    cTerminalEdge.setWidth("20px");
    cTerminalEdge.setHeight("15px");
    cTerminalEdge.setStyleName("terminal");
    Label cLabel = new Label("C");
    cLabel.setStyleName("ctermlayout");
    cTerminalEdge.addComponent(cLabel);
    cLabel.setWidth("10px");
    cTerminalEdge.setComponentAlignment(cLabel, Alignment.TOP_RIGHT);
    this.addComponent(cTerminalEdge, "left: " + (width - 21) + "px; top: " + (top) + "px;");

}

From source file:probe.com.view.body.quantdatasetsoverview.quantproteinstabsheet.studies.PeptidesComparisonsSequenceLayout.java

/**
 *
 * @param cp/*from w  w w . j  ava 2s . c  o  m*/
 * @param width
 * @param Quant_Central_Manager
 */
public PeptidesComparisonsSequenceLayout(QuantCentralManager Quant_Central_Manager,
        final DiseaseGroupsComparisonsProteinLayout cp, int width) {
    this.studiesMap = new LinkedHashMap<String, StudyInfoData>();
    this.setColumns(4);
    this.setRows(3);
    this.setWidthUndefined();
    this.setSpacing(true);
    this.setMargin(new MarginInfo(true, false, false, false));
    comparisonTitle = new Label();
    comparisonTitle.setContentMode(ContentMode.HTML);
    comparisonTitle.setStyleName("custChartLabelHeader");
    comparisonTitle.setWidth((width - 55) + "px");
    this.addComponent(comparisonTitle, 1, 0);
    this.setComponentAlignment(comparisonTitle, Alignment.TOP_LEFT);

    closeBtn = new VerticalLayout();
    closeBtn.setWidth("20px");
    closeBtn.setHeight("20px");
    closeBtn.setStyleName("closebtn");
    this.addComponent(closeBtn, 2, 0);
    this.setComponentAlignment(closeBtn, Alignment.TOP_RIGHT);
    //end of toplayout
    //init comparison study layout

    GridLayout proteinSequenceComparisonsContainer = new GridLayout(2,
            cp.getComparison().getDatasetIndexes().length);
    proteinSequenceComparisonsContainer.setWidthUndefined();
    proteinSequenceComparisonsContainer.setHeightUndefined();
    proteinSequenceComparisonsContainer.setStyleName(Reindeer.LAYOUT_WHITE);
    proteinSequenceComparisonsContainer.setSpacing(true);
    proteinSequenceComparisonsContainer.setMargin(new MarginInfo(true, false, false, false));
    this.addComponent(proteinSequenceComparisonsContainer, 1, 1);
    coverageWidth = (width - 100 - 180);

    Map<Integer, Set<QuantPeptide>> dsQuantPepMap = new HashMap<Integer, Set<QuantPeptide>>();
    for (QuantPeptide quantPep : cp.getQuantPeptidesList()) {
        if (!dsQuantPepMap.containsKey(quantPep.getDsKey())) {
            Set<QuantPeptide> subList = new HashSet<QuantPeptide>();
            dsQuantPepMap.put(quantPep.getDsKey(), subList);
        }
        Set<QuantPeptide> subList = dsQuantPepMap.get(quantPep.getDsKey());
        subList.add(quantPep);
        dsQuantPepMap.put(quantPep.getDsKey(), subList);
    }

    int numb = 0;

    int panelWidth = Page.getCurrent().getBrowserWindowWidth() - 100;
    String groupCompTitle = cp.getComparison().getComparisonHeader();
    String updatedHeader = groupCompTitle.split(" / ")[0].split("\n")[0] + " / "
            + groupCompTitle.split(" / ")[1].split("\n")[0];//+ " ( " + groupCompTitle.split(" / ")[1].split("\n")[1] + " )";
    ;
    final StudyInformationPopupComponent studyInformationPopupPanel = new StudyInformationPopupComponent(
            panelWidth, cp.getProtName(), cp.getUrl(), cp.getComparison().getComparisonFullName());
    studyInformationPopupPanel.setVisible(false);

    LayoutEvents.LayoutClickListener studyListener = new LayoutEvents.LayoutClickListener() {

        @Override
        public void layoutClick(LayoutEvents.LayoutClickEvent event) {
            Integer dsId;
            if (event.getComponent() instanceof AbsoluteLayout) {
                dsId = (Integer) ((AbsoluteLayout) event.getComponent()).getData();
            } else {
                dsId = (Integer) ((VerticalLayout) event.getComponent()).getData();
            }
            studyInformationPopupPanel.updateContent(dsToStudyLayoutMap.get(dsId));
        }
    };
    TreeSet<QuantProtein> orderSet = new TreeSet<QuantProtein>(cp.getDsQuantProteinsMap().values());
    for (QuantProtein quantProtein : orderSet) {
        StudyInfoData exportData = new StudyInfoData();
        exportData.setCoverageWidth(coverageWidth);
        Label studyTitle = new Label();//"Study " + (numb + 1));
        studyTitle.setStyleName("peptideslayoutlabel");
        studyTitle.setHeightUndefined();
        studyTitle.setWidth("200px");

        Label iconTitle = new Label("#Patients ("
                + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ")");
        exportData.setSubTitle(iconTitle.getValue());

        iconTitle.setStyleName("peptideslayoutlabel");
        iconTitle.setHeightUndefined();
        if (quantProtein.getStringPValue().equalsIgnoreCase("Not Significant")
                || quantProtein.getStringFCValue().equalsIgnoreCase("Not regulated")) {
            iconTitle.setStyleName("notregicon");
            exportData.setTrend(0);
        } else if (quantProtein.getStringFCValue().equalsIgnoreCase("Decreased")) {
            iconTitle.setStyleName("downarricon");
            exportData.setTrend(-1);
        } else {
            exportData.setTrend(1);
            iconTitle.setStyleName("uparricon");
        }

        iconTitle.setDescription(cp.getProteinAccssionNumber() + " : #Patients ("
                + (quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()) + ")  "
                + quantProtein.getStringFCValue() + " " + quantProtein.getStringPValue() + "");

        VerticalLayout labelContainer = new VerticalLayout();
        labelContainer.addComponent(studyTitle);
        labelContainer.addComponent(iconTitle);

        proteinSequenceComparisonsContainer.addComponent(labelContainer, 0, numb);
        proteinSequenceComparisonsContainer.setComponentAlignment(labelContainer, Alignment.TOP_CENTER);

        Map<Integer, ComparisonDetailsBean> patientGroupsNumToDsIdMap = new HashMap<Integer, ComparisonDetailsBean>();
        ComparisonDetailsBean pGr = new ComparisonDetailsBean();
        patientGroupsNumToDsIdMap
                .put((quantProtein.getPatientsGroupIINumber() + quantProtein.getPatientsGroupINumber()), pGr);
        QuantDatasetObject ds;

        ds = Quant_Central_Manager.getFullQuantDatasetMap().get(quantProtein.getDsKey());

        StudyPopupLayout study = new StudyPopupLayout(panelWidth, quantProtein, ds,
                cp.getProteinAccssionNumber(), cp.getUrl(), cp.getProtName(),
                Quant_Central_Manager.getDiseaseHashedColorMap());
        Set<QuantDatasetObject> qdsSet = new HashSet<QuantDatasetObject>();
        qdsSet.add(ds);
        study.setInformationData(qdsSet, cp);
        dsToStudyLayoutMap.put(ds.getDsKey(), study);

        labelContainer.addLayoutClickListener(studyListener);
        labelContainer.setData(ds.getDsKey());
        studyTitle.setValue("[" + (numb + 1) + "] " + ds.getAuthor());
        exportData.setTitle(ds.getAuthor());

        if (dsQuantPepMap.get(quantProtein.getDsKey()) == null) {
            Label noPeptidesInfoLabel = new Label("No Peptide Information Available ");
            noPeptidesInfoLabel.setHeightUndefined();
            noPeptidesInfoLabel.setStyleName("peptideslayoutlabel");
            VerticalLayout labelValueContainer = new VerticalLayout();
            labelValueContainer.addComponent(noPeptidesInfoLabel);
            labelValueContainer.addLayoutClickListener(studyListener);
            labelValueContainer.setData(ds.getDsKey());

            proteinSequenceComparisonsContainer.addComponent(labelValueContainer, 1, numb);
            proteinSequenceComparisonsContainer.setComponentAlignment(labelValueContainer,
                    Alignment.TOP_CENTER);
            numb++;
            studiesMap.put((numb + 1) + ds.getAuthor(), exportData);
            continue;
        }

        String key = "_-_" + quantProtein.getDsKey() + "_-_" + cp.getProteinAccssionNumber() + "_-_";
        PeptidesInformationOverviewLayout peptideInfoLayout = new PeptidesInformationOverviewLayout(
                cp.getSequence(), dsQuantPepMap.get(quantProtein.getDsKey()), coverageWidth, true,
                studyListener, ds.getDsKey());
        exportData.setPeptidesInfoList(peptideInfoLayout.getStackedPeptides());
        exportData.setLevelsNumber(peptideInfoLayout.getLevel());
        hasPTM = peptideInfoLayout.isHasPTM();
        peptidesInfoLayoutDSIndexMap.put(key, peptideInfoLayout);
        proteinSequenceComparisonsContainer.addComponent(peptideInfoLayout, 1, numb);
        numb++;
        studiesMap.put((numb + 1) + ds.getAuthor(), exportData);

    }

    String rgbColor = Quant_Central_Manager
            .getDiseaseHashedColor(groupCompTitle.split(" / ")[1].split("\n")[1]);
    comparisonTitle.setValue("<font color='" + rgbColor + "' style='font-weight: bold;'>" + updatedHeader
            + " (#Datasets " + numb + "/" + cp.getComparison().getDatasetIndexes().length + ")</font>");
    comparisonTitle.setDescription(cp.getComparison().getComparisonFullName());
    VerticalLayout bottomSpacer = new VerticalLayout();
    bottomSpacer.setWidth((width - 100) + "px");
    bottomSpacer.setHeight("10px");
    bottomSpacer.setStyleName("dottedline");
    this.addComponent(bottomSpacer, 1, 2);

}

From source file:probe.com.view.body.welcomelayout.PublicationsInformationWindow.java

public PublicationsInformationWindow(List<Object[]> publicationList) {

    int height = Page.getCurrent().getBrowserWindowHeight() - 100;
    int width = Page.getCurrent().getBrowserWindowWidth() - 100;
    int columnNum = width / 250;
    width = columnNum * 250;/*from   www  . j  a va  2s. c  o  m*/
    VerticalLayout popupBodyWrapper = new VerticalLayout();
    popupBodyWrapper.setWidth("100%");
    popupBodyWrapper.setHeight("100%");
    VerticalLayout popupBody = new VerticalLayout();
    popupBody.setWidth((width) + "px");
    popupBody.setHeightUndefined();
    popupBody.setStyleName(Reindeer.LAYOUT_WHITE);
    popupBody.setMargin(true);
    popupBody.setSpacing(true);
    popupBodyWrapper.addComponent(popupBody);
    popupBodyWrapper.setComponentAlignment(popupBody, Alignment.TOP_CENTER);

    popupWindow = new Window() {

        @Override
        public void close() {
            popupWindow.setVisible(false);

        }

    };

    popupWindow.setContent(popupBodyWrapper);
    popupWindow.setWindowMode(WindowMode.NORMAL);

    popupWindow.setWidth((width + 22) + "px");

    popupWindow.setVisible(false);
    popupWindow.setResizable(false);
    popupWindow.setClosable(false);
    popupWindow.setStyleName(Reindeer.WINDOW_LIGHT);
    popupWindow.setModal(true);
    popupWindow.setDraggable(false);
    popupWindow.setCaption(
            "<font color='gray' style='font-weight: bold;!important'>&nbsp;&nbsp;Publication Information</font>");

    UI.getCurrent().addWindow(popupWindow);
    popupWindow.center();

    popupWindow.setCaptionAsHtml(true);
    popupWindow.setClosable(true);

    GridLayout publicationContainer = new GridLayout();
    publicationContainer.setWidth("100%");
    publicationContainer.setSpacing(true);
    publicationContainer.setMargin(true);
    popupBody.addComponent(publicationContainer);

    publicationContainer.setColumns(columnNum);
    publicationContainer.setRows(publicationList.size());

    this.addLayoutClickListener(PublicationsInformationWindow.this);
    int row = 0;
    int col = 0;

    for (Object[] obj : publicationList) {
        VerticalLayout publicationLayout = initPublicationLayout(obj);
        String btnName = "<font size=1 >" + obj[0].toString() + "</font><br/>" + obj[1].toString()
                + "<br/><font size=1 >" + obj[2].toString() + "</font><br/><font size=1 >#Proteins: "
                + obj[5].toString() /*+ "/" + obj[5].toString() + */ + "   #Peptides: "
                + obj[7].toString() /*+ "/" + obj[7].toString() +*/ + "</font>";

        PopupInfoBtn publicationBtn = new PopupInfoBtn(publicationLayout, btnName, obj[1].toString());
        publicationContainer.addComponent(publicationBtn, col++, row);
        publicationContainer.setComponentAlignment(publicationBtn, Alignment.TOP_CENTER);
        if (col >= columnNum) {
            row++;
            col = 0;

        }
    }
    height = Math.min((++row * 85) + 200, height);
    popupWindow.setHeight((height) + "px");

}

From source file:probe.com.view.body.welcomelayout.PublicationsInformationWindow.java

private VerticalLayout initPublicationLayout(Object[] publicationData) {

    VerticalLayout publicationlayout = new VerticalLayout();
    publicationlayout.setWidth("500px");
    publicationlayout.setHeightUndefined();
    publicationlayout.setSpacing(true);/*  ww  w . j  ava2  s.c  o m*/
    publicationlayout.setMargin(new MarginInfo(false, false, false, false));
    publicationlayout.setStyleName("publicationstyle");

    Label pubmedIdLabel = new Label(
            "<h5>Pubmed Id: <a href='http://www.ncbi.nlm.nih.gov/pubmed/" + publicationData[0].toString()
                    + "' target='_blank'  ><font style:'text-decoration:underline !important;'>"
                    + publicationData[0].toString() + "</font></a></h5>");
    pubmedIdLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(pubmedIdLabel);
    pubmedIdLabel.setHeight("40px");

    Label proteinsNumLabel = new Label("<h5>#Proteins: " + publicationData[5].toString() + "</h5>");
    proteinsNumLabel.setDescription("Number of publication proteins " + publicationData[4].toString());
    proteinsNumLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(proteinsNumLabel);
    proteinsNumLabel.setHeight("40px");

    Label uproteinsNumLabel = new Label(
            "<h5>#Publication Specific Proteins: " + publicationData[4].toString() + "</h5>");
    uproteinsNumLabel
            .setDescription("Number of publication specific proteins " + publicationData[4].toString());
    uproteinsNumLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(uproteinsNumLabel);
    uproteinsNumLabel.setHeight("40px");

    Label PeptidesNumLabel = new Label("<h5>#Peptides: " + publicationData[7].toString() + "</h5>");
    PeptidesNumLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(PeptidesNumLabel);
    PeptidesNumLabel.setDescription("Number of publication peptides " + publicationData[7].toString());
    PeptidesNumLabel.setHeight("40px");

    Label uPeptidesNumLabel = new Label(
            "<h5>#Publication Specific Peptides: " + publicationData[6].toString() + "</h5>");
    uPeptidesNumLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(uPeptidesNumLabel);
    uPeptidesNumLabel
            .setDescription("Number of publication specific  peptides " + publicationData[6].toString());
    uPeptidesNumLabel.setHeight("40px");

    Label titleLabel = new Label(
            "<textarea rows='5' cols='52' readonly >" + publicationData[3].toString() + "</textarea>");
    titleLabel.setContentMode(ContentMode.HTML);
    publicationlayout.addComponent(titleLabel);
    titleLabel.setHeight("100px");

    return publicationlayout;

}

From source file:probe.com.view.body.welcomelayout.StudiesInformationWindow.java

public StudiesInformationWindow(Set<QuantDatasetObject> dsObjects, Map<String, String> diseaseHashedColorMap) {

    int height = Page.getCurrent().getBrowserWindowHeight() - 100;
    int width = Page.getCurrent().getBrowserWindowWidth() - 100;
    VerticalLayout popupBody = new VerticalLayout();
    popupBody.setWidth((width - 20) + "px");
    popupBody.setHeightUndefined();//from  w  ww. j a va  2 s  .  c  om
    popupBody.setStyleName(Reindeer.LAYOUT_WHITE);
    popupBody.setMargin(true);
    popupBody.setSpacing(true);

    popupWindow = new Window() {

        @Override
        public void close() {
            popupWindow.setVisible(false);

        }

    };

    popupWindow.setContent(popupBody);
    popupWindow.setWindowMode(WindowMode.NORMAL);
    popupWindow.setWidth((width) + "px");
    popupWindow.setHeight((height) + "px");
    popupWindow.setVisible(false);
    popupWindow.setResizable(false);
    popupWindow.setClosable(false);
    popupWindow.setStyleName(Reindeer.WINDOW_LIGHT);
    popupWindow.setModal(true);
    popupWindow.setDraggable(false);
    popupWindow.center();

    popupWindow.setCaption(
            "<font color='gray' style='font-weight: bold;!important'>&nbsp;&nbsp;Datasets Information</font>");

    UI.getCurrent().addWindow(popupWindow);
    popupWindow.center();

    popupWindow.setCaptionAsHtml(true);
    popupWindow.setClosable(true);
    this.addLayoutClickListener(StudiesInformationWindow.this);

    Map<Integer, DatasetInformationOverviewLayout> datasetInfoLayoutDSIndexMap = new HashMap<Integer, DatasetInformationOverviewLayout>();
    for (QuantDatasetObject quantDs : dsObjects) {
        DatasetInformationOverviewLayout datasetInfoLayout = new DatasetInformationOverviewLayout(width - 40,
                diseaseHashedColorMap);
        datasetInfoLayout.updateDatasetForm(quantDs);
        //                datasetInfoLayout.setWidth(width-40+"px");
        datasetInfoLayoutDSIndexMap.put(quantDs.getDsKey(), datasetInfoLayout);

    }

    StudyPopupLayout studiesPopupLayout = new StudyPopupLayout(datasetInfoLayoutDSIndexMap);

    popupBody.addComponent(studiesPopupLayout);
    popupBody.setComponentAlignment(studiesPopupLayout, Alignment.TOP_CENTER);
    studiesPopupLayout.setInformationData(dsObjects);

}