List of usage examples for com.vaadin.ui HorizontalLayout setHeight
@Override
public void setHeight(String height)
From source file:de.escidoc.admintool.view.util.LayoutHelper.java
License:Open Source License
/** * /*from ww w . ja va 2s. c o m*/ * @param labelLeft * @param labelRight * @param compLeft * @param compRight * @param widthLeft * @param widthRight * @param required * @return the constructed result. */ public static synchronized HorizontalLayout create(final String labelLeft, final String labelRight, final Label compLeft, final Label compRight, final int widthLeft, final int widthRight, final boolean required) { final HorizontalLayout hLayout = new HorizontalLayout(); hLayout.setHeight(Constants.DEFAULT_HEIGHT); hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); final Label leftLabel = new Label(Constants.P_ALIGN_RIGHT + labelLeft + Constants.P, Label.CONTENT_XHTML); leftLabel.setWidth(111, Sizeable.UNITS_PIXELS); hLayout.addComponent(leftLabel); hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); hLayout.addComponent(compLeft); hLayout.setComponentAlignment(compLeft, Alignment.BOTTOM_RIGHT); hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); final Label c = new Label(Constants.P_ALIGN_RIGHT + labelRight + Constants.P, Label.CONTENT_XHTML); hLayout.addComponent(c); hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); hLayout.addComponent(compRight); hLayout.setComponentAlignment(compRight, Alignment.BOTTOM_RIGHT); return hLayout; }
From source file:de.escidoc.admintool.view.util.LayoutHelper.java
License:Open Source License
/** * Helper method for placing components. * /*from ww w . j a va 2 s. c o m*/ * @param labelLeft * the left (leading) label. * @param labelRight * the right (leading) label. * @param compLeft * the left component. * @param compRight * the right component. * @param width * the width of the label. * @param required * true if the component is required, otherwise false. * @return the customized component placed in a horizontal layout. */ public static synchronized HorizontalLayout create(final String labelLeft, final String labelRight, final Component compLeft, final Component compRight, final int width, final boolean required) { final HorizontalLayout hor = new HorizontalLayout(); hor.setHeight(Constants.DEFAULT_HEIGHT); hor.addComponent(new Label(" ")); final String text = Constants.P_ALIGN_RIGHT + labelLeft + Constants.P; Label ll, lr; hor.addComponent(ll = new Label(text, Label.CONTENT_XHTML)); ll.setSizeUndefined(); ll.setWidth(width + Constants.PX); hor.setComponentAlignment(ll, Alignment.MIDDLE_RIGHT); if (required) { hor.addComponent(new Label(" <span style=\"color:red; position:relative; top:13px;\">*</span>", Label.CONTENT_XHTML)); } else { hor.addComponent(new Label(" ", Label.CONTENT_XHTML)); } hor.addComponent(compLeft); hor.setComponentAlignment(compLeft, Alignment.MIDDLE_RIGHT); hor.addComponent(new Label(" ", Label.CONTENT_XHTML)); final String text2 = Constants.P_ALIGN_RIGHT + labelRight + Constants.P; hor.addComponent(lr = new Label(text2, Label.CONTENT_XHTML)); lr.setSizeUndefined(); lr.setWidth(width + Constants.PX); hor.setComponentAlignment(lr, Alignment.MIDDLE_RIGHT); if (required) { hor.addComponent(new Label(" <span style=\"color:red; position:relative; top:13px;\">*</span>", Label.CONTENT_XHTML)); } else { hor.addComponent(new Label(" ", Label.CONTENT_XHTML)); } hor.addComponent(compRight); hor.setComponentAlignment(compRight, Alignment.BOTTOM_RIGHT); hor.addComponent(new Label(" ")); hor.setSpacing(false); return hor; }
From source file:de.escidoc.admintool.view.util.LayoutHelper.java
License:Open Source License
public static Component foo(final String captionForleftLabel, final String captionForRightLabel, final Label leftLabel, final Label rightLabel, final int widthLeft, final int widthRight, final boolean required) { final HorizontalLayout hLayout = new HorizontalLayout(); hLayout.setHeight("30px"); hLayout.addComponent(new Label(" ")); final Label ll = new Label(Constants.P_ALIGN_RIGHT + captionForleftLabel + Constants.P, Label.CONTENT_XHTML); ll.setSizeUndefined();/*from w w w.ja v a 2 s .co m*/ ll.setWidth(widthLeft + Constants.PX); hLayout.addComponent(ll); hLayout.setComponentAlignment(ll, Alignment.MIDDLE_RIGHT); if (required) { hLayout.addComponent(new Label(" <span style=\"color:red; position:relative; top:13px;\">*</span>", Label.CONTENT_XHTML)); } else { hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); } hLayout.addComponent(leftLabel); hLayout.setComponentAlignment(leftLabel, Alignment.BOTTOM_RIGHT); hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); Label lr; hLayout.addComponent( lr = new Label(Constants.P_ALIGN_RIGHT + captionForRightLabel + Constants.P, Label.CONTENT_XHTML)); lr.setSizeUndefined(); lr.setWidth(widthRight + Constants.PX); hLayout.setComponentAlignment(lr, Alignment.BOTTOM_RIGHT); if (required) { hLayout.addComponent(new Label(" <span style=\"color:red; position:relative; top:13px;\">*</span>", Label.CONTENT_XHTML)); } else { hLayout.addComponent(new Label(" ", Label.CONTENT_XHTML)); } hLayout.addComponent(rightLabel); hLayout.setComponentAlignment(rightLabel, Alignment.BOTTOM_RIGHT); hLayout.addComponent(new Label(" ")); hLayout.setSpacing(false); return hLayout; }
From source file:de.fzi.fhemapi.view.vaadin.ui.DeviceDetailsPanel.java
License:Apache License
@AutoGenerated private VerticalLayout buildMainLayout() { // common part: create layout VerticalLayout layout = new VerticalLayout(); layout.setImmediate(false);/*from w w w . j a v a 2s. c o m*/ layout.setWidth("100.0%"); layout.setHeight("-1"); layout.setMargin(false); HorizontalLayout titleLayout = new HorizontalLayout(); titleLayout.setImmediate(false); titleLayout.setWidth("-1"); titleLayout.setHeight("50"); titleLayout.setMargin(false); layout.addComponent(titleLayout); layout.setComponentAlignment(titleLayout, Alignment.TOP_CENTER); // deviceTitle deviceTitle = new TextField(); deviceTitle.setImmediate(true); deviceTitle.setWidth("100%"); deviceTitle.setHeight("-1px"); deviceTitle.setValue(device.getName()); deviceTitle.addListener(new Property.ValueChangeListener() { @Override public void valueChange(ValueChangeEvent event) { if (((String) event.getProperty().getValue()).length() > 1) { device.rename((String) event.getProperty().getValue()); parent.reloadTree(); } } }); titleLayout.addComponent(deviceTitle); titleLayout.setComponentAlignment(deviceTitle, Alignment.TOP_CENTER); ComboBox combobox = new ComboBox(); String[] classes = DeviceFactory.getAvailableDevicetypes(); for (String name : classes) { combobox.addItem(name); } combobox.select(device.getClass().getSimpleName()); combobox.addListener(new Property.ValueChangeListener() { @Override public void valueChange(ValueChangeEvent event) { setDeviceType((String) event.getProperty().getValue()); } }); combobox.setImmediate(true); deviceTypeHoriLayout = UIHelper.buildAttributePanel("Device Type", combobox); layout.addComponent(deviceTypeHoriLayout); layout.setComponentAlignment(deviceTypeHoriLayout, Alignment.TOP_CENTER); layout.setExpandRatio(deviceTypeHoriLayout, 1); ioDevHoriLayout = buildAttributePanel("IO Device", device.getType()); layout.addComponent(ioDevHoriLayout); layout.setComponentAlignment(ioDevHoriLayout, Alignment.TOP_CENTER); layout.setExpandRatio(ioDevHoriLayout, 1); addDeviceDetails(DevicePanelManager.getDeviceDetails(device, this), layout); return layout; }
From source file:de.fzi.fhemapi.view.vaadin.ui.NewDevicePanel.java
License:Apache License
private static HorizontalLayout getTitlePanel() { HorizontalLayout titleLayout = new HorizontalLayout(); titleLayout.setImmediate(false);/* ww w. ja v a2 s. c o m*/ titleLayout.setWidth("-1"); titleLayout.setHeight("-1"); titleLayout.setMargin(false); // deviceTitle Label title = new Label(); title.setImmediate(true); title.setWidth("100%"); title.setHeight("50"); title.setValue("<h1>Neues Gert..</h1>"); title.setContentMode(Label.CONTENT_XHTML); titleLayout.addComponent(title); titleLayout.setComponentAlignment(title, Alignment.TOP_CENTER); return titleLayout; }
From source file:de.fzi.fhemapi.view.vaadin.ui.UIHelper.java
License:Apache License
/** * Builds an attribute panel. This build a caption on the left side. This should be altered if * one would like to change the appearance of the whole UI. * @param attributeName the caption of the component * @param component a component/*from w w w . j ava 2 s. c o m*/ * @return a horizontallayout. */ public static HorizontalLayout buildAttributePanel(String attributeName, AbstractComponent component) { // common part: create layout HorizontalLayout horizontalLayout = new HorizontalLayout(); horizontalLayout.setImmediate(false); horizontalLayout.setWidth("100.0%"); horizontalLayout.setHeight("-1px"); horizontalLayout.setMargin(false); horizontalLayout.addComponent(buildRichTextField("<b>" + attributeName + "</b>")); horizontalLayout.addComponent(component); component.setCaption(attributeName); // component.set return horizontalLayout; }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.AddPatientView.java
License:Open Source License
/** * /*from ww w . jav a 2 s.c o m*/ * @return */ VerticalLayout initButtonLayout() { registerPatients = new Button("Register Patients"); // registerPatients.setWidth("100%"); registerPatients.setStyleName(ValoTheme.BUTTON_FRIENDLY); registerPatients.setVisible(false); registerPatients.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { callPatientRegistration(); } }); buttonLayoutSection = new VerticalLayout(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(true, false, true, false)); buttonLayout.setHeight(null); buttonLayout.setWidth("100%"); buttonLayoutSection.setWidth("100%"); buttonLayoutSection.addComponent(buttonLayout); buttonLayout.addComponent(registerPatients); return buttonLayoutSection; }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.AddPatientView.java
License:Open Source License
/** * initializes the hla typing registration layout * /*w ww . j a v a 2 s . co m*/ * @return */ void hlaTypingLayout() { hlaLayout.removeAllComponents(); hlaLayout.setWidth("100%"); hlaLayout.setVisible(false); hlaLayout.setMargin(new MarginInfo(true, false, false, false)); hlaLayout.setHeight(null); hlaLayout.setSpacing(true); hlaInfo = new CustomVisibilityComponent(new Label("HLA Typing")); ((Label) hlaInfo.getInnerComponent()).setHeight("24px"); Component hlaContext = Utils.questionize(hlaInfo, "Register available HLA typing for this patient (one allele per line)", "HLA Typing"); hlaLayout.addComponent(hlaContext); HorizontalLayout hlalayout = new HorizontalLayout(); VerticalLayout hlaLayout1 = new VerticalLayout(); hlaLayout1.addComponent(registerHLAI); hlaLayout1.addComponent(hlaItypes); VerticalLayout hlaLayout2 = new VerticalLayout(); hlaLayout2.addComponent(registerHLAII); hlaLayout2.addComponent(hlaIItypes); hlalayout.addComponent(hlaLayout1); hlalayout.addComponent(hlaLayout2); hlalayout.setSpacing(true); typingMethod.addItems(datahandler.getOpenBisClient().getVocabCodesForVocab("Q_HLA_TYPING_METHODS")); hlaLayout.addComponent(typingMethod); hlaLayout.addComponent(hlalayout); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view.//from ww w . j a v a2s . c om */ private void buildLayout() { this.vert.removeAllComponents(); this.vert.setSizeFull(); vert.setResponsive(true); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); tableSection.setResponsive(true); tableSectionContent.setResponsive(true); // tableSectionContent.setCaption("Datasets"); // tableSectionContent.setIcon(FontAwesome.FLASK); // tableSection.addComponent(new Label(String.format("This project contains %s dataset(s).", // numberOfDatasets))); tableSectionContent.setMargin(new MarginInfo(true, false, true, false)); tableSection.addComponent(headerLabel); tableSectionContent.addComponent(this.table); vert.setMargin(new MarginInfo(false, true, false, false)); tableSection.setMargin(new MarginInfo(true, false, false, true)); // tableSectionContent.setMargin(true); // tableSection.setMargin(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(tableSection); table.setSizeFull(); tableSection.setSizeFull(); tableSectionContent.setSizeFull(); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, true, true)); buttonLayout.setHeight(null); // buttonLayout.setWidth("100%"); buttonLayout.setSpacing(true); buttonLayout.setResponsive(true); // final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>" + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>" + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>" + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>" + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>" + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-party freeware. </p>" + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>" + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> " + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>"; export.setIcon(FontAwesome.DOWNLOAD); PopupView tooltip = new PopupView(new helpers.ToolTip(content)); tooltip.setHeight("44px"); HorizontalLayout help = new HorizontalLayout(); help.setSizeFull(); HorizontalLayout helpContent = new HorizontalLayout(); // helpContent.setSizeFull(); help.setMargin(new MarginInfo(false, false, false, true)); Label helpText = new Label("Attention: Click here before Download!"); helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML)); helpContent.addComponent(helpText); helpContent.addComponent(tooltip); helpContent.setSpacing(true); help.addComponent(helpContent); help.setComponentAlignment(helpContent, Alignment.TOP_CENTER); buttonLayout.addComponent(export); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); // buttonLayout.addComponent(visualize); buttonLayout.addComponent(this.download); /** * prepare download. */ download.setEnabled(false); download.setResource(new ExternalResource("javascript:")); // visualize.setEnabled(false); for (final Object itemId : this.table.getItemIds()) { setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue()); } this.table.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick() & !((boolean) table.getItem(event.getItemId()).getItemProperty("isDirectory").getValue())) { String datasetCode = (String) table.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) table.getItem(event.getItemId()).getItemProperty("File Name") .getValue(); URL url; try { Resource res = null; Object parent = table.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) table.getItem(parent) .getItemProperty("File Name").getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.setSizeFull(); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".png")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); // streamres.setMIMEType("application/png"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/xml"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".alleles")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".tsv")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".GSvar")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".log")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; visualize = true; } if (visualize) { // LOGGER.debug("Is resource null?: " + String.valueOf(res == null)); BrowserFrame frame = new BrowserFrame("", res); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setHeight("75%"); subWindow.setWidth("75%"); subWindow.setResizable(false); frame.setSizeFull(); frame.setHeight("100%"); // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } } }); this.vert.addComponent(buttonLayout); this.vert.addComponent(help); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetView.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view./*from w w w .j a va2 s . co m*/ */ private void buildLayout() { this.vert.removeAllComponents(); int browserWidth = UI.getCurrent().getPage().getBrowserWindowWidth(); int browserHeight = UI.getCurrent().getPage().getBrowserWindowHeight(); this.vert.setWidth("100%"); this.setWidth(String.format("%spx", (browserWidth * 0.6))); // this.setHeight(String.format("%spx", (browserHeight * 0.8))); VerticalLayout statistics = new VerticalLayout(); HorizontalLayout statContent = new HorizontalLayout(); statContent.setCaption("Statistics"); statContent.setIcon(FontAwesome.BAR_CHART_O); statContent.addComponent(new Label(String.format("%s registered dataset(s).", numberOfDatasets))); statContent.setMargin(true); statContent.setSpacing(true); statistics.addComponent(statContent); statistics.setMargin(true); this.vert.addComponent(statistics); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); tableSectionContent.setCaption("Registered Datasets"); tableSectionContent.setIcon(FontAwesome.FLASK); tableSectionContent.addComponent(this.table); tableSectionContent.setMargin(true); tableSection.setMargin(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(tableSection); table.setWidth("100%"); tableSection.setWidth("100%"); tableSectionContent.setWidth("100%"); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setHeight(null); buttonLayout.setWidth("100%"); buttonLayout.setSpacing(false); final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION); buttonLayout.addComponent(this.download); buttonLayout.addComponent(visualize); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); /** * prepare download. */ download.setResource(new ExternalResource("javascript:")); download.setEnabled(false); visualize.setEnabled(false); for (final Object itemId : this.table.getItemIds()) { setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue()); } /* * Update the visualize button. It is only enabled, if the files can be visualized. */ this.table.addValueChangeListener(new ValueChangeListener() { /** * */ private static final long serialVersionUID = -4875903343717437913L; /** * check for what selection can be visualized. If so, enable the button. TODO change to * checked. */ @Override public void valueChange(ValueChangeEvent event) { // Nothing selected or more than one selected. Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue(); if (selectedValues == null || selectedValues.size() == 0 || selectedValues.size() > 1) { visualize.setEnabled(false); return; } // if one selected check whether its dataset type is either fastqc or qcml. // For now we only visulize these two file types. Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); String fileName = (String) table.getItem(next).getItemProperty("File Name").getValue(); // TODO: No hardcoding!! // if (datasetType.equals("FASTQC") || datasetType.equals("QCML") || // datasetType.equals("BAM") // || datasetType.equals("VCF")) { if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && (fileName.endsWith(".html") || fileName.endsWith(".qcML"))) { visualize.setEnabled(true); } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS") && (fileName.endsWith(".err") || fileName.endsWith(".out"))) { visualize.setEnabled(true); } else { visualize.setEnabled(false); } } }); // TODO Workflow Views should get those data and be happy /* * Send message that in datasetview the following was selected. WorkflowViews get those messages * and save them, if it is valid information for them. */ this.table.addValueChangeListener(new ValueChangeListener() { /** * */ private static final long serialVersionUID = -3554627008191389648L; @Override public void valueChange(ValueChangeEvent event) { // Nothing selected or more than one selected. Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("DataSetView"); if (selectedValues != null && selectedValues.size() == 1) { Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); message.add(datasetType); String project = (String) table.getItem(next).getItemProperty("Project").getValue(); String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1]; message.add(project); message.add((String) table.getItem(next).getItemProperty("Sample").getValue()); // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue()); message.add((String) table.getItem(next).getItemProperty("dl_link").getValue()); message.add((String) table.getItem(next).getItemProperty("File Name").getValue()); message.add(space); // state.notifyObservers(message); } else { message.add("null"); } // TODO // state.notifyObservers(message); } }); // TODO get the GV to work here. Together with reverse proxy // Assumes that table Value Change listner is enabling or disabling the button if preconditions // are not fullfilled visualize.addClickListener(new ClickListener() { /** * */ private static final long serialVersionUID = 9015273307461506369L; @Override public void buttonClick(ClickEvent event) { Set<Object> selectedValues = (Set<Object>) table.getValue(); Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetCode = (String) table.getItem(next).getItemProperty("CODE").getValue(); String datasetFileName = (String) table.getItem(next).getItemProperty("File Name").getValue(); URL url; try { Object parent = table.getParent(next); if (parent != null) { String parentDatasetFileName = (String) table.getItem(parent).getItemProperty("File Name") .getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window( "QC of Sample: " + (String) table.getItem(next).getItemProperty("Sample").getValue()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); // Put some components in it Resource res = null; String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); final RequestHandler rh = new ProxyForGenomeViewerRestApi(); boolean rhAttached = false; if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/xml"); res = streamres; } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS") && (datasetFileName.endsWith(".err") || datasetFileName.endsWith(".out"))) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; } else if (datasetType.equals("FASTQC")) { res = new ExternalResource(url); } else if (datasetType.equals("BAM") || datasetType.equals("VCF")) { String filePath = (String) table.getItem(next).getItemProperty("dl_link").getValue(); filePath = String.format("/store%s", filePath.split("store")[1]); String fileId = (String) table.getItem(next).getItemProperty("File Name").getValue(); // fileId = "control.1kg.panel.samples.vcf.gz"; // UI.getCurrent().getSession().addRequestHandler(rh); rhAttached = true; ThemeDisplay themedisplay = (ThemeDisplay) VaadinService.getCurrentRequest() .getAttribute(WebKeys.THEME_DISPLAY); String hostTmp = "http://localhost:7778/vizrest/rest";// "http://localhost:8080/web/guest/mainportlet?p_p_id=QbicmainportletApplicationPortlet_WAR_QBiCMainPortlet_INSTANCE_5pPd5JQ8uGOt&p_p_lifecycle=2&p_p_state=normal&p_p_mode=view&p_p_cacheability=cacheLevelPage&p_p_col_id=column-1&p_p_col_count=1"; // hostTmp += // "&qbicsession=" + UI.getCurrent().getSession().getAttribute("gv-restapi-session") // + "&someblabla="; // String hostTmp = themedisplay.getURLPortal() + // UI.getCurrent().getPage().getLocation().getPath() + "?qbicsession=" + // UI.getCurrent().getSession().getAttribute("gv-restapi-session") + "&someblabla=" ; // String host = Base64.encode(hostTmp.getBytes()); String title = (String) table.getItem(next).getItemProperty("Sample").getValue(); // res = // new ExternalResource( // String // .format( // "http://localhost:7778/genomeviewer/?host=%s&title=%s&fileid=%s&featuretype=alignments&filepath=%s&removeZeroGenotypes=false", // host, title, fileId, filePath)); } BrowserFrame frame = new BrowserFrame("", res); if (rhAttached) { frame.addDetachListener(new DetachListener() { /** * */ private static final long serialVersionUID = 1534523447730906543L; @Override public void detach(DetachEvent event) { UI.getCurrent().getSession().removeRequestHandler(rh); } }); } frame.setSizeFull(); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeFull(); frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.8), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } }); this.vert.addComponent(buttonLayout); }