List of usage examples for com.vaadin.ui BrowserFrame setHeight
@Override
public void setHeight(float height, Unit unit)
From source file:cb_server.LogInWindow.java
License:Open Source License
private LogInWindow() { super("Get API Key"); // Set window caption this.setWidth(50, Unit.PERCENTAGE); this.setHeight(80, Unit.PERCENTAGE); center();/*from ww w . j a v a 2s. co m*/ URL url; try { String oAuthUrl = CB_Api.getGcAuthUrl(); url = new URL(oAuthUrl); ExternalResource extRes = new ExternalResource(url); extRes.getURL(); BrowserFrame browser = new BrowserFrame("", extRes); browser.setWidth(100, Unit.PERCENTAGE); browser.setHeight(100, Unit.PERCENTAGE); content = new VerticalLayout(); content.setWidth(100, Unit.PERCENTAGE); content.setHeight(100, Unit.PERCENTAGE); setContent(content); // browser.addListener(eventType, target, method); content.addComponent(browser); } catch (MalformedURLException e) { e.printStackTrace(); } }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetView.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view.// w ww. ja v a2 s . c om */ private void buildLayout() { this.vert.removeAllComponents(); int browserWidth = UI.getCurrent().getPage().getBrowserWindowWidth(); int browserHeight = UI.getCurrent().getPage().getBrowserWindowHeight(); this.vert.setWidth("100%"); this.setWidth(String.format("%spx", (browserWidth * 0.6))); // this.setHeight(String.format("%spx", (browserHeight * 0.8))); VerticalLayout statistics = new VerticalLayout(); HorizontalLayout statContent = new HorizontalLayout(); statContent.setCaption("Statistics"); statContent.setIcon(FontAwesome.BAR_CHART_O); statContent.addComponent(new Label(String.format("%s registered dataset(s).", numberOfDatasets))); statContent.setMargin(true); statContent.setSpacing(true); statistics.addComponent(statContent); statistics.setMargin(true); this.vert.addComponent(statistics); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); tableSectionContent.setCaption("Registered Datasets"); tableSectionContent.setIcon(FontAwesome.FLASK); tableSectionContent.addComponent(this.table); tableSectionContent.setMargin(true); tableSection.setMargin(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(tableSection); table.setWidth("100%"); tableSection.setWidth("100%"); tableSectionContent.setWidth("100%"); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setHeight(null); buttonLayout.setWidth("100%"); buttonLayout.setSpacing(false); final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION); buttonLayout.addComponent(this.download); buttonLayout.addComponent(visualize); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); /** * prepare download. */ download.setResource(new ExternalResource("javascript:")); download.setEnabled(false); visualize.setEnabled(false); for (final Object itemId : this.table.getItemIds()) { setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue()); } /* * Update the visualize button. It is only enabled, if the files can be visualized. */ this.table.addValueChangeListener(new ValueChangeListener() { /** * */ private static final long serialVersionUID = -4875903343717437913L; /** * check for what selection can be visualized. If so, enable the button. TODO change to * checked. */ @Override public void valueChange(ValueChangeEvent event) { // Nothing selected or more than one selected. Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue(); if (selectedValues == null || selectedValues.size() == 0 || selectedValues.size() > 1) { visualize.setEnabled(false); return; } // if one selected check whether its dataset type is either fastqc or qcml. // For now we only visulize these two file types. Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); String fileName = (String) table.getItem(next).getItemProperty("File Name").getValue(); // TODO: No hardcoding!! // if (datasetType.equals("FASTQC") || datasetType.equals("QCML") || // datasetType.equals("BAM") // || datasetType.equals("VCF")) { if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && (fileName.endsWith(".html") || fileName.endsWith(".qcML"))) { visualize.setEnabled(true); } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS") && (fileName.endsWith(".err") || fileName.endsWith(".out"))) { visualize.setEnabled(true); } else { visualize.setEnabled(false); } } }); // TODO Workflow Views should get those data and be happy /* * Send message that in datasetview the following was selected. WorkflowViews get those messages * and save them, if it is valid information for them. */ this.table.addValueChangeListener(new ValueChangeListener() { /** * */ private static final long serialVersionUID = -3554627008191389648L; @Override public void valueChange(ValueChangeEvent event) { // Nothing selected or more than one selected. Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("DataSetView"); if (selectedValues != null && selectedValues.size() == 1) { Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); message.add(datasetType); String project = (String) table.getItem(next).getItemProperty("Project").getValue(); String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1]; message.add(project); message.add((String) table.getItem(next).getItemProperty("Sample").getValue()); // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue()); message.add((String) table.getItem(next).getItemProperty("dl_link").getValue()); message.add((String) table.getItem(next).getItemProperty("File Name").getValue()); message.add(space); // state.notifyObservers(message); } else { message.add("null"); } // TODO // state.notifyObservers(message); } }); // TODO get the GV to work here. Together with reverse proxy // Assumes that table Value Change listner is enabling or disabling the button if preconditions // are not fullfilled visualize.addClickListener(new ClickListener() { /** * */ private static final long serialVersionUID = 9015273307461506369L; @Override public void buttonClick(ClickEvent event) { Set<Object> selectedValues = (Set<Object>) table.getValue(); Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetCode = (String) table.getItem(next).getItemProperty("CODE").getValue(); String datasetFileName = (String) table.getItem(next).getItemProperty("File Name").getValue(); URL url; try { Object parent = table.getParent(next); if (parent != null) { String parentDatasetFileName = (String) table.getItem(parent).getItemProperty("File Name") .getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window( "QC of Sample: " + (String) table.getItem(next).getItemProperty("Sample").getValue()); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); // Put some components in it Resource res = null; String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue(); final RequestHandler rh = new ProxyForGenomeViewerRestApi(); boolean rhAttached = false; if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/xml"); res = streamres; } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS") && (datasetFileName.endsWith(".err") || datasetFileName.endsWith(".out"))) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; } else if (datasetType.equals("FASTQC")) { res = new ExternalResource(url); } else if (datasetType.equals("BAM") || datasetType.equals("VCF")) { String filePath = (String) table.getItem(next).getItemProperty("dl_link").getValue(); filePath = String.format("/store%s", filePath.split("store")[1]); String fileId = (String) table.getItem(next).getItemProperty("File Name").getValue(); // fileId = "control.1kg.panel.samples.vcf.gz"; // UI.getCurrent().getSession().addRequestHandler(rh); rhAttached = true; ThemeDisplay themedisplay = (ThemeDisplay) VaadinService.getCurrentRequest() .getAttribute(WebKeys.THEME_DISPLAY); String hostTmp = "http://localhost:7778/vizrest/rest";// "http://localhost:8080/web/guest/mainportlet?p_p_id=QbicmainportletApplicationPortlet_WAR_QBiCMainPortlet_INSTANCE_5pPd5JQ8uGOt&p_p_lifecycle=2&p_p_state=normal&p_p_mode=view&p_p_cacheability=cacheLevelPage&p_p_col_id=column-1&p_p_col_count=1"; // hostTmp += // "&qbicsession=" + UI.getCurrent().getSession().getAttribute("gv-restapi-session") // + "&someblabla="; // String hostTmp = themedisplay.getURLPortal() + // UI.getCurrent().getPage().getLocation().getPath() + "?qbicsession=" + // UI.getCurrent().getSession().getAttribute("gv-restapi-session") + "&someblabla=" ; // String host = Base64.encode(hostTmp.getBytes()); String title = (String) table.getItem(next).getItemProperty("Sample").getValue(); // res = // new ExternalResource( // String // .format( // "http://localhost:7778/genomeviewer/?host=%s&title=%s&fileid=%s&featuretype=alignments&filepath=%s&removeZeroGenotypes=false", // host, title, fileId, filePath)); } BrowserFrame frame = new BrowserFrame("", res); if (rhAttached) { frame.addDetachListener(new DetachListener() { /** * */ private static final long serialVersionUID = 1534523447730906543L; @Override public void detach(DetachEvent event) { UI.getCurrent().getSession().removeRequestHandler(rh); } }); } frame.setSizeFull(); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeFull(); frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.8), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } }); this.vert.addComponent(buttonLayout); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjInformationComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view./*from w w w.j a v a 2 s .c o m*/ */ private void buildLayout(Boolean dataAvailable, String projectType) { vert.removeAllComponents(); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); VerticalLayout projDescription = new VerticalLayout(); VerticalLayout projDescriptionContent = new VerticalLayout(); tableSectionContent.setMargin(new MarginInfo(false, false, false, false)); projDescriptionContent.setMargin(new MarginInfo(false, false, false, false)); descHorz.addComponent(descContent); descHorz.addComponent(descEdit); descHorz.setComponentAlignment(descEdit, Alignment.TOP_RIGHT); descHorz.setExpandRatio(descContent, 0.9f); descHorz.setExpandRatio(descEdit, 0.1f); projDescriptionContent.addComponent(descHorz); projDescriptionContent.addComponent(peopleInCharge); // descContent.setWidth("80%"); projDescriptionContent.addComponent(descriptionPanel); projDescriptionContent.addComponent(statusPanel); // longDescription.setWidth("80%"); // projDescriptionContent.addComponent(experimentLabel); // projDescriptionContent.addComponent(statusContent); // statusContent.setSpacing(true); // statusContent.setMargin(new MarginInfo(false, false, false, true)); if (projectType.equals("patient")) { String patientInfo = ""; Boolean available = false; SearchCriteria sampleSc = new SearchCriteria(); sampleSc.addMatchClause( MatchClause.createAttributeMatch(MatchClauseAttribute.TYPE, "Q_BIOLOGICAL_ENTITY")); SearchCriteria projectSc = new SearchCriteria(); projectSc.addMatchClause( MatchClause.createAttributeMatch(MatchClauseAttribute.PROJECT, projectBean.getCode())); sampleSc.addSubCriteria(SearchSubCriteria.createExperimentCriteria(projectSc)); SearchCriteria experimentSc = new SearchCriteria(); experimentSc.addMatchClause(MatchClause.createAttributeMatch(MatchClauseAttribute.TYPE, model.ExperimentType.Q_EXPERIMENTAL_DESIGN.name())); sampleSc.addSubCriteria(SearchSubCriteria.createExperimentCriteria(experimentSc)); List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample> samples = datahandler.getOpenBisClient() .getFacade().searchForSamples(sampleSc); for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample sample : samples) { if (sample.getProperties().get("Q_ADDITIONAL_INFO") != null) { available = true; String[] splitted = sample.getProperties().get("Q_ADDITIONAL_INFO").split(";"); for (String s : splitted) { String[] splitted2 = s.split(":"); patientInfo += String.format("<p><u>%s</u>: %s </p> ", splitted2[0], splitted2[1]); } } } if (available) { patientInformation.setValue(patientInfo); } else { patientInformation.setValue("No patient information provided."); } updateHLALayout(); projDescriptionContent.addComponent(patientInformation); projDescriptionContent.addComponent(hlaTypeLabel); // Vaccine Designer /* * Button vaccineDesigner = new Button("Vaccine Designer"); * vaccineDesigner.setStyleName(ValoTheme.BUTTON_PRIMARY); * vaccineDesigner.setIcon(FontAwesome.CUBES); * * vaccineDesigner.addClickListener(new ClickListener() { * * @Override public void buttonClick(ClickEvent event) { * * ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); StringBuilder * sb = new StringBuilder("type="); sb.append("vaccinedesign"); sb.append("&"); * sb.append("id="); sb.append(projectBean.getId()); message.add(sb.toString()); * message.add(VaccineDesignerView.navigateToLabel); state.notifyObservers(message); */ // UI.getCurrent().getNavigator() // .navigateTo(String.format(VaccineDesignerView.navigateToLabel)); // } // }); // projDescriptionContent.addComponent(vaccineDesigner); } projDescriptionContent.addComponent(tsvDownloadContent); projDescription.addComponent(projDescriptionContent); projDescriptionContent.setSpacing(true); projDescription.setMargin(new MarginInfo(false, false, true, true)); projDescription.setWidth("100%"); projDescription.setSpacing(true); // descriptionLabel.setWidth("100%"); // tableSection.addComponent(descriptionLabel); tableSectionContent.addComponent(this.datasetTable); projDescriptionContent.addComponent(contact); tableSection.setMargin(new MarginInfo(true, false, false, true)); tableSection.setSpacing(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(projDescription); datasetTable.setWidth("100%"); tableSection.setWidth("100%"); tableSectionContent.setWidth("100%"); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, true, false)); buttonLayout.setHeight(null); // buttonLayout.setWidth("100%"); buttonLayout.setSpacing(true); this.download.setEnabled(false); buttonLayout.setSpacing(true); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); buttonLayout.addComponent(this.download); /** * prepare download. */ download.setResource(new ExternalResource("javascript:")); download.setEnabled(false); for (final Object itemId : this.datasetTable.getItemIds()) { setCheckedBox(itemId, (String) this.datasetTable.getItem(itemId).getItemProperty("CODE").getValue()); } /* * Send message that in datasetview the following was selected. WorkflowViews get those messages * and save them, if it is valid information for them. */ this.datasetTable.addValueChangeListener(new ValueChangeListener() { /** * */ private static final long serialVersionUID = -3554627008191389648L; @Override public void valueChange(ValueChangeEvent event) { // Nothing selected or more than one selected. Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue(); State state = (State) UI.getCurrent().getSession().getAttribute("state"); ArrayList<String> message = new ArrayList<String>(); message.add("DataSetView"); if (selectedValues != null && selectedValues.size() == 1) { Iterator<Object> iterator = selectedValues.iterator(); Object next = iterator.next(); String datasetType = (String) datasetTable.getItem(next).getItemProperty("Dataset Type") .getValue(); message.add(datasetType); String project = (String) datasetTable.getItem(next).getItemProperty("Project").getValue(); String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1]; message.add(project); message.add((String) datasetTable.getItem(next).getItemProperty("Sample").getValue()); // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue()); message.add((String) datasetTable.getItem(next).getItemProperty("dl_link").getValue()); message.add((String) datasetTable.getItem(next).getItemProperty("File Name").getValue()); message.add(space); // state.notifyObservers(message); } else { message.add("null"); } // TODO // state.notifyObservers(message); } }); this.datasetTable.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick()) { String datasetCode = (String) datasetTable.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) datasetTable.getItem(event.getItemId()) .getItemProperty("File Name").getValue(); URL url; try { Resource res = null; Object parent = datasetTable.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) datasetTable.getItem(parent) .getItemProperty("File Name").getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (visualize) { LOGGER.debug("Is resource null?: " + String.valueOf(res == null)); BrowserFrame frame = new BrowserFrame("", res); frame.setSizeFull(); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeFull(); frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } } }); // this.vert.addComponent(buttonLayout); if (dataAvailable) { this.vert.addComponent(tableSection); tableSection.addComponent(buttonLayout); projDescription.setMargin(new MarginInfo(false, false, false, true)); } }