Example usage for com.vaadin.ui BrowserFrame BrowserFrame

List of usage examples for com.vaadin.ui BrowserFrame BrowserFrame

Introduction

In this page you can find the example usage for com.vaadin.ui BrowserFrame BrowserFrame.

Prototype

public BrowserFrame(String caption, Resource source) 

Source Link

Document

Creates a new browser frame with the given caption and content.

Usage

From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetView.java

License:Open Source License

/**
 * Precondition: {DatasetView#table} has to be initialized. e.g. with
 * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the
 * Layout of this view./*from w w  w . ja v  a2  s .c  om*/
 */
private void buildLayout() {
    this.vert.removeAllComponents();

    int browserWidth = UI.getCurrent().getPage().getBrowserWindowWidth();
    int browserHeight = UI.getCurrent().getPage().getBrowserWindowHeight();

    this.vert.setWidth("100%");
    this.setWidth(String.format("%spx", (browserWidth * 0.6)));
    // this.setHeight(String.format("%spx", (browserHeight * 0.8)));

    VerticalLayout statistics = new VerticalLayout();
    HorizontalLayout statContent = new HorizontalLayout();
    statContent.setCaption("Statistics");
    statContent.setIcon(FontAwesome.BAR_CHART_O);
    statContent.addComponent(new Label(String.format("%s registered dataset(s).", numberOfDatasets)));
    statContent.setMargin(true);
    statContent.setSpacing(true);
    statistics.addComponent(statContent);
    statistics.setMargin(true);
    this.vert.addComponent(statistics);

    // Table (containing datasets) section
    VerticalLayout tableSection = new VerticalLayout();
    HorizontalLayout tableSectionContent = new HorizontalLayout();

    tableSectionContent.setCaption("Registered Datasets");
    tableSectionContent.setIcon(FontAwesome.FLASK);
    tableSectionContent.addComponent(this.table);

    tableSectionContent.setMargin(true);
    tableSection.setMargin(true);

    tableSection.addComponent(tableSectionContent);
    this.vert.addComponent(tableSection);

    table.setWidth("100%");
    tableSection.setWidth("100%");
    tableSectionContent.setWidth("100%");

    // this.table.setSizeFull();

    HorizontalLayout buttonLayout = new HorizontalLayout();
    buttonLayout.setHeight(null);
    buttonLayout.setWidth("100%");
    buttonLayout.setSpacing(false);

    final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION);
    buttonLayout.addComponent(this.download);
    buttonLayout.addComponent(visualize);

    Button checkAll = new Button("Select all datasets");
    checkAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : table.getItemIds()) {
                ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true);
            }
        }
    });

    Button uncheckAll = new Button("Unselect all datasets");
    uncheckAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : table.getItemIds()) {
                ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false);
            }
        }
    });

    buttonLayout.addComponent(checkAll);
    buttonLayout.addComponent(uncheckAll);
    /**
     * prepare download.
     */
    download.setResource(new ExternalResource("javascript:"));
    download.setEnabled(false);
    visualize.setEnabled(false);

    for (final Object itemId : this.table.getItemIds()) {
        setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue());
    }

    /*
     * Update the visualize button. It is only enabled, if the files can be visualized.
     */
    this.table.addValueChangeListener(new ValueChangeListener() {
        /**
         * 
         */
        private static final long serialVersionUID = -4875903343717437913L;

        /**
         * check for what selection can be visualized. If so, enable the button. TODO change to
         * checked.
         */
        @Override
        public void valueChange(ValueChangeEvent event) {
            // Nothing selected or more than one selected.
            Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue();
            if (selectedValues == null || selectedValues.size() == 0 || selectedValues.size() > 1) {
                visualize.setEnabled(false);
                return;
            }
            // if one selected check whether its dataset type is either fastqc or qcml.
            // For now we only visulize these two file types.
            Iterator<Object> iterator = selectedValues.iterator();
            Object next = iterator.next();
            String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
            String fileName = (String) table.getItem(next).getItemProperty("File Name").getValue();
            // TODO: No hardcoding!!
            // if (datasetType.equals("FASTQC") || datasetType.equals("QCML") ||
            // datasetType.equals("BAM")
            // || datasetType.equals("VCF")) {
            if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS")
                    && (fileName.endsWith(".html") || fileName.endsWith(".qcML"))) {
                visualize.setEnabled(true);
            } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS")
                    && (fileName.endsWith(".err") || fileName.endsWith(".out"))) {
                visualize.setEnabled(true);
            } else {
                visualize.setEnabled(false);
            }
        }
    });

    // TODO Workflow Views should get those data and be happy
    /*
     * Send message that in datasetview the following was selected. WorkflowViews get those messages
     * and save them, if it is valid information for them.
     */
    this.table.addValueChangeListener(new ValueChangeListener() {
        /**
         * 
         */
        private static final long serialVersionUID = -3554627008191389648L;

        @Override
        public void valueChange(ValueChangeEvent event) {
            // Nothing selected or more than one selected.
            Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue();
            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("DataSetView");
            if (selectedValues != null && selectedValues.size() == 1) {
                Iterator<Object> iterator = selectedValues.iterator();
                Object next = iterator.next();
                String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
                message.add(datasetType);
                String project = (String) table.getItem(next).getItemProperty("Project").getValue();

                String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1];
                message.add(project);
                message.add((String) table.getItem(next).getItemProperty("Sample").getValue());
                // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue());
                message.add((String) table.getItem(next).getItemProperty("dl_link").getValue());
                message.add((String) table.getItem(next).getItemProperty("File Name").getValue());
                message.add(space);
                // state.notifyObservers(message);
            } else {
                message.add("null");
            } // TODO
              // state.notifyObservers(message);

        }
    });

    // TODO get the GV to work here. Together with reverse proxy
    // Assumes that table Value Change listner is enabling or disabling the button if preconditions
    // are not fullfilled
    visualize.addClickListener(new ClickListener() {
        /**
         * 
         */
        private static final long serialVersionUID = 9015273307461506369L;

        @Override
        public void buttonClick(ClickEvent event) {
            Set<Object> selectedValues = (Set<Object>) table.getValue();
            Iterator<Object> iterator = selectedValues.iterator();
            Object next = iterator.next();
            String datasetCode = (String) table.getItem(next).getItemProperty("CODE").getValue();
            String datasetFileName = (String) table.getItem(next).getItemProperty("File Name").getValue();
            URL url;
            try {
                Object parent = table.getParent(next);
                if (parent != null) {
                    String parentDatasetFileName = (String) table.getItem(parent).getItemProperty("File Name")
                            .getValue();
                    url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode,
                            parentDatasetFileName + "/" + datasetFileName);
                } else {
                    url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName);
                }

                Window subWindow = new Window(
                        "QC of Sample: " + (String) table.getItem(next).getItemProperty("Sample").getValue());
                VerticalLayout subContent = new VerticalLayout();
                subContent.setMargin(true);
                subWindow.setContent(subContent);
                QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                // Put some components in it
                Resource res = null;
                String datasetType = (String) table.getItem(next).getItemProperty("Dataset Type").getValue();
                final RequestHandler rh = new ProxyForGenomeViewerRestApi();
                boolean rhAttached = false;
                if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS") && datasetFileName.endsWith(".qcML")) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("application/xml");
                    res = streamres;
                } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_RESULTS")
                        && datasetFileName.endsWith(".html")) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("text/html");
                    res = streamres;
                } else if (datasetType.equals("Q_WF_MS_QUALITYCONTROL_LOGS")
                        && (datasetFileName.endsWith(".err") || datasetFileName.endsWith(".out"))) {
                    QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                    StreamResource streamres = new StreamResource(re, datasetFileName);
                    streamres.setMIMEType("text/plain");
                    res = streamres;
                } else if (datasetType.equals("FASTQC")) {
                    res = new ExternalResource(url);
                } else if (datasetType.equals("BAM") || datasetType.equals("VCF")) {
                    String filePath = (String) table.getItem(next).getItemProperty("dl_link").getValue();
                    filePath = String.format("/store%s", filePath.split("store")[1]);
                    String fileId = (String) table.getItem(next).getItemProperty("File Name").getValue();
                    // fileId = "control.1kg.panel.samples.vcf.gz";
                    // UI.getCurrent().getSession().addRequestHandler(rh);
                    rhAttached = true;
                    ThemeDisplay themedisplay = (ThemeDisplay) VaadinService.getCurrentRequest()
                            .getAttribute(WebKeys.THEME_DISPLAY);
                    String hostTmp = "http://localhost:7778/vizrest/rest";// "http://localhost:8080/web/guest/mainportlet?p_p_id=QbicmainportletApplicationPortlet_WAR_QBiCMainPortlet_INSTANCE_5pPd5JQ8uGOt&p_p_lifecycle=2&p_p_state=normal&p_p_mode=view&p_p_cacheability=cacheLevelPage&p_p_col_id=column-1&p_p_col_count=1";
                    // hostTmp +=
                    // "&qbicsession=" + UI.getCurrent().getSession().getAttribute("gv-restapi-session")
                    // + "&someblabla=";
                    // String hostTmp = themedisplay.getURLPortal() +
                    // UI.getCurrent().getPage().getLocation().getPath() + "?qbicsession=" +
                    // UI.getCurrent().getSession().getAttribute("gv-restapi-session") + "&someblabla=" ;
                    // String host = Base64.encode(hostTmp.getBytes());
                    String title = (String) table.getItem(next).getItemProperty("Sample").getValue();
                    // res =
                    // new ExternalResource(
                    // String
                    // .format(
                    // "http://localhost:7778/genomeviewer/?host=%s&title=%s&fileid=%s&featuretype=alignments&filepath=%s&removeZeroGenotypes=false",
                    // host, title, fileId, filePath));
                }
                BrowserFrame frame = new BrowserFrame("", res);
                if (rhAttached) {
                    frame.addDetachListener(new DetachListener() {

                        /**
                         * 
                         */
                        private static final long serialVersionUID = 1534523447730906543L;

                        @Override
                        public void detach(DetachEvent event) {
                            UI.getCurrent().getSession().removeRequestHandler(rh);
                        }

                    });
                }

                frame.setSizeFull();
                subContent.addComponent(frame);

                // Center it in the browser window
                subWindow.center();
                subWindow.setModal(true);
                subWindow.setSizeFull();

                frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.8), Unit.PIXELS);
                // Open it in the UI
                ui.addWindow(subWindow);
            } catch (MalformedURLException e) {
                LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s",
                        datasetCode));
                Notification.show(
                        "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data",
                        Notification.Type.ERROR_MESSAGE);
            }
        }
    });

    this.vert.addComponent(buttonLayout);

}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java

License:Open Source License

/**
 * Precondition: {DatasetView#table} has to be initialized. e.g. with
 * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the
 * Layout of this view.//w ww. ja  v  a 2 s . c o  m
 */
private void buildLayout() {
    this.vert.removeAllComponents();
    this.vert.setWidth("100%");

    // Table (containing datasets) section
    VerticalLayout tableSectionDatasets = new VerticalLayout();
    VerticalLayout tableSectionSamples = new VerticalLayout();
    HorizontalLayout tableSectionContent = new HorizontalLayout();
    HorizontalLayout sampletableSectionContent = new HorizontalLayout();

    tableSectionContent.setMargin(new MarginInfo(false, false, false, false));
    sampletableSectionContent.setMargin(new MarginInfo(false, false, false, false));

    // tableSectionContent.setCaption("Datasets");
    // tableSectionContent.setIcon(FontAwesome.FLASK);

    descriptionLabel.setWidth("100%");
    tableSectionDatasets.addComponent(descriptionLabel);

    sampletableSectionContent.addComponent(sampleGrid);
    tableSectionContent.addComponent(this.datasetTable);

    tableSectionDatasets.setMargin(new MarginInfo(true, false, false, true));
    tableSectionDatasets.setSpacing(true);

    tableSectionSamples.setMargin(new MarginInfo(true, false, true, true));
    tableSectionSamples.setSpacing(true);

    tableSectionDatasets.addComponent(tableSectionContent);

    tableSectionSamples.addComponent(sampletableSectionContent);
    tableSectionSamples.addComponent(exportSamples);

    this.vert.addComponent(tableSectionDatasets);

    sampleGrid.setWidth("100%");
    datasetTable.setWidth("100%");
    tableSectionDatasets.setWidth("100%");

    tableSectionSamples.setWidth("100%");
    sampletableSectionContent.setWidth("100%");

    tableSectionContent.setWidth("100%");

    HorizontalLayout buttonLayout = new HorizontalLayout();
    buttonLayout.setMargin(new MarginInfo(false, false, false, true));
    buttonLayout.setHeight(null);
    buttonLayout.setSpacing(true);

    this.download.setEnabled(false);
    buttonLayout.setSpacing(true);

    Button checkAll = new Button("Select all datasets");
    checkAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : datasetTable.getItemIds()) {
                ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(true);
            }
        }
    });

    Button uncheckAll = new Button("Unselect all datasets");
    uncheckAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : datasetTable.getItemIds()) {
                ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(false);
            }
        }
    });

    buttonLayout.addComponent(exportData);
    buttonLayout.addComponent(checkAll);
    buttonLayout.addComponent(uncheckAll);
    // buttonLayout.addComponent(visualize);
    buttonLayout.addComponent(this.download);

    String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>"
            + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>"
            + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>"
            + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>"
            + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>"
            + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-part freeware. </p>"
            + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>"
            + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> "
            + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>";

    PopupView tooltip = new PopupView(new helpers.ToolTip(content));
    tooltip.setHeight("44px");

    HorizontalLayout help = new HorizontalLayout();
    help.setSizeFull();
    HorizontalLayout helpContent = new HorizontalLayout();
    // helpContent.setSizeFull();

    help.setMargin(new MarginInfo(false, false, false, true));
    Label helpText = new Label("Attention: Click here before Download!");
    helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML));
    helpContent.addComponent(helpText);
    helpContent.addComponent(tooltip);
    helpContent.setSpacing(true);

    help.addComponent(helpContent);
    help.setComponentAlignment(helpContent, Alignment.TOP_CENTER);

    /**
     * prepare download.
     */
    download.setResource(new ExternalResource("javascript:"));
    download.setEnabled(false);

    for (final Object itemId : this.datasetTable.getItemIds()) {
        setCheckedBox(itemId, (String) this.datasetTable.getItem(itemId).getItemProperty("CODE").getValue());
    }

    this.datasetTable.addItemClickListener(new ItemClickListener() {
        @Override
        public void itemClick(ItemClickEvent event) {
            if (!event.isDoubleClick() & !((boolean) datasetTable.getItem(event.getItemId())
                    .getItemProperty("isDirectory").getValue())) {
                String datasetCode = (String) datasetTable.getItem(event.getItemId()).getItemProperty("CODE")
                        .getValue();
                String datasetFileName = (String) datasetTable.getItem(event.getItemId())
                        .getItemProperty("File Name").getValue();
                URL url = null;
                try {
                    Resource res = null;
                    Object parent = datasetTable.getParent(event.getItemId());
                    if (parent != null) {

                        String parentDatasetFileName = (String) datasetTable.getItem(parent)
                                .getItemProperty("File Name").getValue();
                        try {
                            url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode,
                                    parentDatasetFileName + "/" + URLEncoder.encode(datasetFileName, "UTF-8"));
                        } catch (UnsupportedEncodingException e) {
                            // TODO Auto-generated catch block
                            e.printStackTrace();
                        }
                    } else {
                        try {
                            url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode,
                                    URLEncoder.encode(datasetFileName, "UTF-8"));
                        } catch (UnsupportedEncodingException e) {
                            // TODO Auto-generated catch block
                            e.printStackTrace();
                        }
                    }

                    Window subWindow = new Window();
                    VerticalLayout subContent = new VerticalLayout();
                    subContent.setMargin(true);
                    subContent.setSizeFull();
                    subWindow.setContent(subContent);
                    QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                    Boolean visualize = false;

                    if (datasetFileName.endsWith(".pdf")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("application/pdf");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".png")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("application/png");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".qcML")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/xml");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".alleles")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/plain");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".tsv")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/plain");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".log")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/plain");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".html")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/html");
                        res = streamres;
                        visualize = true;
                    }

                    if (datasetFileName.endsWith(".GSvar")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("text/plain");
                        res = streamres;
                        visualize = true;
                    }

                    if (visualize) {
                        BrowserFrame frame = new BrowserFrame("", res);

                        frame.setSizeFull();
                        subContent.addComponent(frame);

                        // Center it in the browser window
                        subWindow.center();
                        subWindow.setModal(true);
                        subWindow.setSizeUndefined();
                        subWindow.setHeight("75%");
                        subWindow.setWidth("75%");
                        subWindow.setResizable(false);

                        frame.setSizeFull();
                        frame.setHeight("100%");
                        // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS);

                        // Open it in the UI
                        ui.addWindow(subWindow);
                    }

                } catch (MalformedURLException e) {
                    LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s",
                            datasetCode));
                    helpers.Utils.Notification("No file attached.",
                            "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data",
                            "error");

                    // Notification
                    // .show(
                    // "Given dataset has no file attached to it!! Please Contact your project manager. Or
                    // check whether it already has some data",
                    // Notification.Type.ERROR_MESSAGE);
                }
            }
        }
    });
    this.vert.addComponent(help);
    this.vert.addComponent(buttonLayout);
    this.vert.addComponent(tableSectionSamples);

}

From source file:de.uni_tuebingen.qbic.qbicmainportlet.ProjInformationComponent.java

License:Open Source License

/**
 * Precondition: {DatasetView#table} has to be initialized. e.g. with
 * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the
 * Layout of this view./*from  ww w . j a  v  a  2 s  .c  o m*/
 */
private void buildLayout(Boolean dataAvailable, String projectType) {
    vert.removeAllComponents();

    // Table (containing datasets) section
    VerticalLayout tableSection = new VerticalLayout();
    HorizontalLayout tableSectionContent = new HorizontalLayout();

    VerticalLayout projDescription = new VerticalLayout();
    VerticalLayout projDescriptionContent = new VerticalLayout();

    tableSectionContent.setMargin(new MarginInfo(false, false, false, false));
    projDescriptionContent.setMargin(new MarginInfo(false, false, false, false));

    descHorz.addComponent(descContent);
    descHorz.addComponent(descEdit);
    descHorz.setComponentAlignment(descEdit, Alignment.TOP_RIGHT);
    descHorz.setExpandRatio(descContent, 0.9f);
    descHorz.setExpandRatio(descEdit, 0.1f);

    projDescriptionContent.addComponent(descHorz);
    projDescriptionContent.addComponent(peopleInCharge);
    // descContent.setWidth("80%");
    projDescriptionContent.addComponent(descriptionPanel);
    projDescriptionContent.addComponent(statusPanel);
    // longDescription.setWidth("80%");
    // projDescriptionContent.addComponent(experimentLabel);
    // projDescriptionContent.addComponent(statusContent);

    // statusContent.setSpacing(true);
    // statusContent.setMargin(new MarginInfo(false, false, false, true));

    if (projectType.equals("patient")) {
        String patientInfo = "";
        Boolean available = false;

        SearchCriteria sampleSc = new SearchCriteria();
        sampleSc.addMatchClause(
                MatchClause.createAttributeMatch(MatchClauseAttribute.TYPE, "Q_BIOLOGICAL_ENTITY"));
        SearchCriteria projectSc = new SearchCriteria();
        projectSc.addMatchClause(
                MatchClause.createAttributeMatch(MatchClauseAttribute.PROJECT, projectBean.getCode()));
        sampleSc.addSubCriteria(SearchSubCriteria.createExperimentCriteria(projectSc));

        SearchCriteria experimentSc = new SearchCriteria();
        experimentSc.addMatchClause(MatchClause.createAttributeMatch(MatchClauseAttribute.TYPE,
                model.ExperimentType.Q_EXPERIMENTAL_DESIGN.name()));
        sampleSc.addSubCriteria(SearchSubCriteria.createExperimentCriteria(experimentSc));
        List<ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample> samples = datahandler.getOpenBisClient()
                .getFacade().searchForSamples(sampleSc);
        for (ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample sample : samples) {
            if (sample.getProperties().get("Q_ADDITIONAL_INFO") != null) {
                available = true;
                String[] splitted = sample.getProperties().get("Q_ADDITIONAL_INFO").split(";");
                for (String s : splitted) {
                    String[] splitted2 = s.split(":");
                    patientInfo += String.format("<p><u>%s</u>: %s </p> ", splitted2[0], splitted2[1]);
                }
            }
        }

        if (available) {
            patientInformation.setValue(patientInfo);
        } else {
            patientInformation.setValue("No patient information provided.");
        }

        updateHLALayout();
        projDescriptionContent.addComponent(patientInformation);
        projDescriptionContent.addComponent(hlaTypeLabel);

        // Vaccine Designer

        /*
         * Button vaccineDesigner = new Button("Vaccine Designer");
         * vaccineDesigner.setStyleName(ValoTheme.BUTTON_PRIMARY);
         * vaccineDesigner.setIcon(FontAwesome.CUBES);
         * 
         * vaccineDesigner.addClickListener(new ClickListener() {
         * 
         * @Override public void buttonClick(ClickEvent event) {
         * 
         * ArrayList<String> message = new ArrayList<String>(); message.add("clicked"); StringBuilder
         * sb = new StringBuilder("type="); sb.append("vaccinedesign"); sb.append("&");
         * sb.append("id="); sb.append(projectBean.getId()); message.add(sb.toString());
         * message.add(VaccineDesignerView.navigateToLabel); state.notifyObservers(message);
         */
        // UI.getCurrent().getNavigator()
        // .navigateTo(String.format(VaccineDesignerView.navigateToLabel));
        // }
        // });

        // projDescriptionContent.addComponent(vaccineDesigner);

    }

    projDescriptionContent.addComponent(tsvDownloadContent);

    projDescription.addComponent(projDescriptionContent);

    projDescriptionContent.setSpacing(true);
    projDescription.setMargin(new MarginInfo(false, false, true, true));
    projDescription.setWidth("100%");
    projDescription.setSpacing(true);

    // descriptionLabel.setWidth("100%");
    // tableSection.addComponent(descriptionLabel);
    tableSectionContent.addComponent(this.datasetTable);

    projDescriptionContent.addComponent(contact);

    tableSection.setMargin(new MarginInfo(true, false, false, true));
    tableSection.setSpacing(true);

    tableSection.addComponent(tableSectionContent);

    this.vert.addComponent(projDescription);

    datasetTable.setWidth("100%");
    tableSection.setWidth("100%");
    tableSectionContent.setWidth("100%");

    // this.table.setSizeFull();

    HorizontalLayout buttonLayout = new HorizontalLayout();
    buttonLayout.setMargin(new MarginInfo(false, false, true, false));
    buttonLayout.setHeight(null);
    // buttonLayout.setWidth("100%");
    buttonLayout.setSpacing(true);

    this.download.setEnabled(false);
    buttonLayout.setSpacing(true);

    Button checkAll = new Button("Select all datasets");
    checkAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : datasetTable.getItemIds()) {
                ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(true);
            }
        }
    });

    Button uncheckAll = new Button("Unselect all datasets");
    uncheckAll.addClickListener(new ClickListener() {

        @Override
        public void buttonClick(ClickEvent event) {
            for (Object itemId : datasetTable.getItemIds()) {
                ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(false);
            }
        }
    });

    buttonLayout.addComponent(checkAll);
    buttonLayout.addComponent(uncheckAll);

    buttonLayout.addComponent(checkAll);
    buttonLayout.addComponent(uncheckAll);
    buttonLayout.addComponent(this.download);
    /**
     * prepare download.
     */
    download.setResource(new ExternalResource("javascript:"));
    download.setEnabled(false);

    for (final Object itemId : this.datasetTable.getItemIds()) {
        setCheckedBox(itemId, (String) this.datasetTable.getItem(itemId).getItemProperty("CODE").getValue());
    }

    /*
     * Send message that in datasetview the following was selected. WorkflowViews get those messages
     * and save them, if it is valid information for them.
     */
    this.datasetTable.addValueChangeListener(new ValueChangeListener() {
        /**
         * 
         */
        private static final long serialVersionUID = -3554627008191389648L;

        @Override
        public void valueChange(ValueChangeEvent event) {
            // Nothing selected or more than one selected.
            Set<Object> selectedValues = (Set<Object>) event.getProperty().getValue();
            State state = (State) UI.getCurrent().getSession().getAttribute("state");
            ArrayList<String> message = new ArrayList<String>();
            message.add("DataSetView");
            if (selectedValues != null && selectedValues.size() == 1) {
                Iterator<Object> iterator = selectedValues.iterator();
                Object next = iterator.next();
                String datasetType = (String) datasetTable.getItem(next).getItemProperty("Dataset Type")
                        .getValue();
                message.add(datasetType);
                String project = (String) datasetTable.getItem(next).getItemProperty("Project").getValue();

                String space = datahandler.getOpenBisClient().getProjectByCode(project).getSpaceCode();// .getIdentifier().split("/")[1];
                message.add(project);
                message.add((String) datasetTable.getItem(next).getItemProperty("Sample").getValue());
                // message.add((String) table.getItem(next).getItemProperty("Sample Type").getValue());
                message.add((String) datasetTable.getItem(next).getItemProperty("dl_link").getValue());
                message.add((String) datasetTable.getItem(next).getItemProperty("File Name").getValue());
                message.add(space);
                // state.notifyObservers(message);
            } else {
                message.add("null");
            } // TODO
              // state.notifyObservers(message);

        }
    });

    this.datasetTable.addItemClickListener(new ItemClickListener() {
        @Override
        public void itemClick(ItemClickEvent event) {
            if (!event.isDoubleClick()) {
                String datasetCode = (String) datasetTable.getItem(event.getItemId()).getItemProperty("CODE")
                        .getValue();
                String datasetFileName = (String) datasetTable.getItem(event.getItemId())
                        .getItemProperty("File Name").getValue();
                URL url;
                try {
                    Resource res = null;
                    Object parent = datasetTable.getParent(event.getItemId());
                    if (parent != null) {
                        String parentDatasetFileName = (String) datasetTable.getItem(parent)
                                .getItemProperty("File Name").getValue();
                        url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode,
                                parentDatasetFileName + "/" + datasetFileName);
                    } else {
                        url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName);
                    }

                    Window subWindow = new Window();
                    VerticalLayout subContent = new VerticalLayout();
                    subContent.setMargin(true);
                    subWindow.setContent(subContent);
                    QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent();
                    Boolean visualize = false;

                    if (datasetFileName.endsWith(".pdf")) {
                        QcMlOpenbisSource re = new QcMlOpenbisSource(url);
                        StreamResource streamres = new StreamResource(re, datasetFileName);
                        streamres.setMIMEType("application/pdf");
                        res = streamres;
                        visualize = true;
                    }

                    if (visualize) {
                        LOGGER.debug("Is resource null?: " + String.valueOf(res == null));
                        BrowserFrame frame = new BrowserFrame("", res);

                        frame.setSizeFull();
                        subContent.addComponent(frame);

                        // Center it in the browser window
                        subWindow.center();
                        subWindow.setModal(true);
                        subWindow.setSizeFull();

                        frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS);

                        // Open it in the UI
                        ui.addWindow(subWindow);
                    }

                } catch (MalformedURLException e) {
                    LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s",
                            datasetCode));
                    Notification.show(
                            "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data",
                            Notification.Type.ERROR_MESSAGE);
                }
            }
        }
    });

    // this.vert.addComponent(buttonLayout);
    if (dataAvailable) {
        this.vert.addComponent(tableSection);
        tableSection.addComponent(buttonLayout);
        projDescription.setMargin(new MarginInfo(false, false, false, true));
    }
}

From source file:dhbw.clippinggorilla.userinterface.windows.PDFWindow.java

public static Window get(Path pdfFile) {
    Window window = new Window();
    window.setModal(true);//from w w w .  j a v  a  2 s .  c  o  m
    window.setResizable(false);
    window.setWidth("90%");
    window.setHeight("90%");
    window.addCloseShortcut(ShortcutAction.KeyCode.ENTER, null);
    BrowserFrame e = new BrowserFrame(pdfFile.getFileName().toString(), new FileResource(pdfFile.toFile()));
    e.setSizeFull();
    window.setContent(e);
    return window;
}

From source file:fi.aalto.drumbeat.drumbeatUI.DrumbeatinterfaceUI.java

License:Open Source License

private void creatTab_Resources() {
    VerticalLayout tab_internaldata = new VerticalLayout();
    tab_internaldata.setCaption("Internal resources");
    tabsheet.addTab(tab_internaldata);/* w w w.  j a  v  a 2  s .  c  om*/

    BrowserFrame browser = new BrowserFrame("", new ExternalResource("http://drumbeat.cs.hut.fi/home.html"));
    browser.setWidth("900px");
    browser.setHeight("450px");
    tab_internaldata.addComponent(browser);

    files_table.addContainerProperty("File name", String.class, null);
    listUploaded_IFCFiles();
    tab_internaldata.addComponent(files_table);

    contexts_table.addContainerProperty("Graph", String.class, null);
    contexts_table.addContainerProperty("Size", Long.class, null);
    tab_internaldata.addComponent(contexts_table);
}

From source file:fi.aalto.drumbeat.drumbeatUI.DrumbeatinterfaceUI.java

License:Open Source License

private void htmlView_BIMProject(VerticalLayout layout, long pid) {
    layout.removeAllComponents();/*from  w  ww  .  j av a2  s .co m*/
    ExternalResource er = new ExternalResource(DrumbeatConstants.bimsurfer_project_url + pid);
    BrowserFrame bim_browser = new BrowserFrame("", er);
    bim_browser.setWidth("900px");
    bim_browser.setHeight("800px");

    layout.addComponent(bim_browser);

}

From source file:fi.aalto.drumbeat.drumbeatUI.DrumbeatinterfaceUI.java

License:Open Source License

private void htmlView_Project(VerticalLayout layout, String project_name) {
    layout.removeAllComponents();//from  w w w. j ava2  s.  co m
    ExternalResource er = new ExternalResource(DrumbeatConstants.drumbeatview_project_url + project_name);
    BrowserFrame bim_browser = new BrowserFrame("", er);
    bim_browser.setWidth("700px");
    bim_browser.setHeight("650px");

    layout.addComponent(bim_browser);

}

From source file:fi.jasoft.dragdroplayouts.demo.views.DragdropIframeDragging.java

License:Apache License

private void addComponentsToLayout(DDAbsoluteLayout layout, String caption) {

    BrowserFrame frame = new BrowserFrame(caption,
            new ExternalResource("https://platform.twitter.com/widgets/tweet_button.html"));
    frame.setWidth("300px");
    frame.setHeight("300px");

    layout.addComponent(frame, "top:100px;left:50px");

}

From source file:gov.va.ehtac.myappsonfhir.ui.ValidicMarketPlace.java

public ValidicMarketPlace() {
    session = ((HealthElementsForPatientTouchKitUI) UI.getCurrent()).getSessionAttributes();
    setCaption("Health App Marketplace");
    final VerticalComponentGroup content = new VerticalComponentGroup();
    BrowserFrame browser = new BrowserFrame("",
            new ExternalResource("https://app.validic.com/54d4fdb88ee42122c2000013/dbsvmtYYW8e_o6bn2DMs"));
    browser.setWidth("100%");
    browser.setHeight("500px");
    content.addComponent(browser);//from   w  w  w. ja v a 2s.  c o m
    setContent(new CssLayout(content));
}

From source file:info.magnolia.ui.framework.app.embedded.EmbeddedPageViewImpl.java

License:Open Source License

@Override
public void setUrl(String url) {
    final BrowserFrame page = new BrowserFrame(null, new ExternalResource(url));
    page.setSizeFull();/* ww  w . ja v  a  2 s. c  o m*/
    layout.removeAllComponents();
    layout.addComponent(page);
}