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From source file:de.uni_tuebingen.qbic.qbicmainportlet.DatasetComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view.// w w w.j av a2 s .c om */ private void buildLayout() { this.vert.removeAllComponents(); this.vert.setSizeFull(); vert.setResponsive(true); // Table (containing datasets) section VerticalLayout tableSection = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); tableSection.setResponsive(true); tableSectionContent.setResponsive(true); // tableSectionContent.setCaption("Datasets"); // tableSectionContent.setIcon(FontAwesome.FLASK); // tableSection.addComponent(new Label(String.format("This project contains %s dataset(s).", // numberOfDatasets))); tableSectionContent.setMargin(new MarginInfo(true, false, true, false)); tableSection.addComponent(headerLabel); tableSectionContent.addComponent(this.table); vert.setMargin(new MarginInfo(false, true, false, false)); tableSection.setMargin(new MarginInfo(true, false, false, true)); // tableSectionContent.setMargin(true); // tableSection.setMargin(true); tableSection.addComponent(tableSectionContent); this.vert.addComponent(tableSection); table.setSizeFull(); tableSection.setSizeFull(); tableSectionContent.setSizeFull(); // this.table.setSizeFull(); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, true, true)); buttonLayout.setHeight(null); // buttonLayout.setWidth("100%"); buttonLayout.setSpacing(true); buttonLayout.setResponsive(true); // final Button visualize = new Button(VISUALIZE_BUTTON_CAPTION); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : table.getItemIds()) { ((CheckBox) table.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>" + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>" + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>" + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>" + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>" + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-party freeware. </p>" + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>" + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> " + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>"; export.setIcon(FontAwesome.DOWNLOAD); PopupView tooltip = new PopupView(new helpers.ToolTip(content)); tooltip.setHeight("44px"); HorizontalLayout help = new HorizontalLayout(); help.setSizeFull(); HorizontalLayout helpContent = new HorizontalLayout(); // helpContent.setSizeFull(); help.setMargin(new MarginInfo(false, false, false, true)); Label helpText = new Label("Attention: Click here before Download!"); helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML)); helpContent.addComponent(helpText); helpContent.addComponent(tooltip); helpContent.setSpacing(true); help.addComponent(helpContent); help.setComponentAlignment(helpContent, Alignment.TOP_CENTER); buttonLayout.addComponent(export); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); // buttonLayout.addComponent(visualize); buttonLayout.addComponent(this.download); /** * prepare download. */ download.setEnabled(false); download.setResource(new ExternalResource("javascript:")); // visualize.setEnabled(false); for (final Object itemId : this.table.getItemIds()) { setCheckedBox(itemId, (String) this.table.getItem(itemId).getItemProperty("CODE").getValue()); } this.table.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick() & !((boolean) table.getItem(event.getItemId()).getItemProperty("isDirectory").getValue())) { String datasetCode = (String) table.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) table.getItem(event.getItemId()).getItemProperty("File Name") .getValue(); URL url; try { Resource res = null; Object parent = table.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) table.getItem(parent) .getItemProperty("File Name").getValue(); url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + datasetFileName); } else { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, datasetFileName); } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.setSizeFull(); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".png")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); // streamres.setMIMEType("application/png"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/xml"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".alleles")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".tsv")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".GSvar")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".log")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; visualize = true; } if (visualize) { // LOGGER.debug("Is resource null?: " + String.valueOf(res == null)); BrowserFrame frame = new BrowserFrame("", res); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setHeight("75%"); subWindow.setWidth("75%"); subWindow.setResizable(false); frame.setSizeFull(); frame.setHeight("100%"); // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); Notification.show( "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", Notification.Type.ERROR_MESSAGE); } } } }); this.vert.addComponent(buttonLayout); this.vert.addComponent(help); }
From source file:de.uni_tuebingen.qbic.qbicmainportlet.LevelComponent.java
License:Open Source License
/** * Precondition: {DatasetView#table} has to be initialized. e.g. with * {DatasetView#buildFilterTable} If it is not, strange behaviour has to be expected. builds the * Layout of this view./*from ww w . j a v a2 s .c o m*/ */ private void buildLayout() { this.vert.removeAllComponents(); this.vert.setWidth("100%"); // Table (containing datasets) section VerticalLayout tableSectionDatasets = new VerticalLayout(); VerticalLayout tableSectionSamples = new VerticalLayout(); HorizontalLayout tableSectionContent = new HorizontalLayout(); HorizontalLayout sampletableSectionContent = new HorizontalLayout(); tableSectionContent.setMargin(new MarginInfo(false, false, false, false)); sampletableSectionContent.setMargin(new MarginInfo(false, false, false, false)); // tableSectionContent.setCaption("Datasets"); // tableSectionContent.setIcon(FontAwesome.FLASK); descriptionLabel.setWidth("100%"); tableSectionDatasets.addComponent(descriptionLabel); sampletableSectionContent.addComponent(sampleGrid); tableSectionContent.addComponent(this.datasetTable); tableSectionDatasets.setMargin(new MarginInfo(true, false, false, true)); tableSectionDatasets.setSpacing(true); tableSectionSamples.setMargin(new MarginInfo(true, false, true, true)); tableSectionSamples.setSpacing(true); tableSectionDatasets.addComponent(tableSectionContent); tableSectionSamples.addComponent(sampletableSectionContent); tableSectionSamples.addComponent(exportSamples); this.vert.addComponent(tableSectionDatasets); sampleGrid.setWidth("100%"); datasetTable.setWidth("100%"); tableSectionDatasets.setWidth("100%"); tableSectionSamples.setWidth("100%"); sampletableSectionContent.setWidth("100%"); tableSectionContent.setWidth("100%"); HorizontalLayout buttonLayout = new HorizontalLayout(); buttonLayout.setMargin(new MarginInfo(false, false, false, true)); buttonLayout.setHeight(null); buttonLayout.setSpacing(true); this.download.setEnabled(false); buttonLayout.setSpacing(true); Button checkAll = new Button("Select all datasets"); checkAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(true); } } }); Button uncheckAll = new Button("Unselect all datasets"); uncheckAll.addClickListener(new ClickListener() { @Override public void buttonClick(ClickEvent event) { for (Object itemId : datasetTable.getItemIds()) { ((CheckBox) datasetTable.getItem(itemId).getItemProperty("Select").getValue()).setValue(false); } } }); buttonLayout.addComponent(exportData); buttonLayout.addComponent(checkAll); buttonLayout.addComponent(uncheckAll); // buttonLayout.addComponent(visualize); buttonLayout.addComponent(this.download); String content = "<p> In case of multiple file selections, Project Browser will create a tar archive.</p>" + "<hr>" + "<p> If you need help on extracting a tar archive file, follow the tips below: </p>" + "<p>" + FontAwesome.WINDOWS.getHtml() + " Windows </p>" + "<p> To open/extract TAR file on Windows, you can use 7-Zip, Easy 7-Zip, PeaZip.</p>" + "<hr>" + "<p>" + FontAwesome.APPLE.getHtml() + " MacOS </p>" + "<p> To open/extract TAR file on Mac, you can use Mac OS built-in utility Archive Utility,<br> or third-part freeware. </p>" + "<hr>" + "<p>" + FontAwesome.LINUX.getHtml() + " Linux </p>" + "<p> You need to use command tar. The tar is the GNU version of tar archiving utility. <br> " + "To extract/unpack a tar file, type: $ tar -xvf file.tar</p>"; PopupView tooltip = new PopupView(new helpers.ToolTip(content)); tooltip.setHeight("44px"); HorizontalLayout help = new HorizontalLayout(); help.setSizeFull(); HorizontalLayout helpContent = new HorizontalLayout(); // helpContent.setSizeFull(); help.setMargin(new MarginInfo(false, false, false, true)); Label helpText = new Label("Attention: Click here before Download!"); helpContent.addComponent(new Label(FontAwesome.QUESTION_CIRCLE.getHtml(), ContentMode.HTML)); helpContent.addComponent(helpText); helpContent.addComponent(tooltip); helpContent.setSpacing(true); help.addComponent(helpContent); help.setComponentAlignment(helpContent, Alignment.TOP_CENTER); /** * prepare download. */ download.setResource(new ExternalResource("javascript:")); download.setEnabled(false); for (final Object itemId : this.datasetTable.getItemIds()) { setCheckedBox(itemId, (String) this.datasetTable.getItem(itemId).getItemProperty("CODE").getValue()); } this.datasetTable.addItemClickListener(new ItemClickListener() { @Override public void itemClick(ItemClickEvent event) { if (!event.isDoubleClick() & !((boolean) datasetTable.getItem(event.getItemId()) .getItemProperty("isDirectory").getValue())) { String datasetCode = (String) datasetTable.getItem(event.getItemId()).getItemProperty("CODE") .getValue(); String datasetFileName = (String) datasetTable.getItem(event.getItemId()) .getItemProperty("File Name").getValue(); URL url = null; try { Resource res = null; Object parent = datasetTable.getParent(event.getItemId()); if (parent != null) { String parentDatasetFileName = (String) datasetTable.getItem(parent) .getItemProperty("File Name").getValue(); try { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, parentDatasetFileName + "/" + URLEncoder.encode(datasetFileName, "UTF-8")); } catch (UnsupportedEncodingException e) { // TODO Auto-generated catch block e.printStackTrace(); } } else { try { url = datahandler.getOpenBisClient().getUrlForDataset(datasetCode, URLEncoder.encode(datasetFileName, "UTF-8")); } catch (UnsupportedEncodingException e) { // TODO Auto-generated catch block e.printStackTrace(); } } Window subWindow = new Window(); VerticalLayout subContent = new VerticalLayout(); subContent.setMargin(true); subContent.setSizeFull(); subWindow.setContent(subContent); QbicmainportletUI ui = (QbicmainportletUI) UI.getCurrent(); Boolean visualize = false; if (datasetFileName.endsWith(".pdf")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/pdf"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".png")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("application/png"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".qcML")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/xml"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".alleles")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".tsv")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".log")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".html")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/html"); res = streamres; visualize = true; } if (datasetFileName.endsWith(".GSvar")) { QcMlOpenbisSource re = new QcMlOpenbisSource(url); StreamResource streamres = new StreamResource(re, datasetFileName); streamres.setMIMEType("text/plain"); res = streamres; visualize = true; } if (visualize) { BrowserFrame frame = new BrowserFrame("", res); frame.setSizeFull(); subContent.addComponent(frame); // Center it in the browser window subWindow.center(); subWindow.setModal(true); subWindow.setSizeUndefined(); subWindow.setHeight("75%"); subWindow.setWidth("75%"); subWindow.setResizable(false); frame.setSizeFull(); frame.setHeight("100%"); // frame.setHeight((int) (ui.getPage().getBrowserWindowHeight() * 0.9), Unit.PIXELS); // Open it in the UI ui.addWindow(subWindow); } } catch (MalformedURLException e) { LOGGER.error(String.format("Visualization failed because of malformedURL for dataset: %s", datasetCode)); helpers.Utils.Notification("No file attached.", "Given dataset has no file attached to it!! Please Contact your project manager. Or check whether it already has some data", "error"); // Notification // .show( // "Given dataset has no file attached to it!! Please Contact your project manager. Or // check whether it already has some data", // Notification.Type.ERROR_MESSAGE); } } } }); this.vert.addComponent(help); this.vert.addComponent(buttonLayout); this.vert.addComponent(tableSectionSamples); }