Example usage for com.mongodb DBCursor toArray

Introduction

In this page you can find the example usage for com.mongodb DBCursor toArray.

Prototype

public List<DBObject> toArray()

Source Link

Document

Converts this cursor to an array.

Usage

From source file:org.opencb.cellbase.mongodb.db.network.PathwayMongoDBAdaptor.java

License:Apache License

@Override
public String getPathways() {
    BasicDBObject query = new BasicDBObject();

    BasicDBObject returnFields = new BasicDBObject();
    returnFields.put("_id", 0);
    returnFields.put("name", 1);
    returnFields.put("displayName", 1);
    returnFields.put("subPathways", 1);
    returnFields.put("parentPathway", 1);

    BasicDBObject orderBy = new BasicDBObject();
    orderBy.put("name", 1);

    DBCursor cursor = coll.find(query, returnFields).sort(orderBy);
    String result = cursor.toArray().toString();
    cursor.close();//from   w w  w .ja v  a2 s.c  om

    return result;
}

From source file:org.opencb.cellbase.mongodb.db.network.PathwayMongoDBAdaptor.java

License:Apache License

@Override
public String getTree() {
    BasicDBObject query = new BasicDBObject();
    query.put("parentPathway", "none");

    BasicDBObject returnFields = new BasicDBObject();
    returnFields.put("_id", 0);
    returnFields.put("name", 1);
    returnFields.put("displayName", 1);
    returnFields.put("subPathways", 1);

    BasicDBObject orderBy = new BasicDBObject();
    orderBy.put("displayName", 1);

    DBCursor cursor = coll.find(query, returnFields).sort(orderBy);
    String result = cursor.toArray().toString();
    cursor.close();// w  w  w. j  a va 2 s.c  o m

    return result;
}

From source file:org.opencb.cellbase.mongodb.db.network.PathwayMongoDBAdaptor.java

License:Apache License

@Override
public String getPathway(String pathwayId) {
    BasicDBObject query = new BasicDBObject();
    query.put("name", pathwayId);

    BasicDBObject returnFields = new BasicDBObject();
    returnFields.put("_id", 0);

    DBCursor cursor = coll.find(query, returnFields);
    String result = cursor.toArray().toString();
    cursor.close();/*from  w  w  w  .  jav a2  s.  c  o  m*/

    return result;
}

From source file:org.opencb.cellbase.mongodb.db.network.PathwayMongoDBAdaptor.java

License:Apache License

@Override
public String search(String searchBy, String searchText, boolean returnOnlyIds) {
    Pattern regex = Pattern.compile(searchText, Pattern.CASE_INSENSITIVE);

    BasicDBObject query = new BasicDBObject();
    if (searchBy.equalsIgnoreCase("pathway")) {
        query.put("displayName", regex);
    } else {/*from   w  ww.ja v  a 2  s .c  o m*/
        BasicDBObject query1 = new BasicDBObject("physicalEntities.params.displayName", regex);
        BasicDBObject query2 = new BasicDBObject("interactions.params.displayName", regex);
        ArrayList<BasicDBObject> queryList = new ArrayList<BasicDBObject>();
        queryList.add(query1);
        queryList.add(query2);
        query.put("$or", queryList);
    }

    System.out.println("Query: " + query);

    BasicDBObject returnFields = new BasicDBObject();
    returnFields.put("_id", 0);
    if (returnOnlyIds) {
        returnFields.put("name", 1);
    }

    DBCursor cursor = coll.find(query, returnFields);
    String result = cursor.toArray().toString();
    cursor.close();
    return result;
}

From source file:tango.mongo.MongoUtils.java

License:Open Source License

public static float[] getFloatArray(DBCursor cur, String key) {
    List<DBObject> list = cur.toArray();
    float[] res = new float[list.size()];
    boolean field = false;
    for (int i = 0; i < list.size(); i++) {
        BasicDBObject o = ((BasicDBObject) list.get(i));
        if (o.containsField(key)) {
            field = true;//  w w w  .j  a  va  2  s  . com
            res[i] = (float) o.getDouble(key);
        }
    }
    return field ? res : null;
}

From source file:tfg.mongoaccessservice.MongoResource.java

@GET
@Path("/getworkflows")
@Produces(MediaType.APPLICATION_JSON)//from ww  w.j  av a2 s .  co  m

public Response getWork() {
    DBCursor obj = null;
    try {
        DB db = ConnectionFactory.getInstance().getConnection();
        DBCollection coll = db.getCollection("mail");
        obj = coll.find();
        System.out.println(obj);
    } catch (UnknownHostException ex) {
        Logger.getLogger(MongoResource.class.getName()).log(Level.SEVERE, null, ex);
    }

    return Response.status(Response.Status.OK).entity(obj.toArray()).build();

}

From source file:v7cr.vaadin.DBCollectionContainer.java

License:Open Source License

private List<Object> initIds(DBCursor cursor) {
    List<DBObject> x = cursor.toArray();
    List<Object> _ids = new ArrayList<Object>(x.size());
    for (DBObject o : x) {
        _ids.add(o.get("_id"));
    }/* w w w. j a  v a 2s. com*/
    return _ids;
}