List of usage examples for com.lowagie.text.pdf PdfReader getSafeFile
public RandomAccessFileOrArray getSafeFile()
From source file:org.openelis.bean.WorksheetPrintReportBean.java
License:Open Source License
private Path fillPDFWorksheet(Integer worksheetId, String templateName, String userName) throws Exception { int i, j, formCapacity, diagramCapacity, pageNumber; AcroFields form;/*from w w w. j av a 2 s . com*/ AnalysisViewDO aVDO; ArrayList<AnalysisQaEventViewDO> aqeVDOs; ArrayList<Integer> analysisIds, qcLotIds; ArrayList<NoteViewDO> nVDOs; ArrayList<QcAnalyteViewDO> qaVDOs; ArrayList<QcLotViewDO> qlVDOs; ArrayList<SampleManager1> sMans; ArrayList<SampleOrganizationViewDO> sOrgs; ArrayList<SampleQaEventViewDO> sqeVDOs; ArrayList<SystemVariableDO> sysVars; ArrayList<WorksheetAnalysisViewDO> waVDOs; ByteArrayOutputStream page; Document doc; HashMap<Integer, ArrayList<QcAnalyteViewDO>> qaVDOMap; HashMap<Integer, ArrayList<WorksheetAnalysisViewDO>> waVDOMap; HashMap<Integer, QcLotViewDO> qlMap; HashMap<Integer, SampleManager1> sMap; OutputStream out; Path path; PatientDO patDO; PdfCopy writer; PdfReader reader; PdfStamper stamper; ProviderDO proDO; QcLotViewDO qlVDO; RandomAccessFileOrArray original; SampleEnvironmentalDO seDO; SampleDO sDO; SampleItemViewDO siVDO; SampleManager1 sMan; String collectionDateTime, dirName, now, qcLink; StringBuilder aNotes, aQaevents, sNotes, sQaevents; WorksheetAnalysisDO waDO1; WorksheetItemDO wiDO1; WorksheetManager1 wMan; WorksheetViewDO wVDO; now = ReportUtil.toString(new Date(), Messages.get().dateTimePattern()); dirName = ""; try { sysVars = systemVariable.fetchByName("worksheet_template_directory", 1); if (sysVars.size() > 0) dirName = ((SystemVariableDO) sysVars.get(0)).getValue(); } catch (Exception anyE) { throw new Exception("Error retrieving temp directory variable: " + anyE.getMessage()); } analysisIds = new ArrayList<Integer>(); qcLotIds = new ArrayList<Integer>(); waVDOMap = new HashMap<Integer, ArrayList<WorksheetAnalysisViewDO>>(); wMan = worksheetManager.fetchById(worksheetId, WorksheetManager1.Load.DETAIL, WorksheetManager1.Load.REAGENT); for (WorksheetAnalysisViewDO data : WorksheetManager1Accessor.getAnalyses(wMan)) { waVDOs = waVDOMap.get(data.getWorksheetItemId()); if (waVDOs == null) { waVDOs = new ArrayList<WorksheetAnalysisViewDO>(); waVDOMap.put(data.getWorksheetItemId(), waVDOs); } waVDOs.add(data); if (data.getAnalysisId() != null) analysisIds.add(data.getAnalysisId()); else if (data.getQcLotId() != null) qcLotIds.add(data.getQcLotId()); } sMap = new HashMap<Integer, SampleManager1>(); if (analysisIds.size() > 0) { sMans = sampleManager.fetchByAnalyses(analysisIds, SampleManager1.Load.ORGANIZATION, SampleManager1.Load.QA, SampleManager1.Load.NOTE, SampleManager1.Load.SINGLEANALYSIS, SampleManager1.Load.PROVIDER); for (SampleManager1 data : sMans) { for (AnalysisViewDO data1 : SampleManager1Accessor.getAnalyses(data)) sMap.put(data1.getId(), data); } } qaVDOMap = new HashMap<Integer, ArrayList<QcAnalyteViewDO>>(); qlMap = new HashMap<Integer, QcLotViewDO>(); if (qcLotIds.size() > 0) { qlVDOs = qcLot.fetchByIds(qcLotIds); for (QcLotViewDO data : qlVDOs) { qlMap.put(data.getId(), data); try { qaVDOs = qcAnalyte.fetchByQcId(data.getQcId()); qaVDOMap.put(data.getQcId(), qaVDOs); } catch (NotFoundException nfE) { // ignore this error as leaving the hash record blank will not // cause an error due to a null check later on in the code } } } formCapacity = 1; out = null; try { path = ReportUtil.createTempFile("worksheetPrint", ".pdf", null); out = Files.newOutputStream(path); reader = new PdfReader(dirName + "OEWorksheet" + templateName + ".pdf"); original = reader.getSafeFile(); form = reader.getAcroFields(); if (form.getField("capacity") != null) formCapacity = Integer.parseInt(form.getField("capacity")); if (form.getField("diagram_capacity") != null) diagramCapacity = Integer.parseInt(form.getField("diagram_capacity")); else diagramCapacity = formCapacity; doc = new Document(reader.getPageSizeWithRotation(1)); writer = new PdfCopy(doc, out); doc.open(); reader.close(); i = -1; pageNumber = -1; form = null; page = null; stamper = null; wVDO = wMan.getWorksheet(); for (WorksheetItemDO wiDO : WorksheetManager1Accessor.getItems(wMan)) { j = wiDO.getPosition() % diagramCapacity; if (j == 0) j = diagramCapacity; for (WorksheetAnalysisViewDO waVDO : waVDOMap.get(wiDO.getId())) { if (i == -1 || i > formCapacity || j > diagramCapacity) { if (i != -1) { fillReagentFields(form, wMan); stamper.setFormFlattening(true); renameFields(form, pageNumber); flattenFilledFields(stamper, form, formCapacity, pageNumber); stamper.close(); reader.close(); reader = new PdfReader(page.toByteArray()); writer.addPage(writer.getImportedPage(reader, 1)); reader.close(); } reader = new PdfReader(original, null); page = new ByteArrayOutputStream(); stamper = new PdfStamper(reader, page); form = stamper.getAcroFields(); i = 1; pageNumber++; form.setField("current_date_time", now); form.setField("username", userName); form.setField("worksheet_description_1", wVDO.getDescription()); } qcLink = ""; if (waVDO.getWorksheetAnalysisId() != null) { try { waDO1 = worksheetAnalysis.fetchById(waVDO.getWorksheetAnalysisId()); wiDO1 = worksheetItem.fetchById(waDO1.getWorksheetItemId()); qcLink = waDO1.getAccessionNumber() + " (" + wiDO1.getPosition() + ")"; } catch (Exception anyE) { log.log(Level.SEVERE, anyE.getMessage(), anyE); } } form.setField("worksheet_id_" + (i), wVDO.getId().toString()); form.setField("created_date_" + (i), ReportUtil.toString(wVDO.getCreatedDate(), Messages.get().dateTimePattern())); if (waVDOMap.get(wiDO.getId()).indexOf(waVDO) == 0) form.setField("position_" + (i), wiDO.getPosition().toString()); if (waVDO.getAnalysisId() != null) { sMan = sMap.get(waVDO.getAnalysisId()); sDO = sMan.getSample(); patDO = null; proDO = null; seDO = null; if (Constants.domain().CLINICAL.equals(sDO.getDomain())) { patDO = sMan.getSampleClinical().getPatient(); proDO = sMan.getSampleClinical().getProvider(); } else if (Constants.domain().NEONATAL.equals(sDO.getDomain())) { patDO = sMan.getSampleNeonatal().getPatient(); proDO = sMan.getSampleNeonatal().getProvider(); } else if (Constants.domain().ENVIRONMENTAL.equals(sDO.getDomain())) { seDO = sMan.getSampleEnvironmental(); } sOrgs = SampleManager1Accessor.getOrganizations(sMan); aVDO = (AnalysisViewDO) sMan.getObject(Constants.uid().getAnalysis(waVDO.getAnalysisId())); siVDO = (SampleItemViewDO) sMan .getObject(Constants.uid().getSampleItem(aVDO.getSampleItemId())); sQaevents = new StringBuilder(); sqeVDOs = SampleManager1Accessor.getSampleQAs(sMan); if (sqeVDOs != null && sqeVDOs.size() > 0) { for (SampleQaEventViewDO sqeVDO : sqeVDOs) { if (sQaevents.length() > 0) sQaevents.append(" | "); sQaevents.append(sqeVDO.getQaEventName()); } } aQaevents = new StringBuilder(); aqeVDOs = SampleManager1Accessor.getAnalysisQAs(sMan); if (aqeVDOs != null && aqeVDOs.size() > 0) { for (AnalysisQaEventViewDO aqeVDO : aqeVDOs) { if (!waVDO.getAnalysisId().equals(aqeVDO.getAnalysisId())) continue; if (aQaevents.length() > 0) aQaevents.append(" | "); aQaevents.append(aqeVDO.getQaEventName()); } } sNotes = new StringBuilder(); nVDOs = new ArrayList<NoteViewDO>(); if (SampleManager1Accessor.getSampleInternalNotes(sMan) != null) nVDOs.addAll(SampleManager1Accessor.getSampleInternalNotes(sMan)); if (SampleManager1Accessor.getSampleExternalNote(sMan) != null) nVDOs.add(SampleManager1Accessor.getSampleExternalNote(sMan)); if (nVDOs != null && nVDOs.size() > 0) { for (NoteViewDO nVDO : nVDOs) { if (sNotes.length() > 0) sNotes.append(" | "); sNotes.append(nVDO.getText()); } } aNotes = new StringBuilder(); nVDOs = new ArrayList<NoteViewDO>(); if (SampleManager1Accessor.getAnalysisInternalNotes(sMan) != null) nVDOs.addAll(SampleManager1Accessor.getAnalysisInternalNotes(sMan)); if (SampleManager1Accessor.getAnalysisExternalNotes(sMan) != null) nVDOs.addAll(SampleManager1Accessor.getAnalysisExternalNotes(sMan)); if (nVDOs != null && nVDOs.size() > 0) { for (NoteViewDO nVDO : nVDOs) { if (!waVDO.getAnalysisId().equals(nVDO.getReferenceId())) continue; if (aNotes.length() > 0) aNotes.append(" | "); aNotes.append(nVDO.getText()); } } if (waVDOMap.get(wiDO.getId()).size() > 1) form.setField("well_label_" + (j), wiDO.getPosition().toString()); else form.setField("well_label_" + (j), sDO.getAccessionNumber().toString()); form.setField("accession_number_" + (i), sDO.getAccessionNumber().toString()); form.setField("qc_link_" + (i), qcLink); if (sDO.getCollectionDate() != null) { collectionDateTime = ReportUtil.toString(sDO.getCollectionDate(), Messages.get().datePattern()); if (sDO.getCollectionTime() != null) { collectionDateTime += " "; collectionDateTime += ReportUtil.toString(sDO.getCollectionTime(), Messages.get().timePattern()); } form.setField("collection_date_" + (i), collectionDateTime); } form.setField("received_date_" + (i), ReportUtil.toString(sDO.getReceivedDate(), Messages.get().dateTimePattern())); if (patDO != null) { form.setField("patient_last_" + (i), patDO.getLastName()); form.setField("patient_first_" + (i), patDO.getFirstName()); } if (proDO != null) { form.setField("provider_last_" + (i), proDO.getLastName()); form.setField("provider_first_" + (i), proDO.getFirstName()); } if (seDO != null) { form.setField("env_location_" + (i), seDO.getLocation()); form.setField("env_description_" + (i), seDO.getDescription()); } if (sOrgs != null && sOrgs.size() > 0) { for (SampleOrganizationViewDO soVDO : sOrgs) { if (Constants.dictionary().ORG_REPORT_TO.equals(soVDO.getTypeId())) form.setField("organization_name_" + (i), soVDO.getOrganizationName()); else if (Constants.dictionary().ORG_BILL_TO.equals(soVDO.getTypeId())) form.setField("bill_to_name_" + (i), soVDO.getOrganizationName()); } } form.setField("type_of_sample_" + (i), siVDO.getTypeOfSample()); form.setField("source_of_sample_" + (i), siVDO.getSourceOfSample()); form.setField("source_other_" + (i), siVDO.getSourceOther()); form.setField("container_reference_" + (i), siVDO.getContainerReference()); form.setField("test_" + (i), aVDO.getTestName()); form.setField("method_" + (i), aVDO.getMethodName()); form.setField("sample_qaevent_" + (i), sQaevents.toString()); form.setField("analysis_qaevent_" + (i), aQaevents.toString()); form.setField("sample_note_" + (i), sNotes.toString()); form.setField("analysis_note_" + (i), aNotes.toString()); } else if (waVDO.getQcLotId() != null) { qlVDO = qlMap.get(waVDO.getQcLotId()); form.setField("well_label_" + (j), qlVDO.getQcName()); form.setField("qc_link_" + (i), qcLink); form.setField("qc_name_" + (i), qlVDO.getQcName()); form.setField("qc_lot_" + (i), qlVDO.getLotNumber()); form.setField("qc_usable_" + (i), ReportUtil.toString(qlVDO.getUsableDate(), Messages.get().dateTimePattern())); form.setField("qc_expiration_" + (i), ReportUtil.toString(qlVDO.getExpireDate(), Messages.get().dateTimePattern())); qaVDOs = qaVDOMap.get(qlVDO.getQcId()); if (qaVDOs != null && !qaVDOs.isEmpty()) form.setField("qc_expected_value_" + (i), qaVDOs.get(0).getValue()); } i++; } } fillReagentFields(form, wMan); stamper.setFormFlattening(true); renameFields(form, pageNumber); flattenFilledFields(stamper, form, formCapacity, pageNumber); stamper.close(); reader.close(); reader = new PdfReader(page.toByteArray()); writer.addPage(writer.getImportedPage(reader, 1)); doc.close(); reader.close(); } finally { try { if (out != null) out.close(); } catch (Exception e) { log.severe("Could not close output stream for worksheet print report"); } } return path; }