Example usage for com.lowagie.text Element ALIGN_LEFT

List of usage examples for com.lowagie.text Element ALIGN_LEFT

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Introduction

In this page you can find the example usage for com.lowagie.text Element ALIGN_LEFT.

Prototype

int ALIGN_LEFT

To view the source code for com.lowagie.text Element ALIGN_LEFT.

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Document

A possible value for paragraph alignment.

Usage

From source file:ispyb.client.biosaxs.pdf.DataAcquisitionPDFReport.java

License:Open Source License

private Element getImageTable(Experiment3VO experiment, List<Buffer3VO> buffers) {

    PdfPTable table = new PdfPTable(ImageColumns.length);

    table.setWidthPercentage(100f);//from  w  ww  . jav a  2  s .c om
    table.getDefaultCell().setPadding(3);
    table.getDefaultCell().setColspan(ImageColumns.length);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
    table.getDefaultCell().setColspan(1);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    for (int i = 0; i < ImageColumns.length; i++) {
        table.addCell(this.getCell(ImageColumns[i], BaseFont.HELVETICA_BOLD));
    }
    table.getDefaultCell().setBackgroundColor(null);

    List<Measurement3VO> measurements = experiment.getMeasurements();
    Collections.sort(measurements, MeasurementComparator
            .compare(MeasurementComparator.getComparator(MeasurementComparator.PRIOTIRY_SORT_ASC)));
    for (int x = 0; x < measurements.size(); x++) {
        Measurement3VO measurement = measurements.get(x);
        Specimen3VO specimen = experiment.getSampleById(measurement.getSpecimenId());
        if (specimen.getMacromolecule3VO() != null) {
            SaxsDataCollection3VO dataCollection = experiment
                    .getDataCollectionByMeasurementId(measurement.getMeasurementId());

            ArrayList<String> list = this.addAnalysisRow(measurement, experiment, buffers);
            if (list.size() > 0) {
                int sizeTable = list.get(0).length();
                PdfPTable nested1 = new PdfPTable(sizeTable);
                nested1.getDefaultCell().setBorder(0);
                for (int i = 0; i < list.size(); i++) {
                    if (i == 0) {
                        nested1.getDefaultCell().setBackgroundColor(PdfRtfExporter.LIGHT_GREY_COLOR);
                        nested1.getDefaultCell().setBorder(0);
                        Paragraph cell = this.getCell(this.COLUMNS[i] + ": " + list.get(i));
                        nested1.addCell(cell);
                    } else {
                        nested1.getDefaultCell().setBackgroundColor(null);
                        nested1.getDefaultCell().setBorder(0);
                        PdfPCell cell = new PdfPCell(this.getCell(this.COLUMNS[i] + ": " + list.get(i)));
                        cell.setBorder(0);
                        nested1.addCell(cell);
                    }
                }
                table.addCell(new PdfPCell(nested1));

                if (dataCollection.getSubstraction3VOs() != null) {
                    if (dataCollection.getSubstraction3VOs().size() > 0) {
                        Subtraction3VO substraction = ((Subtraction3VO) (dataCollection.getSubstraction3VOs()
                                .toArray()[0]));

                        String scatteringImage = BiosaxsActions
                                .checkFilePathForDevelopment(substraction.getScatteringFilePath());
                        if (scatteringImage != null) {
                            if (new File(scatteringImage).exists()) {
                                try {
                                    PdfPCell cell = new PdfPCell(Image.getInstance(scatteringImage), true);
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                } catch (Exception e) {
                                    PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                    e.printStackTrace();
                                }
                            } else {
                                PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                cell.setBorder(0);
                                table.addCell(cell);
                            }
                        } else {
                            PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                            cell.setBorder(0);
                            table.addCell(cell);
                        }

                        String guinierImage = BiosaxsActions
                                .checkFilePathForDevelopment(substraction.getGuinierFilePath());
                        if (guinierImage != null) {
                            if (new File(guinierImage).exists()) {
                                try {
                                    PdfPCell cell = new PdfPCell(Image.getInstance(guinierImage), true);
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                } catch (Exception e) {
                                    PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                    e.printStackTrace();
                                }
                            } else {
                                PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                cell.setBorder(0);
                                table.addCell(cell);
                            }
                        } else {
                            PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                            cell.setBorder(0);
                            table.addCell(cell);
                        }

                        String kraktyImage = BiosaxsActions
                                .checkFilePathForDevelopment(substraction.getKratkyFilePath());
                        if (kraktyImage != null) {
                            if (new File(kraktyImage).exists()) {
                                try {
                                    PdfPCell cell = new PdfPCell(Image.getInstance(kraktyImage), true);
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                } catch (Exception e) {
                                    PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                    e.printStackTrace();
                                }
                            } else {
                                PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                cell.setBorder(0);
                                table.addCell(cell);
                            }
                        } else {
                            PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                            cell.setBorder(0);
                            table.addCell(cell);
                        }

                        String gnomImage = BiosaxsActions
                                .checkFilePathForDevelopment(substraction.getGnomFilePath());
                        if (gnomImage != null) {
                            if (new File(gnomImage).exists()) {
                                try {
                                    PdfPCell cell = new PdfPCell(Image.getInstance(gnomImage), true);
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                } catch (Exception e) {
                                    PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                    cell.setBorder(0);
                                    table.addCell(cell);
                                    e.printStackTrace();
                                }
                            } else {
                                PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                                cell.setBorder(0);
                                table.addCell(cell);
                            }
                        } else {
                            PdfPCell cell = new PdfPCell(this.getCell("Image not found"));
                            cell.setBorder(0);
                            table.addCell(cell);
                        }
                    }
                }
            }
        }
    }
    return table;
}

From source file:ispyb.client.biosaxs.pdf.DataAcquisitionPDFReport.java

License:Open Source License

private Element getAnalysis(Experiment3VO experiment, List<Buffer3VO> buffers) {
    PdfPTable table = new PdfPTable(COLUMNS.length);

    /** SUBTITLE **/
    table.getDefaultCell().setColspan(5);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.addCell(this.getCell("Sample", BaseFont.HELVETICA_BOLD));

    table.getDefaultCell().setColspan(5);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.addCell(this.getCell("Guinier", BaseFont.HELVETICA_BOLD));

    table.getDefaultCell().setColspan(3);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.addCell(this.getCell("Gnom", BaseFont.HELVETICA_BOLD));

    table.getDefaultCell().setColspan(2);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.addCell(this.getCell("Porod", BaseFont.HELVETICA_BOLD));
    table.setWidthPercentage(100f);//w w w . j  a  v a2s  .co  m
    table.getDefaultCell().setPadding(3);
    table.getDefaultCell().setColspan(COLUMNS.length);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
    table.getDefaultCell().setColspan(1);
    table.getDefaultCell().setBackgroundColor(PdfRtfExporter.BLUE_COLOR);
    for (int i = 0; i < COLUMNS.length; i++) {
        table.addCell(this.getCell(COLUMNS[i], BaseFont.HELVETICA_BOLD));
    }
    table.getDefaultCell().setBackgroundColor(null);

    List<List<String>> data = this.getExperimentAnalysisData(experiment, buffers);

    for (List<String> list : data) {
        for (String string : list) {
            table.addCell(getCell(string));
        }
    }
    return table;
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/***
 * sets the sessions informations in the pdf document for fx or ix accounts
 * (Issue 1049)/*from   w ww .jav a 2 s  . c  om*/
 * 
 * @param document
 * @throws Exception
 */
private void setSessionTable(Document document) throws Exception {
    if (slv != null && (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)
            || proposalCode.equals(Constants.PROPOSAL_CODE_IX))) {
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) { // session
            // title
            // only
            // for
            // FX
            // accounts
            document.add(new Paragraph("Session title:", FONT_TITLE));
            document.add(new Paragraph(slv.getSessionTitle(), FONT_DOC));
        }
        Table sessionTable = new Table(2);
        // sessionTable.setWidth(50); // percentage
        sessionTable.setPadding(3);
        sessionTable.setCellsFitPage(true);
        sessionTable.getDefaultCell().setBorderWidth(0);
        sessionTable.setBorder(0);
        sessionTable.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
        boolean hasData = false;
        // print only if the value > 0
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) { // structure
            // determinations
            // only
            // for
            // FX
            // accounts
            if (slv.getStructureDeterminations() != null && !slv.getStructureDeterminations().isNaN()
                    && slv.getStructureDeterminations() != 0) {
                hasData = true;
                sessionTable.addCell(new Paragraph("Structure determinations", FONT_DOC_BOLD));
                sessionTable.addCell(new Paragraph("" + slv.getStructureDeterminations(), FONT_DOC));
            }
        }
        if (slv.getDewarTransport() != null && !slv.getDewarTransport().isNaN()
                && slv.getDewarTransport() != 0) {
            hasData = true;
            sessionTable.addCell(new Paragraph("Dewar transport", FONT_DOC_BOLD));
            sessionTable.addCell(new Paragraph("" + slv.getDewarTransport(), FONT_DOC));
        }
        if (slv.getDatabackupFrance() != null && !slv.getDatabackupFrance().isNaN()
                && slv.getDatabackupFrance() != 0) {
            hasData = true;
            sessionTable.addCell(new Paragraph("Data backup & Express delivery France", FONT_DOC_BOLD));
            sessionTable.addCell(new Paragraph("" + slv.getDatabackupFrance(), FONT_DOC));
        }
        if (slv.getDatabackupEurope() != null && !slv.getDatabackupEurope().isNaN()
                && slv.getDatabackupEurope() != 0) {
            hasData = true;
            sessionTable.addCell(new Paragraph("Data backup & Express delivery Europe", FONT_DOC_BOLD));
            sessionTable.addCell(new Paragraph("" + slv.getDatabackupEurope(), FONT_DOC));
        }
        if (hasData) {
            document.add(sessionTable);
        }
    }
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set a line for a specified dataCollection in the dataCollection table
 * /*from  w w  w .  j  ava  2  s  . c om*/
 * @param document
 * @param table
 * @param col
 * @param session
 * @param df2
 * @param df3
 * @throws Exception
 */
private void setDataCollectionData(Document document, Table table, DataCollection3VO col,
        Session3Service sessionService, AutoProc3VO autoProcValue, AutoProcScalingStatistics3VO autoProcOverall,
        AutoProcScalingStatistics3VO autoProcInner, AutoProcScalingStatistics3VO autoProcOuter,
        boolean withAutoProcessing, boolean setEDNAInfo, ScreeningOutput3VO screeningOutput,
        ScreeningOutputLattice3VO screeningOutputLattice) throws Exception {
    // Session3VO slv = sessionService.findByPk(col.getSessionId(), false,
    // false, false);
    DataCollectionGroup3VO dcGroup = col.getDataCollectionGroupVO();
    Session3VO slv = dcGroup.getSessionVO();
    // here slv is not null
    if (col.getNumberOfImages() != null) {
        if (!DataCollectionExporter.isDataCollectionScreening(col)) {
            table.getDefaultCell().setGrayFill(GREY_FILL_DATA_COLLECT);
        } else
            table.getDefaultCell().setGrayFill(GREY_FILL_DATA);
    }
    if (col.getImagePrefix() != null)
        table.addCell(new Paragraph(col.getImagePrefix(), FONT_DOC));
    else
        table.addCell("");
    // The beamline name is only displayed for select by protein or by
    // sample name
    if (name != null) {
        if (slv.getBeamlineName() != null)
            table.addCell(new Paragraph(slv.getBeamlineName(), FONT_DOC));
        else
            table.addCell("");
    }

    if (col.getDataCollectionNumber() != null)
        table.addCell(new Paragraph(col.getDataCollectionNumber().toString(), FONT_DOC));
    else
        table.addCell("");

    if (col.getNumberOfImages() != null)
        table.addCell(new Paragraph(col.getNumberOfImages().toString(), FONT_DOC));
    else
        table.addCell("");

    if (withAutoProcessing) {
        // space group
        if (autoProcValue != null && autoProcValue.getSpaceGroup() != null) {
            Paragraph p = new Paragraph(autoProcValue.getSpaceGroup(), FONT_DOC);
            table.addCell(p);
        } else if (setEDNAInfo && screeningOutputLattice != null
                && screeningOutputLattice.getSpaceGroup() != null) {
            Paragraph p = new Paragraph(screeningOutputLattice.getSpaceGroup(), FONT_DOC);
            table.addCell(p);
        } else
            table.addCell("");

        // unit cell
        if (autoProcValue != null && autoProcValue.getSpaceGroup() != null)
            table.addCell(new Paragraph(autoProcValue.getRefinedCellA() + " ("
                    + autoProcValue.getRefinedCellAlpha() + ")\n" + autoProcValue.getRefinedCellB() + " ("
                    + autoProcValue.getRefinedCellBeta() + ")\n" + autoProcValue.getRefinedCellC() + " ("
                    + autoProcValue.getRefinedCellGamma() + ")", FONT_DOC));
        else if (setEDNAInfo && screeningOutputLattice != null && screeningOutputLattice.getUnitCell_a() != null
                && screeningOutputLattice.getUnitCell_b() != null
                && screeningOutputLattice.getUnitCell_c() != null
                && screeningOutputLattice.getUnitCell_alpha() != null
                && screeningOutputLattice.getUnitCell_beta() != null
                && screeningOutputLattice.getUnitCell_gamma() != null) {
            Paragraph p = new Paragraph(df3.format(screeningOutputLattice.getUnitCell_a()) + " ("
                    + df3.format(screeningOutputLattice.getUnitCell_alpha()) + ")\n"
                    + df3.format(screeningOutputLattice.getUnitCell_b()) + " ("
                    + df3.format(screeningOutputLattice.getUnitCell_beta()) + ")\n"
                    + df3.format(screeningOutputLattice.getUnitCell_c()) + " ("
                    + df3.format(screeningOutputLattice.getUnitCell_gamma()) + ")", FONT_DOC);
            table.addCell(p);
        } else
            table.addCell("");

        // completeness, rsymm, processed resolution
        String completenessString = new String();
        String rSymmString = new String();
        String resolutionString = new String();

        if (autoProcOverall != null && autoProcInner != null && autoProcOuter != null) {
            completenessString += df2.format(autoProcInner.getCompleteness()) + "\n"
                    + df2.format(autoProcOuter.getCompleteness()) + "\n"
                    + df2.format(autoProcOverall.getCompleteness());
            rSymmString += (autoProcInner.getRmerge() == null ? "" : df2.format(autoProcInner.getRmerge()))
                    + "\n" + (autoProcOuter.getRmerge() == null ? "" : df2.format(autoProcOuter.getRmerge()))
                    + "\n"
                    + (autoProcOverall.getRmerge() == null ? "" : df2.format(autoProcOverall.getRmerge()));
            resolutionString += autoProcInner.getResolutionLimitLow() + " - "
                    + autoProcInner.getResolutionLimitHigh() + "\n" + autoProcOuter.getResolutionLimitLow()
                    + " - " + autoProcOuter.getResolutionLimitHigh() + "\n"
                    + autoProcOverall.getResolutionLimitLow() + " - "
                    + autoProcOverall.getResolutionLimitHigh();
        } else if (setEDNAInfo && screeningOutput != null && screeningOutput.getRankingResolution() != null) {
            resolutionString = df2.format(screeningOutput.getRankingResolution());
        }
        table.addCell(new Paragraph(completenessString, FONT_DOC));
        table.addCell(new Paragraph(rSymmString, FONT_DOC));
        table.addCell(new Paragraph(resolutionString, FONT_DOC));
    }

    // detector resolution
    if (col.getResolution() != null)
        table.addCell(new Paragraph(df2.format(col.getResolution()), FONT_DOC));
    else
        table.addCell("");

    // wavelength
    if (col.getWavelength() != null)
        table.addCell(new Paragraph(df3.format(col.getWavelength()), FONT_DOC));
    else
        table.addCell("");

    // phi range
    if (col.getAxisRange() != null)
        table.addCell(new Paragraph(df2.format(col.getAxisRange()), FONT_DOC));
    else
        table.addCell("");

    // Column crystalClass only for IFX proposal in case of MXPress
    // experiment
    if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) {
        // if (col.getCrystalClass() != null && col.getCrystalClass() != "")
        // table.addCell(new
        // Paragraph(col.getCrystalClass(), new Font(Font.HELVETICA, 8)));
        // else table.addCell("");
        DataCollectionGroup3Service dataCollectionGroupService = (DataCollectionGroup3Service) ejb3ServiceLocator
                .getLocalService(DataCollectionGroup3Service.class);
        DataCollectionGroup3VO group = dataCollectionGroupService.findByPk(col.getDataCollectionGroupVOId(),
                true, true);
        boolean firstCollect = group.isFirstCollect(col);
        if (dcGroup.getCrystalClass() != null) {
            int idCC = getCrystalClassIndex(listOfCrystalClass, dcGroup.getCrystalClass().trim().toUpperCase());
            String crystalS = "";
            if (idCC == -1) {
                crystalS = dcGroup.getCrystalClass().toString();
            } else {
                crystalS = listOfCrystalClass.get(idCC).getCrystalClassName();
            }
            String crystalCell = crystalS;
            if (!firstCollect && crystalS != null && !crystalS.equals("")) {
                crystalCell = "(" + crystalS + ")";
            }
            table.addCell(new Paragraph(crystalCell, FONT_DOC));
        } else
            table.addCell("");

    }
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
    if (col.getComments() != null && col.getComments() != "")
        table.addCell(new Paragraph(col.getComments(), FONT_DOC));
    else
        table.addCell("");
    table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set the energy scan table//  w w w.  j a  v  a  2s . com
 * 
 * @param document
 * @throws Exception
 */
private void setEnergyScansTable(Document document) throws Exception {
    if (slv == null) {// if session is null, no sense to display energy
                      // scans
        return;
    }
    document.add(new Paragraph("Energy Scans:", FONT_TITLE));
    document.add(new Paragraph(" "));
    if (energyScanList == null || energyScanList.isEmpty()) {
        document.add(new Paragraph("There is no energy scan in this report", FONT_DOC));
    } else {
        int NumColumnsES = 12;
        Table tableES = new Table(NumColumnsES);
        int headerwidthsSessionES[] = { 7, 7, 7, 7, 7, 7, 6, 6, 7, 7, 7, 25 }; // percentage
        int headerwidthsMXPressES[] = { 7, 7, 7, 7, 7, 7, 6, 6, 7, 7, 7, 8, 17 }; // percentage
        tableES.setWidths(headerwidthsSessionES);
        // Column crystalClass added only for IFX proposal in case of
        // MXPress experiment
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) {
            tableES = new Table(NumColumnsES + 1);
            tableES.setWidths(headerwidthsMXPressES);
        }

        tableES.setWidth(100); // percentage
        tableES.setPadding(3);
        tableES.setCellsFitPage(true);
        tableES.getDefaultCell().setBorderWidth(1);
        tableES.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);

        // Energy Scan Header

        tableES.getDefaultCell().setGrayFill(GREY_FILL_HEADER);
        tableES.addCell(new Paragraph("Element", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Inflection Energy\n(keV)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Exposure Time\n(s)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Inflection f'\n(e)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Inflection f''\n(e)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Peak Energy\n(keV)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Peak f'\n(e)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Peak f''\n(e)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Beam size Hor.\n(" + Constants.MICRO + "m)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Beam size Ver.\n(" + Constants.MICRO + "m)", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Transm. Factor\n(%)", FONT_DOC_BOLD));
        // Column crystalClass only for IFX proposal in case of MXPress
        // experiment
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX))
            tableES.addCell(new Paragraph("Crystal class", FONT_DOC_BOLD));
        tableES.addCell(new Paragraph("Comments", FONT_DOC_BOLD));
        tableES.getDefaultCell().setGrayFill(GREY_FILL_DATA);
        tableES.getDefaultCell().setBorderWidth(1);

        // Energy Scan Rows

        Iterator<EnergyScan3VO> itES = energyScanList.iterator();
        while (itES.hasNext()) {
            EnergyScan3VO col = itES.next();

            if (col.getElement() != null)
                tableES.addCell(new Paragraph(col.getElement().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getExposureTime() != null)
                tableES.addCell(new Paragraph(col.getExposureTime().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getInflectionEnergy() != null)
                tableES.addCell(new Paragraph(col.getInflectionEnergy().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getInflectionFPrime() != null)
                tableES.addCell(new Paragraph(col.getInflectionFPrime().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getInflectionFDoublePrime() != null)
                tableES.addCell(new Paragraph(col.getInflectionFDoublePrime().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getPeakEnergy() != null)
                tableES.addCell(new Paragraph(col.getPeakEnergy().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getPeakFPrime() != null)
                tableES.addCell(new Paragraph(col.getPeakFPrime().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getPeakFDoublePrime() != null)
                tableES.addCell(new Paragraph(col.getPeakFDoublePrime().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getBeamSizeHorizontal() != null)
                tableES.addCell(new Paragraph(col.getBeamSizeHorizontal().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getBeamSizeVertical() != null)
                tableES.addCell(new Paragraph(col.getBeamSizeVertical().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (col.getTransmissionFactor() != null)
                tableES.addCell(new Paragraph(col.getTransmissionFactor().toString(), FONT_DOC));
            else
                tableES.addCell("");

            if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) {
                // if (col.getCrystalClass()!= null) tableES.addCell(new
                // Paragraph(col.getCrystalClass().toString(),
                // new Font(Font.HELVETICA, 8)));
                // else tableES.addCell("");
                if (col.getCrystalClass() != null) {
                    int idCC = getCrystalClassIndex(listOfCrystalClass,
                            col.getCrystalClass().trim().toUpperCase());
                    if (idCC == -1) {
                        tableES.addCell(new Paragraph(col.getCrystalClass().toString(), FONT_DOC));
                    } else
                        tableES.addCell(
                                new Paragraph(listOfCrystalClass.get(idCC).getCrystalClassName(), FONT_DOC));
                } else
                    tableES.addCell("");
            }

            tableES.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
            if (col.getComments() != null)
                tableES.addCell(new Paragraph(col.getComments().toString(), FONT_DOC));
            else
                tableES.addCell("");
            tableES.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);

        }
        document.add(tableES);
    }
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set the XFR Spectra table//from  www . j  av a 2  s.com
 * 
 * @param document
 * @throws Exception
 */
private void setXfrSpectraTable(Document document) throws Exception {
    if (slv == null) {// if session is null, no sense to display XFRSpectra
        return;
    }
    document.add(new Paragraph("XRF Spectra:", FONT_TITLE));
    document.add(new Paragraph(" "));
    if (xfeList == null || xfeList.isEmpty()) {
        document.add(new Paragraph("There is no XRF spectra in this report", FONT_DOC));
    } else {
        int NumColumnsXRF = 6;
        Table tableXRF = new Table(NumColumnsXRF);
        int headerwidthsSessionXRF[] = { 15, 15, 15, 15, 15, 25 }; // percentage
        int headerwidthsMXPressXRF[] = { 16, 16, 15, 15, 15, 8, 17 }; // percentage
        tableXRF.setWidths(headerwidthsSessionXRF);
        // Column crystalClass added only for IFX proposal in case of
        // MXPress experiment
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) {
            tableXRF = new Table(NumColumnsXRF + 1);
            tableXRF.setWidths(headerwidthsMXPressXRF);
        }

        tableXRF.setWidth(100); // percentage
        tableXRF.setPadding(3);
        tableXRF.setCellsFitPage(true);
        tableXRF.getDefaultCell().setBorderWidth(1);
        tableXRF.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);

        // XRF Spectra Header

        tableXRF.getDefaultCell().setGrayFill(GREY_FILL_HEADER);
        tableXRF.addCell(new Paragraph("Energy\n(keV)", FONT_DOC_BOLD));
        tableXRF.addCell(new Paragraph("Exposure Time\n(s)", FONT_DOC_BOLD));
        tableXRF.addCell(new Paragraph("Beam size Hor.\n(" + Constants.MICRO + "m)", FONT_DOC_BOLD));
        tableXRF.addCell(new Paragraph("Beam size Ver.\n(" + Constants.MICRO + "m)", FONT_DOC_BOLD));
        tableXRF.addCell(new Paragraph("Transm. Factor\n(%)", FONT_DOC_BOLD));
        // Column crystalClass only for IFX proposal in case of MXPress
        // experiment
        if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX))
            tableXRF.addCell(new Paragraph("Crystal class", FONT_DOC_BOLD));
        tableXRF.addCell(new Paragraph("Comments", FONT_DOC_BOLD));
        tableXRF.getDefaultCell().setGrayFill(GREY_FILL_DATA);
        tableXRF.getDefaultCell().setBorderWidth(1);

        // XRF Spectra Rows
        Iterator<XFEFluorescenceSpectrum3VO> itES = xfeList.iterator();
        while (itES.hasNext()) {
            XFEFluorescenceSpectrum3VO col = itES.next();
            if (col.getEnergy() != null)
                tableXRF.addCell(new Paragraph(col.getEnergy().toString(), FONT_DOC));
            else
                tableXRF.addCell("");

            if (col.getExposureTime() != null)
                tableXRF.addCell(new Paragraph(col.getExposureTime().toString(), FONT_DOC));
            else
                tableXRF.addCell("");

            if (col.getBeamSizeHorizontal() != null)
                tableXRF.addCell(new Paragraph(col.getBeamSizeHorizontal().toString(), FONT_DOC));
            else
                tableXRF.addCell("");

            if (col.getBeamSizeVertical() != null)
                tableXRF.addCell(new Paragraph(col.getBeamSizeVertical().toString(), FONT_DOC));
            else
                tableXRF.addCell("");

            if (col.getBeamTransmission() != null)
                tableXRF.addCell(new Paragraph(col.getBeamTransmission().toString(), FONT_DOC));
            else
                tableXRF.addCell("");

            if (proposalCode.toLowerCase().equals(Constants.PROPOSAL_CODE_FX)) {
                // if (col.getCrystalClass()!= null) tableXRF.addCell(new
                // Paragraph(col.getCrystalClass().toString(), new
                // Font(Font.HELVETICA, 8)));
                // else tableXRF.addCell("");
                if (col.getCrystalClass() != null) {
                    int idCC = getCrystalClassIndex(listOfCrystalClass,
                            col.getCrystalClass().trim().toUpperCase());
                    if (idCC == -1) {
                        tableXRF.addCell(new Paragraph(col.getCrystalClass().toString(), FONT_DOC));
                    } else
                        tableXRF.addCell(
                                new Paragraph(listOfCrystalClass.get(idCC).getCrystalClassName(), FONT_DOC));
                } else
                    tableXRF.addCell("");
            }

            tableXRF.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
            if (col.getComments() != null)
                tableXRF.addCell(new Paragraph(col.getComments().toString(), FONT_DOC));
            else
                tableXRF.addCell("");
            tableXRF.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);

        }
        document.add(tableXRF);
    }
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set a table for a sessionDataObject/*w  w w .  jav  a  2  s  .  c om*/
 * 
 * @param document
 * @param sessionDataObject
 * @param mRequest
 */
private void setDetailSessionObjectTable(Document document, SessionDataObjectInformation sessionDataObject,
        HttpServletRequest mRequest) {
    try {
        int nbCol = 6;
        int nbRows = 5;
        List<Param> listParam = sessionDataObject.getListParameters();
        int idParam = 0;
        int nbParam = listParam.size();
        nbRows = Math.max(nbRows, nbParam);
        boolean secondGraph = sessionDataObject.getGraph2Path() != null
                && !sessionDataObject.getGraph2Path().isEmpty();
        if (secondGraph)
            nbCol += 1;

        Table table = new Table(nbCol);

        int l = 0;

        int[] headersWidth = new int[nbCol];

        headersWidth[l++] = 10; // def
        headersWidth[l++] = 6; // parameters title
        headersWidth[l++] = 6; // parameters value
        headersWidth[l++] = 12; // Thumbnail
        headersWidth[l++] = 12; // Snapshot
        headersWidth[l++] = 22; // Graph
        if (secondGraph)
            headersWidth[l++] = 22; // Graph2
        table.setWidths(headersWidth);

        table.setWidth(100); // percentage
        table.setPadding(1);
        table.setCellsFitPage(true);
        table.setTableFitsPage(true);
        table.setBorderWidth(1);
        table.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
        // no header
        // first Row
        // firstCell: def : date
        SimpleDateFormat formatter = new SimpleDateFormat("dd/MM/yyyy HH:mm:ss");
        String collectTime = formatter.format(sessionDataObject.getDataTime());
        Cell c = getCellValue(collectTime);
        c.setBorderWidthBottom(0);
        table.addCell(c);
        // second Cell param
        setCellParam(table, listParam, idParam++, 1);
        // third Cell : thumbnail
        Cell cellThumbnail = getCellImage(sessionDataObject.getImageThumbnailPath());
        cellThumbnail.setRowspan(nbRows);
        cellThumbnail.setBorderWidth(0);
        table.addCell(cellThumbnail);
        // 4 Cell : snapshot
        Cell cellSnapshot = getCellImage(sessionDataObject.getCrystalSnapshotPath());
        cellSnapshot.setRowspan(nbRows);
        cellSnapshot.setBorderWidth(0);
        table.addCell(cellSnapshot);
        // 5 Cell : graph
        Cell cellGraph = getCellGraph(sessionDataObject);
        cellGraph.setRowspan(nbRows);
        cellGraph.setBorderWidth(0);
        table.addCell(cellGraph);
        // 6 Cell : graph2
        if (secondGraph) {
            Cell cellGraph2 = getCellImage(sessionDataObject.getGraph2Path());
            cellGraph2.setRowspan(nbRows);
            cellGraph2.setBorderWidth(0);
            table.addCell(cellGraph2);
        }

        // second row
        Cell c2 = getCellValue(sessionDataObject.getImagePrefix() + " " + sessionDataObject.getRunNumber());
        c2.setBorderWidth(0);
        table.addCell(c2);
        // param2
        setCellParam(table, listParam, idParam++, 1);

        // third row
        Cell c3 = getCellValue(sessionDataObject.getExperimentType());
        c3.setBorderWidth(0);
        table.addCell(c3);
        // param3
        setCellParam(table, listParam, idParam++, 1);

        // 4 row
        Cell c4 = getCellValue(sessionDataObject.getSampleNameProtein());
        c4.setBorderWidth(0);
        table.addCell(c4);
        // param4
        setCellParam(table, listParam, idParam++, 1);

        // 5 row
        Cell c5 = new Cell();
        c5.setHorizontalAlignment(Element.ALIGN_LEFT);
        c5.add(new Paragraph(sessionDataObject.getComments(), FONT_DOC_ITALIC));
        c5.setBorderWidth(0);
        c5.setRowspan(nbRows - 4);
        table.addCell(c5);
        // param4
        setCellParam(table, listParam, idParam++, 1);

        for (int i = 5; i < nbRows; i++) {
            setCellParam(table, listParam, idParam++, 1);
        }

        // results
        // workflow result status
        if (sessionDataObject.isWorkflow()) {
            Cell resultCell = getWorkflowResult(sessionDataObject.getWorkflow(), mRequest);
            resultCell.setHorizontalAlignment(Element.ALIGN_LEFT);
            resultCell.setColspan(nbCol);
            table.addCell(resultCell);
        }
        // collect OSC
        if ((sessionDataObject.isDataCollection()
                && !sessionDataObject.getDataCollection().getDataCollectionGroupVO().getExperimentType()
                        .equals(Constants.EXPERIMENT_TYPE_CHARACTERIZATION))) {
            DataCollectionExporter dcExporter = new DataCollectionExporter(df2, df3, proposalCode,
                    proposalNumber, mRequest);
            DataCollection3VO dataCollection = sessionDataObject.getDataCollection();
            DataCollectionInformation dcInfo = dcExporter.getDataCollectionInformation(dataCollection,
                    getSampleRankingVO(dataCollection.getDataCollectionId()),
                    getAutoProcRankingVO(dataCollection.getDataCollectionId()));
            Cell resultCell = getAutoProcResultStatus(dcInfo);
            resultCell.setColspan(nbCol);
            resultCell.setHorizontalAlignment(Element.ALIGN_LEFT);
            table.addCell(resultCell);
            document.add(table);
            document.add(new Paragraph(" ", VERY_SMALL_FONT));

            setAutoProcResultsTable(document, dcInfo);
        } else if (sessionDataObject.isWorkflow() && sessionDataObject.getWorkflow().isMXPressEOIA()) { // MXPRESS
            // wf
            DataCollectionExporter dcExporter = new DataCollectionExporter(df2, df3, proposalCode,
                    proposalNumber, mRequest);
            DataCollection3VO dataCollection = sessionDataObject.getListDataCollection().get(0);
            DataCollectionInformation dcInfo = dcExporter.getDataCollectionInformation(dataCollection,
                    getSampleRankingVO(dataCollection.getDataCollectionId()),
                    getAutoProcRankingVO(dataCollection.getDataCollectionId()));
            Cell resultCell = getAutoProcResultStatus(dcInfo);
            resultCell.setHorizontalAlignment(Element.ALIGN_LEFT);
            resultCell.setColspan(nbCol);
            table.addCell(resultCell);

            document.add(table);
            document.add(new Paragraph(" ", VERY_SMALL_FONT));

            setAutoProcResultsTable(document, dcInfo);
        } else if ((sessionDataObject.isDataCollection()
                && sessionDataObject.getDataCollection().getDataCollectionGroupVO().getExperimentType()
                        .equals(Constants.EXPERIMENT_TYPE_CHARACTERIZATION))) { // Characterization
            DataCollectionExporter dcExporter = new DataCollectionExporter(df2, df3, proposalCode,
                    proposalNumber, mRequest);
            DataCollection3VO dataCollection = sessionDataObject.getDataCollection();
            DataCollectionInformation dcInfo = dcExporter.getDataCollectionInformation(dataCollection,
                    getSampleRankingVO(dataCollection.getDataCollectionId()),
                    getAutoProcRankingVO(dataCollection.getDataCollectionId()));
            Cell resultCell = getCharacterizationResultStatus(dcInfo, mRequest);
            resultCell.setColspan(nbCol);
            resultCell.setHorizontalAlignment(Element.ALIGN_LEFT);
            table.addCell(resultCell);
            document.add(table);
            document.add(new Paragraph(" ", VERY_SMALL_FONT));

            setStrategyTable2(document, dcInfo);
        } else {
            List<Param> listResults = sessionDataObject.getListResults();
            if (listResults != null) {
                int nbResults = listResults.size();
                for (int j = 0; j < nbResults; j++) {
                    setCellParam(table, listResults, j, 2);
                    Cell eCell = getEmptyCell(nbCol - 3);
                    eCell.setBorderWidth(0);
                    table.addCell(eCell);
                }
            }
            document.add(table);
            document.add(new Paragraph(" ", FONT_SPACE));
        }

    } catch (Exception e) {
        e.printStackTrace();
    }
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set a cell for a param or empty cell if no more param in the list
 * /*from ww w . j  a v a2  s  .  c  o  m*/
 * @param table
 * @param listParam
 * @param id
 * @param colSpanTitle
 * @throws Exception
 */
private void setCellParam(Table table, List<Param> listParam, int id, int colSpanTitle) throws Exception {
    if (id < listParam.size()) {
        Param param = listParam.get(id);
        Cell cellTitle = new Cell();
        cellTitle.setBorderWidth(0);
        cellTitle.setColspan(colSpanTitle);
        cellTitle.setHorizontalAlignment(Element.ALIGN_RIGHT);
        cellTitle.add(new Paragraph(param.getText(), FONT_DOC_PARAM_TITLE));
        table.addCell(cellTitle);

        Cell cellValue = new Cell();
        cellValue.setBorderWidth(0);
        cellValue.setHorizontalAlignment(Element.ALIGN_LEFT);
        cellValue.add(new Paragraph(param.getValue(), FONT_DOC));
        table.addCell(cellValue);
    } else {
        Cell cellTitle = getEmptyCell(1);
        cellTitle.setBorderWidth(0);
        cellTitle.setColspan(colSpanTitle);
        table.addCell(cellTitle);

        Cell cellValue = getEmptyCell(1);
        cellValue.setBorderWidth(0);
        table.addCell(cellValue);
    }
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * sets the date and if it is a SCREEN or a COLLECT and indexing status
 * //from   www.  j av  a2s  .  c  o  m
 * @param document
 * @param dcValue
 * @param date
 * @throws Exception
 */
private void setDataCollectionGeneralInfo(Document document, DataCollection3VO dcValue,
        DataCollectionInformation dcInfo) throws Exception {
    String collect = "Collect";
    if (DataCollectionExporter.isDataCollectionScreening(dcValue)) {
        collect = "Screen";
    }
    String date = dcInfo.getDataCollectionDate();
    String screeningSuccess = dcInfo.getScreeningSuccess();
    String screeningFailure = dcInfo.getScreeningFailure();
    String screeningNotDone = dcInfo.getScreeningNotDone();
    Table aTable = new Table(3);
    aTable.setWidth(100); // percentage
    aTable.setPadding(3);
    aTable.setCellsFitPage(true);
    aTable.getDefaultCell().setBorderWidth(0);
    aTable.setBorderWidth(0);
    aTable.getDefaultCell().setHorizontalAlignment(Element.ALIGN_LEFT);
    aTable.addCell(new Paragraph(date, FONT_DOC));
    aTable.addCell(new Paragraph(collect, FONT_DOC));
    // no indexing availabe
    if (screeningNotDone != null && !screeningNotDone.equals("")) {
        aTable.addCell(new Paragraph(screeningNotDone, FONT_INDEXING_NOTDONE));
    } else if (screeningFailure != null && !screeningFailure.equals("")) { // indexing
        // failed
        aTable.addCell(new Paragraph(screeningFailure, FONT_INDEXING_FAILED));
    } else if (screeningSuccess != null && !screeningSuccess.equals("")) { // indexing
        // successful
        aTable.addCell(new Paragraph(screeningSuccess, FONT_INDEXING_SUCCESS));
    } else {
        aTable.addCell(new Paragraph(" "));
    }
    document.add(aTable);
    document.add(new Paragraph(" ", VERY_SMALL_FONT));
}

From source file:ispyb.client.mx.collection.PdfRtfExporter.java

License:Open Source License

/**
 * set the table for a given MXPressO//  w  w  w .  j  av a  2s .c  om
 * 
 * @param document
 * @param dataCollectionGroupVO
 * @param mRequest
 * @param lastCollectOSC
 * @param nextToLastCollectChar
 * @throws Exception
 */
private void setMXPressOTable(Document document, DataCollectionGroup3VO dataCollectionGroupVO,
        HttpServletRequest mRequest, DataCollection3VO lastCollectOSC, DataCollection3VO nextToLastCollectChar)
        throws Exception {
    if (dataCollectionGroupVO != null) {

        DataCollectionExporter dcExporter = new DataCollectionExporter(df2, df3, proposalCode, proposalNumber,
                mRequest);
        if (lastCollectOSC != null) {

            DataCollectionInformation dcInfo = dcExporter.getDataCollectionInformation(lastCollectOSC,
                    getSampleRankingVO(lastCollectOSC.getDataCollectionId()),
                    getAutoProcRankingVO(lastCollectOSC.getDataCollectionId()));

            int noCol = 3;
            Table tableWF = new Table(noCol);
            int[] headersWidthWF = new int[noCol];
            int l = 0;

            headersWidthWF[l++] = 27; // snapshot
            headersWidthWF[l++] = 24; // map 1
            headersWidthWF[l++] = 51; // map2
            // tableWF.setWidths(headersWidthWF);

            tableWF.setWidth(100); // percentage
            tableWF.setPadding(1);
            tableWF.setCellsFitPage(true);
            tableWF.setTableFitsPage(true);
            tableWF.getDefaultCell().setBorderWidth(1);
            tableWF.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);
            // first row: protein acronym and sample name (or image prefix)
            // and startTime
            String collectName = lastCollectOSC.getImagePrefix();
            if (dataCollectionGroupVO.getBlSampleVO() != null
                    && dataCollectionGroupVO.getBlSampleVO().getCrystalVO() != null) {
                collectName = dataCollectionGroupVO.getBlSampleVO().getCrystalVO().getProteinVO().getAcronym()
                        + "-" + dataCollectionGroupVO.getBlSampleVO().getName();
            }
            tableWF.addCell(new Paragraph(collectName, FONT_DOC));

            String collectTime = lastCollectOSC.getStartTime().toString();
            Cell c = new Cell(new Paragraph(collectTime, FONT_DOC));
            c.setColspan(2);
            tableWF.addCell(c);

            // second row: first snapshot + cartography graphes (2 mesh)
            // first snapshot
            String imgCrystal = dcInfo.getPathJpgCrystal3();
            Cell cellCrystalImage = getCellImage(imgCrystal);
            tableWF.addCell(cellCrystalImage);
            // workflowMesh cartography
            Workflow3VO mxExpressOWF = dataCollectionGroupVO.getWorkflowVO();
            List<WorkflowMesh3VO> listWFMesh = new ArrayList<WorkflowMesh3VO>();
            Ejb3ServiceLocator ejb3ServiceLocator = Ejb3ServiceLocator.getInstance();
            WorkflowMesh3Service workflowMeshService = (WorkflowMesh3Service) ejb3ServiceLocator
                    .getLocalService(WorkflowMesh3Service.class);
            listWFMesh = workflowMeshService.findByWorkflowId(mxExpressOWF.getWorkflowId());

            if (listWFMesh != null && listWFMesh.size() > 0) {
                Cell cellImg1 = getMeshMapCell(listWFMesh.get(0));
                if (cellImg1 == null) {
                    tableWF.addCell(new Paragraph("Image not found", FONT_DOC));
                } else {
                    tableWF.addCell(cellImg1);
                }
                if (listWFMesh.size() > 1) {
                    Cell cellImg2 = getMeshMapCell(listWFMesh.get(1));
                    if (cellImg2 == null) {
                        tableWF.addCell(new Paragraph("Image not found", FONT_DOC));
                    } else {
                        tableWF.addCell(cellImg2);
                    }
                } else
                    tableWF.addCell(new Paragraph("No Workflow found", FONT_DOC));
            } else {
                tableWF.addCell(new Paragraph("No Workflow found", FONT_DOC));
                tableWF.addCell(new Paragraph("No Workflow found", FONT_DOC));
            }

            //
            // third row:
            // autoprocessing results
            Cell resultCell = getAutoProcResultStatus(dcInfo);
            resultCell.setColspan(3);
            resultCell.setHorizontalAlignment(Element.ALIGN_LEFT);
            tableWF.addCell(resultCell);

            Integer idDc = -1;
            for (int k = 0; k < dataCollectionList.size(); k++) {
                DataCollection3VO dcVo = dataCollectionList.get(k);
                if (dcVo.getDataCollectionId().equals(lastCollectOSC.getDataCollectionId())) {
                    idDc = k;
                    break;
                }
            }

            if (idDc != -1) {
                AutoProc3VO[] autoProcs = wrapper.getAutoProcs();
                AutoProcScalingStatistics3VO[] autoProcsOverall = wrapper.getScalingStatsOverall();
                AutoProcScalingStatistics3VO[] autoProcsInner = wrapper.getScalingStatsInner();
                AutoProcScalingStatistics3VO[] autoProcsOuter = wrapper.getScalingStatsOuter();

                AutoProc3VO autoProcValue = autoProcs[idDc];
                AutoProcScalingStatistics3VO autoProcOverall = autoProcsOverall[idDc];
                AutoProcScalingStatistics3VO autoProcInner = autoProcsInner[idDc];
                AutoProcScalingStatistics3VO autoProcOuter = autoProcsOuter[idDc];
                if (autoProcValue == null) {
                    Cell cNo = new Cell(new Paragraph("No autoprocessing results found", FONT_DOC));
                    cNo.setColspan(3);
                    cNo.setHorizontalAlignment(Element.ALIGN_LEFT);
                    tableWF.addCell(cNo);
                    document.add(tableWF);
                } else {
                    int noColSPG = 5;
                    Table tableSPG = new Table(noColSPG);
                    int[] headersWidth = new int[noColSPG];
                    int i = 0;

                    headersWidth[i++] = 7; // space group
                    headersWidth[i++] = 10; // completeness
                    headersWidth[i++] = 9; // resolution
                    headersWidth[i++] = 9; // rsymm
                    headersWidth[i++] = 12; // unit cell
                    tableSPG.setWidths(headersWidth);

                    tableSPG.setWidth(100); // percentage
                    tableSPG.setPadding(3);
                    tableSPG.setCellsFitPage(true);
                    tableSPG.setTableFitsPage(true);
                    tableSPG.getDefaultCell().setBorderWidth(1);
                    tableSPG.getDefaultCell().setHorizontalAlignment(Element.ALIGN_CENTER);

                    tableSPG.getDefaultCell().setGrayFill(GREY_FILL_HEADER);
                    tableSPG.addCell(new Paragraph("Space Group", FONT_DOC_BOLD));
                    tableSPG.addCell(new Paragraph("Completeness (Inner, Outer, Overall)", FONT_DOC_BOLD));
                    tableSPG.addCell(new Paragraph("Resolution", FONT_DOC_BOLD));
                    tableSPG.addCell(new Paragraph("Rsymm (Inner, Outer, Overall)", FONT_DOC_BOLD));
                    tableSPG.addCell(new Paragraph("Unit Cell (a, b, c, alpha, beta, gamma)", FONT_DOC_BOLD));

                    tableSPG.getDefaultCell().setGrayFill(GREY_FILL_DATA);

                    // space group
                    if (autoProcValue != null && autoProcValue.getSpaceGroup() != null) {
                        Paragraph p = new Paragraph(autoProcValue.getSpaceGroup(), FONT_DOC);
                        tableSPG.addCell(p);
                    } else
                        tableSPG.addCell("");

                    // completeness, rsymm, processed resolution
                    String completenessString = new String();
                    String rSymmString = new String();
                    String resolutionString = new String();

                    if (autoProcOverall != null && autoProcInner != null && autoProcOuter != null) {
                        completenessString += df2.format(autoProcInner.getCompleteness()) + "\n"
                                + df2.format(autoProcOuter.getCompleteness()) + "\n"
                                + df2.format(autoProcOverall.getCompleteness());
                        rSymmString += (autoProcInner.getRmerge() == null ? ""
                                : df2.format(autoProcInner.getRmerge()))
                                + "\n"
                                + (autoProcOuter.getRmerge() == null ? ""
                                        : df2.format(autoProcOuter.getRmerge()))
                                + "\n" + (autoProcOverall.getRmerge() == null ? ""
                                        : df2.format(autoProcOverall.getRmerge()));
                        resolutionString += autoProcInner.getResolutionLimitLow() + " - "
                                + autoProcInner.getResolutionLimitHigh() + "\n"
                                + autoProcOuter.getResolutionLimitLow() + " - "
                                + autoProcOuter.getResolutionLimitHigh() + "\n"
                                + autoProcOverall.getResolutionLimitLow() + " - "
                                + autoProcOverall.getResolutionLimitHigh();
                    }
                    tableSPG.addCell(new Paragraph(completenessString, FONT_DOC));
                    tableSPG.addCell(new Paragraph(resolutionString, FONT_DOC));
                    tableSPG.addCell(new Paragraph(rSymmString, FONT_DOC));

                    // unit cell
                    if (autoProcValue != null && autoProcValue.getSpaceGroup() != null) {
                        tableSPG.addCell(new Paragraph("" + autoProcValue.getRefinedCellA() + ", "
                                + autoProcValue.getRefinedCellB() + ", " + autoProcValue.getRefinedCellC()
                                + "\n" + autoProcValue.getRefinedCellAlpha() + ", "
                                + autoProcValue.getRefinedCellBeta() + ", "
                                + autoProcValue.getRefinedCellGamma(), FONT_DOC));
                    } else {
                        tableSPG.addCell("");
                    }

                    document.add(tableWF);
                    document.add(new Paragraph("Best autoprocessing result", FONT_DOC));
                    document.add(tableSPG);
                } // end autoProc null
            } // end idDc -1

            //
            document.add(new Paragraph(" ", FONT_SPACE));

        } // end lastCollect null
        if (nextToLastCollectChar != null) {
            DataCollectionInformation dcInfo = dcExporter.getDataCollectionInformation(nextToLastCollectChar,
                    getSampleRankingVO(nextToLastCollectChar.getDataCollectionId()),
                    getAutoProcRankingVO(nextToLastCollectChar.getDataCollectionId()));

            if (dcInfo.getSpacegroup() != "") {
                document.add(new Paragraph("EDNA characterisation output and collect strategy", FONT_DOC));
            }
            setEDNATable2(document, dcInfo);
            setStrategyTable2(document, dcInfo);
        }
    } // end dataCollectionGroup null
}