Example usage for com.google.gson JsonObject has

Introduction

In this page you can find the example usage for com.google.gson JsonObject has.

Prototype

public boolean has(String memberName) 

Source Link

Document

Convenience method to check if a member with the specified name is present in this object.

Usage

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private void getLocation(POI poi, JsonObject jObject) {
    JsonObject json = jObject.getAsJsonObject(LOCATION);
    JsonArray array;/*from  ww  w .ja v a  2s.c  o  m*/

    Location location = new Location();
    if (json.has(POINT)) {
        array = json.getAsJsonArray(POINT);
        getPoints(location, array);
    }

    if (json.has(LINE)) {
        array = json.getAsJsonArray(LINE);
        getLine(location, array);
    }

    if (json.has(POLYGON)) {
        array = json.getAsJsonArray(POLYGON);
        getSimplePolygon(location, array);
    }

    if (json.has(ADDRESS))
        location.setAddress(getPOIBaseType(json.getAsJsonObject(ADDRESS)));

    if (json.has(RELATIONSHIP)) {
        array = json.getAsJsonArray(RELATIONSHIP);
        getRelationships(location, array);
    }

    poi.setLocation(location);
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private void getTime(POI poi, JsonObject jObject) {
    JsonArray jArray = jObject.getAsJsonArray(TIME);
    for (int i = 0; i < jArray.size(); i++) {
        JsonObject ob = jArray.get(i).getAsJsonObject();
        POITermType term = getPOITermType(ob);

        if (ob.has(SCHEME))
            term.setScheme(ob.get(SCHEME).getAsString());

        poi.addTime(term);/*w w  w  .ja  v  a 2  s .  co m*/
    }
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private void getSinglePOI(POI poi, JsonObject jObject) {
    copyTo(poi, getPOIBaseType(jObject));
    if (jObject.has(LABEL))
        getLabels(poi, jObject);//from w ww.j a v  a2  s . c o m

    if (jObject.has(DESCRIPTION))
        getDescription(poi, jObject);

    if (jObject.has(CATEGORY))
        getCategories(poi, jObject);

    if (jObject.has(LOCATION))
        getLocation(poi, jObject);

    if (jObject.has(TIME))
        getTime(poi, jObject);

    if (jObject.has(LINK))
        getLinks(poi, jObject);
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private void deserializePoiBased(Deserializable poi, JsonObject json) {
    getSinglePOI((POI) poi, json);//from w w w  . ja v a 2 s.c  om

    // for routes
    if (json.has(POIS)) {
        JsonArray jArray = json.get(POIS).getAsJsonArray();
        ListPointOfInterest list = ((Route) poi).getListPoi();
        for (int i = 0; i < jArray.size(); i++) {
            PointOfInterest rPoi = new PointOfInterest();
            getSinglePOI(rPoi, jArray.get(i).getAsJsonObject());
            list.addPoi(rPoi);
        }
    }
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private POI deserializeCategories(Category list, JsonElement elem) {
    JsonObject json = null;
    JsonArray array;// www .java  2  s. c o  m

    if (elem.isJsonObject() && elem.getAsJsonObject().has(CATEGORIES)) {
        array = elem.getAsJsonObject().get(CATEGORIES).getAsJsonArray();
        for (int i = 0; i < array.size(); i++) {
            Category cat = new Category();
            json = array.get(i).getAsJsonObject();
            getSinglePOI(cat, json);
            if (json.has(CATEGORIES)) {
                Category subs = (Category) deserializeCategories(new Category(), json);
                for (int j = 0; j < subs.getNumCategories(); j++)
                    cat.addCategory(subs.getCategory(j));
            }

            list.addCategory(cat);
        }
    }

    return list;
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

private void deserializeListOfList(ListPOIS list, JsonObject jObject) {
    if (jObject.has(POI)) {
        ListPointOfInterest pois = new ListPointOfInterest();
        deserializeListPois(pois, jObject);
        list.setListPoi(pois);//from  w w  w  .j  a  va  2 s .  co m
    }

    if (jObject.has(EVENT)) {
        ListEvent events = new ListEvent();
        deserializeListEvents(events, jObject);
        list.setListEvent(events);
    }

    if (jObject.has(ROUTES)) {
        ListRoute routes = new ListRoute();
        deserializeListRoutes(routes, jObject);
        list.setListRoute(routes);
    }
}

---

From source file:citysdk.tourism.client.parser.POIDeserializer.java

License:Open Source License

/**
 * Gson deserializer for the CitySDK Tourism POI Classes
 */// www  . ja  va2s.  c  om
@Override
public Deserializable deserialize(JsonElement json, Type typeOfT, JsonDeserializationContext context)
        throws JsonParseException {
    JsonObject jObject = json.getAsJsonObject();
    Deserializable deserializable = (Deserializable) inferType(typeOfT);

    if (deserializable.getClass().equals(ListPOIS.class)) {
        deserializeListOfList((ListPOIS) deserializable, jObject);
    } else if (jObject.has(POI)) {
        deserializeListPois((ListPointOfInterest) deserializable, jObject);
    } else if (jObject.has(EVENT)) {
        deserializeListEvents((ListEvent) deserializable, jObject);
    } else if (jObject.has(ROUTES)) {
        deserializeListRoutes((ListRoute) deserializable, jObject);
    } else if (jObject.has(TOURISM)) {
        deserializeResources((Resources) deserializable, jObject);
    } else if (jObject.has(CATEGORIES)) {
        deserializeCategories((Category) deserializable, jObject);
    } else if (jObject.has(TAGS)) {
        deserializeTags((ListTag) deserializable, jObject);
    } else if (deserializable != null) {
        deserializePoiBased(deserializable, jObject);
    }

    return deserializable;
}

---

From source file:classes.analysis.Analysis.java

License:Open Source License

private static Analysis parseAnalysisGalaxyData(String origin, String emsuser, JsonObject analysisData) {
    JsonParser parser = new JsonParser();
    JsonArray provenance = (JsonArray) parser.parse(analysisData.get("provenance").getAsString());

    //STEP 1. Find the associations between the steps (inputs and outputs)
    HashMap<String, JsonElement> outputs = new HashMap<String, JsonElement>();
    JsonObject stepJSONobject;
    for (JsonElement step_json : provenance) {
        stepJSONobject = step_json.getAsJsonObject();
        for (JsonElement output : stepJSONobject.getAsJsonArray("outputs")) {
            outputs.put(output.getAsJsonObject().get("id").getAsString(), step_json);
        }/* w  ww  . j a v a2s.  co  m*/

        if ("upload1".equalsIgnoreCase(stepJSONobject.get("tool_id").getAsString())) {
            stepJSONobject.remove("step_type");
            stepJSONobject.add("step_type", new JsonPrimitive("external_source"));
        } else {
            stepJSONobject.add("step_type", new JsonPrimitive("processed_data"));
        }
    }
    for (JsonElement step_json : provenance) {
        stepJSONobject = step_json.getAsJsonObject();
        for (JsonElement input : stepJSONobject.getAsJsonArray("inputs")) {
            String id = input.getAsJsonObject().get("id").getAsString();
            if (outputs.containsKey(id)) {
                if (!"external_source"
                        .equalsIgnoreCase(outputs.get(id).getAsJsonObject().get("step_type").getAsString())) {
                    outputs.get(id).getAsJsonObject().remove("step_type");
                    outputs.get(id).getAsJsonObject().add("step_type", new JsonPrimitive("intermediate_data"));
                }

                if (!stepJSONobject.has("used_data")) {
                    stepJSONobject.add("used_data", new JsonArray());
                }
                ((JsonArray) stepJSONobject.get("used_data")).add(new JsonPrimitive(
                        "STxxxx." + outputs.get(id).getAsJsonObject().get("id").getAsString()));
            }
        }
    }

    //STEP 2. Create the instances for the steps
    ArrayList<NonProcessedData> nonProcessedDataList = new ArrayList<NonProcessedData>();
    ArrayList<ProcessedData> processedDataList = new ArrayList<ProcessedData>();
    for (JsonElement step_json : provenance) {
        stepJSONobject = step_json.getAsJsonObject();
        if ("external_source".equalsIgnoreCase(stepJSONobject.get("step_type").getAsString())) {
            nonProcessedDataList.add(ExternalData.parseStepGalaxyData(stepJSONobject, analysisData, emsuser));
        } else if ("intermediate_data".equalsIgnoreCase(stepJSONobject.get("step_type").getAsString())) {
            nonProcessedDataList
                    .add(IntermediateData.parseStepGalaxyData(stepJSONobject, analysisData, emsuser));
        } else if ("processed_data".equalsIgnoreCase(stepJSONobject.get("step_type").getAsString())) {
            processedDataList.add(ProcessedData.parseStepGalaxyData(stepJSONobject, analysisData, emsuser));
        } else {
            throw new InstantiationError("Unknown step type");
        }
    }

    Collections.sort(nonProcessedDataList);
    Collections.sort(processedDataList);

    //STEP 3. Create the instance of analysis
    Analysis analysis = new Analysis();
    analysis.setAnalysisName(analysisData.get("ems_analysis_name").getAsString());
    analysis.setAnalysisType("Galaxy workflow");
    analysis.setNonProcessedData(nonProcessedDataList.toArray(new NonProcessedData[] {}));
    analysis.setProcessedData(processedDataList.toArray(new ProcessedData[] {}));
    analysis.setTags(new String[] { "imported" });
    analysis.setStatus("pending");

    return analysis;
}

---

From source file:classes.analysis.non_processed_data.IntermediateData.java

License:Open Source License

public static IntermediateData parseStepGalaxyData(JsonObject step_json_object, JsonObject analysisData,
        String emsuser) {/*from  ww w  . j  a v a  2s . c om*/
    IntermediateData step = new IntermediateData("STxxxx." + step_json_object.get("id").getAsString());
    step.setIntermediateDataType("preprocessing_step");
    step.setSoftware(step_json_object.get("tool_id").getAsString());
    step.setSoftwareVersion(step_json_object.get("tool_version").getAsString());
    HashSet<String> used_data = new HashSet<String>();
    if (step_json_object.has("used_data")) {
        for (JsonElement data : step_json_object.get("used_data").getAsJsonArray()) {
            used_data.add(data.getAsString());
        }
    }
    step.setUsedData(used_data.toArray(new String[] {}));

    String prefix = analysisData.get("experiment_id").getAsString() + "/"
            + analysisData.get("analysis_id").getAsString() + "/";
    ArrayList<String> outputs = new ArrayList<String>();
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        outputs.add(prefix + output.getAsJsonObject().get("file").getAsString().replaceAll(" ", "_") + "."
                + output.getAsJsonObject().get("extension").getAsString());
    }
    step.setFilesLocation(outputs.toArray(new String[] {}));

    String description = "Step " + step_json_object.get("id").getAsString() + " in Galaxy history "
            + analysisData.get("history_id").getAsString() + ".\n";
    description += "The tool exited with code " + step_json_object.get("exit_code").getAsString() + "\n";
    description += "Outputs:\n";
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        description += "  - " + output.getAsJsonObject().get("file").getAsString() + " (id:"
                + output.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    step.setResults(description);

    description = "Step inputs:\n";
    for (JsonElement input : step_json_object.get("inputs").getAsJsonArray()) {
        description += "  - " + input.getAsJsonObject().get("file").getAsString() + " (id:"
                + input.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    description += "\n";
    description += "Parameters:\n";
    for (JsonElement input : step_json_object.get("parameters").getAsJsonArray()) {
        description += Step.getParameterDescription(input.getAsJsonObject(), 1);
    }

    step.setSoftwareConfiguration(description);

    Date dateNow = new Date();
    SimpleDateFormat dateFormat = new SimpleDateFormat("yyyyMMdd");
    step.setSubmissionDate(dateFormat.format(dateNow));
    step.setLastEditionDate(dateFormat.format(dateNow));
    step.addOwner(new User(emsuser, ""));
    if (step_json_object.has("step_name")) {
        step.setStepName(step_json_object.get("step_name").getAsString());
    } else {
        step.setStepName(step_json_object.get("tool_id").getAsString());
    }
    step.setStepNumber(step_json_object.get("id").getAsInt());

    return step;
}

---

From source file:classes.analysis.ProcessedData.java

License:Open Source License

public static ProcessedData parseStepGalaxyData(JsonObject step_json_object, JsonObject analysisData,
        String emsuser) {//from  w w  w .ja  v a  2s  .  c om
    ProcessedData step = new ProcessedData("STxxxx." + step_json_object.get("id").getAsString());
    step.setProcessedDataType("quantification_step");
    step.setSoftware(step_json_object.get("tool_id").getAsString());
    step.setSoftwareVersion(step_json_object.get("tool_version").getAsString());
    HashSet<String> used_data = new HashSet<String>();
    if (step_json_object.has("used_data")) {
        for (JsonElement data : step_json_object.get("used_data").getAsJsonArray()) {
            used_data.add(data.getAsString());
        }
    }
    step.setUsedData(used_data.toArray(new String[] {}));

    String prefix = analysisData.get("experiment_id").getAsString() + "/"
            + analysisData.get("analysis_id").getAsString() + "/";
    ArrayList<String> outputs = new ArrayList<String>();
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        outputs.add(prefix + output.getAsJsonObject().get("file").getAsString().replaceAll(" ", "_") + "."
                + output.getAsJsonObject().get("extension").getAsString());
    }
    step.setFilesLocation(outputs.toArray(new String[] {}));

    String description = "Step " + step_json_object.get("id").getAsString() + " in Galaxy history "
            + analysisData.get("history_id").getAsString() + ".\n";
    description += "The tool exited with code " + step_json_object.get("exit_code").getAsString() + "\n";
    description += "Outputs:\n";
    for (JsonElement output : step_json_object.get("outputs").getAsJsonArray()) {
        description += "  - " + output.getAsJsonObject().get("file").getAsString() + " (id:"
                + output.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    step.setResults(description);

    description = "Step inputs:\n";
    for (JsonElement input : step_json_object.get("inputs").getAsJsonArray()) {
        description += "  - " + input.getAsJsonObject().get("file").getAsString() + " (id:"
                + input.getAsJsonObject().get("id").getAsString() + ")\n";
    }
    description += "\n";
    description += "Parameters:\n";
    for (JsonElement input : step_json_object.get("parameters").getAsJsonArray()) {
        description += Step.getParameterDescription(input.getAsJsonObject(), 1);
    }

    step.setSoftwareConfiguration(description);

    Date dateNow = new Date();
    SimpleDateFormat dateFormat = new SimpleDateFormat("yyyyMMdd");
    step.setSubmissionDate(dateFormat.format(dateNow));
    step.setLastEditionDate(dateFormat.format(dateNow));
    step.addOwner(new User(emsuser, ""));
    step.setStepName(step_json_object.get("tool_id").getAsString());
    step.setStepNumber(step_json_object.get("id").getAsInt());

    return step;
}

---

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